CN116218918A - Jurkat effector cell, construction method and application thereof - Google Patents
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Abstract
Description
技术领域technical field
本发明涉及一种效应细胞及其构建方法和用途,具体涉及一种Jurkat效应细胞及其构建方法和用途。The present invention relates to an effector cell and its construction method and application, in particular to a Jurkat effector cell and its construction method and application.
背景技术Background technique
肿瘤免疫治疗是通过调动机体的免疫系统,增强肿瘤微环境抗肿瘤免疫力,从而控制和杀伤肿瘤细胞。近几年,随着CAR-T和TCR-T技术的发展,使得肿瘤免疫治疗焕发新春,并进入大爆发阶段。其中,CAR-T已经在血液肿瘤上显示出治愈肿瘤的潜力。嵌合抗原受体(CAR)和T细胞受体(TCR)修饰的T细胞是当前过继性细胞治疗技术中最新和最富有成效的技术,实现了从基础免疫学机制研究到临床肿瘤免疫治疗应用的转变。因其能够表达人工合成受体并能特异性识别靶细胞,CAR-T和TCR-T正成为振奋人心的肿瘤治疗方法。Tumor immunotherapy is to control and kill tumor cells by mobilizing the body's immune system and enhancing the anti-tumor immunity of the tumor microenvironment. In recent years, with the development of CAR-T and TCR-T technologies, tumor immunotherapy has been rejuvenated and has entered a stage of major outbreak. Among them, CAR-T has shown the potential to cure tumors in blood tumors. Chimeric antigen receptor (CAR) and T cell receptor (TCR) modified T cells are the latest and most fruitful technologies in the current adoptive cell therapy technology, realizing the research from basic immunological mechanism to clinical application of tumor immunotherapy change. Because of their ability to express artificially synthesized receptors and specifically recognize target cells, CAR-T and TCR-T are becoming exciting tumor treatments.
CAR和TCR特异性分子序列设计和筛选,以及结构优化和评价是目前各大公司和学术结构在开发CAR-T和TCR-T产品中所面临的最关键问题。比如,目前传统筛选方法以高亲和力为指标选择CAR分子,无法区分肿瘤细胞和正常细胞。在临床中,肿瘤特异性不高的CAR-T细胞在杀伤癌细胞的同时会攻击正常细胞,从而对患者正常生理功能产生副作用。此外,CAR除了特异性识别肿瘤靶抗原以激活T细胞发挥杀伤功能,其本身CAR分子在T细胞表面的表达密度,折叠构象,以及共刺激因子等结构特性都可能会激活T细胞的非抗原依赖的信号,被称为Tonic信号。当这种Tonic信号过强时,在没有靶抗原刺激下,该信号便可过度激活T细胞,诱导T细胞分化,加速T细胞耗竭,从而减少CAR-T在体内的存续性,进而影响其抗肿瘤功能。因此,开发同时能够评价CAR以及TCR分子亲和性、特异性和Tonic信号的高效甚至高通量的评估体系,是推动CAR-T和TCR-T疗法进一步拓展的关键步骤。CAR and TCR-specific molecular sequence design and screening, as well as structure optimization and evaluation are the most critical issues faced by major companies and academic institutions in the development of CAR-T and TCR-T products. For example, the current traditional screening method uses high affinity as an indicator to select CAR molecules, which cannot distinguish tumor cells from normal cells. In the clinic, CAR-T cells with low tumor specificity will attack normal cells while killing cancer cells, thus causing side effects on the normal physiological functions of patients. In addition, in addition to specific recognition of tumor target antigens to activate T cells to play a killing function, CAR molecules themselves have structural characteristics such as expression density, folding conformation, and co-stimulatory factors on the surface of T cells, which may activate T cells in an antigen-independent manner. The signal is called Tonic signal. When this Tonic signal is too strong, without the stimulation of the target antigen, the signal can over-activate T cells, induce T cell differentiation, and accelerate T cell exhaustion, thereby reducing the persistence of CAR-T in the body and affecting its anti-tumor effect. Tumor function. Therefore, the development of an efficient and even high-throughput evaluation system that can simultaneously evaluate the affinity, specificity, and Tonic signal of CAR and TCR molecules is a key step to promote the further expansion of CAR-T and TCR-T therapies.
Jurkat细胞是人白血病T淋巴细胞,具有原代T淋巴细胞的相应特点与功能,表面表达CD3等抗原,通过基因工程改造可成为用于CD3双抗以及CAR或TCR分子特异性评估的效应细胞。目前常用的如Jurkat-NFAT-LUC细胞,该效应细胞构建的原理是基于TCR/CD3复合物或CAR分子被靶向刺激后导致细胞内PLC-γ的磷酸化和活化,进而激活NFAT通路的转录,从而使NFAT-RE介导的荧光产生,最终利用荧光信号的强弱来反应抗体或CAR分子的特异性。与NFAT相类似的还有如基于41-BB或CD69信号通路构建的Jurkat效应细胞,但是这些基因的表达调控不仅通过直接的抗原刺激而被激活,而且还被其他炎症介质(例如I型干扰素和白介素)间接激活。因此,并不是很合适用于Tonic信号的评估。Nur77(NR4A1)作为核受体家族转录因子,它的表达可作为淋巴细胞抗原特异性激活的分子标志物,已经在人胸腺组织和基因报告小鼠中得到证实,同时在小鼠模型中也证明它对I型干扰素或细胞因子刺激没有反应。Jurkat cells are human leukemia T lymphocytes, which have the corresponding characteristics and functions of primary T lymphocytes, and express CD3 and other antigens on the surface. Through genetic engineering, they can become effector cells for CD3 double antibody and CAR or TCR molecular specificity assessment. Currently commonly used Jurkat-NFAT-LUC cells, the principle of effector cell construction is based on the phosphorylation and activation of intracellular PLC-γ after the TCR/CD3 complex or CAR molecule is targeted to activate the transcription of the NFAT pathway. , so that the fluorescence mediated by NFAT-RE is generated, and finally the intensity of the fluorescence signal is used to reflect the specificity of the antibody or CAR molecule. Similar to NFAT, there are Jurkat effector cells based on 41-BB or CD69 signaling pathways, but the expression regulation of these genes is not only activated by direct antigenic stimulation, but also by other inflammatory mediators (such as type I interferon and interleukins) are indirectly activated. Therefore, it is not very suitable for the evaluation of Tonic signal. Nur77 (NR4A1) is a nuclear receptor family transcription factor, and its expression can be used as a molecular marker of lymphocyte antigen-specific activation. It has been confirmed in human thymus tissue and gene reporter mice, and it has also been demonstrated in mouse models It does not respond to type I interferon or cytokine stimulation.
因此,本发明提供了一种基于Nur77信号通路的基因工程改造的Jurkat效应细胞的构建方法以及该效应细胞的具体用途,对CAR或者TCR分子的功能评估具有重大意义。Therefore, the present invention provides a method for constructing genetically engineered Jurkat effector cells based on the Nur77 signaling pathway and the specific use of the effector cells, which are of great significance to the functional evaluation of CAR or TCR molecules.
发明内容Contents of the invention
本发明的目的在于解决传统的Jurkat效应细胞面临的无法同时高效精准的检测CAR以及TCR分子亲和性、抗原依赖的特异性信号以及非抗原依赖的Tonic信号等问题。通过基因编辑的策略,构建一种基于Nur77信号通路的Jurkat效应细胞,可同时高效精准并且快捷方便的评估CAR或TCR分子的抗原依赖的特异性信号以及非抗原依赖的Tonic信号。The purpose of the present invention is to solve the problems faced by traditional Jurkat effector cells, such as the inability to efficiently and accurately detect CAR and TCR molecular affinity, antigen-dependent specific signals and antigen-independent Tonic signals. Through a gene editing strategy, a Jurkat effector cell based on the Nur77 signaling pathway is constructed, which can efficiently, accurately, quickly and conveniently evaluate the antigen-dependent specific signals and antigen-independent Tonic signals of CAR or TCR molecules.
为实现上述目的,本发明提供了一种构建Jurkat效应细胞的方法,包括以下具体步骤:To achieve the above object, the present invention provides a method for constructing Jurkat effector cells, comprising the following specific steps:
通过在Jurkat细胞中对Nur77基因终止密码子区域进行基因编辑的同时,将报告基因定点并同框敲入Nur77基因的编码框,以保证报告基因的表达调控同内源性Nur77基因的表达一致。By editing the stop codon region of the Nur77 gene in Jurkat cells, the reporter gene was targeted and knocked into the coding frame of the Nur77 gene in the same frame to ensure that the expression regulation of the reporter gene was consistent with the expression of the endogenous Nur77 gene.
较佳的,将基因编辑物质递送至Jurkat细胞所使用的基因编辑方法可以是ZFN、TALEN或/和CRISPR-Cas9等;优选CRISPR-Cas9,Cas9可以为SpCas9、SaCas9、SpCas9-HF、eSpCas9、xCas9、cpf1或其它不同菌属的Cas9;更优选SpCas9。Preferably, the gene editing method used to deliver the gene editing material to Jurkat cells can be ZFN, TALEN or/and CRISPR-Cas9, etc.; preferably CRISPR-Cas9, Cas9 can be SpCas9, SaCas9, SpCas9-HF, eSpCas9, xCas9 , cpf1 or other Cas9 of different bacterial genera; more preferably SpCas9.
较佳的,基因编辑物质可以是质粒、病毒、DNA、mRNA或/和RNA蛋白复合体;优选RNA蛋白复合体或/和同源修复的模板dsDNA。Preferably, the gene editing substance can be plasmid, virus, DNA, mRNA or/and RNA protein complex; preferably RNA protein complex or/and template dsDNA for homologous repair.
较佳的,基因编辑物质的递送可以使用脂质体、磷酸钙、DEAE-葡聚糖、电穿孔、显微注射或基因枪的转染方法;优选电穿孔转染。Preferably, the delivery of gene editing substances can use liposome, calcium phosphate, DEAE-dextran, electroporation, microinjection or gene gun transfection methods; electroporation transfection is preferred.
在一些实施方案中,CRISPR-Cas9基因编辑物质包括Cas9 mRNA、Cas9蛋白或/和sgRNA。优选使用Cas9蛋白和sgRNA形成的RNP复合体进行电转。RNP复合体可以通过直接混合温育Cas9蛋白和sgRNA获得,或者通过将二者混合于特定缓冲液(诸如电转缓冲液)中获得。In some embodiments, the CRISPR-Cas9 gene editing material includes Cas9 mRNA, Cas9 protein or/and sgRNA. Preferably, the RNP complex formed by Cas9 protein and sgRNA is used for electroporation. The RNP complex can be obtained by directly mixing and incubating Cas9 protein and sgRNA, or by mixing the two in a specific buffer (such as electroporation buffer).
在一些实施方案中,sgRNA的设计是首先明确敲入的基因组位点,利用该位点周围的DNA序列设计的。设计的原则是PAM区序列为NGG,其中N为A、T、C和G中的任一碱基。sgRNA包括靶向的crRNA序列和tracrRNA序列,其中crRNA可以是17、18、19、20、21或22个碱基,优选20个碱基。In some embodiments, the sgRNA is designed by first identifying the genomic site to be knocked in, and designing it using the DNA sequence surrounding the site. The design principle is that the sequence of the PAM region is NGG, wherein N is any base in A, T, C and G. sgRNA includes targeted crRNA sequence and tracrRNA sequence, wherein crRNA can be 17, 18, 19, 20, 21 or 22 bases, preferably 20 bases.
在一些实施方案中,sgRNA是未经修饰的或化学修饰的。化学修饰包括2-O-甲基化、3-硫代、2-O-甲基化结合3-硫代等。In some embodiments, the sgRNA is unmodified or chemically modified. Chemical modifications include 2-O-methylation, 3-thioxo, 2-O-methylation combined with 3-thioxo, and the like.
在一些实施方案中,5’和3’端3个碱基同时进行2-O-甲基化和3-硫代修饰。化学修饰可以发生在sgRNA的5’和3’端的1至10个碱基。设计好的sgRNA可以通过T7体外转录获得,也可以直接体外合成。In some embodiments, the 3 bases at the 5' and 3' ends are simultaneously 2-O-methylated and 3-thio-modified. Chemical modifications can occur between 1 and 10 bases at the 5' and 3' ends of the sgRNA. The designed sgRNA can be obtained by in vitro transcription of T7, or directly synthesized in vitro.
在一些实施方案中,基因编辑物质还包括用于编辑位点处同源修复的模板dsDNA。同源修复模板dsDNA包括左同源臂DNA、敲入的外源报告基因、右同源臂DNA。模版DNA的左同源臂与DNA切口5’端序列同源,右同源臂与DNA切口3’端序列同源。In some embodiments, the gene editing agent further includes template dsDNA for homologous repair at the edited site. The homology repair template dsDNA includes the left homology arm DNA, the knock-in exogenous reporter gene, and the right homology arm DNA. The left homology arm of the template DNA is homologous to the sequence at the 5' end of the DNA incision, and the right homology arm is homologous to the sequence at the 3' end of the DNA incision.
在一些实施方案中,左右同源臂片段长度可选50至1000个碱基,优选150个碱基。敲入的报告基因需要与内源性Nur77基因同框表达,以通过报告基因的表达来反映内源性基因的表达水平。报告基因可以是荧光蛋白基因、荧光素酶基因、氯霉素乙酰基转移酶基因、二氢叶酸还原酶基因、β-半乳糖苷酶基因和β葡萄糖醛酸酶基因中的至少一种;优选绿色荧光蛋白基因和荧光素酶基因组合的双重报告基因。In some embodiments, the length of the left and right homology arm fragments can be selected from 50 to 1000 bases, preferably 150 bases. The knock-in reporter gene needs to be expressed in the same frame as the endogenous Nur77 gene, so that the expression level of the endogenous gene can be reflected by the expression of the reporter gene. Reporter gene can be at least one in fluorescent protein gene, luciferase gene, chloramphenicol acetyltransferase gene, dihydrofolate reductase gene, β-galactosidase gene and β glucuronidase gene; Preferably Dual reporter for the combination of the green fluorescent protein gene and the luciferase gene.
在一些实施方案中,内源Nur77基因和报告基因以剪切肽隔开,剪切肽可选自T2A、P2A、E2A和F2A中的至少一种;优选P2A和T2A的组合。In some embodiments, the endogenous Nur77 gene and the reporter gene are separated by a cleavage peptide, which can be selected from at least one of T2A, P2A, E2A and F2A; preferably a combination of P2A and T2A.
在一些实施方案中,同源修复模板dsDNA合成完成后可克隆连接至质粒载体中,质粒载体可以是任意的一种,例如pUC57、pCDNA3.1、pCMV等,连接的位置也可以是灵活的。也可以不连接至质粒载体,直接进入后续步骤。In some embodiments, after the synthesis of the homologous repair template dsDNA is completed, it can be cloned and ligated into a plasmid vector. The plasmid vector can be any one, such as pUC57, pCDNA3.1, pCMV, etc., and the position of the ligation can also be flexible. It is also possible to proceed directly to the next steps without ligation to a plasmid vector.
在一些实施方案中,同源修复dsDNA的获得可以利用未修饰或修饰的引物进行PCR扩增,修饰引物采用5’-硫代磷酸结合5’-Biotin-TEG或5’-锁核酸进行修饰。模版dsDNA在经过PCR扩增后,可分别或联合采用以下几种方法进行纯化浓缩:各试剂公司的DNA纯化试剂盒纯化、各种DNA结合磁珠纯化、凝胶层析、离子层析、亲和层析、超滤管超滤、透析膜透析等。In some embodiments, homologous repair dsDNA can be obtained by using unmodified or modified primers for PCR amplification, and the modified primers are modified with 5'-phosphorothioate combined with 5'-Biotin-TEG or 5'-locked nucleic acid. After the template dsDNA is amplified by PCR, the following methods can be used separately or in combination for purification and concentration: purification of DNA purification kits from various reagent companies, purification of various DNA binding magnetic beads, gel chromatography, ion chromatography, affinity chromatography, etc. And chromatography, ultrafiltration tube ultrafiltration, dialysis membrane dialysis, etc.
在一个实施方案中,本发明还公开了一种在Nur77编码框后定点敲入绿色荧光蛋白基因和荧光素酶基因双重报告基因的Jurkat效应细胞的建立方法,将合成的gRNA同修复模板dsDNA电转染Jurkat细胞,经筛选得到所述Jurkat效应细胞。In one embodiment, the present invention also discloses a method for establishing a Jurkat effector cell in which a double reporter gene of green fluorescent protein gene and luciferase gene is knocked in behind the Nur77 coding frame, and the synthesized gRNA is electrically charged with the repair template dsDNA. Jurkat cells were transfected, and the Jurkat effector cells were obtained through screening.
较佳地,其包括以下步骤:Preferably, it includes the following steps:
步骤1、Nur77 gRNA序列的设计和评估;
步骤2、同源修复模板dsDNA的分子设计和制备;
步骤3、用电转的方法将cas9-sgRNA RNP复合物以及模板dsDNA转染进Jurkat细胞;
步骤4、采用荧光素酶活性测定的方法,筛选和验证报告基因敲入的细胞池;
步骤5、从报告基因敲入的细胞池中筛选和验证正确敲入的单细胞克隆。
其中所述sgRNA如SEQ ID NO:1~7中至少一项所示,优选为SEQ ID NO:1、SEQ IDNO:3或/和SEQ ID NO:6所示;其中所述修复模板dsDNA如SEQ ID NO:8所示。Wherein said sgRNA is as shown in at least one of SEQ ID NO:1~7, preferably as shown in SEQ ID NO:1, SEQ IDNO:3 or/and SEQ ID NO:6; Wherein said repair template dsDNA is as shown in SEQ ID NO:1 ID NO:8.
本发明还提供了一种Jurkat效应细胞的应用,其一方面可用于CAR、TCR和BCR分子以及抗体特异性功能筛选和评价,尤其是对CAR分子抗原依赖信号和非抗原依赖的Tonic信号的精准检测;其另一方面可用于高通量筛选抗体展示文库的CAR分子。The present invention also provides an application of Jurkat effector cells. On the one hand, it can be used for CAR, TCR and BCR molecules and antibody-specific function screening and evaluation, especially for the precise precision of CAR molecule antigen-dependent signals and non-antigen-dependent Tonic signals. Detection; on the other hand, it can be used for high-throughput screening of CAR molecules of antibody display libraries.
本发明的优点是:选择了在Jurkat细胞中同时将两种报告基因(GFP和luciferase基因)定点敲入Nur77基因的编码框,以构建一种基于Nur77信号通路的Jurkat效应细胞。该效应细胞可通过流式和荧光素酶实验来测定Nur77信号强弱以评估CAR或TCR的特异性功能。The advantage of the present invention is that two reporter genes (GFP and luciferase gene) are simultaneously knocked into the coding frame of the Nur77 gene in Jurkat cells to construct a Jurkat effector cell based on the Nur77 signaling pathway. The effector cells can be used to measure the strength of Nur77 signal by flow cytometry and luciferase experiments to evaluate the specific function of CAR or TCR.
1、通过选择靶向Nur77信号通路构建效应细胞,相比现有技术,可以更精准的测定CAR或TCR分子非抗原依赖的Tonic信号,更利于快速筛选和评估出较优的CAR或TCR分子用于体内或临床验证,有利于加速CAR-T或TCR-T项目的研发进程。1. By selecting and targeting the Nur77 signaling pathway to construct effector cells, compared with existing technologies, it can more accurately measure the antigen-independent Tonic signal of CAR or TCR molecules, which is more conducive to rapid screening and evaluation of better CAR or TCR molecules for use In vivo or clinical verification will help accelerate the research and development process of CAR-T or TCR-T projects.
2、通过选择双重报告基因,实验方法上选择将更加灵活和方便。由于多数CAR分子在抗原刺激下将诱发T细胞上CAR分子的内吞,不适合流式精准检测CAR阳性细胞群的抗原特异性信号,因此,可选择测定荧光素酶来代替流式检测GFP信号,更利于综合评估出最优的CAR或TCR分子。2. By choosing dual reporter genes, the choice of experimental methods will be more flexible and convenient. Since most CAR molecules will induce the endocytosis of CAR molecules on T cells under antigen stimulation, it is not suitable for accurate detection of antigen-specific signals of CAR-positive cell populations by flow cytometry. It is more conducive to the comprehensive evaluation of the optimal CAR or TCR molecule.
3、目前CAR分子基本来源于已经经过亲和性和特异性验证的抗体序列的scFv或VHH,而大量的实验结果也表明优异的抗体分子并不一定适合在CAR-T上使用。因此,适合CAR-T的CARs分子和结构的高通量筛选技术平台需要建立和完善。而本发明构建的Jurkat效应细胞,将非常适合用于抗体展示文库起始的CAR分子高通量筛选,相比传统抗体文库的多轮淘选和验证,基于Jurkat效应细胞的筛选流程将更方便、更快捷和更经济,筛选出的CAR分子和结构本身就是为CAR-T量身定制的。3. At present, CAR molecules are basically derived from scFv or VHH of antibody sequences that have been verified for affinity and specificity, and a large number of experimental results also show that excellent antibody molecules are not necessarily suitable for use in CAR-T. Therefore, a high-throughput screening technology platform for CARs molecules and structures suitable for CAR-T needs to be established and improved. The Jurkat effector cells constructed by the present invention are very suitable for high-throughput screening of CAR molecules initiated by antibody display libraries. Compared with multiple rounds of panning and verification of traditional antibody libraries, the screening process based on Jurkat effector cells will be more convenient , faster and more economical, the screened CAR molecules and structures are tailor-made for CAR-T.
4.本发明方法可以高效地建立Nur77位点定点同框敲入LUC和GFP双重报告基因的稳定细胞系。4. The method of the present invention can efficiently establish a stable cell line in which LUC and GFP dual reporter genes are knocked in at the Nur77 site in-frame.
附图说明Description of drawings
图1是基于Nur77信号通路的Jurkat效应细胞构建示意图,Figure 1 is a schematic diagram of the construction of Jurkat effector cells based on the Nur77 signaling pathway,
图2是基于Nur77信号通路的Jurkat效应细胞工作原理图,Figure 2 is a schematic diagram of the working principle of Jurkat effector cells based on the Nur77 signaling pathway,
图3是基因编辑细胞池荧光素酶的表达检测,Figure 3 is the expression detection of gene edited cell pool luciferase,
图4是单细胞克隆荧光素酶的表达检测,Fig. 4 is the expression detection of single cell clone luciferase,
图5是Jurkat效应细胞单细胞克隆基因型鉴定,Figure 5 is the genotype identification of single cell clones of Jurkat effector cells,
图6是MSLN CAR表达以及非抗原依赖的Tonic信号检测,Figure 6 shows MSLN CAR expression and antigen-independent Tonic signal detection,
图7是MSLN CAR抗原依赖信号的检测,Figure 7 is the detection of MSLN CAR antigen-dependent signal,
图8是MSLN CAR抗原依赖和非抗原依赖信号的比较分析。Figure 8 is a comparative analysis of MSLN CAR antigen-dependent and antigen-independent signals.
具体实施方式Detailed ways
为了能够更清楚地理解本发明的技术内容,特举以下实施例结合附图详细说明。应理解,这些实施例仅用于说明本发明而不用于限制本发明的范围。In order to understand the technical content of the present invention more clearly, the following embodiments are given in detail in conjunction with the accompanying drawings. It should be understood that these examples are only used to illustrate the present invention and are not intended to limit the scope of the present invention.
下列实施例中未注明具体条件的实验方法,通常按照常规条件或按照制造厂商所建议的条件。实施例中所用到的各种常用生物或化学试剂,均为市售产品。For the experimental methods without specific conditions indicated in the following examples, usually follow the conventional conditions or the conditions suggested by the manufacturer. Various commonly used biological or chemical reagents used in the examples are all commercially available products.
实施例1:靶向Nur77位点的sgRNA设计合成和筛选Example 1: Design, synthesis and screening of sgRNA targeting Nur77 site
为了实现高效的将报告基因定点插入Nur77基因的编码框,将选择Nur77终止密码子前后大约50bp,共约100bp序列,通过在线sgRNA设计网址(http://crispor.tefor.net/)进行sgRNA设计,筛选评分较高的7条序列进行体外合成(由南京金斯瑞提供sgRNA合成服务)。优选的,在本实施例中所有sgRNA在5'端和3'端各3个碱基均进行3’-硫代和2’-O-甲基化修饰,以使sgRNA更稳定而不容易在转导入细胞后被核酸酶迅速降解。化学合成的sgRNA序列详见表1(Nur77 sgRNA列表及切割效率)In order to achieve efficient insertion of the reporter gene into the coding frame of the Nur77 gene, about 50 bp before and after the stop codon of Nur77 will be selected, with a total of about 100 bp sequence, and the sgRNA design will be carried out through the online sgRNA design website (http://crispor.tefor.net/) , and screened 7 sequences with higher scores for in vitro synthesis (sgRNA synthesis service provided by Nanjing GenScript). Preferably, in this embodiment, all sgRNAs are modified with 3'-sulfo and 2'-O-methylation at the 3' end and 3' end respectively, so as to make the sgRNA more stable and less prone to After transfection into cells, it is rapidly degraded by nucleases. The chemically synthesized sgRNA sequence is shown in Table 1 (Nur77 sgRNA list and cutting efficiency)
表1Table 1
为了筛选最佳的sgRNA,将合成的200pmol sgRNA分别与100pmol TrueCutTMCas9蛋白(购买自Thermo Fisher)混匀后室温孵育20min;使用LONZA Nucleofector System,按照电转推荐程序CL-120电转RNP至5E5 Jurkat细胞中,电转后的细胞立即转移至含预热培养基的12孔板中,标记好名称。3~5天后,取电转后的细胞根据基因组DNA提取试剂盒说明书(TIANGEN)抽提基因组DNA,未经编辑的野生型Jurkat基因组作为对照。通过切割位点前后设计的特异性引物Nur77-SF(SEQ ID NO:9)与Nur77-SR(SEQ ID NO:10),PCR扩增基因编辑区域以进行Sanger测序。测序结果同对照序列对比,以检测相应sgRNA的特异性编辑效率。具体编辑效率是通过在线分析工具ICE Analysis进行分析(https://ice.synthego.com),分析结果如表1所列。结果显示SEQ ID NO:1、SEQ ID NO:3和SEQ ID NO:6具有更高的编辑效率。In order to screen the best sgRNA, the synthetic 200pmol sgRNA was mixed with 100pmol TrueCut TM Cas9 protein (purchased from Thermo Fisher) and incubated at room temperature for 20min; using LONZA Nucleofector System, according to the electroporation recommended procedure CL-120, RNP was electroporated into 5E5 Jurkat cells In , the cells after electroporation were immediately transferred to a 12-well plate containing pre-warmed medium, and the names were marked. After 3 to 5 days, the cells after electroporation were taken to extract genomic DNA according to the instructions of the genomic DNA extraction kit (TIANGEN), and the unedited wild-type Jurkat genome was used as a control. Using specific primers Nur77-SF (SEQ ID NO: 9) and Nur77-SR (SEQ ID NO: 10) designed before and after the cutting site, the gene editing region was amplified by PCR for Sanger sequencing. The sequencing results were compared with the control sequence to detect the specific editing efficiency of the corresponding sgRNA. The specific editing efficiency was analyzed through the online analysis tool ICE Analysis (https://ice.synthego.com), and the analysis results are listed in Table 1. The results showed that SEQ ID NO:1, SEQ ID NO:3 and SEQ ID NO:6 had higher editing efficiency.
实施例2:同源修复模板dsDNA的分子设计和制备Example 2: Molecular Design and Preparation of Homologous Repair Template dsDNA
本发明构建的Jurkat效应细胞的基因改造方案是首先利用CRISPR-Cas9对Nur77基因组位点的终止密码子区域产生DNA切口,进而利用同源修复模板dsDNA(包含报告基因)对DNA切口进行同源重组修复,最终将报告基因LUC和GFP定点敲入Nur77基因编码框内,该基因改造可使定点导入LUC和GFP基因,利用内源基因Nur77启动子转录表达。具体的构建示意图如图1所示。同源修复模板dsDNA包括两大部分:The genetic modification scheme of the Jurkat effector cells constructed in the present invention is to first use CRISPR-Cas9 to generate a DNA nick in the stop codon region of the Nur77 genomic site, and then use the homologous repair template dsDNA (including the reporter gene) to perform homologous recombination on the DNA nick Repair, and finally knock the reporter genes LUC and GFP into the coding frame of the Nur77 gene. This genetic modification can make the LUC and GFP genes into the site, and use the endogenous gene Nur77 promoter to transcribe and express. The specific construction diagram is shown in Figure 1. Homologous repair template dsDNA consists of two parts:
a.左右同源臂:左右同源臂主要用于识别目的DNA,并进行重组交换,为了使敲入基因能正确表达,将敲入基因定点到Nur77基因最后一个外显子的3’端区域。同时,为保证选择的sgRNA不会对修复模板进行编辑,故在左同源臂的互补区域进行了个别碱基的同义突变。另外,同源臂的长短对整个基因敲入的效率较为重要,一般同源臂越长,敲入效率会越高,但是整个基因敲入序列的长度是受限的,鉴于本发明需敲入的报告基因长度偏长,优选的,故本实施例选择切割位点上下游大约150bp的序列作为同源臂。a. Left and right homology arms: The left and right homology arms are mainly used to identify the target DNA and carry out recombination and exchange. In order to ensure the correct expression of the knock-in gene, the knock-in gene is targeted to the 3' end region of the last exon of the Nur77 gene . At the same time, in order to ensure that the selected sgRNA will not edit the repair template, a synonymous mutation of individual bases was carried out in the complementary region of the left homology arm. In addition, the length of the homology arm is more important to the efficiency of the entire gene knock-in. Generally, the longer the homology arm is, the higher the knock-in efficiency will be. However, the length of the entire gene knock-in sequence is limited. The length of the reporter gene is relatively long, which is preferred, so in this embodiment, a sequence about 150 bp upstream and downstream of the cleavage site is selected as the homology arm.
b.报告基因:本发明选择同时敲入两个报告基因,荧光素酶基因LUC和绿色荧光蛋白基因GFP。为了保证插入的两个基因能够同内源的Nur77基因表达一致,本发明在这三个基因之间加入了剪切肽,本实施例选择了P2A和T2A的组合。b. Reporter gene: In the present invention, two reporter genes, luciferase gene LUC and green fluorescent protein gene GFP, are selected to be knocked in simultaneously. In order to ensure that the two inserted genes can be expressed consistently with the endogenous Nur77 gene, the present invention added a cleavage peptide between these three genes, and the combination of P2A and T2A was selected in this embodiment.
同源修复模板dsDNA的所有组分按顺序设计后,其核苷酸序列如SEQ ID NO:8所示。该序列基因合成后(由上海生工提供基因合成服务)直接克隆到克隆质粒pUC57上。以该质粒为模板,以设计的未修饰同源模板引物Nur77-LG-F(SEQ ID NO:11)和Nur77-LG-R(SEQID NO:12),PCR大量扩增用于同源修复的dsDNA分子。PCR产物经MN试剂盒纯化回收以获得高浓度和高纯度的同源修复dsDNA(SEQ ID NO:8)。After all the components of the homologous repair template dsDNA are sequentially designed, its nucleotide sequence is shown in SEQ ID NO:8. After gene synthesis of this sequence (gene synthesis service provided by Shanghai Sangong), it was directly cloned into the cloning plasmid pUC57. Using the plasmid as a template and the designed unmodified homologous template primers Nur77-LG-F (SEQ ID NO: 11) and Nur77-LG-R (SEQ ID NO: 12), a large amount of PCR amplification for homologous repair dsDNA molecules. The PCR product was purified and recovered by the MN kit to obtain high-concentration and high-purity homologously repaired dsDNA (SEQ ID NO: 8).
实施例3:Jurkat效应细胞的构建Embodiment 3: Construction of Jurkat effector cells
1)Jurkat细胞的电转1) Electroporation of Jurkat cells
针对每条sgRNA,取1E6个Jurkat细胞进行电转以递送spCas9蛋白(购买自ThermoFisher)、sgRNA和同源修复dsDNA(实施例2中获得的PCR纯化产物),从而一次性实现剪切Nur77基因组位点和敲入报告基因,电转过程使用Lonza电转试剂盒(货号:V4XP-3024)和Lonza电转设备(4D-Nucleofector)。具体流程为:配制Lonza电转缓冲液后,将100pmolspCas9蛋白分别与设计合成的200pmol sgRNA-01和sgRNA-03混匀后室温孵育20min,再加入6μg同源修复dsDNA。为了进一步增强编辑效率,可选择再加入200pmol Alt-RElectroporation Enhancer(购买自IDT),室温混匀后与1E6 Jurkat细胞沉淀混匀并加入电转杯中,按照推荐程序CL-120电击,电击完成后加入至含2ml预热培养基的6孔板中,标记好名称。可选择连续重复2~3次上述电转过程。For each sgRNA, 1E6 Jurkat cells were electroporated to deliver spCas9 protein (purchased from ThermoFisher), sgRNA and homologous repair dsDNA (PCR purification product obtained in Example 2), so as to cut the Nur77 genomic site at one time And knocking in the reporter gene, the electroporation process uses the Lonza electroporation kit (product number: V4XP-3024) and the Lonza electroporation equipment (4D-Nucleofector). The specific process is as follows: after preparing Lonza electroporation buffer, mix 100 pmol spCas9 protein with 200 pmol sgRNA-01 and sgRNA-03 designed and synthesized, and incubate at room temperature for 20 minutes, then add 6 μg homologous repair dsDNA. In order to further enhance the editing efficiency, you can choose to add 200 pmol Alt-RElectroporation Enhancer (purchased from IDT), mix it at room temperature, mix it with the 1E6 Jurkat cell pellet, and add it to the electroporation cup. Electric shock according to the recommended procedure CL-120, add after electroporation Transfer to a 6-well plate containing 2ml of pre-warmed medium and mark the name. You can choose to repeat the
2)单细胞克隆筛选验证2) Single cell clone screening verification
a.细胞池验证:Jurkat细胞电穿孔后继续培养7天,采用荧光素酶实验来检测细胞池中报告基因的敲入效果。由于T细胞在PMA和Ionomycin两种激动剂的刺激下,会诱导和激活Nur77基因的表达。因此,当报告基因成功敲入Nur77基因座的话,其报告基因也会随着Nur77的激活而同时表达,故将取1E5个所有经编辑的细胞,同包括未编辑的对照组Jurkat细胞于96孔板。针对每种细胞,设置两组和两个复孔,一组均添加2.5μM Ionomycin和20ng/mL PMA(购买自碧云天)作为实验组,另一组未添加作为对照组。37度培养箱放置2h后,每孔加入50uL荧光底物One-Glo(购买自Promega),利用荧光光度仪(Envision)测定荧光值,并分析结果。结果分析如图3所示。该结果显示,sgRNA-01和sgRNA-03组细胞池中,相比对照都具有正确敲入的细胞克隆存在,其中在两次重复中,sgRNA-01组的编辑效率都要高于sgRNA-03组。a. Cell pool verification: Jurkat cells were cultured for 7 days after electroporation, and luciferase assay was used to detect the knock-in effect of the reporter gene in the cell pool. Under the stimulation of two agonists, PMA and Ionomycin, T cells will induce and activate the expression of Nur77 gene. Therefore, when the reporter gene is successfully knocked into the Nur77 locus, the reporter gene will also be expressed simultaneously with the activation of Nur77, so 1E5 all edited cells, including the unedited control Jurkat cells, will be taken in 96 wells plate. For each type of cell, two groups and two duplicate wells were set up, one group was added with 2.5 μM Ionomycin and 20ng/mL PMA (purchased from Beyond) as the experimental group, and the other group was not added as the control group. After being placed in a 37-degree incubator for 2 hours, 50 uL of fluorescent substrate One-Glo (purchased from Promega) was added to each well, and the fluorescence value was measured with a fluorophotometer (Envision), and the results were analyzed. The result analysis is shown in Figure 3. The results show that in the cell pools of the sgRNA-01 and sgRNA-03 groups, there are cell clones with correct knock-in compared to the control, and in the two repetitions, the editing efficiency of the sgRNA-01 group is higher than that of the sgRNA-03 Group.
b.单细胞克隆筛选:采取有限稀释法,将sgRNA-01组的细胞按每孔0.5和1接种到96孔板中,37度CO2培养箱中培养10~14天,挑选明显单克隆的细胞至48孔板中继续放大培养。培养4天后,每孔取出一半细胞采用荧光素酶实验方法进行初筛,具体方法同前。大致流程为:从挑取的58个克隆中,取出100uL(大约1半的细胞)于黑色不透明96孔板中,每孔各加添加2.5μM Ionomycin和20ng/mL PMA,反应2h后,每孔加入50uL荧光底物One-Glo(购买自Promega),利用荧光光度仪(Envision)测定荧光值,分析结果如图4所示。最终挑选细胞增殖较好以及荧光信号较高的NLG-1、NLG-8、NLG-31、NLG-46和NLG-57号单细胞克隆做进一步的放大扩增及冻存,同时提取其中的基因组DNA做进一步的基因型鉴定和测序分析。基因型鉴定引物为:Nur77-SF、Nur77-SR和LUC-GFP-R(SEQ ID NO:13)。PCR电泳图如图5所示,结果显示NLG-8为纯合子,即两个等位基因均插入报告基因,而其它4个克隆为杂合子,即只有一个等位基因顺利插入报告基因,而另外一个等位基因为野生型。进一步测序结果证实5个克隆在Nur77的最后一个外显子的3’端均正确插入设计的报告基因。b. Screening of single-cell clones: Inoculate the cells of the sgRNA-01 group into 96-well plates at 0.5 and 1 per well by limiting dilution method, culture them in a 37-degree CO 2 incubator for 10-14 days, and select the cells with obvious monoclonal Cells were transferred to 48-well plates to continue to scale up. After culturing for 4 days, half of the cells were taken out from each well for primary screening by the luciferase assay method, the specific method being the same as above. The general process is as follows: from the 58 clones picked, take 100uL (about half of the cells) into a black opaque 96-well plate, add 2.5μM Ionomycin and 20ng/mL PMA to each well, and react for 2 hours. 50uL of fluorescent substrate One-Glo (purchased from Promega) was added, and the fluorescence value was measured with a fluorophotometer (Envision). The analysis results are shown in FIG. 4 . Finally, single-cell clones NLG-1, NLG-8, NLG-31, NLG-46, and NLG-57 with better cell proliferation and higher fluorescence signals were selected for further amplification and cryopreservation, and the genome was extracted at the same time. DNA for further genotyping and sequencing analysis. The genotyping primers are: Nur77-SF, Nur77-SR and LUC-GFP-R (SEQ ID NO: 13). The PCR electrophoresis graph is shown in Figure 5. The results showed that NLG-8 was homozygous, that is, both alleles were inserted into the reporter gene, while the other four clones were heterozygous, that is, only one allele was successfully inserted into the reporter gene, and The other allele is wild type. Further sequencing results confirmed that all five clones were correctly inserted with the designed reporter gene at the 3' end of the last exon of Nur77.
实施例4:Jurkat效应细胞用于CAR分子的功能筛选和评估Example 4: Jurkat effector cells are used for functional screening and evaluation of CAR molecules
本实施例选择MSLN-BBz CAR分子的功能筛选流程作为实例介绍,其他CAR或TCR分子或结构的功能筛选及评估流程基本类似。In this example, the functional screening process of the MSLN-BBz CAR molecule is selected as an example, and the functional screening and evaluation processes of other CAR or TCR molecules or structures are basically similar.
CAR-Jurkat细胞的制备Preparation of CAR-Jurkat cells
将构建及制备的不同MSLN-BBz CAR分子(共6条,包括一条经过Novartis临床验证的BMK分子M5)的慢病毒感染实施例3中筛选验证的Jurkat效应细胞株NLG-8#克隆,MOI等于1。感染后的细胞转移至37℃,5%CO2细胞培养箱培养3~7天,每隔2天换液或传代。The constructed and prepared different MSLN-BBz CAR molecules (6 in total, including a BMK molecule M5 clinically verified by Novartis) were infected with the Jurkat effector cell line NLG-8# clone verified in Example 3 with an MOI equal to 1. The infected cells were transferred to a 37°C, 5% CO 2 cell incubator for 3 to 7 days, and the medium was changed or passaged every 2 days.
MSLN CAR表达以及非抗原依赖Tonic信号的检测MSLN CAR expression and detection of non-antigen-dependent Tonic signal
取培养3~7天的MSLN CAR-Jurkat细胞,通过FACS的方法检测MSLN CAR的表达以及非抗原依赖的Tonic信号,具体检测流程为:The MSLN CAR-Jurkat cells cultured for 3 to 7 days were taken, and the expression of MSLN CAR and the non-antigen-dependent Tonic signal were detected by FACS. The specific detection process was as follows:
a.抗体的染色:每组取1E5的细胞于96孔板,350g离心5min,去除上清,加入PBS洗1遍后,加入Fc标记的Mesothelin抗原(购买自Acro)4度孵育30min。离心,PBS洗1遍后,加入AF647标记的抗人Fc二抗(购买自Jackson)4度孵育。孵育30min后离心,并用100uL PBS重悬细胞,流式检测。其中BMK平行设置两组,一组为阳性对照组,在抗体孵育前于96孔板中添加2.5μM Ionomycin和20ng/mL PMA预处理1h,而另一组未处理。a. Antibody staining: Take 1E5 cells from each group in a 96-well plate, centrifuge at 350g for 5 minutes, remove the supernatant, add PBS to wash once, add Fc-labeled Mesothelin antigen (purchased from Acro) and incubate at 4 degrees for 30 minutes. Centrifuge, wash once with PBS, add AF647-labeled anti-human Fc secondary antibody (purchased from Jackson) and incubate at 4 degrees. Centrifuge after incubation for 30min, and resuspend the cells with 100uL PBS, and perform flow cytometric detection. Two groups of BMK were set up in parallel, one group was the positive control group, and 2.5 μM Ionomycin and 20 ng/mL PMA were added to the 96-well plate for pretreatment for 1 h before antibody incubation, while the other group was not treated.
b.流式检测及分析:经过染色的细胞通过BD流式仪进行FACS检测APC和FITC通道,流式结果采用FlowJo进行分析,结果如果6所示。FACS结果显示除了CAR-4#分子表达较差,其他CAR分子都有较好的表达。由于采用抗原检测CAR的表达,可以通过CAR表达的强弱反映其抗体序列的亲和性,而本次结果显示CAR-1#相比BMK具有较高的表达强度,而CAR-5#具有类似和CAR-2#具有较低的表达强度。因此采用Jurkat效应细胞,相比原代T细胞和传统的抗体亲和性检测,其感染效率高,简单方便和更经济。同时,通过检测CAR-Jurkat细胞中本底GFP的表达水平,可以反映CAR在未接受抗原刺激下的自激活程度,即Tonic信号。本实验结果显示BMK CAR具有非常低的GFP表达,说明其Tonic信号弱,当加入激动剂Ionomycin和PMA刺激后其CAR阳性群细胞会从GFP阴性转为阳性,表明本专利发明构建的Jurkat效应细胞特异很好。进一步的MSLN CAR分子的GFP表达,发现CAR-3#分子在CAR阳性群中具有很高的GFP表达,说明其Tonic信号很高,不适合作为CAR分子,而CAR-1#和CAR-5#具有和BMK一样较低的GFP表达水平,说明其Tonic信号都较弱,可作为进一步开发的候选CAR分子。b. Flow cytometry detection and analysis: The stained cells were detected by FACS with BD flow cytometer to detect APC and FITC channels, and the flow cytometry results were analyzed by FlowJo, and the results are shown in Figure 6. FACS results showed that except for the poor expression of CAR-4# molecule, other CAR molecules were well expressed. Since the expression of CAR is detected by antigen, the affinity of its antibody sequence can be reflected by the intensity of CAR expression, and this result shows that CAR-1# has a higher expression intensity than BMK, while CAR-5# has a similar and CAR-2# have lower expression intensity. Therefore, the use of Jurkat effector cells, compared with primary T cells and traditional antibody affinity testing, has a high infection efficiency, is simple, convenient and more economical. At the same time, by detecting the expression level of background GFP in CAR-Jurkat cells, it can reflect the self-activation degree of CAR without antigen stimulation, that is, Tonic signal. The results of this experiment show that BMK CAR has a very low expression of GFP, indicating that its Tonic signal is weak. After being stimulated by the agonist Ionomycin and PMA, the CAR-positive cells will turn from GFP-negative to positive, indicating that the Jurkat effector cells constructed in this patent invention Specific is good. Further GFP expression of CAR molecules in MSLN found that CAR-3# molecules had high GFP expression in the CAR-positive group, indicating that their Tonic signal was high and not suitable as CAR molecules, while CAR-1# and CAR-5# It has the same low GFP expression level as BMK, indicating that its Tonic signal is weak, and can be used as a candidate CAR molecule for further development.
MSLN CAR抗原依赖信号的检测Detection of MSLN CAR antigen-dependent signaling
由于多数靶点的CAR分子在受到抗原刺激后会介导CAR分子在细胞膜上的内吞,故采用FACS方法不能直接用于CAR分子抗原依赖信号的检测,因此,本发明采用CAR-Jurkat效应细胞在抗原和非抗原刺激下荧光素酶表达的强弱来反映CAR分子抗原依赖的信号,而该信号可进一步反映CAR的靶向特异性和杀伤功能。具体实验流程为:取培养3~7天的MSLNCAR-Jurkat细胞,根据CAR的表达水平,将所有组的CAR表达水平调整到一致水平。按1:1或2:1的效靶比,将CAR-Jurkat细胞分别与不同MSLN表达水平的靶细胞共孵育3~5小时。本实施例选择按1:1的效靶比,取各组经CAR表达水平调整一致后的CAR-Jurkat细胞分别与MSLN不表达的靶细胞A2780、MSLN弱表达的靶细胞SKOV3和MSLN高表达的靶细胞OVCAR3于黑色不透明96孔板中共孵育4小时,其中未感染CAR的Jurkat细胞作为对照组。每孔效应细胞或靶细胞的数量为4E4,设置2个复孔。共孵育4h后,每孔加入50uL荧光底物One-Glo(购买自Promega),并利用荧光光度仪(Envision)测定荧光值,分析结果如图7所示。荧光素酶的表达检测结果表明,CAR-1#和CAR-5#具有类似于BMK的靶向特异性激活,表现为在MSLN阴性细胞A2780的刺激下显示极低的荧光素酶的活性,在MSLN高表达细胞OVCAR3刺激下显示较高的荧光素酶活性,而在弱表达细胞SKOV3刺激下显示相对较弱的荧光素酶活性。综合分析图6非抗原依赖信号和图7抗原依赖信号的实验数据(如图8所示),就不难评价出CAR-1#和CAR-5#具有类似于BMK CAR分子的功能,表现为较低的非抗原依赖的Tonic信号和较高和较特异的抗原依赖的信号,可作为候选分子做进一步的体内验证或临床开发,而其他CAR分子将不值得做进一步的开发。Since the CAR molecules of most targets will mediate the endocytosis of CAR molecules on the cell membrane after being stimulated by antigens, the FACS method cannot be directly used for the detection of CAR molecule antigen-dependent signals. Therefore, the present invention uses CAR-Jurkat effector cells The intensity of luciferase expression under antigen and non-antigen stimulation reflects the antigen-dependent signal of CAR molecule, and this signal can further reflect the targeting specificity and killing function of CAR. The specific experimental procedure is as follows: MSLNCAR-Jurkat cells cultured for 3 to 7 days were taken, and the CAR expression levels of all groups were adjusted to a consistent level according to the CAR expression levels. According to the effect-to-target ratio of 1:1 or 2:1, CAR-Jurkat cells were co-incubated with target cells with different MSLN expression levels for 3-5 hours. In this example, the effect-to-target ratio of 1:1 was selected, and the CAR-Jurkat cells in each group after the CAR expression levels were adjusted to be consistent were compared with target cells A2780 with no MSLN expression, target cells with weak MSLN expression SKOV3, and target cells with high MSLN expression. Target cells OVCAR3 were co-incubated for 4 hours in a black opaque 96-well plate, and Jurkat cells not infected with CAR were used as a control group. The number of effector cells or target cells in each well is 4E4, and 2 duplicate wells are set. After co-incubating for 4 hours, 50 uL of fluorescent substrate One-Glo (purchased from Promega) was added to each well, and the fluorescence value was measured with a fluorophotometer (Envision). The analysis results are shown in FIG. 7 . The results of luciferase expression detection showed that CAR-1# and CAR-5# had target-specific activation similar to BMK, showing extremely low luciferase activity under the stimulation of MSLN-negative cell A2780, and in MSLN high-expressing cells showed higher luciferase activity under stimulation of OVCAR3, while weakly expressing cells of SKOV3 showed relatively weaker luciferase activity. Comprehensive analysis of the experimental data of non-antigen-dependent signals in Figure 6 and antigen-dependent signals in Figure 7 (as shown in Figure 8), it is not difficult to evaluate that CAR-1# and CAR-5# have functions similar to BMK CAR molecules, showing The lower non-antigen-dependent Tonic signal and the higher and more specific antigen-dependent signal can be used as candidate molecules for further in vivo verification or clinical development, while other CAR molecules will not be worthy of further development.
因此,从以上实例数据可以看出,基于本发明开发的Jurkat效应细胞可非常经济和快速高效的筛选出更合适的CAR分子用于进一步的CAR-T项目开发,对加速CAR-T项目的开发具有十分重要意义。Therefore, it can be seen from the above example data that the Jurkat effector cells developed based on the present invention can be very economical, fast and efficient to screen out more suitable CAR molecules for further CAR-T project development, and to accelerate the development of CAR-T projects is of great significance.
实施例5:Jurkat效应细胞用于展示文库CAR分子的筛选流程Example 5: Screening process of Jurkat effector cells for displaying library CAR molecules
本专利发明的Jurkat效应细胞除了可以用于抗体序列来源的scFv或VHH的筛选评估,也非常适合用于高通量筛选抗体展示文库的CAR分子。由于筛选出的CAR分子和结构本身就是为CAR-T量身定制的,因此将更方便、更经济和更高效。推荐的高效筛选流程为:The Jurkat effector cells of the invention can be used for the screening and evaluation of scFv or VHH derived from antibody sequences, and are also very suitable for high-throughput screening of CAR molecules of antibody display libraries. Since the screened CAR molecules and structures are tailor-made for CAR-T, it will be more convenient, economical and efficient. The recommended efficient screening process is:
淘选富集:采用特定抗原或靶细胞通过1~2轮初步淘选抗体(scFv)展示文库(包括但不限于是免疫文库或文库)以富集特定靶点的抗体序列。Panning and enrichment: 1-2 rounds of preliminary panning of antibody (scFv) display libraries (including but not limited to immune libraries or library) to enrich for antibody sequences for specific targets.
CAR病毒库的构建:设计通用引物以抗体展示文库基因组DNA为模板扩增抗体的scFv序列,并组装到常规二代CAR结构中,例如CD8sp-scFv-CD8Hinge-CD8TM-41BB-CD3z。最后转化大肠杆菌,并提取混合克隆的质粒,包装慢病毒或逆转录病毒,以构建CAR病毒库。Construction of the CAR virus library: Design universal primers to amplify the scFv sequence of the antibody using the genomic DNA of the antibody display library as a template, and assemble it into a conventional second-generation CAR structure, such as CD8sp-scFv-CD8Hinge-CD8TM-41BB-CD3z. Finally, transform Escherichia coli, extract the plasmids of mixed clones, and package lentiviruses or retroviruses to construct CAR virus libraries.
CAR-Jurkat细胞库的构建:将包装好的CAR病毒感染Jurkat细胞,以构建CAR-Jurkat细胞库。Construction of CAR-Jurkat cell bank: Infect Jurkat cells with packaged CAR virus to construct CAR-Jurkat cell bank.
CAR分子的筛选:取适当CAR-Jurkat细胞库与特异靶细胞共孵育,通过流式分选出GFP阳性群细胞,进一步培养或提取DNA,最后用CAR引物扩增出CAR序列,TA克隆,测序以获得初筛的CAR序列。如果获取的序列偏多可选择进行两轮或多轮重复筛选,对获取的序列可以按照实施例4做进一步的筛选验证。Screening of CAR molecules: Take an appropriate CAR-Jurkat cell bank and incubate with specific target cells, sort out GFP-positive cells by flow cytometry, further culture or extract DNA, and finally use CAR primers to amplify the CAR sequence, TA clone, and sequence To obtain the CAR sequence for primary screening. If too many sequences are obtained, two or more rounds of repeated screening can be selected, and the obtained sequences can be further screened and verified according to Example 4.
采用本专利发明的Jurkat效应细胞,按照推荐的筛选流程,最快可在一个月内筛选出较优的CAR分子用于进一步CAR-T项目的开发,十分经济和高效。Using the Jurkat effector cells invented by this patent, according to the recommended screening process, better CAR molecules can be screened within one month at the fastest for further development of CAR-T projects, which is very economical and efficient.
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| CN112899236A (en) * | 2020-12-31 | 2021-06-04 | 上海恒润达生生物科技有限公司 | Construction method and application of Nur77 GFP Jurkat report cell line |
| WO2022204071A1 (en) * | 2021-03-22 | 2022-09-29 | Juno Therapeutics, Inc. | Method to assess potency of viral vector particles |
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| CN116790646A (en) * | 2023-06-29 | 2023-09-22 | 徐州医科大学 | Method for evaluating CAR function and application thereof |
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