CN116103259A - Rational modification of L-threonine transaldolase and its integrated system for efficient synthesis of β-hydroxy-α-amino acids - Google Patents
Rational modification of L-threonine transaldolase and its integrated system for efficient synthesis of β-hydroxy-α-amino acids Download PDFInfo
- Publication number
- CN116103259A CN116103259A CN202211669398.9A CN202211669398A CN116103259A CN 116103259 A CN116103259 A CN 116103259A CN 202211669398 A CN202211669398 A CN 202211669398A CN 116103259 A CN116103259 A CN 116103259A
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- China
- Prior art keywords
- threonine
- transaldolase
- mutant
- asparagine
- serine
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
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Abstract
本发明公开了L‑苏氨酸转醛酶理性改造及其整合体系高效合成β‑羟基‑α‑氨基酸,属于生物催化工程领域。本发明将来自Burkholderia diffusa的L‑苏氨酸转醛酶,克隆基因于将其异源表达至E.coli BL21(DE3),研究其重组酶的酶学性质,和催化转化L‑threo‑对甲磺酰基苯丝氨酸功能。同时,对L‑苏氨酸转醛酶关键氨基酸位点进行突变,获得催化效率与立体选择性显著提升的突变株。本发明还高效的副产物乙醛消除体系引入L‑苏氨酸转醛酶介导的催化体系,构建整合系统;不仅消除了副产物对催化反应的抑制作用,而且通过添加辅助底物异丙醇提高底物的溶解性,同时实现反应所需辅因子NADH的原位再生。
The invention discloses the rational transformation of L-threonine transaldolase and its integration system to efficiently synthesize β-hydroxy-α-amino acids, belonging to the field of biocatalysis engineering. The present invention clones L-threo-aldolase from Burkholderia diffusa, expresses it heterologously to E.coli BL21 (DE3), studies the enzymatic properties of its recombinant enzyme, and catalyzes the transformation of L-threo-pair Methylsulfonylphenylserine function. At the same time, the key amino acid sites of L-threonine transaldolase were mutated to obtain mutants with significantly improved catalytic efficiency and stereoselectivity. The invention also introduces the efficient by-product acetaldehyde elimination system into the catalytic system mediated by L-threonine transaldolase to construct an integrated system; Alcohols increase the solubility of substrates while achieving in situ regeneration of the cofactor NADH required for the reaction.
Description
技术领域technical field
本发明涉及L-苏氨酸转醛酶理性改造及其整合体系高效合成β-羟基-α-氨基酸,属于生物催化工程领域。The invention relates to the rational transformation of L-threonine transaldolase and its integrated system for efficiently synthesizing β-hydroxyl-α-amino acids, belonging to the field of biocatalysis engineering.
背景技术Background technique
β-羟基-α-氨基酸(βHAAs)由于其结构和功能的多样性,在天然产物合成、多肽研究、药物开发、农业预防等方面的研究进展中发挥着重要作用。如L-threo-二羟基苯基丝氨酸,可是帕金森病的治疗药物和其他化合物如β-内酰胺化学合成的手性辅助物。L-threo-对甲磺酰基苯丝氨酸是合成甲砜霉素的重要中间体,甲砜霉素是一种氯霉素类广谱抗生素,对大部分革兰氏阴性菌具有很强的抗菌作用,对革兰氏阳性菌如溶血性链球菌、淋球菌、脑膜炎双球菌、肺类杆菌、霍乱弧菌、痢疾杆菌及流感杆菌等有较强抗菌作用,对厌氧杆菌族,立克次体,阿米巴原虫等也有一定的抗菌作用。在临床上主要治疗敏感菌如流感嗜血杆菌、大肠埃希菌、沙门菌属等所致的呼吸道、尿路、肠道等感染。L-threo-对硝基苯丝氨酸是合成无味氯霉素的重要中间体,无味氯霉素是氯霉素的一种,又称棕榈氯霉素,都属于氯霉素类抗生素,同样具有很强的抗菌作用,适合儿童口服,口服后在肠道内逐渐释放出氯霉素,效果比普通氯霉素更加持久。此外,其它βHAAs如对氟苯丝氨酸和苯丝氨酸等在医药以及多肽开发中都具有重要作用。β-Hydroxy-α-amino acids (βHAAs) play an important role in the research progress of natural product synthesis, peptide research, drug development, agricultural prevention, etc. due to their structural and functional diversity. For example, L-threo-dihydroxyphenylserine is a chiral auxiliary for the chemical synthesis of drugs for Parkinson's disease and other compounds such as β-lactam. L-threo-p-methylsulfonylphenylserine is an important intermediate in the synthesis of thiamphenicol, a broad-spectrum antibiotic of the chloramphenicol class, which has a strong antibacterial effect on most Gram-negative bacteria , has strong antibacterial effect on Gram-positive bacteria such as hemolytic streptococcus, Neisseria gonorrhoeae, Neisseria meningitidis, Bacteroides pneumophila, Vibrio cholerae, Shigella bacillus and influenza bacillus, etc. Body, amoeba, etc. also have certain antibacterial effect. Clinically, it mainly treats respiratory tract, urinary tract, and intestinal infections caused by sensitive bacteria such as Haemophilus influenzae, Escherichia coli, and Salmonella. L-threo-p-nitrophenylserine is an important intermediate for the synthesis of odorless chloramphenicol, which is a kind of chloramphenicol, also known as palm chloramphenicol, which belongs to chloramphenicol antibiotics and also has many Strong antibacterial effect, suitable for children to take orally, after oral administration, chloramphenicol is gradually released in the intestinal tract, and the effect is more durable than ordinary chloramphenicol. In addition, other βHAAs such as p-fluphenylserine and phenylserine play important roles in medicine and peptide development.
随着社会的快速发展,我国对原料药需求大大增长,一方面用于国内合成使用,同时,对国外的出口数量也大大增加,据了解,我国对氯霉素类药物进出口比例各占一半。目前国内主要通过化学法合成这些关键中间体,比如氯霉素主要采用对硝基苯乙酮化学法合成,该法由乙苯经硝化-氧化-溴化-成盐-水解-乙酰化-加成-还原-分解-分拆-二氯乙酰化而得氯霉素。化学法合成步骤繁杂,副产物多,立体选择性差以及对环境不友好。生物催化由于反应条件温和,对环境友好,反应几乎无副产物生成以及立体选择性高等优势备受关注。With the rapid development of society, my country's demand for raw materials has greatly increased. On the one hand, it is used for domestic synthesis, and at the same time, the export volume to foreign countries has also greatly increased. It is understood that my country's import and export of chloramphenicol drugs account for half of each. . At present, these key intermediates are mainly synthesized by chemical methods in China. For example, chloramphenicol is mainly synthesized by p-nitroacetophenone chemical method. Formation-reduction-decomposition-resolution-dichloroacetylation to obtain chloramphenicol. The synthetic steps of the chemical method are complicated, the by-products are many, the stereoselectivity is poor and the environment is not friendly. Biocatalysis has attracted much attention due to its mild reaction conditions, environmental friendliness, almost no by-product formation and high stereoselectivity.
L-苏氨酸转醛酶以L-苏氨酸为供体底物,各种芳香醛为受体底物,具有高立体选择性,合成的目标βHAAs效率高、产物光学纯度高。然而目前报道并表征的苏氨酸转醛酶数量寥寥无几,同时由于天然酶催化效率低,底物耐受差,副产物抑制等问题极大地限制了其工业应用。因而有必要挖掘及表征新型苏氨酸转醛酶,通过酶理性设计手段,提升其催化效率和工业应用属性,最终实现βHAAs的高效制备,打破国外技术垄断,实现自主知识产权的生物催化制备技术。L-threonine transaldolase uses L-threonine as a donor substrate and various aromatic aldehydes as acceptor substrates. It has high stereoselectivity, and can synthesize target βHAAs with high efficiency and high optical purity. However, the number of threonine transaldolases reported and characterized so far is very small. At the same time, due to the low catalytic efficiency of natural enzymes, poor substrate tolerance, and by-product inhibition, their industrial applications are greatly limited. Therefore, it is necessary to excavate and characterize new threonine transaldolase, improve its catalytic efficiency and industrial application properties through enzyme rational design, and finally realize the efficient preparation of βHAAs, break the monopoly of foreign technology, and realize the biocatalytic preparation technology with independent intellectual property rights .
发明内容Contents of the invention
本发明挖掘了一种新型来自Burkholderia diffusa的L-苏氨酸转醛酶,克隆到Escherichia coli BL21(DE3)中实现高效表达,对重组酶的酶学性质与功能进行验证。为了进一步提高酶的工业属性,通过同源建模,分子对接以及多重序列比对等方法对L-苏氨酸转醛酶特定的氨基酸位点进行突变,获得催化效率与立体选择性明显提升的突变株。在此基础上,引入了高效的副产物乙醛消除系统到L-苏氨酸转醛酶介导的催化体系,构建整合体系。消除副产物乙醛等对反应的抑制作用,提高底物的溶解性,同时副产物消除介导酶可以催化辅助底物,实现辅因子NADH的原位再生。整合体系显著提升L-苏氨酸转醛酶催化效率及立体选择性,实现了βHAAs的高效生物合成,为其工业化生产奠定了坚实的基础。In the present invention, a novel L-threonine transaldolase from Burkholderia diffusa was excavated, cloned into Escherichia coli BL21 (DE3) to achieve high-efficiency expression, and the enzymatic properties and functions of the recombinant enzyme were verified. In order to further improve the industrial properties of the enzyme, the specific amino acid sites of L-threonine transaldolase were mutated by methods such as homology modeling, molecular docking and multiple sequence alignment, and the catalytic efficiency and stereoselectivity were significantly improved. mutant strain. On this basis, an efficient by-product acetaldehyde elimination system was introduced into the catalytic system mediated by L-threonine transaldolase to construct an integrated system. Eliminate the inhibitory effect of by-products such as acetaldehyde on the reaction, improve the solubility of the substrate, and at the same time, the by-product elimination mediating enzyme can catalyze the auxiliary substrate to realize the in situ regeneration of the cofactor NADH. The integrated system significantly improves the catalytic efficiency and stereoselectivity of L-threonine transaldolase, realizes the efficient biosynthesis of βHAAs, and lays a solid foundation for its industrial production.
在本发明的一种实施方式中,所述突变体包含位点231、262、268、35、57位置的一个或者多个位置氨基酸取代,其中231位氨基酸替代为S,T,更优选的替代为S,262位氨基酸替代为N,S,更优选的替代为S,268位置优选的替代为S。35位氨基酸替换为S,T,A,更优选的替代为S,57位氨基酸替代为S、N,更优选的替代为N。所述突变体为以上位点更优选的替代的一种或多种组合,其中最优选的为N35S-V57N-C262S-N268S。In one embodiment of the present invention, the mutant contains one or more amino acid substitutions at
在本发明的一种实施方式中,所述L-苏氨酸转醛酶突变体的催化效率是以L-苏氨酸和对甲磺酰基苯甲醛为底物进行全细胞反应,经HPLC检测其产物峰面积衡量的。In one embodiment of the present invention, the catalytic efficiency of the L-threonine transaldolase mutant is to carry out a whole-cell reaction with L-threonine and p-methylsulfonylbenzaldehyde as substrates, and it is detected by HPLC Its product peak area is measured.
本发明提供了一种L-苏氨酸转醛酶突变体,所述突变体为,将氨基酸序列如SEQID NO.2所示的L-苏氨酸转醛酶的第57位的缬氨酸突变为天冬酰胺得到的,命名为V57N;The present invention provides a mutant of L-threonine transaldolase, wherein the mutant is the valine at the 57th position of L-threonine transaldolase shown in SEQID NO.2. Obtained by mutation to asparagine, named V57N;
或所述突变体为,将氨基酸序列如SEQ ID NO.2所示的L-苏氨酸转醛酶的第57位的缬氨酸突变为丝氨酸得到的,命名为V57S;Or the mutant is obtained by mutating the valine at the 57th position of L-threonine aldolase shown in SEQ ID NO.2 to serine, named V57S;
或所述突变体为,将氨基酸序列如SEQ ID NO.2所示的L-苏氨酸转醛酶的第57位的缬氨酸突变为天冬酰胺,第35位的天冬酰胺突变为丝氨酸,同时将第268位的天冬酰胺突变为丝氨酸得到的,命名为N35S-V57N-N268S;Or the mutant is that the valine at position 57 of the L-threonine transaldolase shown in SEQ ID NO.2 is mutated into asparagine, and the asparagine at
或所述突变体为,将氨基酸序列如SEQ ID NO.2所示的L-苏氨酸转醛酶的第57位的缬氨酸突变为天冬酰胺,第35位的天冬酰胺突变为丝氨酸,同时将第262位的半胱氨酸突变为丝氨酸得到的,命名为N35S-V57N-C262S;Or the mutant is that the valine at position 57 of the L-threonine transaldolase shown in SEQ ID NO.2 is mutated into asparagine, and the asparagine at
或所述突变体为,将氨基酸序列如SEQ ID NO.2所示的L-苏氨酸转醛酶的第57位的缬氨酸突变为天冬酰胺,第231位的天冬酰胺突变为丝氨酸,同时将第262位的半胱氨酸突变为丝氨酸得到的,命名为V57N-N231S-C262S;Or the mutant is that the valine at position 57 of the L-threonine transaldolase shown in SEQ ID NO.2 is mutated into asparagine, and the asparagine at position 231 is mutated into Serine, obtained by mutating cysteine at position 262 to serine at the same time, named V57N-N231S-C262S;
或所述突变体为,将氨基酸序列如SEQ ID NO.2所示的L-苏氨酸转醛酶的第57位的缬氨酸突变为天冬酰胺,第35位的天冬酰胺突变为丝氨酸,将第262位的半胱氨酸突变为丝氨酸,同时将第268位的天冬酰胺突变为丝氨酸得到的,命名为N35S-V57N-C262S-N268S。Or the mutant is that the valine at position 57 of the L-threonine transaldolase shown in SEQ ID NO.2 is mutated into asparagine, and the asparagine at
所述亲本酶L-苏氨酸转醛酶来源于Burkholderia diffusa。The parent enzyme L-threonine transaldolase is derived from Burkholderia diffusa.
在本发明的一种实施方式中,编码所述亲本酶L-苏氨酸转醛酶的核苷酸序列如SEQ ID NO.1所示。In one embodiment of the present invention, the nucleotide sequence encoding the parent enzyme L-threonine transaldolase is shown in SEQ ID NO.1.
本发明还提供了编码上述突变体的基因。The present invention also provides genes encoding the above mutants.
本发明还提供了一种携带所述突变体,或携带上述基因的重组载体。The present invention also provides a recombinant vector carrying the mutant or the above-mentioned gene.
在本发明的一种实施方式中,所述重组载体以pET28a、pRSF-Duet1、pET21a或pGEX-6P-1为表达载体。In one embodiment of the present invention, the recombinant vector uses pET28a, pRSF-Duet1, pET21a or pGEX-6P-1 as the expression vector.
本发明还提供了一种表达上述突变体,携带上述基因,或携带上述重组载体的重组细胞。The present invention also provides a recombinant cell expressing the above-mentioned mutant, carrying the above-mentioned gene, or carrying the above-mentioned recombinant vector.
在本发明的一种实施方式中,所述重组细胞以细菌或真菌为表达宿主。In one embodiment of the present invention, the recombinant cells use bacteria or fungi as expression hosts.
在本发明的一种实施方式中,所述重组细胞以大肠杆菌为表达宿主。In one embodiment of the present invention, the recombinant cells use Escherichia coli as the expression host.
本发明提供了一种L-苏氨酸转醛酶,编码所述L-苏氨酸转醛酶的核苷酸序列如SEQ ID NO.1所示。The invention provides an L-threonine transaldolase, the nucleotide sequence encoding the L-threonine transaldolase is shown in SEQ ID NO.1.
本发明提供了一种L-苏氨酸转醛酶,所述L-苏氨酸转醛酶氨基酸序列包括但不限于与SEQ ID NO.1所示序列同源性≥90%的氨基酸序列。The present invention provides an L-threonine transaldolase, the amino acid sequence of the L-threonine transaldolase includes, but not limited to, an amino acid sequence with ≥90% homology to the sequence shown in SEQ ID NO.1.
本发明提供所述L-苏氨酸转醛酶纯酶的酶学性质研究展示,研究纯酶的酶学性质对其后续的全细胞生物催化具有重要作用。The invention provides a research and demonstration of the enzymatic properties of the pure L-threonine transaldolase enzyme, and the study of the enzymatic properties of the pure enzyme plays an important role in its subsequent whole-cell biocatalysis.
在本发明的一种实施方式中,所述的L-苏氨酸转醛酶纯酶在pH 7.0~7.5,温度30~50℃具有较高的催化活性,其中金属离子Mg2+、Ca2+对L-苏氨酸转醛酶活性有促进作用。In one embodiment of the present invention, the pure L-threonine transaldolase enzyme has relatively high catalytic activity at pH 7.0-7.5 and temperature 30-50°C, wherein metal ions Mg 2+ , Ca 2 + Promote the activity of L-threonine transaldolase.
在本发明的一种实施方式中,所述的L-苏氨酸转醛酶活性的测定是以L-苏氨酸为供体底物,对甲磺酰基苯甲醛为受体底物,磷酸吡哆醛为辅酶,通过耦合乙醛脱氢酶监测340nm处NADH的下降。In one embodiment of the present invention, the assay of the L-threonine transaldolase activity uses L-threonine as a donor substrate, p-methylsulfonylbenzaldehyde as an acceptor substrate, and phosphoric acid Pyridoxal is a coenzyme, and the decrease of NADH at 340nm is monitored by coupling acetaldehyde dehydrogenase.
本发明还提供了携带L-苏氨酸转醛酶的重组载体。The invention also provides a recombinant vector carrying L-threonine transaldolase.
在本发明的一种实施方式中,所述重组载体以pET28a、pRSF-Duet1、pET21a或pGEX-6P-1为表达载体。In one embodiment of the present invention, the recombinant vector uses pET28a, pRSF-Duet1, pET21a or pGEX-6P-1 as the expression vector.
本发明还提供了表达上述L-苏氨酸转醛酶,或含有上述重组载体的重组细胞。The present invention also provides recombinant cells expressing the above-mentioned L-threonine transaldolase, or containing the above-mentioned recombinant vector.
在本发明的一种实施方式中,所述重组细胞以细菌或真菌为表达宿主。In one embodiment of the present invention, the recombinant cells use bacteria or fungi as expression hosts.
在本发明的一种实施方式中,所述重组细胞以大肠杆菌为表达宿主。In one embodiment of the present invention, the recombinant cells use Escherichia coli as the expression host.
本发明提供了一种重组大肠杆菌,所述大肠杆菌表达了上述突变体或上述L-苏氨酸转醛酶,同时表达了乙醇脱氢酶。The invention provides a recombinant Escherichia coli, which expresses the above-mentioned mutant or the above-mentioned L-threonine transaldolase, and simultaneously expresses alcohol dehydrogenase.
在本发明的一种实施方式中,所述乙醇脱氢酶来源于Komagataella kurtzmanii。In one embodiment of the present invention, the alcohol dehydrogenase is derived from Komagataella kurtzmanii.
在本发明的一种实施方式中,所述乙醇脱氢酶的氨基酸序列如SEQ ID NO.3所示,编码所述乙醇脱氢酶的核苷酸序列如SEQ ID NO.4所示。In one embodiment of the present invention, the amino acid sequence of the alcohol dehydrogenase is shown in SEQ ID NO.3, and the nucleotide sequence encoding the alcohol dehydrogenase is shown in SEQ ID NO.4.
本发明还提供了一种全细胞制备β-羟基-α-氨基酸的方法,所述方法为,以L-苏氨酸为供体底物,以苯甲醛及其衍生物为受体底物,采用上述重组细胞或上述重组大肠杆菌全细胞转化制备得到β-羟基-α-氨基酸,所述β-羟基-α-氨基酸为苯基丝氨酸及其衍生物。The present invention also provides a method for preparing β-hydroxyl-α-amino acids in whole cells. The method is as follows: L-threonine is used as a donor substrate, benzaldehyde and its derivatives are used as an acceptor substrate, The β-hydroxy-α-amino acid is prepared by transforming the above-mentioned recombinant cells or the whole cells of the above-mentioned recombinant Escherichia coli, and the β-hydroxy-α-amino acid is phenylserine and its derivatives.
在本发明的一种实施方式中,所述苯甲醛及其衍生物的结构通式为:In one embodiment of the present invention, the general structural formula of described benzaldehyde and derivatives thereof is:
所述R基团包括但不限于:氢基、烷基、烷氧基、烷基磺酰基、烷基亚磺酰基、烷基硫基、磺酸基、亚磺酸基、巯基、硝基和卤素;R基位置为邻、间或对位。The R groups include, but are not limited to: hydrogen, alkyl, alkoxy, alkylsulfonyl, alkylsulfinyl, alkylthio, sulfonic acid, sulfinic acid, mercapto, nitro and Halogen; R group position is ortho, meta or para.
在本发明的一种实施方式中,所述苯基丝氨酸及其衍生物的结构通式为:In one embodiment of the present invention, the general structural formula of the phenylserine and its derivatives is:
所述R基团包括但不限于:氢基、烷基、烷氧基、烷基磺酰基、烷基亚磺酰基、烷基硫基、磺酸基、亚磺酸基、巯基、硝基和卤素;R基位置为邻、间或对位。The R groups include, but are not limited to: hydrogen, alkyl, alkoxy, alkylsulfonyl, alkylsulfinyl, alkylthio, sulfonic acid, sulfinic acid, mercapto, nitro and Halogen; R group position is ortho, meta or para.
在本发明的一种实施方式中,所述全细胞为同时表达了乙醇脱氢酶的重组大肠杆菌时,底物要额外添加异丙醇;引入共催化底物异丙醇,其可以被乙醇脱氢酶消耗,提供反应所需的NADH,减少整个乙醛消除系统中的NADH用量;特别注意的是,共底物的引入,不仅可以提供NADH再生循环,其本身作为有机溶剂,对L-苏氨酸转醛酶全细胞催化合成β-羟基-α-氨基酸效率具有一定的提升。In one embodiment of the present invention, when the whole cell is a recombinant Escherichia coli expressing alcohol dehydrogenase at the same time, the substrate will additionally add isopropanol; Dehydrogenase consumes, provides NADH required for the reaction, and reduces the amount of NADH in the entire acetaldehyde elimination system; special attention is that the introduction of the co-substrate can not only provide NADH regeneration cycle, itself as an organic solvent, for L- Threonine transaldolase whole-cell catalyzed synthesis of β-hydroxy-α-amino acid efficiency has been improved to a certain extent.
在本发明的一种实施方式中,所述苯基丝氨酸衍生物的获得以L-苏氨酸为供体底物,以苯甲醛及其衍生物为受体底物,经L-苏氨酸转醛酶全细胞生物催化获得。In one embodiment of the present invention, the phenylserine derivatives are obtained using L-threonine as a donor substrate, benzaldehyde and its derivatives as an acceptor substrate, and through L-threonine Obtained by whole-cell biocatalysis of transaldolase.
所述反应通式如式1所示:The general reaction formula is as shown in formula 1:
在本发明的一种实施方式中,所述R基团包括但不限于:氢基、烷基、烷氧基、烷基磺酰基、烷基亚磺酰基、烷基硫基、磺酸基、亚磺酸基、巯基、硝基和卤素;R基位置为邻、间或对位。In one embodiment of the present invention, the R group includes, but is not limited to: hydrogen, alkyl, alkoxy, alkylsulfonyl, alkylsulfinyl, alkylthio, sulfonic acid, Sulfinic acid group, mercapto group, nitro group and halogen; R group position is ortho, meta or para.
在本发明的一种实施方式中,所述L-苏氨酸转醛酶的全细胞催化体系为,L-苏氨酸120mM,苯甲醛及其衍生物30mM,CaCl2 1mM,磷酸吡哆醛0.1mM,反应时间为8h,反应缓冲液50mM甲酸铵溶液(pH 7.0)。In one embodiment of the present invention, the whole-cell catalytic system of the L-threonine transaldolase is 120 mM of L-threonine, 30 mM of benzaldehyde and its derivatives, 1 mM of CaCl 2 , pyridoxal phosphate 0.1mM, the reaction time is 8h, and the reaction buffer is 50mM ammonium formate solution (pH 7.0).
在本发明的一种实施方式中,所述L-苏氨酸转醛酶全细胞催化体系是以L-苏氨酸与对甲磺酰基苯甲醛为底物,经外界条件优化得到。其中外界条件包括但不限于温度,L-苏氨酸转醛酶全细胞用量,底物配比(L-苏氨酸:对甲磺酰基苯甲醛)。In one embodiment of the present invention, the whole-cell catalytic system of L-threonine transaldolase is obtained by optimizing external conditions with L-threonine and p-methylsulfonylbenzaldehyde as substrates. The external conditions include but are not limited to temperature, the amount of L-threonine transaldolase used in whole cells, and the ratio of substrates (L-threonine: p-methylsulfonylbenzaldehyde).
在本发明的一种实施方式中,全细胞优化得到的最适条件为温度35℃,全细胞用量40mg mL-1,底物配比(L-苏氨酸:对甲磺酰基苯甲醛=4:1)。In one embodiment of the present invention, the optimal conditions obtained by optimization of whole cells are
本发明构建了高效的副产物乙醛消除系统,通过引入来自Komagataellakurtzmanii的乙醇脱氢酶(序列为SEQ ID NO.3所示)。同时引入共催化底物异丙醇,其可以被乙醇脱氢酶消耗,提供反应所需的NADH,减少整个乙醛消除系统中的NADH用量。特别注意的是,共底物的引入,不仅可以提供NADH再生循环,其本身作为有机溶剂,对L-苏氨酸转醛酶全细胞催化合成β-羟基-α-氨基酸效率具有一定的提升。The present invention constructs an efficient by-product acetaldehyde elimination system by introducing alcohol dehydrogenase (sequence shown in SEQ ID NO.3) from Komagataellakurtzmanii. At the same time, the co-catalytic substrate isopropanol is introduced, which can be consumed by alcohol dehydrogenase to provide NADH required for the reaction and reduce the amount of NADH in the entire acetaldehyde elimination system. It should be noted that the introduction of the co-substrate can not only provide the NADH regeneration cycle, but also act as an organic solvent to improve the efficiency of L-threonine transaldolase whole-cell catalyzed synthesis of β-hydroxy-α-amino acids.
在本发明的一种实施方式中,所述高效的副产物乙醛消除系统为,以L-苏氨酸为供体底物,以苯甲醛及其衍生物为受体底物,以异丙醇作为共底物,采用重组大肠杆菌全细胞催化制备得到β-羟基-α-氨基酸,所述β-羟基-α-氨基酸为苯基丝氨酸及其衍生物;In one embodiment of the present invention, the high-efficiency by-product acetaldehyde elimination system uses L-threonine as a donor substrate, benzaldehyde and its derivatives as an acceptor substrate, and isopropyl Alcohol is used as a co-substrate, and β-hydroxyl-α-amino acids are prepared by catalyzing whole cells of recombinant Escherichia coli, and the β-hydroxyl-α-amino acids are phenylserine and its derivatives;
所述重组大肠杆菌表达了上述突变体或上述L-苏氨酸转醛酶,同时表达了乙醇脱氢酶。The recombinant Escherichia coli expresses the above-mentioned mutant or the above-mentioned L-threonine transaldolase, and simultaneously expresses alcohol dehydrogenase.
在本发明的一种实施方式中,所述乙醇脱氢酶来源于Komagataella kurtzmanii。In one embodiment of the present invention, the alcohol dehydrogenase is derived from Komagataella kurtzmanii.
在本发明的一种实施方式中,所述乙醇脱氢酶的氨基酸序列如SEQ ID NO.3所示,编码所述乙醇脱氢酶的核苷酸序列如SEQ ID NO.4所示。In one embodiment of the present invention, the amino acid sequence of the alcohol dehydrogenase is shown in SEQ ID NO.3, and the nucleotide sequence encoding the alcohol dehydrogenase is shown in SEQ ID NO.4.
有益效果Beneficial effect
(1)本发明通过氨基酸序列和结构比对,挖掘到一种来源于Burkholderiadiffusa新型L-苏氨酸转醛酶,克隆到大肠杆菌中,实现高效异源表达并纯化,研究其酶学性质,优化全细胞催化合成βHAAs条件。同时通过同源建模,分子对接以及多重序列比对等手段对L-苏氨酸转醛酶进行关键氨基酸位点的突变,获得催化效率明显提升的突变体。在此基础上,本发明还引入高效副产物乙醛消除体系,和辅因子的原位循环,构建全细胞催化的整合系统,实现了βHAAs的高效制备,为其工业化生产奠定了坚实的研究基础。(1) Through amino acid sequence and structure comparison, the present invention excavated a novel L-threonine transaldolase derived from Burkholderiadiffusa, cloned it into Escherichia coli, realized efficient heterologous expression and purification, and studied its enzymatic properties, Optimizing conditions for whole-cell catalytic synthesis of βHAAs. At the same time, through homology modeling, molecular docking and multiple sequence alignment, the key amino acid sites of L-threonine transaldolase were mutated to obtain mutants with significantly improved catalytic efficiency. On this basis, the present invention also introduces an efficient by-product acetaldehyde elimination system and in-situ circulation of cofactors to construct an integrated system of whole-cell catalysis, realizes the efficient preparation of βHAAs, and lays a solid research foundation for its industrial production .
(2)本发明以廉价的L-苏氨酸及苯甲醛衍生物为底物,经过L-苏氨酸转醛酶一步催化,便可获得转化效率与立体选择性高的βHAAs。全细胞生物催化反应不需要繁琐的步骤,无多余的副产物生成,反应条件温和,对环境友好。本发明通过生物催化一步法获得目标产物,是一种绿色高效的生物合成βHAAs的方法。(2) The present invention uses cheap L-threonine and benzaldehyde derivatives as substrates and undergoes one-step catalysis by L-threonine transaldolase to obtain βHAAs with high conversion efficiency and stereoselectivity. The whole-cell biocatalytic reaction does not require cumbersome steps, no redundant by-products are generated, the reaction conditions are mild, and it is environmentally friendly. The invention obtains the target product through a one-step method of biocatalysis, and is a green and efficient method for biosynthesizing βHAAs.
附图说明Description of drawings
图1:纯化的L-苏氨酸转醛酶SDS-PAGE图;其中,Line 1为纯化后的的L-苏氨酸转醛酶纯酶条带。Figure 1: SDS-PAGE image of purified L-threonine transaldolase; among them,
图2:pH与温度对L-苏氨酸转醛酶的纯酶酶活性的影响;其中,图2A表示L-苏氨酸转醛酶在不同pH下的酶活稳定性;图2B表示L-苏氨酸转醛酶在不同pH下的酶活性;图2C表示L-苏氨酸转醛酶的温度稳定性;图2D表示L-苏氨酸转醛酶在不同温度下的酶活性。Fig. 2: The influence of pH and temperature on the pure enzymatic activity of L-threonine transaldolase; Wherein, Fig. 2A represents the enzyme activity stability of L-threonine transaldolase at different pH; Fig. 2B represents L - Enzyme activity of threonine transaldolase at different pH; FIG. 2C shows temperature stability of L-threonine transaldolase; FIG. 2D shows enzymatic activity of L-threonine transaldolase at different temperatures.
图3:金属离子添加对L-苏氨酸转醛酶纯酶酶活性的影响。Figure 3: Effect of metal ion addition on the enzymatic activity of L-threonine transaldolase pure enzyme.
图4:L-苏氨酸转醛酶全细胞催化合成L-threo-对甲磺酰基苯丝氨酸液相检测图。Figure 4: The liquid phase detection diagram of the synthesis of L-threo-p-methylsulfonylphenylserine catalyzed by L-threonine transaldolase in whole cells.
图5:L-苏氨酸合成对甲磺酰基苯丝氨酸全细胞生物催化条件的优化;其中,图5A表示温度对L-苏氨酸转醛酶全细胞催化的影响;图5B表示全细胞浓度对L-苏氨酸转醛酶全细胞催化的影响;图5C表示底物配比对L-苏氨酸转醛酶全细胞催化的影响。Figure 5: Optimization of biocatalytic conditions for whole-cell biocatalysis of methylsulfonylphenylserine for synthesis of L-threonine; among them, Figure 5A shows the effect of temperature on whole-cell catalysis of L-threonine transaldolase; Figure 5B shows the concentration of whole cells Effects on whole-cell catalysis of L-threonine transaldolase; Figure 5C shows the effect of substrate ratio on whole-cell catalysis of L-threonine transaldolase.
图6:L-苏氨酸转醛酶的同源建模结构及分子对接结构展示。Figure 6: The homology modeling structure and molecular docking structure display of L-threonine transaldolase.
图7:L-苏氨酸转醛酶的多重序列比对。Figure 7: Multiple sequence alignment of L-threonine transaldolases.
图8:合成βHAAs的受体底物芳香醛结构式展示。Figure 8: Display of the structural formula of the acceptor substrate aromatic aldehyde for the synthesis of βHAAs.
图9:L-苏氨酸转醛酶与乙醛消除系统耦连全细胞催化的效果对比。Figure 9: Comparison of the effect of L-threonine transaldolase coupled with the acetaldehyde elimination system in whole-cell catalysis.
图10:乙醛消除系统反应示意图。Figure 10: Schematic diagram of the reaction of the acetaldehyde elimination system.
具体实施方式Detailed ways
下述实施例中所涉及的检测方法如下:The detection methods involved in the following examples are as follows:
产物L-threo-对甲磺酰基苯丝氨酸的液相检测方法:The liquid phase detection method of the product L-threo-p-methylsulfonylphenylserine:
采用邻苯二甲醛(OPA)/N-乙酰-L半胱氨酸(NAC)衍生法,分别称取20mg的OPA与NAC,溶解于4mL硼酸缓冲液(0.2M,pH 9.8)与1mL纯乙腈中配成衍生剂,所得全细胞催化样品处理后与衍生剂1:4的方式混匀,适当稀释后进行液相检测,流动相:50mM的磷酸二氢钾缓冲液(pH 8.0):纯乙腈=83:17。检测条件为:流速1mL min-1,柱温40℃,检测波长为338nm。由图4所示,L-threo-对甲磺酰基苯丝氨酸出峰时间为4.5min,L-erythro-对甲磺酰基苯丝氨酸出峰时间为5.2min。其中L-threo-对甲磺酰基苯丝氨酸非对映体选择性(de值)计算公式为:de=(L-threo-对甲磺酰基苯丝氨酸峰面积+L-erythro-对甲磺酰基苯丝氨酸)/(L-threo-对甲磺酰基苯丝氨酸峰面积-L-erythro-对甲磺酰基苯丝氨酸)×100%。Using o-phthalaldehyde (OPA)/N-acetyl-L-cysteine (NAC) derivatization method, weigh 20mg of OPA and NAC respectively, dissolve in 4mL boric acid buffer (0.2M, pH 9.8) and 1mL pure acetonitrile The derivatizer is formulated in the medium, the whole cell catalytic sample is processed and mixed with the derivatizer in a 1:4 manner, and then diluted appropriately for liquid phase detection, mobile phase: 50mM potassium dihydrogen phosphate buffer (pH 8.0): pure acetonitrile =83:17. The detection conditions are: flow rate 1mL min -1 ,
下述实施例中所涉及的引物序列如下:The primer sequences involved in the following examples are as follows:
表1:L-苏氨酸转醛酶单点突变所需引物Table 1: Primers required for single point mutation of L-threonine transaldolase
实施例1:L-苏氨酸转醛酶基因的获得及表达纯化Example 1: Obtaining and expression purification of L-threonine transaldolase gene
具体步骤如下:Specific steps are as follows:
(1)从NCBI中获取来自Burkholderia diffusa的L-苏氨酸转醛酶BuLTTA的氨基酸序列(NCBI数据库基因登陆号为WP_059467200.1,氨基酸序列如SEQ ID NO.2所示),根据大肠杆菌的密码子偏好性,对基因进行密码子优化(核苷酸序列如SEQ ID NO.1所示),委托生物公司化学合成,将优化后的序列构建至载体pGEX-6p-1上,进一步转化至E.coli BL21(DE3)感受态细胞中,获得重组菌E.coli/pGEX-BuLTTA。(1) Obtain the amino acid sequence of the L-threonine transaldolase BuLTTA from Burkholderia diffusa from NCBI (the NCBI database gene accession number is WP_059467200.1, and the amino acid sequence is shown in SEQ ID NO.2), according to Escherichia coli Codon preference, optimize the codon of the gene (the nucleotide sequence is shown in SEQ ID NO.1), entrust the biological company to chemically synthesize, construct the optimized sequence on the vector pGEX-6p-1, and further transform it into The recombinant strain E.coli/pGEX-BuLTTA was obtained from E.coli BL21(DE3) competent cells.
(2)蛋白表达诱导条件为:0.2mM IPTG,25℃下培养14~16h,获得的L-苏氨酸转醛酶全细胞按照说明书通过GSH Purose 4Fast Flow柱子(购自千纯生物公司)纯化及GST标签的酶切获得单一条带的蛋白。所述菌株的构建,诱导表达以及纯化均为常规操作;纯化的蛋白如图1所示。(2) The protein expression induction condition is: 0.2mM IPTG, cultured at 25°C for 14-16 hours, and the obtained whole cells of L-threonine transaldolase were purified by
结果显示,SDS-PAGE显示单一条带,分子量大约为48kDa,与重组蛋白的理论分子量48.6kDa相吻合。The results showed that SDS-PAGE showed a single band with a molecular weight of about 48kDa, which was consistent with the theoretical molecular weight of the recombinant protein of 48.6kDa.
实施例2:L-苏氨酸转醛酶纯酶的酶学性质研究。Example 2: Study on enzymatic properties of pure L-threonine transaldolase enzyme.
具体步骤如下:Specific steps are as follows:
(1)L-苏氨酸转醛酶酶活性的测定:LTTAs的酶活性通过NADH与ADH耦合试验测定。在25℃下,使用多功能酶标仪(BioTek,Vermont,USA)监测340nm(ε=6220M-1cm-1)处吸光度的下降速率。反应体系为10mM对甲基磺酰苯甲醛、100mM L-苏氨酸、50μM PLP、0.2mM NADH和10U ADH组成的反应混合物(190μL),加入Tris-HCl缓冲液(20mM Tris-HCl,pH 7.0,10%二甲基亚砜(DMSO),在25℃下孵育1分钟。引入15μg LTTAs酶(在10μL Tris-HCl缓冲液中),在340nm处监测1.5min。转醛酶活性的一个单位(U)定义为每分钟催化生成1μmol的L-threo-对甲基磺基苯基丝氨酸转化的酶量,所有实验重复三次;在此基础上,以L-苏氨酸和对甲基磺酰苯甲醛为底物来测定LTTAs的酶活性。(1) Determination of the enzymatic activity of L-threonine transaldolase: the enzymatic activity of LTTAs was determined by NADH and ADH coupling assay. At 25°C, the rate of decrease in absorbance at 340 nm (ε=6220M −1 cm −1 ) was monitored using a multi-functional microplate reader (BioTek, Vermont, USA). The reaction system was a reaction mixture (190 μL) consisting of 10 mM p-methylsulfonylbenzaldehyde, 100 mM L-threonine, 50 μM PLP, 0.2 mM NADH and 10 U ADH, and Tris-HCl buffer (20 mM Tris-HCl, pH 7.0 , 10% dimethyl sulfoxide (DMSO), incubated at 25°C for 1 minute. Introduce 15 μg LTTAs enzyme (in 10 μL Tris-HCl buffer), and monitor at 340 nm for 1.5 min. One unit of transaldolase activity ( U) is defined as the amount of enzyme that catalyzes the conversion of 1 μmol of L-threo-p-methylsulfonylserine per minute, and all experiments were repeated three times; on this basis, L-threoline and p-methylsulfonylserine Formaldehyde was used as a substrate to measure the enzymatic activity of LTTAs.
(2)使用磷酸盐(pH 6.0-8.0)、Tris-HCl(pH 8.0-9.0)和碳酸盐-碳酸氢盐(pH9.0-10.0)作为缓冲试剂。测定不同pH值(pH 6.0-10.0)和温度(10-80℃)下LTTAs的pH和温度依赖性。(2) Use phosphate (pH 6.0-8.0), Tris-HCl (pH 8.0-9.0) and carbonate-bicarbonate (pH 9.0-10.0) as buffer reagents. The pH and temperature dependence of LTTAs at different pH values (pH 6.0-10.0) and temperatures (10-80 °C) were determined.
(3)为了研究pH的稳定性,酶溶液在各种pH缓冲液中孵育12小时,在4℃下,在30℃下测定残留活性。(3) In order to study the stability of pH, the enzyme solution was incubated in various pH buffers for 12 hours at 4°C, and the residual activity was determined at 30°C.
为了评估热稳定性,酶溶液在20mM Tris缓冲液(pH 7.0)中在不同温度(10-80℃)下孵育1h,冷却后在30℃下测定剩余的酶活性。To assess thermostability, enzyme solutions were incubated in 20 mM Tris buffer (pH 7.0) at different temperatures (10-80°C) for 1 h, and the remaining enzyme activity was determined at 30°C after cooling.
同时在终浓度为1mM和5mM的不同金属离子存在下,研究金属离子对L-苏氨酸转醛酶活性的影响。在没有金属离子的情况下测定的L-苏氨酸转醛酶活性作对照。At the same time, in the presence of different metal ions with the final concentration of 1mM and 5mM, the effect of metal ions on the activity of L-threonine transaldolase was studied. The L-threonine transaldolase activity measured in the absence of metal ions was used as a control.
结果如图2所示,图2A、2B显示,研究表明L-苏氨酸转醛酶在温度10~60℃时,具有稳定的酶活性,最适反应温度为50℃;pH值为7.0~7.5时,具有稳定且高的活性(图2C、2D);同时由图3所示,Ca2+与Mg2+的添加对L-苏氨酸转醛酶酶活有明显的促进作用,特别是当添加1mM的Ca2+或Mg2+,其酶活性分别是对照的1.51倍和1.26倍。The results are shown in Figure 2, Figures 2A and 2B show that studies have shown that L-threonine transaldolase has stable enzyme activity at a temperature of 10-60°C, and the optimum reaction temperature is 50°C; the pH value is 7.0-60°C. 7.5, it has stable and high activity (Figure 2C, 2D); at the same time, as shown in Figure 3, the addition of Ca 2+ and Mg 2+ can significantly promote the activity of L-threonine aldolase, especially When 1mM Ca 2+ or Mg 2+ was added, the enzyme activity was 1.51 times and 1.26 times that of the control, respectively.
实施例3:L-苏氨酸转醛酶全细胞合成L-threo-对甲磺酰基苯丝氨酸的条件优化Example 3: Optimization of conditions for whole-cell synthesis of L-threo-p-methylsulfonylphenylserine by L-threonine transaldolase
具体步骤如下:Specific steps are as follows:
(1)L-苏氨酸转醛酶全细胞合成L-threo-对甲磺酰基苯丝氨酸的初始反应条件为:反应体系为1mL,包含30mM对甲基磺酰苯甲醛,100mM L-苏氨酸,50μM PLP,1mM CaCl2和30mg mL-1湿细胞(实施例1制备得到的E.coli/pGEX-BuLTTA),添加10%的DMSO作为助溶剂。反应缓冲液为50mM甲酸铵(pH 7.0)。反应在摇床中进行,转速200rpm,温度30℃,反应时间5h,反应结束后高速离心去掉全细胞,得到上清液。(1) The initial reaction conditions for whole-cell synthesis of L-threo-p-methylsulfonylphenylserine by L-threonine transaldolase are: the reaction system is 1mL, containing 30mM p-methylsulfonylbenzaldehyde, 100mM L-threoline acid, 50 μM PLP, 1 mM CaCl 2 and 30 mg mL −1 wet cells (E.coli/pGEX-BuLTTA prepared in Example 1), and 10% DMSO was added as a cosolvent. The reaction buffer was 50 mM ammonium formate (pH 7.0). The reaction was carried out in a shaker with a rotation speed of 200 rpm, a temperature of 30° C., and a reaction time of 5 hours. After the reaction was completed, the whole cells were removed by high-speed centrifugation to obtain a supernatant.
用改进的OPA/NAC衍生法对反应样品进行分析。将20mg NAC和20mg OPA溶于5mL衍生化缓冲液(4mL,0.2M硼酸,1mL乙腈,pH 9.8)中,得到OPA/NAC试剂。色谱分析使用Agilent-1260HPLC系统(Agilent Technologies Inc.,Palo Alto,USA),紫外检测波长为338nm。采用自动进样程序对样品进行柱前衍生化。色谱柱:Hypersil ODS-2反相色谱柱(250×4.6mm 2.5μm),流动相:50mm KH2PO4,pH8.0乙腈(83/17),流速:1ml min-1,温度:40℃。结果如图5所示,其中L-threo-对甲磺酰基苯丝氨酸出峰时间为4.547min,L-erythro-对甲磺酰基苯丝氨酸出峰时间为5.225min。Reaction samples were analyzed by a modified OPA/NAC derivatization method. 20 mg NAC and 20 mg OPA were dissolved in 5 mL of derivatization buffer (4 mL, 0.2M boric acid, 1 mL acetonitrile, pH 9.8) to give OPA/NAC reagent. Agilent-1260HPLC system (Agilent Technologies Inc., Palo Alto, USA) was used for chromatographic analysis, and the ultraviolet detection wavelength was 338nm. Samples were pre-column derivatized using an autosampler program. Chromatographic column: Hypersil ODS-2 reverse phase chromatography column (250×4.6mm 2.5μm), mobile phase: 50mm KH 2 PO 4 , pH8.0 acetonitrile (83/17), flow rate: 1ml min -1 , temperature: 40℃ . The results are shown in Figure 5, wherein the peak eluting time of L-threo-p-methylsulfonylphenylserine is 4.547min, and that of L-erythro-p-methylsulfonylphenylserine is 5.225min.
(2)优化了L-苏氨酸全细胞催化反应的温度(2) Optimized the temperature of L-threonine whole-cell catalytic reaction
反应体系:反应体系为1mL,包含30mM对甲基磺酰苯甲醛,100mM L-苏氨酸,50μMPLP,1mM CaCl2和30mg mL-1湿细胞(实施例1制备得到的E.coli/pGEX-BuLTTA),添加10%的DMSO作为助溶剂。反应缓冲液为50mM甲酸铵(pH 7.0)。反应在摇床中进行,转速200rpm,温度设置为10-40℃,间隔为5℃,反应时间5h,反应结束后高速离心去掉全细胞,上清适当稀释后进行液相上样检测,所有实验均重复三次取平均值。Reaction system: The reaction system is 1 mL, containing 30 mM p-methylsulfonylbenzaldehyde, 100 mM L-threonine, 50 μMPLP, 1 mM CaCl 2 and 30 mg mL -1 wet cells (E.coli/pGEX- BuLTTA) with 10% DMSO added as a co-solvent. The reaction buffer was 50 mM ammonium formate (pH 7.0). The reaction was carried out in a shaker with a rotation speed of 200rpm, the temperature was set at 10-40°C, the interval was 5°C, and the reaction time was 5h. After the reaction was completed, the whole cells were removed by high-speed centrifugation, and the supernatant was properly diluted for liquid phase detection. All experiments All were repeated three times to obtain the average value.
结果显示:由图5A所示,温度的提升对L-苏氨酸转醛酶全细胞催化对甲磺酰基苯甲醛的转化率有促进作用,但是随着温度的上升,产物的de值呈现下降趋势,为了平衡产物产量与de值的问题,选取35℃为最适反应温度,此时底物转化率为55.1%,目标产物de值为80.2%。The results show that: as shown in Figure 5A, the increase of temperature can promote the conversion rate of methanesulfonylbenzaldehyde catalyzed by L-threonine transaldolase in whole cells, but with the increase of temperature, the de value of the product decreases Trend, in order to balance the problem of product yield and de value, choose 35 ℃ as the optimum reaction temperature, at this time, the substrate conversion rate is 55.1%, and the de value of the target product is 80.2%.
(3)优化了反应的全细胞浓度(3) Optimized the whole cell concentration of the reaction
反应体系:反应体系为1mL,包含30mM对甲基磺酰苯甲醛,100mM L-苏氨酸,50μMPLP,1mM CaCl2和10-60mg mL-1湿细胞(实施例1制备得到的E.coli/pGEX-BuLTTA),添加10%的DMSO作为助溶剂。反应缓冲液为50mM甲酸铵(pH 7.0)。反应在摇床中进行,转速200rpm,温度设置为35℃,反应时间5h,反应结束后高速离心去掉全细胞,上清适当稀释后进行液相上样检测,所有实验均重复三次取平均值。Reaction system: The reaction system is 1 mL, containing 30 mM p-methylsulfonylbenzaldehyde, 100 mM L-threonine, 50 μMPLP, 1 mM CaCl 2 and 10-60 mg mL -1 wet cells (E.coli/ pGEX-BuLTTA), with the addition of 10% DMSO as a co-solvent. The reaction buffer was 50 mM ammonium formate (pH 7.0). The reaction was carried out in a shaker with a rotation speed of 200 rpm, a temperature of 35°C, and a reaction time of 5 hours. After the reaction was completed, the whole cells were removed by high-speed centrifugation, and the supernatant was properly diluted for liquid phase loading. All experiments were repeated three times to obtain the average value.
结果显示:由图5B所示,湿细胞浓度在一定范围内与底物转化率与产物de值呈现正相关,当湿细胞浓度大于40mg mL-1,转化率与de值开始缓慢上升,说明此时全细胞所含酶量已达到最大酶量,因此选取40mg mL-1作为L-苏氨酸转醛酶全细胞反应的最适用量,此时底物转化率为63.5%,目标产物de值为83.2%。The results show: As shown in Figure 5B, the wet cell concentration is positively correlated with the conversion rate of the substrate and the de value of the product within a certain range. When the wet cell concentration is greater than 40 mg mL -1 , the conversion rate and de value begin to rise slowly, indicating that this At this time, the amount of enzyme contained in the whole cell has reached the maximum amount of enzyme, so 40mg mL -1 is selected as the most suitable amount for the whole cell reaction of L-threonine transaldolase. At this time, the conversion rate of the substrate is 63.5%, and the de value of the target product is was 83.2%.
(4)优化了反应的底物配比(4) Optimized the substrate ratio of the reaction
反应体系:反应体系为1mL,包含30mM对甲基磺酰苯甲醛,30-210mM L-苏氨酸,50μM PLP,1mM CaCl2和40mg mL-1湿细胞(实施例1制备得到的E.coli/pGEX-BuLTTA),添加10%的DMSO作为助溶剂。反应缓冲液为50mM甲酸铵(pH 7.0)。反应在摇床中进行,转速200rpm,温度设置为35℃,反应时间5h,反应结束后高速离心去掉全细胞,上清与衍生剂混合后适当稀释进行上样检测,所有实验均重复三次取平均值。结果显示:Reaction system: The reaction system is 1 mL, containing 30 mM p-methylsulfonylbenzaldehyde, 30-210 mM L-threonine, 50 μM PLP, 1 mM CaCl 2 and 40 mg mL -1 wet cells (E.coli prepared in Example 1 /pGEX-BuLTTA), adding 10% DMSO as a co-solvent. The reaction buffer was 50 mM ammonium formate (pH 7.0). The reaction was carried out in a shaker with a rotation speed of 200rpm, a temperature of 35°C, and a reaction time of 5 hours. After the reaction was completed, the whole cells were removed by high-speed centrifugation. After the supernatant was mixed with the derivative agent, it was properly diluted for loading and testing. All experiments were repeated three times to obtain the average value. The results show that:
如图5C所示,当L-苏氨酸与对甲磺酰基苯甲醛的比例大于4:1时,转化率与de值保持稳定,因此确定底物最适配比为L-苏氨酸:对甲磺酰基苯甲醛为4:1,此时底物转化率达到70.1%,目标产物de值达到86.3%。As shown in Figure 5C, when the ratio of L-threonine to p-methylsulfonylbenzaldehyde is greater than 4:1, the conversion rate and de value remain stable, so it is determined that the most suitable ratio of the substrate is L-threonine: The ratio of p-methylsulfonylbenzaldehyde is 4:1. At this time, the conversion rate of the substrate reaches 70.1%, and the de value of the target product reaches 86.3%.
实施例4:L-苏氨酸转醛酶的理性改造Embodiment 4: Rational modification of L-threonine transaldolase
具体步骤如下:Specific steps are as follows:
(1)本发明以Burkholderia diffusa来源的L-苏氨酸转醛酶为野生型酶(图6~7),确定14个突变位点。具体步骤为:(1) The present invention uses L-threonine transaldolase derived from Burkholderia diffusa as the wild-type enzyme (Figures 6-7), and determines 14 mutation sites. The specific steps are:
设计单点突变引物(表1),以野生型转醛酶序列(氨基酸序列如SEQ ID NO.2所示)为模板进行全质粒PCR,对获得的PCR产物进行模板消化以及产物纯化,随后转化至克隆宿主E.coli JM109感受态中,挑取克隆子进行测序验证,以对甲磺酰基苯甲醛与L-苏氨酸为底物,对测序正确的突变株进行进一步的全细胞转化。Design single-point mutation primers (Table 1), use the wild-type transaldolase sequence (amino acid sequence as shown in SEQ ID NO.2) as a template for full-plasmid PCR, and perform template digestion and product purification on the obtained PCR products, followed by transformation In the competent cloning host E.coli JM109, clones were picked for sequencing verification, and p-methylsulfonylbenzaldehyde and L-threonine were used as substrates to carry out further whole-cell transformation of the correctly sequenced mutant strains.
(2)反应条件:反应体系为1mL,包含30mM对甲基磺酰苯甲醛,120mM L-苏氨酸,50μM PLP,1mM CaCl2和40mg mL-1湿细胞(按照实施例1制备得到突变体E.coli/pGEX-BuLTTA-M6的全细胞,添加10%的DMSO作为助溶剂。反应缓冲液为50mM甲酸铵(pH 7.0)。反应在摇床中进行,转速200rpm,温度设置为35℃,反应时间5h。结果如表2所示。(2) Reaction conditions: the reaction system was 1 mL, containing 30 mM p-methylsulfonylbenzaldehyde, 120 mM L-threonine, 50 μM PLP, 1 mM CaCl 2 and 40 mg mL wet cells (the mutant was prepared according to Example 1 The whole cell of E.coli/pGEX-BuLTTA-M6, add 10% DMSO as cosolvent.Reaction buffer is 50mM ammonium formate (pH 7.0).Reaction is carried out in shaker, rotating speed 200rpm, temperature is set to 35 ℃, The reaction time is 5h. The results are shown in Table 2.
表2:野生型酶及突变酶催化转化L-threo-对甲磺酰基苯丝氨酸效率比较Table 2: Comparison of conversion efficiency of wild-type enzyme and mutant enzyme to L-threo-p-methylsulfonylphenylserine
结果显示,通过液相检测目标产物的含量与de值,最终获得5个位点突变催化转化产物效率明显提高的突变体:位点231、262、268、35、57的氨基酸定向突变;其中突变体N231S,C262S,N268S,N35S,C57N效果最好其全细胞催化L-threo-对甲磺酰基苯丝氨酸的转化率达到75.6~80.2%,目标产物de值达到88.2~91.1%。The results showed that by detecting the content and de value of the target product by liquid phase, 5 mutants with significantly improved catalytic conversion product efficiency were finally obtained: amino acid-directed mutations at
(3)对获得的单点突变进行组合突变,并测试其全细胞转化效果;引物序列如表1所示,构建方法为:以某个单点突变的氨基酸序列为模板,通过设计另外突变位点的全质粒PCR引物,通过模板消化、产物纯化、转化以及挑取克隆子测序验证得到突变正确的双突变质粒。再以此质粒为模板,进行下一个突变位点的构建,以此获得三突变以及四突变基因。按照步骤(2)的方法进行催化反应,结果如表3所示。(3) Perform combined mutations on the obtained single point mutations, and test their whole-cell transformation effects; the primer sequences are shown in Table 1, and the construction method is: use the amino acid sequence of a single point mutation as a template, and design another mutation site The PCR primers of the whole plasmid were selected, and the double mutant plasmid with the correct mutation was obtained through template digestion, product purification, transformation and sequencing of selected clones. Then use the plasmid as a template to construct the next mutation site, so as to obtain three mutations and four mutation genes. The catalytic reaction was carried out according to the method of step (2), and the results are shown in Table 3.
表3:有益突变位点组合突变催化L-threo-对甲磺酰基苯丝氨酸的转化效率Table 3: Conversion efficiency of L-threo-p-methylsulfonylphenylserine catalyzed by beneficial mutation site combination mutations
结果显示,表3为获得的正向组合突变体,这些突变位点的叠加获得了效果加倍的多重突变体,其中突变体N35S-V57N-C262S-N268S(命名为M6)全细胞催化合成L-threo-对甲磺酰基苯丝氨酸的转化率达到了97.6%,de值达到96.8%。The results show that Table 3 shows the obtained forward combination mutants. The superposition of these mutation sites has obtained multiple mutants with doubled effects, wherein the mutant N35S-V57N-C262S-N268S (named M6) whole-cell catalyzes the synthesis of L- The conversion rate of threo-p-methylsulfonylphenylserine reached 97.6%, and the de value reached 96.8%.
实施例5:L-苏氨酸转醛酶突变体M6全细胞催化合成βHAAsExample 5: Whole-cell catalyzed synthesis of βHAAs by L-threonine transaldolase mutant M6
以L-苏氨酸转醛酶突变体M6全细胞作为催化剂,合成了不同的βHAAs,如图8所示为不同的受体底物芳香醛,主要为苯环上不同位置不同的基团(将其命名为1a~18a)。其中各种βHAAs检测方法采用实施例3所述液相检测方法。Using whole cells of L-threonine transaldolase mutant M6 as a catalyst, different βHAAs were synthesized. As shown in Figure 8, they are different acceptor substrates, aromatic aldehydes, mainly groups with different positions on the benzene ring ( They are named 1a-18a). The various βHAAs detection methods adopt the liquid phase detection method described in Example 3.
反应体系为1mL,包含30mM的1a-18a,120mM L-苏氨酸,50μM PLP,1mM CaCl2和40mg mL-1湿细胞(按照实施例1方法制备得到的E.coli/pGEX-BuLTTA-M6),添加10%的DMSO作为助溶剂。反应缓冲液为50mM甲酸铵(pH 7.0)。反应在摇床中进行,转速200rpm,温度设置为35℃,反应时间5h,反应结束后高速离心去掉全细胞,上清适当稀释后按照实施例3方法进行上样检测,结果如表4所示。The reaction system was 1 mL, containing 30 mM 1a-18a, 120 mM L-threonine, 50 μM PLP, 1 mM CaCl 2 and 40 mg mL -1 wet cells (E.coli/pGEX-BuLTTA-M6 prepared according to the method in Example 1 ), adding 10% DMSO as co-solvent. The reaction buffer was 50 mM ammonium formate (pH 7.0). The reaction was carried out in a shaker with a rotation speed of 200 rpm, a temperature of 35°C, and a reaction time of 5 hours. After the reaction was completed, the whole cells were removed by high-speed centrifugation. After the supernatant was properly diluted, the sample was loaded and tested according to the method of Example 3. The results are shown in Table 4. .
表4:L-苏氨酸转醛酶突变体M6对不同受体底物的全细胞转化效果Table 4: Whole-cell transformation effect of L-threonine transaldolase mutant M6 on different receptor substrates
结果显示,如表4所示,对于选取的18个芳香醛中的大部分醛类,L-苏氨酸转醛酶突变体M6都能以较高的转化率(90.1~98.2%)与立体选择性(90.1~96.7%)合成目标产物。The results show that, as shown in Table 4, for most of the aldehydes in the selected 18 aromatic aldehydes, the L-threonine aldolase mutant M6 can achieve a higher conversion rate (90.1-98.2%) with stereo The target product was synthesized selectively (90.1~96.7%).
通过观察发现,L-苏氨酸转醛酶只能催化苯环上带有吸电子基团的芳香醛,如硝基,磺酰基,氯基,氟基等,对于苯环上带有供电子基团的芳香醛,则不能被利用。特别说明的是,本发明测定的芳香醛底物包括1a-18a但不限于此,凡是本发明中L-苏氨酸转醛酶及其突变体能催化的所有芳香环底物,都应包含在内。It was found through observation that L-threonine transaldolase can only catalyze aromatic aldehydes with electron-withdrawing groups on the benzene ring, such as nitro, sulfonyl, chlorine, fluorine, etc. Groups of aromatic aldehydes cannot be utilized. In particular, the aromatic aldehyde substrates measured in the present invention include 1a-18a but are not limited thereto. All aromatic ring substrates that can be catalyzed by L-threonine transaldolase and its mutants in the present invention should be included in Inside.
实施例6:副产物乙醛消除系统的构建及全细胞转化验证Example 6: Construction of by-product acetaldehyde elimination system and verification of whole cell transformation
L-苏氨酸转醛酶以L-苏氨酸和各类芳香醛为底物,以优异的立体选择性高效合成βHAAs。在反应的产物中,除了含有目标产物的异构体,还有等量的一分子乙醛生成。而乙醛的积累可能对L-苏氨酸转醛酶的全细胞转化产生影响,比如产物抑制现象的出现会造成底物利用率下降。因此有必要针对副产物开展进一步的消除。L-threonine transaldolase uses L-threonine and various aromatic aldehydes as substrates to efficiently synthesize βHAAs with excellent stereoselectivity. In the reaction product, in addition to containing the isomer of the target product, there is also an equal amount of a molecule of acetaldehyde generated. The accumulation of acetaldehyde may affect the whole-cell conversion of L-threonine aldolase, for example, the occurrence of product inhibition will cause the substrate utilization rate to decrease. Therefore, further elimination of by-products is necessary.
本发明创建了新型的乙醛消除系统,乙醛消除系统如图10所示,利用乙醛脱氢酶的氧化还原性,不仅可以利用乙醛,同时也可以消耗部分醇类化合物。基于此,本发明筛选了来自Komagataella kurtzmanii的乙醇脱氢酶(NCBI序列号为KAI0462988.1)。同时引入共催化底物异丙醇,其可以被乙醇脱氢酶消耗,同时将NAD+转化为NADH,提供NADH的再生,减少整个乙醛消除系统中的NADH用量。特别强调的是,该副产物消除系统,不仅具备消除副产物乙醛的功能,同时实现辅因子的原位循环。The present invention creates a novel acetaldehyde elimination system. The acetaldehyde elimination system is shown in FIG. 10 . Using the redox property of acetaldehyde dehydrogenase, not only acetaldehyde can be utilized, but also some alcohol compounds can be consumed. Based on this, the present invention screened the alcohol dehydrogenase (NCBI sequence number is KAI0462988.1) from Komagataella kurtzmanii. At the same time, the co-catalytic substrate isopropanol is introduced, which can be consumed by alcohol dehydrogenase, and at the same time convert NAD + to NADH, providing regeneration of NADH and reducing the amount of NADH in the entire acetaldehyde elimination system. It is particularly emphasized that the by-product elimination system not only has the function of eliminating the by-product acetaldehyde, but also realizes the in-situ circulation of cofactors.
具体步骤如下:Specific steps are as follows:
(1)重组大肠杆菌的构建:所述乙醇脱氢酶氨基酸序列经过密码子优化后由生物公司化学合成并构建至载体pET28a上,获得重组载体pET-KkADH,将重组载体pET-KkADH与转醛酶pGEX-BuLTTA同时转化至大肠杆菌BL21感受态中,孵育后的转化液涂布氨苄与卡那抗生素平板,获得带有双酶的共转化重组大肠杆菌:E.coli/pET-KkADH-pGEX-BuLTTA,其诱导条件为25℃,0.4mM IPTG的添加,在此条件下,可获得可溶性表达较好的重组蛋白。(1) Construction of recombinant Escherichia coli: the amino acid sequence of the alcohol dehydrogenase was chemically synthesized by a biological company after codon optimization and constructed on the vector pET28a to obtain the recombinant vector pET-KkADH, and the recombinant vector pET-KkADH was combined with transaldehyde The enzyme pGEX-BuLTTA was transformed into E. coli BL21 competent at the same time, and the transformed solution after incubation was coated with ampicillin and kana antibiotic plate to obtain a co-transformed recombinant E. coli with double enzymes: E.coli/pET-KkADH-pGEX- The induction condition of BuLTTA is 25°C, with the addition of 0.4mM IPTG. Under this condition, a well-expressed soluble recombinant protein can be obtained.
(2)本实施实例首先以野生型BuLTTA测试与乙醛消除系统耦连的效果。反应体系:反应体系为1mL,30mM对甲基磺酰苯甲醛,120mM L-苏氨酸,50μM PLP,1mM CaCl2和40mg mL-1湿细胞(重组pET-KkADH与pGEX-BuLTTA共转化重组大肠杆菌:E.coli/pET-KkADH-pGEX-BuLTTA),10%的DMSO,10%的异丙醇以及1mM的NADH;反应缓冲液为50mM甲酸铵(pH 7.0)。反应在摇床中进行,转速200rpm,温度设置为35℃,反应时间5h。反应结束离心去除全细胞,对获得的上清液适当稀释,采用实施例3样品检测方法进行检测;同时,以不添加乙醇脱氢酶作为对照:E.coli/pGEX-BuLTTA,采用实施例3样品检测方法进行检测;(2) In this implementation example, wild-type BuLTTA was first used to test the effect of coupling with the acetaldehyde elimination system. Reaction system: The reaction system was 1 mL, 30 mM p-methylsulfonylbenzaldehyde, 120 mM L-threonine, 50 μM PLP, 1 mM CaCl 2 and 40 mg mL -1 wet cells (recombinant pET-KkADH co-transformed with pGEX-BuLTTA recombinant large intestine Bacteria: E.coli/pET-KkADH-pGEX-BuLTTA), 10% DMSO, 10% isopropanol and 1 mM NADH; the reaction buffer was 50 mM ammonium formate (pH 7.0). The reaction was carried out in a shaker with a rotation speed of 200 rpm, a temperature set at 35° C., and a reaction time of 5 h. After the reaction, centrifuge to remove whole cells, dilute the obtained supernatant appropriately, and use the sample detection method in Example 3 for detection; at the same time, use no alcohol dehydrogenase as a control: E.coli/pGEX-BuLTTA, use Example 3 Sample testing method for testing;
结果如图9所示,与不耦合乙醛消除系统比较,乙醛消除系统的加入大大提升了L-苏氨酸转醛酶全细胞催化的效率,其中仅添加1mM的NADH便可达到几乎最大的底物转化率(≥99%),目标产物的de值也有一定的提升,最终达到88.9%。The results are shown in Figure 9. Compared with the uncoupled acetaldehyde elimination system, the addition of the acetaldehyde elimination system greatly improves the catalytic efficiency of L-threonine transaldolase in whole cells, and the almost maximum can be achieved by adding only 1mM NADH The substrate conversion rate (≥99%), the de value of the target product also has a certain promotion, and finally reaches 88.9%.
(3)本发明将底物芳香醛的浓度扩大至200mM,并进行1L规模的生物反应器转化,以测试L-苏氨酸转醛酶及其突变体M6在耦合乙醛消除系统时的转化效率。(3) The present invention expands the concentration of the substrate aromatic aldehyde to 200mM, and performs 1L-scale bioreactor transformation to test the transformation of L-threonine transaldolase and its mutant M6 when coupled with the acetaldehyde elimination system efficiency.
其全细胞催化体系为:800mM L-苏氨酸,200mM对甲磺酰基苯甲醛,0.2mM磷酸吡哆醛,2mM NADH,40mg mL-1苏氨酸转醛酶(或突变体M6)与乙醇脱氢酶共转化大肠杆菌全细胞(E.coli/pET-KkADH-pGEX-BuLTTA,E.coli/pET-KkADH-pGEX-M6),反应缓冲液为50mM的甲酸铵(pH 7.0),同时添加10%的DMSO与10%的异丙醇。通过自动控温装置控制反应温度35℃,自动流加25%的氨水控制pH7.0左右,转速400rpm,当转化率不再上升时结束反应。转化效果如表5所示。Its whole-cell catalytic system is: 800mM L-threonine, 200mM p-methylsulfonylbenzaldehyde, 0.2mM pyridoxal phosphate, 2mM NADH, 40mg mL -1 threonine transaldolase (or mutant M6) and ethanol Dehydrogenase co-transformed E. coli whole cells (E.coli/pET-KkADH-pGEX-BuLTTA, E.coli/pET-KkADH-pGEX-M6), the reaction buffer was 50mM ammonium formate (pH 7.0), while adding 10% DMSO and 10% isopropanol. The reaction temperature is controlled by an automatic temperature control device at 35°C, 25% ammonia water is automatically added to control the pH to about 7.0, and the rotation speed is 400 rpm. The reaction is terminated when the conversion rate no longer increases. The conversion effect is shown in Table 5.
表5:扩大反应结果Table 5: Expanded reaction results
结果显示,野生型L-苏氨酸转醛酶在200mM的底物醛添加的情况下只能获得30.2%的转化率,产物L-threo-对甲磺酰基苯丝氨酸的滴度达到60.4mM,突变体M6在和乙醛消除系统的耦连下,底物转化率达到了95%,目标产物滴度高达190mM,转化时间仅需4h。The result shows that wild-type L-threoline aldolase can only obtain 30.2% conversion rate under the situation that 200mM substrate aldehyde is added, and the titer of product L-threo-p-methylsulfonylphenylserine reaches 60.4mM, Under the coupling of the mutant M6 and the acetaldehyde elimination system, the substrate conversion rate reached 95%, the target product titer was as high as 190mM, and the conversion time was only 4h.
对比例1:Comparative example 1:
具体实施方式同实施例6的步骤(1)~(2),区别在于,分别调整乙醇脱氢酶为来源于Acetobacter pasteurianus的乙醇脱氢酶(ApADH)、Saccharomyces cerevisiae的乙醇脱氢酶(ScADH)、Zygosaccharomyces parabailii的乙醇脱氢酶(ZpADH)(其序列在NCBI上的编号分别为:WP_012812267、AJT77739.1、AQZ12029.1)。设置反应体系中NADH添加量为1mM,其他条件不变,结果如表6所示。The specific embodiment is the same as the steps (1) to (2) of Example 6, the difference is that the alcohol dehydrogenase is adjusted to be derived from the alcohol dehydrogenase (ApADH) of Acetobacter pasteurianus and the alcohol dehydrogenase (ScADH) of Saccharomyces cerevisiae respectively , Alcohol dehydrogenase (ZpADH) of Zygosaccharomyces parabailii (its sequence numbers on NCBI are respectively: WP_012812267, AJT77739.1, AQZ12029.1). The amount of NADH added in the reaction system was set to 1 mM, and other conditions remained unchanged. The results are shown in Table 6.
表6:不同来源的乙醇脱氢酶的反应结果Table 6: Reaction results of alcohol dehydrogenase from different sources
结果显示:引入不同的乙醇脱氢酶对于目标产物的转化效率都有较大的提升效果。其中KkADH的引入得到了最大的底物转化率以及最大的产物de值。The results show that the introduction of different alcohol dehydrogenases has a greater effect on the conversion efficiency of the target product. Among them, the introduction of KkADH got the maximum substrate conversion rate and the maximum product de value.
虽然本发明已以较佳实施例公开如上,但其并非用以限定本发明,任何熟悉此技术的人,在不脱离本发明的精神和范围内,都可做各种的改动与修饰,因此本发明的保护范围应该以权利要求书所界定的为准。Although the present invention has been disclosed above with preferred embodiments, it is not intended to limit the present invention. Any person familiar with this technology can make various changes and modifications without departing from the spirit and scope of the present invention. Therefore The scope of protection of the present invention should be defined by the claims.
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