CN115147334A - Bifurcation point detection method, image registration method, image segmentation method and system - Google Patents
Bifurcation point detection method, image registration method, image segmentation method and system Download PDFInfo
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Abstract
本发明提供分叉点检测方法、图像配准方法、图像分割方法及系统。树状结构分叉点检测方法通过深度学习网络检测树状结构中的分叉点,其特征在于,包括如下步骤:训练步骤,利用所述树状结构的分叉点拓扑图集,通过所述深度学习网络对用于检测所述树状结构的分叉点的模型进行训练;推理步骤,利用所述分叉点拓扑图集,对通过所述训练步骤训练后的所述模型检测到的所述分叉点进行强化。
The invention provides a bifurcation point detection method, an image registration method, an image segmentation method and a system. The tree-like structure bifurcation point detection method detects bifurcation points in a tree-like structure through a deep learning network. The deep learning network trains the model used to detect the bifurcation points of the tree structure; in the inference step, using the bifurcation point topology atlas, Strengthen the bifurcation point.
Description
技术领域technical field
本发明涉及从图像中检测树状结构的分叉点的树状结构分叉点检测方法及系统、使用该方法的图像配准方法及系统和图像分割方法及系统。The present invention relates to a tree structure branch point detection method and system for detecting tree structure branch points from an image, an image registration method and system using the method, and an image segmentation method and system.
背景技术Background technique
肺内部气管、血管或肝脏内部血管是人体的重要组织,这些内部血管或气管通常为树状结构,这些树状结构的检测或者分割(segmentation)是一个重要课题。另外,这些树状结构对于具有该树状结构的器官的分割和多模态图像配准来说也具有重要意义。Trachea in the lung, blood vessels or blood vessels in the liver are important tissues of the human body. These internal blood vessels or trachea are usually tree-like structures, and detection or segmentation of these tree-like structures is an important topic. In addition, these tree-like structures are also important for segmentation and multimodal image registration of organs with this tree-like structure.
专利文献1(WO2020/044840)记载了一种利用肺气管结构进行区域划分的装置,用于对包含在医学图像中的肺部区域进行划分。关于作为树状结构的气管中的关键点(landmark)的检测和定位,专利文献1中记载了提取包括分叉点的支气管结构以便根据支气管区域的多个分叉点位置进行区域的划分。另外,专利文献1中记载了使用机器学习来进行支气管结构的提取。Patent Document 1 (WO2020/044840) describes a device for region division using a pulmonary trachea structure, which is used to divide a lung region included in a medical image. Regarding detection and localization of landmarks in the trachea as a tree-like structure,
发明内容SUMMARY OF THE INVENTION
现有技术中的问题Problems in the prior art
如上所述,对于树状结构来说,分叉点是重要的关键点,专利文献1中提出了将支气管区域的多个分叉点位置用于区域划分,但是专利文献1的技术方案仅涉及区域划分而非图像分割,具体来说专利文献1是利用分叉点的位置将肺区域划分为例如上下方向的多个区域,或将肺区域划分为距离多个分叉点位置中的特定分叉点位置处于特定距离内的区域和处于特定距离以外的区域(参见专利文献1说明书0042段)。As described above, the bifurcation point is an important key point for the tree structure.
另外,现有技术的分割方法大多是在对树状结构进行分割后再从树状结构的分割图像中提取树状结构的中心线和分叉点。这些传统的方法多是基于图像的强度、几何形状等直接从图像中进行树状结构的分割,或者是基于深度学习直接进行树状结构的图像分割。作为关键点的分叉点并未在树状结构的分割中被充分利用。In addition, most of the segmentation methods in the prior art are to segment the tree structure and then extract the center line and the bifurcation points of the tree structure from the segmented images of the tree structure. Most of these traditional methods are based on the image intensity, geometric shape, etc. to directly segment the tree structure from the image, or directly perform the tree structure image segmentation based on deep learning. Bifurcation points as key points are not fully utilized in the segmentation of tree structures.
另外,作为分叉点的检测技术,专利文献1等现有技术中虽然提出了一些基于机器学习的树状结构或者树状结构分叉点的检测方法,但这些现有技术中的分叉点检测方法没有考虑分叉点之间的对应关系,检测精度和准确性不足。In addition, as a detection technique for a branch point, although some methods for detecting a tree structure or a branch point of a tree structure based on machine learning are proposed in the prior art such as
用于解决技术问题的手段Means for solving technical problems
本发明为解决上述现有技术的问题而提出,本发明提出了一种考虑了分叉点之间的对应关系的树状结构分叉点的检测方法和系统,进而提出了基于这样的分叉点检测方法的图像配准方法和图像分割方法以及系统。The present invention is proposed to solve the above-mentioned problems of the prior art. The present invention proposes a method and system for detecting bifurcation points in a tree structure that considers the corresponding relationship between bifurcation points, and further proposes a method and system based on such bifurcation points. Image registration method and image segmentation method and system of point detection method.
根据本发明的一个方面,提供了一种树状结构分叉点检测方法,通过深度学习网络检测树状结构中的分叉点,其特征在于,包括如下步骤:训练步骤,利用所述树状结构的分叉点拓扑图集,通过所述深度学习网络对用于检测所述树状结构的分叉点的模型进行训练;推理步骤,利用所述分叉点拓扑图集,对通过所述训练步骤训练后的所述模型检测到的所述分叉点进行强化。According to an aspect of the present invention, there is provided a method for detecting bifurcation points in a tree structure, which detects bifurcation points in a tree structure through a deep learning network, characterized in that it includes the following steps: a training step, using the tree The bifurcation point topology atlas of the structure is used to train the model for detecting the bifurcation points of the tree structure through the deep learning network; in the inference step, the bifurcation point topology atlas is used to pass the The bifurcation points detected by the model trained in the training step are strengthened.
由此,本发明利用通过深度学习网络训练的树状结构的关键点检测模型来检测树状结构中的分叉点,在训练过程中深度学习网络可以利用树状结构的多关键点的拓扑信息,在推理过程中将分叉点拓扑图集(topology atlas)与检测到的树状结构分叉点结合,对检测结果进行强化,从而将树状结构各个分叉点之间的对应信息用于分叉点检测,提高了分叉点检测的准确性和精度。Therefore, the present invention uses the key point detection model of the tree structure trained by the deep learning network to detect the bifurcation points in the tree structure, and the deep learning network can use the topology information of the multiple key points of the tree structure during the training process. , in the inference process, the topology atlas of the bifurcation point is combined with the detected bifurcation points of the tree structure to strengthen the detection results, so that the corresponding information between the bifurcation points of the tree structure is used for Bifurcation point detection improves the accuracy and precision of bifurcation point detection.
另外,本发明提供了基于上述分叉点检测方法的图像配准方法和图像分割方法。In addition, the present invention provides an image registration method and an image segmentation method based on the above-mentioned bifurcation point detection method.
具体来说,根据本发明的另一个方面,提供了一种图像配准方法,利用具有树状结构的器官的所述树状结构分叉点对所述器官的多个模态的图像进行配准,其特征在于,包括如下步骤:获取步骤,获取所述器官的所述多个模态的图像;树状结构分叉点检测步骤,通过上述的树状结构分叉点检测方法,在获得的所述器官的图像中检测所述树状结构的分叉点;以及配准步骤,利用检测出的所述分叉点对所述多个模态的图像进行配准。Specifically, according to another aspect of the present invention, an image registration method is provided, which uses the tree structure bifurcation points of an organ with a tree structure to match images of multiple modalities of the organ. It is characterized in that it includes the following steps: an acquisition step, acquiring images of the multiple modalities of the organ; a tree structure bifurcation point detection step, by using the above-mentioned tree structure bifurcation point detection method, after obtaining The bifurcation point of the tree structure is detected in the image of the organ; and the registration step is to register the images of the multiple modalities by using the detected bifurcation point.
根据本发明的又一个方面,提供了一种图像分割方法,对医学图像中的具有树状结构的器官进行分割,其特征在于,包括如下步骤:获取步骤,获取所述医学图像;树状结构分叉点检测步骤,通过上述的树状结构分叉点检测方法,在获取的所述医学图像中检测所述树状结构的分叉点;中心线生成步骤,利用检测到的所述分叉点,生成所述树状结构的中心线;以及分割步骤,根据生成的所述树状结构的中心线,分割所述树状结构。According to another aspect of the present invention, there is provided an image segmentation method for segmenting an organ with a tree-like structure in a medical image, characterized in that it includes the following steps: an acquiring step, acquiring the medical image; a tree-like structure In the step of detecting a bifurcation point, the bifurcation point of the tree structure is detected in the obtained medical image by the above-mentioned method for detecting a bifurcation point of a tree structure; in the step of generating a center line, the detected bifurcation is used. point to generate the center line of the tree structure; and a dividing step, dividing the tree structure according to the generated center line of the tree structure.
本发明还可以作为具备能实现上述各方法的各个步骤的功能模块的树状结构分叉点检测系统、图像配准系统、图像分割系统来实现,还可以作为使计算机执行上述各方法所包含的步骤的计算机程序来实现,还可以作为记录了上述计算机程序的记录介质来实现。The present invention can also be implemented as a tree structure bifurcation point detection system, an image registration system, and an image segmentation system having functional modules capable of implementing the various steps of the above-mentioned methods, and can also be implemented as a computer that executes the methods included in the above-mentioned methods. The steps are realized by a computer program, and can also be realized as a recording medium on which the above-mentioned computer program is recorded.
根据本发明,将树状结构各个分叉点之间的对应信息用于分叉点检测,由此提升了分叉点检测的准确性和精度。According to the present invention, the correspondence information between the branch points of the tree structure is used for branch point detection, thereby improving the accuracy and precision of branch point detection.
另外,根据本发明,将提升了分叉点检测的准确性和精度的分叉点检测结果用于多模态图像的配准等图像配准,从而提高了配准的效率和精度。In addition, according to the present invention, the bifurcation point detection result that improves the accuracy and precision of bifurcation point detection is used for image registration such as registration of multimodal images, thereby improving the efficiency and precision of registration.
另外,根据本发明,将提升了分叉点检测的准确性和精度的分叉点检测结果用于树状结构的图像分割,从而提高了分割的效率和精度。In addition, according to the present invention, the bifurcation point detection result which improves the accuracy and precision of bifurcation point detection is used for the image segmentation of the tree structure, thereby improving the efficiency and precision of the segmentation.
附图说明Description of drawings
图1是表示根据本发明第一实施方式的树状结构分叉点检测模型的训练和推理过程的流程图;FIG. 1 is a flow chart showing the training and inference process of the tree-structure bifurcation point detection model according to the first embodiment of the present invention;
图2是表示根据本发明第一实施方式的树状结构分叉点检测模型的训练过程的具体流程的示意图;2 is a schematic diagram showing a specific flow of a training process of a tree structure bifurcation point detection model according to the first embodiment of the present invention;
图3是表示根据本发明第一实施方式的树状结构分叉点检测模型的推理过程的具体流程的示意图;3 is a schematic diagram showing a specific flow of the reasoning process of the tree-structure bifurcation point detection model according to the first embodiment of the present invention;
图4是表示根据本发明第二实施方式的图像配准方法的流程图;FIG. 4 is a flowchart showing an image registration method according to a second embodiment of the present invention;
图5是表示根据本发明第二实施方式的图像配准方法中对检测结果进行修正的过程的说明图;5 is an explanatory diagram showing a process of correcting a detection result in an image registration method according to a second embodiment of the present invention;
图6是表示根据本发明第三实施方式的图像分割方法的流程图;6 is a flowchart showing an image segmentation method according to a third embodiment of the present invention;
图7是表示根据本发明第一实施方式的树状结构分叉点检测系统的功能框图。FIG. 7 is a functional block diagram showing a tree structure branch point detection system according to the first embodiment of the present invention.
具体实施方式Detailed ways
本发明涉及用于分叉点检测、图像配准、图像分割的方法及系统,这些方法可以通过独立的计算机等具有CPU(central process unit:中央处理器)的设备执行软件程序来实现,这些系统可以作为上述独立的计算机来实现,也可以作为能够执行上述方法的各个步骤的电路而以硬件的方式实现。并且,本发明的系统也可以作为磁共振成像装置(MRI)等医学图像采集装置中的一部分而预先安装在以上的医学图像采集装置中。The present invention relates to methods and systems for bifurcation point detection, image registration, and image segmentation. These methods can be implemented by executing software programs on a device with a CPU (central process unit) such as an independent computer. These systems It can be implemented as the above-mentioned independent computer, and can also be implemented in hardware as a circuit capable of executing each step of the above-mentioned method. In addition, the system of the present invention may be pre-installed in the above medical image acquisition apparatus as a part of a medical image acquisition apparatus such as a magnetic resonance imaging apparatus (MRI).
以下,参照附图说明本发明的优选实施方式。Hereinafter, preferred embodiments of the present invention will be described with reference to the accompanying drawings.
此外,在不同实施方式中,对于相同的部件使用相同的附图标记,并适当省略重复的说明。In addition, in different embodiments, the same reference numerals are used for the same components, and overlapping descriptions are appropriately omitted.
<第一实施方式><First Embodiment>
根据第一实施方式的本发明是一种树状结构分叉点的检测方法和系统,利用通过深度学习网络训练的树状结构的关键点检测模型来检测树状结构中的分叉点。The present invention according to the first embodiment is a method and system for detecting bifurcation points of a tree structure, using a key point detection model of a tree structure trained by a deep learning network to detect bifurcation points in the tree structure.
完整的检测模型深度学习框架包括两个主要部分,即训练(training)过程和推理(inference)过程。训练过程向模型输入带标签(或称真值:GT,Ground Truth)的训练数据集,计算输出的检测结果与真值之间的目标函数(损失函数),通过梯度下降、随机梯度下降等方法对网络参数进行校正,使得损失函数最小化。反复进行该过程直到网络输出的检测结果与真值之间的误差满足规定的精度,使模型达到收敛状态,减少模型预测值的误差。推理过程是指向已训练好的模型输入不带标签的现场数据(live data),来获得实际检测值的过程。本发明的树状结构分叉点的检测方法由上述训练过程和推理过程构成。The complete detection model deep learning framework consists of two main parts, namely, the training process and the inference process. The training process inputs a labeled (or ground truth: GT, Ground Truth) training data set to the model, calculates the objective function (loss function) between the output detection result and the true value, and uses gradient descent, stochastic gradient descent and other methods. The network parameters are corrected so that the loss function is minimized. This process is repeated until the error between the detection result output by the network and the true value meets the specified accuracy, so that the model reaches a state of convergence and reduces the error of the model predicted value. The inference process is the process of inputting unlabeled live data to the trained model to obtain the actual detection value. The method for detecting a branch point of a tree structure of the present invention is composed of the above-mentioned training process and inference process.
以下结合附图详细说明本发明的第一实施方式。The first embodiment of the present invention will be described in detail below with reference to the accompanying drawings.
图1是表示根据本发明第一实施方式的树状结构分叉点检测模型的训练和推理过程的流程图,其中图1的(a)表示训练过程,图1的(b)表示推理过程。FIG. 1 is a flowchart showing the training and inference process of the tree structure bifurcation point detection model according to the first embodiment of the present invention, wherein FIG. 1( a ) represents the training process and FIG. 1( b ) represents the inference process.
如图1所示,本发明的树状结构分叉点检测模型的训练过程包括如下步骤:步骤S100,输入图像集和关键点的真值(GT);步骤S200,生成样本和关键点热图;步骤S300,利用深度学习网络进行关键点检测器的训练;步骤S400,输出训练好的模型。本发明的树状结构分叉点检测模型的推理过程包括如下步骤:步骤S100’,向训练后的模型输入图像集;步骤S200’,利用训练后的模型检测关键点;步骤S300’,利用关键点拓扑图集强化检测结果。As shown in FIG. 1, the training process of the tree structure bifurcation point detection model of the present invention includes the following steps: Step S100, input the ground truth (GT) of an image set and key points; Step S200, generate a heat map of samples and key points ; Step S300, use the deep learning network to train the key point detector; Step S400, output the trained model. The reasoning process of the tree structure bifurcation point detection model of the present invention includes the following steps: step S100', inputting an image set to the trained model; step S200', using the trained model to detect key points; step S300', using the key The point topology atlas strengthens the detection results.
以下结合图2和图3详细说明训练过程和推理过程。The training process and the inference process are described in detail below with reference to FIG. 2 and FIG. 3 .
图2是表示根据本发明第一实施方式的树状结构分叉点检测模型的训练过程的具体流程的示意图。FIG. 2 is a schematic diagram showing a specific flow of the training process of the tree-structure bifurcation point detection model according to the first embodiment of the present invention.
如图2所示,步骤S100中的输入包含树状结构的3D图像集的输入(S101)和作为GT标签的树状结构的分叉点(即关键点)信息的输入(S102)。这里步骤S102中输入的GT标签可以是针对步骤S101中输入的3D图像集通过已知方法标注(annotation)出来的,可以是预先准备好的。也就是说,步骤S101和步骤S102可以是如图2中所示先后进行的,但也可以并行地进行,此时步骤S101和步骤S102之间的箭头可以省略。As shown in FIG. 2 , the input in step S100 includes the input of the tree-structured 3D image set ( S101 ) and the input of branch point (ie, key point) information of the tree-structure as GT tags ( S102 ). Here, the GT label input in step S102 may be annotated by a known method for the 3D image set input in step S101, and may be prepared in advance. That is to say, step S101 and step S102 may be performed sequentially as shown in FIG. 2 , but may also be performed in parallel, in which case the arrow between step S101 and step S102 may be omitted.
步骤S200针对输入的图像集进行图像预处理和变换,具体来说例如可以通过各向同性变换、强度变换、弹性变换等针对输入的图像集生成样本(S201)。步骤S200还针对输入的作为GT标签的关键点进行变换并生成GT热图(heatmap),例如可以通过高斯核热图等生成关键点的热图(S202)。Step S200 performs image preprocessing and transformation on the input image set, specifically, samples can be generated for the input image set through isotropic transformation, intensity transformation, elastic transformation, etc. (S201). Step S200 also transforms the input key points as GT labels and generates a GT heatmap (heatmap).
上述步骤S200的描述只是示例,图像集的预处理和变换以及GT热图生成可以采用本领域公知的现有技术的各种方法来实现。The above description of step S200 is just an example, and the preprocessing and transformation of the image set and the generation of the GT heat map can be implemented by various methods of the prior art known in the art.
步骤S300中,对分叉点检测模型进行训练。本发明的特征之一在于,在对分叉点检测模型进行训练时将分叉点拓扑图集引入训练过程,使得深度学习网络在训练过程中可以利用树状结构的多关键点的拓扑信息,从而提高分叉点检测的准确性和精度。In step S300, the bifurcation point detection model is trained. One of the features of the present invention is that when the bifurcation point detection model is trained, the bifurcation point topology atlas is introduced into the training process, so that the deep learning network can use the topology information of the multi-key points of the tree structure in the training process, Thus, the accuracy and precision of the bifurcation point detection are improved.
具体来说,本发明首先在构建网络架构时选择具有适合于本发明上述特征的特点的网络。例如在网络设计时选择适合于在每一个级别(scale)中捕获上述拓扑信息的网络种类,由于具有中间监管的堆叠网络能够提供重新评估中间热图和重新评估高阶空间关系的机制,因此本发明的深度学习网络优选采用堆叠网络。例如,本发明的深度学习网络可以是堆叠沙漏网络(Stacked Hourglass Network)或者耦合U网络(Coupled U-Network)。Specifically, the present invention first selects a network having characteristics suitable for the above-mentioned features of the present invention when constructing a network architecture. For example, in network design, a network type suitable for capturing the above topological information at each scale is selected. Since a stacked network with intermediate supervision can provide a mechanism to re-evaluate intermediate heatmaps and re-evaluate higher-order spatial relationships, this paper The inventive deep learning network preferably uses a stacked network. For example, the deep learning network of the present invention may be a Stacked Hourglass Network or a Coupled U-Network.
其次,本发明在模型训练的损失函数中包括表示树状结构分叉点拓扑图集与输出值之间的差异的项。损失函数(loss function)是用来估量模型的输出值P与真值G之间的不一致程度(误差值)的函数,通常的损失函数可以表示为L(P,G),本发明的特征之一在于,训练过程中的损失函数通过下式表示:Second, the present invention includes a term representing the difference between the tree-structure bifurcation point topology atlas and the output value in the loss function of model training. The loss function (loss function) is a function used to estimate the degree of inconsistency (error value) between the output value P of the model and the true value G. The usual loss function can be expressed as L(P, G), one of the characteristics of the present invention. One is that the loss function in the training process is expressed by the following formula:
Losstotal=λ1L(P,G)+λ2L(P,A)Loss total = λ 1 L(P, G)+λ 2 L(P, A)
其中,Losstotal表示模型的总的误差值;L(P,G)表示输出值与真值之间的差异;L(P,A)表示输出值与树状结构分叉点拓扑图集之间的差异;λ1和λ2是权重系数。Among them, Loss total represents the total error value of the model; L(P, G) represents the difference between the output value and the true value; L(P, A) represents the difference between the output value and the tree-structure bifurcation point topology atlas difference; λ 1 and λ 2 are weight coefficients.
L可以根据需要采用本领域常见的损失函数,例如LogLoss对数损失函数、平方损失函数、指数损失函数、Hinge损失函数等,这些损失函数的细节属于公知常识,在此不再赘述。L(P,G)的求值过程可采用现有技术中的各种方法,在此不再赘述。L(P,A)的值具体来说是将模型输出预测点集P与分叉点拓扑图集A进行位置和拓扑结构之间相似度的比较,通过函数L(P,A)求出二者之间拓扑结构之间的差异。上述的位置和拓扑结构之间相似度的比较可采用现有技术中的各种方法,在此不再赘述。拓扑图集A中包含不同级别分叉点之间的连接及边长关系,本发明计算预测点集P特定点之间的位置/拓扑结构与拓扑图集A中的位置/拓扑结构的差异,作为损失函数的一部分。L can use common loss functions in the field as needed, such as LogLoss logarithmic loss function, squared loss function, exponential loss function, Hinge loss function, etc. The details of these loss functions belong to common knowledge and will not be repeated here. The evaluation process of L(P, G) can adopt various methods in the prior art, which will not be repeated here. Specifically, the value of L(P,A) is to compare the similarity between the position and topology structure of the model output prediction point set P and the bifurcation point topology atlas A, and obtain the two by the function L(P,A). differences between topologies. Various methods in the prior art can be used to compare the similarity between the above-mentioned positions and topological structures, and details are not described herein again. The topology atlas A contains connections and side length relationships between bifurcation points at different levels, and the present invention calculates the difference between the position/topology structure between specific points in the predicted point set P and the position/topology structure in the topology atlas A, as part of the loss function.
作为权重系数的λ1和λ2为0~1之间的数,二者之和为1。λ1和λ2的具体数值可以根据经验事先选择,也可以如在训练过程中优化其它参数那样,通过调整权重系数λ1和λ2来计算输出的检测结果与真值之间的距离,以使该距离缩短的方式来优化权重系数λ1和λ2,选择能获得最优结果的权重系数值。λ 1 and λ 2 as weight coefficients are numbers between 0 and 1, and the sum of the two is 1. The specific values of λ 1 and λ 2 can be selected in advance according to experience, or the distance between the output detection result and the true value can be calculated by adjusting the weight coefficients λ 1 and λ 2 as in optimizing other parameters in the training process. The weighting coefficients λ 1 and λ 2 are optimized in such a way that the distance is shortened, and the value of the weighting coefficient that can obtain the optimal result is selected.
以上是对本发明第一实施方式的树状结构分叉点检测模型的训练过程的说明。如上所述,本发明在树状结构的关键点检测模型的训练中引入树状结构的分叉点拓扑图集,在训练过程中深度学习网络可以利用树状结构的多关键点的拓扑信息。The above is the description of the training process of the branch point detection model of the tree structure according to the first embodiment of the present invention. As described above, the present invention introduces a tree-structured bifurcation point topology atlas in the training of the tree-structured keypoint detection model, and the deep learning network can utilize the tree-structured multi-keypoint topology information during the training process.
图3是表示根据本发明第一实施方式的树状结构分叉点检测模型的推理过程的具体流程的示意图。FIG. 3 is a schematic diagram showing a specific flow of the reasoning process of the tree-structure bifurcation point detection model according to the first embodiment of the present invention.
如图3所示,在步骤S100’中,向训练后的树状结构分叉点检测模型输入图像集。在步骤S200’中,利用训练后的模型检测关键点。这里,步骤S200’中针对检测到的每个分叉点输出一个热图,热图中的亮点对应树状结构中的分叉点,理想情况下得到的每个热图应该只有一个亮点,但是由于检测模型的准确性和精度以及噪声等导致的误检测,在所得到的热图中可能存在不止一个亮点。为解决此问题,本发明的特征之一在于,在接下来的步骤S300’中利用分叉点拓扑图集强化检测结果。As shown in Figure 3, in step S100', an image set is input to the trained tree structure bifurcation point detection model. In step S200', key points are detected using the trained model. Here, in step S200', a heatmap is output for each detected bifurcation point, and the bright spots in the heatmap correspond to the bifurcation points in the tree structure. Ideally, each heatmap obtained should have only one bright spot, but There may be more than one bright spot in the resulting heatmap due to false detections caused by the accuracy and precision of the detection model and noise. In order to solve this problem, one of the features of the present invention is that in the next step S300', the detection result is enhanced by using the bifurcation point topology atlas.
分叉点的拓扑图集可以用于其检测结果的强化是因为,对例如血管或气管等具有树状结构的管状器官来说,树状结构的分叉点虽然位置可能不同,但总体来说具有相对稳定的拓扑结构。如肝血管或肺气道/血管等基本上都具有由第一级分叉点、第二级分叉点1、第二级分叉点2……构成的标准的或者可以被标准化的拓扑结构,因此通过对分叉点检测模型输出的分叉点检测结果应用分叉点的拓扑图集,筛选掉不符合分叉点拓扑图集的检测结果可以对检测结果进行强化,特别是越高级别的分叉点通过上述强化而越能够被稳定和准确地检测出来。The topological atlas of bifurcation points can be used to enhance the detection results because, for tubular organs with tree-like structures such as blood vessels or trachea, although the location of the bifurcation points of the tree-like structure may be different, overall Has a relatively stable topology. Such as liver blood vessels or pulmonary airways/vessels basically have a standard or can be standardized topology consisting of a first-order bifurcation point, a second-
为此,在步骤S300’中,通过分叉点拓扑图集对检测到的分叉点进行筛选,图3以肝脏的门静脉为例示出了树状结构检测模型的推理过程中强化检测结果的过程,在检测模型输出的结果中包括与分叉点1~分叉点N分别对应的N个热图,其中各个热图中分别包含针对该分叉点的极值点(热图中的亮点)候选,这些极值点候选的数目可能不止一个。如图所示,本发明根据肝脏的门静脉拓扑结构中例如门静脉第1级分叉点、门静脉第2级右1分叉点、门静脉第2级右2分叉点、门静脉第2级左1分叉点、门静脉第2级左2分叉点……这样的分叉点间的级别关系和空间位置关系等,对包含多个极值点候选的热图中的极值点进行筛选,剔除与分叉点拓扑结构不符的极值点,为每个热图只保留一个极值点作为强化后的检测结果。上述剔除的具体方法可以采用本领域通用的方法,在此不再赘述。To this end, in step S300 ′, the detected bifurcation points are screened through the bifurcation point topology atlas. FIG. 3 takes the portal vein of the liver as an example to illustrate the process of strengthening the detection results in the inference process of the tree structure detection model. , the output result of the detection model includes N heatmaps corresponding to the
以上是对本发明第一实施方式的树状结构分叉点检测模型的推理过程的说明。如上所述,本发明在树状结构的关键点检测模型的推理中引入树状结构的分叉点拓扑图集,在推理过程中将分叉点拓扑图集与检测到的树状结构分叉点结合,对检测结果进行强化。The above is the description of the reasoning process of the tree structure branch point detection model according to the first embodiment of the present invention. As mentioned above, the present invention introduces a tree-structured bifurcation point topology atlas in the reasoning of the tree-structured key point detection model, and bifurcates the bifurcation point topology atlas and the detected tree structure during the inference process. Points are combined to strengthen the detection results.
从而,在包含上述训练过程和推理过程的本发明的树状结构分叉点检测方法中,通过将树状结构各个分叉点之间的对应信息用于分叉点检测,提高了分叉点检测的准确性和精度。Therefore, in the tree structure bifurcation point detection method of the present invention including the above training process and reasoning process, by using the corresponding information between the bifurcation points of the tree structure for bifurcation point detection, the bifurcation point is improved. Detection accuracy and precision.
本发明针对树状结构分叉点检测方法中的训练过程和推理过程均做出改进,通过改进后的训练过程和改进后的推理过程构成的检测方法实现了本发明的目的。但是,不难理解,只针对训练过程和推理过程中的任一方做出的改进同样属于本发明的保护范围,同样可以实现本发明的目的。The present invention improves both the training process and the inference process in the tree structure bifurcation point detection method, and achieves the object of the present invention through the detection method composed of the improved training process and the improved inference process. However, it is not difficult to understand that improvements made only for either the training process or the reasoning process also belong to the protection scope of the present invention, and can also achieve the purpose of the present invention.
另外,本发明还可以包含各种变形。例如,对于不同器官来说,树状结构的分叉点拓扑可能是标准的也可能因例如性别等个体因素而存在差异。因此本发明中的分叉点的拓扑图集可以使用预先准备好的标准拓扑图集,也可以是针对这些个体因素而例如通过训练过程得到的非标准的拓扑图集。In addition, the present invention may include various modifications. For example, the bifurcation point topology of the tree structure may be standard for different organs or it may vary due to individual factors such as gender. Therefore, the topological atlas of the bifurcation point in the present invention may use a pre-prepared standard topological atlas, or may be a non-standard topological atlas obtained by, for example, a training process for these individual factors.
以下说明第一实施方式的树状结构分叉点检测系统。图7是表示根据本发明第一实施方式的树状结构分叉点检测系统的功能框图。如图7所示,第一实施方式的树状结构分叉点检测系统1,是一种通过深度学习网络检测树状结构中的分叉点的树状结构分叉点检测系统,具备:训练装置10,利用树状结构的分叉点拓扑图集,通过深度学习网络对用于检测树状结构的分叉点的模型进行训练;推理装置20,利用分叉点拓扑图集,对通过训练装置训练后的模型检测到的分叉点进行强化。The tree structure branch point detection system according to the first embodiment will be described below. FIG. 7 is a functional block diagram showing a tree structure branch point detection system according to the first embodiment of the present invention. As shown in FIG. 7 , the tree structure bifurcation
以上针对第一实施方式的树状结构分叉点检测方法和系统进行了说明。根据本发明,利用通过深度学习网络训练的树状结构的关键点检测模型来检测树状结构中的分叉点,在训练过程中深度学习网络可以利用树状结构的多关键点的拓扑信息,在推理过程中利用分叉点拓扑图集对检测结果进行强化。由此,本发明将树状结构各个分叉点之间的对应信息用于分叉点检测,提升了分叉点检测的准确性和精度。The method and system for detecting a branch point of a tree structure according to the first embodiment have been described above. According to the present invention, the key point detection model of the tree structure trained by the deep learning network is used to detect the bifurcation points in the tree structure, and the deep learning network can use the topology information of the multiple key points of the tree structure in the training process, In the inference process, the topological atlas of bifurcation points is used to strengthen the detection results. Therefore, the present invention uses the corresponding information between the branch points of the tree structure for branch point detection, which improves the accuracy and precision of branch point detection.
<第二实施方式><Second Embodiment>
根据第二实施方式的本发明将第一实施方式的树状结构分叉点检测方法应用于医学图像的配准,特别是多模态医学图像的配准。The present invention according to the second embodiment applies the tree-structure bifurcation point detection method of the first embodiment to the registration of medical images, especially the registration of multimodal medical images.
以下结合附图详细说明本发明的第二实施方式。The second embodiment of the present invention will be described in detail below with reference to the accompanying drawings.
图4是表示根据本发明第二实施方式的图像配准方法的流程图。如图4所示,本发明的图像配准方法包括如下步骤。FIG. 4 is a flowchart showing an image registration method according to a second embodiment of the present invention. As shown in FIG. 4 , the image registration method of the present invention includes the following steps.
步骤S4100中,获取器官的多个模态的图像。以作为术前图像的肝脏3D图像和作为术中图像的肝脏2D图像之间的配准为例对本实施方式进行说明,此时,步骤S4100可以包括获取3D的术前MR/CT图像集的步骤(步骤S4101)和获取针对同一器官的2D术中US(超声波)等图像集的步骤(S4102)。In step S4100, images of multiple modalities of the organ are acquired. The present embodiment will be described by taking the registration between the 3D liver image as the preoperative image and the 2D liver image as the intraoperative image as an example. In this case, step S4100 may include the step of acquiring a 3D preoperative MR/CT image set (step S4101) and a step of acquiring a 2D intraoperative US (ultrasound) image set for the same organ (S4102).
步骤S4200中,在获得的器官的图像中检测作为树状结构的肝脏血管的分叉点;步骤S4300中,利用肝脏血管3D拓扑图集强化肝脏血管分叉点检测结果。In step S4200, the bifurcation points of the liver blood vessels as a tree structure are detected in the obtained images of the organs; in step S4300, the detection results of the bifurcation points of the liver blood vessels are enhanced by using the 3D topology atlas of the liver blood vessels.
这里,步骤S4200和S4300具体来说可以通过第一实施方式中说明的树状结构分叉点检测方法中的各个步骤来实现。换句话说,图4中虚线包围的由步骤S4200和S4300构成的树状结构分叉点的检测和强化可以使用第一实施方式中说明的本发明的树状结构分叉点检测方法来进行,例如步骤S4200对应于第一实施方式中的步骤S200’,步骤S4300对应于第一实施方式中的步骤S300’。Here, steps S4200 and S4300 can be specifically implemented through the respective steps in the tree structure bifurcation point detection method described in the first embodiment. In other words, the detection and enhancement of the branch point of the tree structure formed by the steps S4200 and S4300 surrounded by the dotted line in FIG. For example, step S4200 corresponds to step S200' in the first embodiment, and step S4300 corresponds to step S300' in the first embodiment.
在本发明用于对作为术前图像的3D图像和作为术中图像的2D图像进行配准的情况下,步骤S4200可以针对3D图像和2D图像分为两个步骤S4201和S4202来分别进行,其中3D图像的分叉点检测步骤S4201和2D图像的分叉点检测步骤S4202可以分别采用第一实施方式中说明的本发明的树状结构分叉点检测方法来进行。另一方面,2D图像由于分叉点检测比较简单,因此为加快处理速度减少处理负荷,2D图像的分叉点检测步骤S4202可以不使用本发明的树状结构分叉点检测方法而仅通过例如手动来进行。在这种情况下,步骤S4300仅针对采用本发明树状结构分叉点检测方法的3D图像的部分(步骤S4201的输出)执行即可。In the case where the present invention is used to register a 3D image as a preoperative image and a 2D image as an intraoperative image, step S4200 may be divided into two steps S4201 and S4202 for the 3D image and the 2D image, respectively, wherein The bifurcation point detection step S4201 of the 3D image and the bifurcation point detection step S4202 of the 2D image can be respectively performed by using the tree structure bifurcation point detection method of the present invention described in the first embodiment. On the other hand, the 2D image is relatively simple to detect the bifurcation point, so in order to speed up the processing speed and reduce the processing load, the bifurcation point detection step S4202 of the 2D image may not use the tree structure bifurcation point detection method of the present invention, but only by, for example, Do it manually. In this case, step S4300 may only be executed for the part of the 3D image (the output of step S4201 ) to which the tree structure bifurcation point detection method of the present invention is applied.
步骤S4400中,利用通过步骤S4200和步骤S4300检测出的例如肝脏血管分叉点对术前肝脏图像和术中肝脏图像进行配准。利用血管分叉点进行包含血管的图像配准可以采用已知的任何现有技术,因此不再赘述。In step S4400, the preoperative liver image and the intraoperative liver image are registered using, for example, the bifurcation points of liver blood vessels detected in steps S4200 and S4300. Using the blood vessel bifurcation points to perform image registration including blood vessels may use any known prior art, and thus will not be described again.
这里,为提高配准的精度,减少配准的处理负荷,本发明在进行了树状结构分叉点检测后,在步骤S4400中进行配准之前,还可以通过器官的分割结果对树状结构分叉点的检测结果进行修正。图5是表示根据本发明第二实施方式的图像配准方法中在步骤S4400中配准之前对检测结果进行修正的过程的说明图。如图5所示,通过对例如肝脏进行分割获得肝组织的分割结果图像,将分割结果图像作为模板应用于肝脏血管分叉点的检测结果,例如将位于分割结果图像的肝组织区内的热图中的亮点保留为分叉点检测结果,而将分割结果图像的肝组织区外的亮点排除。由此,在配准之前先对分叉点进行修正,从而提高了配准的精度,并且能减少不必要的处理负荷。图5中的PV和HV分别表示肝脏的门静脉和肝静脉。Here, in order to improve the accuracy of the registration and reduce the processing load of the registration, after the branch point detection of the tree structure is performed in the present invention, before the registration is performed in step S4400, the segmentation result of the organ can also be used for the tree structure. The detection result of the bifurcation point is corrected. FIG. 5 is an explanatory diagram showing a process of correcting the detection result before registration in step S4400 in the image registration method according to the second embodiment of the present invention. As shown in FIG. 5 , the segmentation result image of liver tissue is obtained by segmenting, for example, the liver, and the segmentation result image is used as a template to apply to the detection result of the bifurcation point of liver blood vessels. The bright spots in the figure are retained as the bifurcation point detection results, and the bright spots outside the liver tissue area of the segmentation result image are excluded. Therefore, the bifurcation point is corrected before the registration, thereby improving the accuracy of the registration and reducing unnecessary processing load. PV and HV in Figure 5 represent the portal and hepatic veins of the liver, respectively.
返回图4继续说明,在步骤S4400通过分叉点进行多模态图像的配准之后,还可以在步骤S4500中通过其它结构对多模态图像进一步进行精细配准。精细配准的过程显然可以省略,因此步骤S4500的操作并非是必须的。Returning to FIG. 4 to continue the description, after the multi-modal image registration is performed through the bifurcation point in step S4400, the multi-modal image can be further finely registered by other structures in step S4500. The process of fine registration can obviously be omitted, so the operation of step S4500 is not necessary.
另外,根据本发明的图像配准方法,在步骤S4400的配准中除了使用树状结构的分叉点,当然还可以使用树状结构本身。此时,例如在检测出树状结构分叉点后,利用检测到的树状结构的分叉点生成器官的树状结构中心线,并根据生成的树状结构中心线进行器官的树状结构分割,以生成树状结构的分割图像。进而,配准步骤S4400根据所生成的树状结构图像对多个模态的图像进行配准。In addition, according to the image registration method of the present invention, in addition to using the bifurcation points of the tree structure in the registration in step S4400, of course, the tree structure itself can also be used. In this case, for example, after the branch point of the tree structure is detected, the tree structure center line of the organ is generated using the detected branch point of the tree structure, and the tree structure of the organ is performed based on the generated tree structure center line. segmentation to generate a tree-structured segmented image. Furthermore, in the registration step S4400, images of multiple modalities are registered according to the generated tree structure image.
上述利用分叉点的配准、利用树状结构的配准以及精细配准等可以使用本领域公知的技术来实现,因此不再赘述。The above-mentioned registration using the bifurcation point, the registration using the tree structure, and the fine registration can be implemented using techniques known in the art, and thus will not be described again.
第二实施方式的图像配准系统是一种利用具有树状结构的器官的分叉点对器官的多个模态的图像进行配准的图像配准系统,具备:获取装置,获取器官的多个模态的图像;树状结构分叉点检测装置,通过第一实施方式记载的树状结构分叉点检测方法,在获得的器官的图像中检测树状结构的分叉点;以及配准装置,利用检测出的分叉点对多个模态的图像进行配准。The image registration system according to the second embodiment is an image registration system for registering images of a plurality of modalities of an organ using bifurcation points of an organ having a tree-like structure, and includes an acquisition device that acquires multiple modalities of an organ. an image of each modality; a device for detecting branching points of a tree-like structure, by using the method for detecting branching-points of a tree-like structure described in the first embodiment, to detect the branching points of the tree-like structure in the obtained image of the organ; and registration The device uses the detected bifurcation points to register images of multiple modalities.
以上针对第二实施方式的图像配准方法和系统进行了说明。在以上的说明中仅示出了作为术前图像的3D图像和作为术中图像的2D图像之间的配准,但本发明的图像配准方法显然还可以适用于其它模态的图像,可以适用于更多模态的图像之间的配准。另外,以上以肝脏血管为例进行了第二实施方式的说明,但是本发明的图像配准方法显然可以应用于其它具有树状结构的器官的配准。The image registration method and system of the second embodiment have been described above. In the above description, only the registration between the 3D image as the preoperative image and the 2D image as the intraoperative image is shown, but the image registration method of the present invention can obviously also be applied to images of other modalities. Registration between images for more modalities. In addition, the second embodiment is described above by taking the liver blood vessel as an example, but the image registration method of the present invention can obviously be applied to the registration of other organs having a tree-like structure.
第二实施方式除了可以获得第一实施方式的效果外,还可以获得提高例如术前图像和术中图像等多模态图像的配准精度的效果。In addition to the effect of the first embodiment, the second embodiment can also obtain the effect of improving the registration accuracy of multimodal images such as preoperative images and intraoperative images.
<第三实施方式><Third Embodiment>
根据第三实施方式的本发明将第一实施方式的树状结构分叉点检测方法应用于图像分割。The present invention according to the third embodiment applies the tree structure branch point detection method of the first embodiment to image segmentation.
以下结合附图详细说明本发明的第三实施方式。The third embodiment of the present invention will be described in detail below with reference to the accompanying drawings.
图6是表示根据本发明第三实施方式的图像分割方法的流程图。FIG. 6 is a flowchart showing an image segmentation method according to a third embodiment of the present invention.
如图6所示,本发明的图像分割方法包括如下步骤:步骤S6100,获取医学图像;步骤S6200,在获取的医学图像中检测树状结构的分叉点,其中步骤S6200可以使用第一实施方式中说明的本发明的树状结构分叉点检测方法的各个步骤来实现;步骤S6300,利用检测到的分叉点生成树状结构的中心线;步骤S6400,根据生成的树状结构中心线进行树状结构的分割。As shown in FIG. 6 , the image segmentation method of the present invention includes the following steps: step S6100, obtaining a medical image; step S6200, detecting the bifurcation points of the tree structure in the obtained medical image, wherein step S6200 can use the first embodiment Each step of the tree structure bifurcation point detection method of the present invention described in S6300 is used to generate the center line of the tree structure by using the detected bifurcation points; step S6400, according to the generated tree structure center line Segmentation of tree structures.
以树状结构是血管为例,步骤S6300可以通过本领域公知的利用关键点提取中心线的方法来实现,例如血管跟踪(vessel tracking)法等,步骤S6400可以通过基于阈值的分割、基于图像强度或者几何学特征等传统血管分割方法、基于深度学习的分割方法等实现,因此其细节在此不再赘述。Taking the tree-like structure as a blood vessel as an example, step S6300 can be implemented by a method known in the art for extracting centerlines by using key points, such as a blood vessel tracking method, etc. Step S6400 can be achieved by threshold-based segmentation, image intensity-based Or traditional blood vessel segmentation methods such as geometric features, segmentation methods based on deep learning, etc. are implemented, so the details are not repeated here.
第三实施方式的图像分割系统是一种对医学图像中的具有树状结构的器官进行分割的图像分割系统,具备:获取装置,获取医学图像;树状结构分叉点检测装置,通过第一实施方式记载的树状结构分叉点检测方法,在获取的医学图像中检测树状结构的分叉点;中心线生成装置,利用检测到的所叉点,生成树状结构的中心线;以及分割装置,根据生成的树状结构的中心线,分割树状结构。The image segmentation system according to the third embodiment is an image segmentation system for segmenting organs with a tree-like structure in a medical image, and includes: an acquisition device for acquiring a medical image; a tree-like structure bifurcation point detection device for The tree-like structure bifurcation point detection method described in the embodiment, detects bifurcation points of the tree-like structure in the acquired medical image; the centerline generating device generates the centerline of the tree-like structure by using the detected bifurcation points; and The dividing means divides the tree structure according to the center line of the generated tree structure.
以上针对第三实施方式的图像分割方法和系统进行了说明。第三实施方式除了可以获得第一实施方式的效果外,还可以获得提高树状结构分割精度的效果。The image segmentation method and system of the third embodiment have been described above. In addition to the effect of the first embodiment, the third embodiment can also obtain the effect of improving the accuracy of tree structure segmentation.
<其他变形例><Other modification examples>
本发明并不限于以上说明的实施方式,还可以进行多种变形。The present invention is not limited to the above-described embodiments, and various modifications are possible.
例如,在以上各个实施方式中以血管为例进行了说明,但本发明还能够用于气管等其它管状结构的器官。For example, in each of the above embodiments, a blood vessel has been described as an example, but the present invention can also be applied to organs having other tubular structures such as a trachea.
本发明的系统也可以作为能够实现各个实施方式中所说明的功能的电路安装在医用设备中,也可以作为能够使计算机执行的程序,储存于磁盘(软盘、硬盘等)、光盘(CD-ROM、DVD、BD等)、光磁盘(MO)、半导体存储器等存储介质而发布。The system of the present invention may be installed in a medical device as a circuit capable of realizing the functions described in the respective embodiments, or may be stored in a magnetic disk (a floppy disk, a hard disk, etc.), an optical disk (CD-ROM, etc.) as a program that can be executed by a computer , DVD, BD, etc.), magneto-optical disk (MO), semiconductor memory and other storage media.
而且,基于从存储介质安装于计算机的程序的指示在计算机上运转的OS(操作系统)、数据库管理软件、网络软件等的MW(中间件)等也可以执行用于实现上述实施方式的各处理的一部分。Furthermore, OS (Operating System), database management software, MW (middleware) such as network software, etc. that operate on the computer based on an instruction from a program installed in the computer from the storage medium may execute each process for realizing the above-described embodiments. a part of.
以上说明了本发明的几个实施方式,但这些实施方式是作为例子而提出的,并不是想限定发明范围。这些新的实施方式可以以其他各种各样的方式实施,可以在不脱离发明主旨的范围内进行各种各样的省略、置换和变更。这些实施方式或其变形包含在发明范围或主旨内,并且也包含在权利要求范围中记载的发明及其均等的范围内。Several embodiments of the present invention have been described above, but these embodiments are presented as examples and are not intended to limit the scope of the invention. These novel embodiments can be implemented in various other forms, and various omissions, substitutions, and changes can be made without departing from the gist of the invention. These embodiments and modifications thereof are included in the scope and spirit of the invention, and are also included in the invention described in the scope of the claims and the scope of their equivalents.
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