CN115115598A - Laryngeal carcinoma cell image classification method based on global Gabor filtering and local LBP (local binary pattern) features - Google Patents
Laryngeal carcinoma cell image classification method based on global Gabor filtering and local LBP (local binary pattern) features Download PDFInfo
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Abstract
本发明提供一种基于全局Gabor滤波和局部LBP特征喉癌细胞图像分类方法,包括如下步骤:S1、获取喉癌细胞图像数据集,进行数据预处理;S2、提取图像全局特征信息;S3、提取图像局部特征信息;S4、图像分类器训练;S5、测试图像标签预测,得到测试结果。本发明采用Gabor滤波方法和LBP方法,能够准确高效地对喉癌细胞图像进行分类,兼具更优的分类准确率和kappa系数。
The present invention provides a laryngeal cancer cell image classification method based on global Gabor filtering and local LBP features, comprising the following steps: S1, acquiring an image data set of laryngeal cancer cells, and performing data preprocessing; S2, extracting image global feature information; S3, extracting Image local feature information; S4, image classifier training; S5, test image label prediction to obtain test results. The invention adopts the Gabor filtering method and the LBP method, which can accurately and efficiently classify the images of laryngeal cancer cells, and has better classification accuracy and kappa coefficient.
Description
技术领域technical field
本发明涉及图像处理技术领域,具体涉及一种基于全局Gabor滤波和局部LBP特征喉癌细胞图像分类方法。The invention relates to the technical field of image processing, in particular to a method for classifying images of laryngeal cancer cells based on global Gabor filtering and local LBP features.
背景技术Background technique
一个多世纪以前,基本的诊断主要依靠医生根据病人自我诉说、生病症状的经验判断辨别,望闻问切依然是医生们悬壶济世、治病救人的传统手段。随着科学技术的不断进步,近两三百年才出现的现代医学开始了迅猛发展。随着医学科学研究水平的不断提高,新型药物和新式疗法的出现,人类对于疾病出现的原因进行了更深入的了解认识,对于各种疾病的治疗防控方法不断增加,诊疗效果也得到显著的提高。癌症虽然凶猛,治疗方法只有放疗、化疗、靶向药物治疗等寥寥几种,治愈成功率极低,为了能在癌症早期甚至未发展之前就能发现并及时治疗,对癌症的精准识别并分类就是关键。为了能在癌症初期或未发展之前就开始治疗,不至于拖成中期甚至晚期,对癌症的早期诊断就变成了重中之重,如何提高癌症识别的准确度也就成为了一大难题。More than a century ago, the basic diagnosis mainly relied on doctors to judge and distinguish based on the patients' self-reporting and the symptoms of illness. Looking, hearing, asking, and inquiring is still the traditional method for doctors to help the world and treat diseases and save people. With the continuous advancement of science and technology, modern medicine, which has only appeared in the past two or three hundred years, has begun to develop rapidly. With the continuous improvement of the level of medical scientific research and the emergence of new drugs and new therapies, human beings have a deeper understanding of the causes of diseases, and the treatment and prevention methods for various diseases have been continuously increased, and the diagnosis and treatment effects have also been significantly improved. improve. Although cancer is ferocious, there are only a few treatment methods such as radiotherapy, chemotherapy, and targeted drug therapy. The success rate of cure is extremely low. In order to detect and treat cancer at an early stage or even before it develops, accurate identification and classification of cancer is The essential. In order to start treatment at the early stage or before the development of cancer, so as not to delay to the middle stage or even late stage, the early diagnosis of cancer has become the top priority, and how to improve the accuracy of cancer identification has become a major problem.
癌细胞图像分类,是一种根据细胞显露的不同特征,将不同类别的细胞图像区分开来的方法。现有分类方法按照不同特征可以划分为基于颜色特征、基于纹理特征、基于形状特征等几种,在这其中,基于纹理特征的图像分类技术就是对于荧光染色的喉癌图像分类最有效的方法。纹理分类具有强鲁棒性、高精准度、旋转不变性的优点。Cancer cell image classification is a method of distinguishing different types of cell images according to the different features revealed by cells. The existing classification methods can be divided into color-based features, texture-based features, and shape-based features according to different features. Among them, the image classification technology based on texture features is the most effective method for the classification of fluorescent dyed laryngeal cancer images. Texture classification has the advantages of strong robustness, high accuracy, and rotation invariance.
准确的喉癌细胞分类模型在很大程度上,严重依所提取的细胞特征。Gabor滤波提取的特征具有较强的空间性、尺度和方向可调性以及对光照变化不敏感的特性,但是Gabor函数往往提取的是图像的全局特征,而细胞的局部细节特征对于准确分类也尤为重要。因此,本发明将可以提取图像局部纹理细节特征的局部二值法(Local Binary Pattern,LBP)与全局特征提取Gabor方法结合起来,提出一种准确、有效地对喉癌细胞图像进行分类的算法。Accurate laryngeal cancer cell classification models are largely dependent on the extracted cellular features. The features extracted by the Gabor filter have strong spatial, scale and direction tunability and are insensitive to illumination changes, but the Gabor function often extracts the global features of the image, and the local detailed features of the cells are especially for accurate classification. important. Therefore, the present invention combines Local Binary Pattern (LBP), which can extract local texture detail features of images, and Gabor method for global feature extraction, and proposes an algorithm for classifying images of laryngeal cancer cells accurately and effectively.
发明内容SUMMARY OF THE INVENTION
本发明要解决的技术问题是提供一种基于全局Gabor滤波和局部LBP特征喉癌细胞图像分类方法,采用Gabor滤波方法和LBP方法分别提取喉癌细胞数据集的全局纹理特征和提取喉癌细胞数据集的局部纹理特征,将全局和局部纹理特征结合起来,训练SVM分类器,实现对喉癌细胞图像准确分类。The technical problem to be solved by the present invention is to provide a method for classifying laryngeal cancer cells based on global Gabor filtering and local LBP features. The local texture features of the set are combined, and the global and local texture features are combined to train the SVM classifier to achieve accurate classification of laryngeal cancer cell images.
为解决上述技术问题,本发明的实施例提供一种基于全局Gabor滤波和局部LBP特征喉癌细胞图像分类方法,包括以下步骤:In order to solve the above-mentioned technical problems, an embodiment of the present invention provides a method for classifying images of laryngeal cancer cells based on global Gabor filtering and local LBP features, comprising the following steps:
S1、获取喉癌细胞图像数据集,进行数据预处理;S1. Obtain an image data set of laryngeal cancer cells, and perform data preprocessing;
S2、提取图像全局特征信息;S2, extracting the global feature information of the image;
S3、提取图像局部特征信息;S3, extracting local feature information of the image;
S4、图像分类器训练;S4, image classifier training;
S5、测试图像标签预测,得到测试结果。S5, test image label prediction, and obtain a test result.
其中,所述步骤S1的具体步骤为:Wherein, the specific steps of the step S1 are:
S1.1、随机打乱数据集合中元素顺序;S1.1. Randomly shuffle the order of elements in the data set;
S1.2、将全部数据集的一部分元素抽取出来作为训练集,另一部分数据元素作为测试集;S1.2. Extract a part of the elements of the entire data set as a training set, and another part of the data elements as a test set;
S1.3、将导入的喉癌细胞图像统一拉伸至50×50像素数位大小尺寸并归一化图像像素。S1.3, uniformly stretch the imported laryngeal cancer cell image to a digital size of 50×50 pixels and normalize the image pixels.
其中,所述步骤S1.2中,全部数据集的80%元素抽取出来作为训练集,剩余20%数据元素作为测试集。Wherein, in the step S1.2, 80% of the elements of the entire data set are extracted as the training set, and the remaining 20% of the data elements are used as the test set.
其中,所述步骤S2包括以下步骤:Wherein, the step S2 includes the following steps:
S2.1、设置40个Gabor滤波核,包括5种尺度Gabor滤波核和8种角度Gabor滤波核;S2.1. Set 40 Gabor filter kernels, including 5 scale Gabor filter kernels and 8 angle Gabor filter kernels;
S2.2、循环遍历步骤S2.1中设置的40个Gabor滤波核,将每个Gabor滤波核与原始图像进行滤波运算得到40个滤波后图像;S2.2. Loop through the 40 Gabor filter kernels set in step S2.1, and perform filtering operations on each Gabor filter kernel and the original image to obtain 40 filtered images;
S2.3、将滤波后Gabor图进行矩阵加得到一个50×50像素数位大小的Gabor全局特征矩阵。S2.3. Add the filtered Gabor map to a matrix to obtain a Gabor global feature matrix with a size of 50×50 pixels.
进一步,所述步骤S2.1中,5种尺度分别为16像素、32像素、64像素、128像素、256像素,8个角度方向分别为0度、45度、90度、135度、180度、225度、270度、315度。Further, in the step S2.1, the five scales are 16 pixels, 32 pixels, 64 pixels, 128 pixels, and 256 pixels, respectively, and the eight angular directions are 0 degrees, 45 degrees, 90 degrees, 135 degrees, and 180 degrees, respectively. , 225 degrees, 270 degrees, 315 degrees.
其中,所述步骤S3的具体步骤为:Wherein, the specific steps of the step S3 are:
S3.1、将检测窗口定为3×3像素数位大小的小区域,对于每个小区域中的中心像素(以窗口中心像素为阈值),将相邻的8个像素的灰度值与其进行比较,若周围像素值大于中心像素值,则该像素点的位置被标记为1,否则为0,这样,3*3邻域内的8个点经比较可产生8位二进制数,即得到该窗口中心像素点的LBP(Local Binary Pattern)模式值;S3.1. Set the detection window as a small area with a size of 3 × 3 pixels, and for the central pixel in each small area (with the central pixel of the window as the threshold), compare the gray values of the adjacent 8 pixels with it. Comparison, if the surrounding pixel value is greater than the central pixel value, the position of the pixel is marked as 1, otherwise it is 0, so that the 8 points in the 3*3 neighborhood can be compared to generate an 8-bit binary number, that is, the window is obtained. LBP (Local Binary Pattern) mode value of the center pixel;
S3.2、计算每个小区域的直方图,得到每个LBP模式值出现的频率;S3.2. Calculate the histogram of each small area to obtain the frequency of occurrence of each LBP mode value;
S3.3、对每个小区域的直方图进行归一化处理;S3.3, normalize the histogram of each small area;
S3.4、将所有小区域的直方图连接起来,得到整个图像的LBP纹理特征。S3.4, connect the histograms of all small regions to obtain the LBP texture features of the entire image.
其中,所述步骤S4的具体步骤为:Wherein, the specific steps of the step S4 are:
S4.1、建立SVM模型,设置SVM的两个超参数C和γ,其中,C的取值为0.1、1和10,γ的取值为0.1,0.2,0.3;S4.1, establish the SVM model, set the two hyperparameters C and γ of the SVM, where the values of C are 0.1, 1 and 10, and the values of γ are 0.1, 0.2, 0.3;
S4.2、利用步骤S4.1中超参数的组合进行网格搜索,选择一个拟合最好的超平面系数;S4.2. Use the combination of hyperparameters in step S4.1 to perform grid search, and select a hyperplane coefficient that fits best;
S4.3、将将步骤S1中的训练集平均分成五份,轮流将五份中的一份作为验证集来测试模型准确率,然后将五次验证结果取平均值,作为SVM分类模型的验证集结果;S4.3. Divide the training set in step S1 into five parts on average, take one of the five parts as the verification set in turn to test the accuracy of the model, and then take the average of the five verification results as the verification of the SVM classification model set result;
S4.4、保存验证集最佳的SVM超参数模型。S4.4. Save the best SVM hyperparameter model for the validation set.
本发明上述技术方案的有益效果如下:The beneficial effects of the above-mentioned technical solutions of the present invention are as follows:
本发明采用一种基于全局Gabor滤波和局部LBP特征的喉癌细胞图像分类算法,结合全局Gabor滤波特征与局部LBP特征对荧光染色的喉癌细胞图像进行准确分类,兼具了全局和局部纹理特征提取算法的优势,能有效利用喉癌细胞数据的判别特征,从而实现细胞图像准确的分类。The invention adopts a laryngeal cancer cell image classification algorithm based on global Gabor filtering and local LBP features, and combines global Gabor filtering features and local LBP features to accurately classify the fluorescently dyed laryngeal cancer cell images, and has both global and local texture features. The advantages of the extraction algorithm can effectively use the discriminative features of laryngeal cancer cell data, so as to achieve accurate classification of cell images.
附图说明Description of drawings
图1为本发明流程框架图;Fig. 1 is a flow chart of the present invention;
图2为本发明中Gabor滤波核可视化图;Fig. 2 is the visualization diagram of Gabor filter kernel in the present invention;
图3为本发明中LBP算子计算示意图。FIG. 3 is a schematic diagram of LBP operator calculation in the present invention.
具体实施方式Detailed ways
为使本发明要解决的技术问题、技术方案和优点更加清楚,下面将结合附图及具体实施例进行详细描述。In order to make the technical problems, technical solutions and advantages to be solved by the present invention more clear, the following will be described in detail with reference to the accompanying drawings and specific embodiments.
如图1所示,本发明的实施例提供一种基于全局Gabor滤波和局部LBP特征喉癌细胞图像分类方法,包括以下步骤:As shown in FIG. 1, an embodiment of the present invention provides a method for classifying images of laryngeal cancer cells based on global Gabor filtering and local LBP features, including the following steps:
S1、获取喉癌细胞图像数据集,进行数据预处理;S1. Obtain an image data set of laryngeal cancer cells, and perform data preprocessing;
S2、提取图像全局特征信息;S2, extracting the global feature information of the image;
S3、提取图像局部特征信息;S3, extracting local feature information of the image;
S4、图像分类器训练;S4, image classifier training;
S5、测试图像标签预测,得到测试结果。S5, test image label prediction, and obtain a test result.
本实施例中,所述步骤S1的具体步骤为:In this embodiment, the specific steps of the step S1 are:
S1.1、随机打乱数据集合中元素顺序;S1.1. Randomly shuffle the order of elements in the data set;
S1.2、将全部数据集的80%元素抽取出来作为训练集,剩余20%数据元素作为测试集;S1.2. Extract 80% of the elements of the entire data set as the training set, and the remaining 20% of the data elements as the test set;
S1.3、将导入的喉癌细胞图像统一拉伸至50×50像素数位大小尺寸并归一化图像像素。S1.3, uniformly stretch the imported laryngeal cancer cell image to a digital size of 50×50 pixels and normalize the image pixels.
所述步骤S2的具体步骤为:The specific steps of the step S2 are:
S2.1、设置Gabor核为5种尺度和8种角度,5种尺度为16像素、32像素、64像素、128像素、256像素,8个角度方向为0度、45度、90度、135度、180度、225度、270度、315度,共40个Gabor滤波核;S2.1. Set the Gabor kernel to 5 scales and 8 angles, the 5 scales are 16 pixels, 32 pixels, 64 pixels, 128 pixels, 256 pixels, and the 8 angle directions are 0 degrees, 45 degrees, 90 degrees, 135 degrees, 180 degrees, 225 degrees, 270 degrees, 315 degrees, a total of 40 Gabor filter kernels;
S2.2、循环遍历步骤S2.1中设置的40个Gabor滤波核,将每个核与原始图像进行滤波运算得到40个滤波后图像;S2.2. Loop through the 40 Gabor filter kernels set in step S2.1, and perform a filtering operation on each kernel and the original image to obtain 40 filtered images;
S2.3、将滤波后Gabor图进行矩阵加得到一个50×50像素数位大小的Gabor全局特征矩阵。S2.3. Add the filtered Gabor map to a matrix to obtain a Gabor global feature matrix with a size of 50×50 pixels.
本发明中Gabor滤波核可视化图如图2所示。The visualization diagram of the Gabor filter kernel in the present invention is shown in FIG. 2 .
所述S3的具体步骤为:The specific steps of the S3 are:
S3.1、将检测窗口定为3×3像素数位大小的小区域,对于每个小区域中的中心像素(以窗口中心像素为阈值),将相邻的8个像素的灰度值与其进行比较,若周围像素值大于中心像素值,则该像素点的位置被标记为1,否则为0,这样,3*3邻域内的8个点经比较可产生8位二进制数,即得到该窗口中心像素点的LBP(Local Binary Pattern)模式值;S3.1. Set the detection window as a small area with a size of 3 × 3 pixels, and for the central pixel in each small area (with the central pixel of the window as the threshold), compare the gray values of the adjacent 8 pixels with it. Comparison, if the surrounding pixel value is greater than the central pixel value, the position of the pixel is marked as 1, otherwise it is 0, so that the 8 points in the 3*3 neighborhood can be compared to generate an 8-bit binary number, that is, the window is obtained. LBP (Local Binary Pattern) mode value of the center pixel;
S3.2、计算每个小区域的直方图,得到每个LBP模式值出现的频率;S3.2. Calculate the histogram of each small area to obtain the frequency of occurrence of each LBP mode value;
S3.3、对每个小区域的直方图进行归一化处理;S3.3, normalize the histogram of each small area;
S3.4、将所有小区域的直方图连接起来,得到整个图像的LBP纹理特征。S3.4, connect the histograms of all small regions to obtain the LBP texture features of the entire image.
本发明中LBP算子计算示意图如图3所示。The schematic diagram of LBP operator calculation in the present invention is shown in FIG. 3 .
所述步骤S4的具体步骤为:The specific steps of the step S4 are:
S4.1、建立SVM模型,设置SVM的两个超参数C和γ,其中,C的取值为0.1、1和10,γ的取值为0.1,0.2,0.3;S4.1, establish the SVM model, set the two hyperparameters C and γ of the SVM, where the values of C are 0.1, 1 and 10, and the values of γ are 0.1, 0.2, 0.3;
S4.2、利用步骤S4.1中超参数的组合进行网格搜索,选择一个拟合最好的超平面系数;S4.2. Use the combination of hyperparameters in step S4.1 to perform grid search, and select a hyperplane coefficient that fits best;
S4.3、将步骤S1中的训练集平均分成五份,轮流将五份中的一份作为验证集来测试模型准确率,然后将五次验证结果取平均值,作为SVM分类模型的验证集结果;S4.3. Divide the training set in step S1 into five parts on average, take one of the five parts as the verification set in turn to test the accuracy of the model, and then take the average of the five verification results as the verification set of the SVM classification model result;
S4.4、保存验证集最佳的SVM超参数模型。S4.4. Save the best SVM hyperparameter model for the validation set.
本发明用5个尺度和8个方向的Gabor滤波器对图像进行多尺度多方法滤波。Gabor滤波器只允许相应于其频率的图片纹理能够顺畅地通过,而其他纹理的能量会受到抑制,从而使其难以穿越,基于这一特点,可以将Gabor滤波器的频率对应图像的纹理频率,利用多尺度、多方向的Gabor滤波器滤出图像在不同尺度和方向上的全局纹理特征。先用提取40个Gabor核的不同特征,再用将所有特征进行矩阵加,达到特征选择的全局特征提取目的。The invention uses Gabor filters of 5 scales and 8 directions to perform multi-scale and multi-method filtering on the image. The Gabor filter only allows the image texture corresponding to its frequency to pass smoothly, while the energy of other textures will be suppressed, making it difficult to pass through. Based on this feature, the frequency of the Gabor filter can be corresponded to the texture frequency of the image, The multi-scale and multi-directional Gabor filter is used to filter out the global texture features of the image at different scales and directions. Firstly, the different features of 40 Gabor kernels are extracted, and then all the features are added by matrix to achieve the purpose of global feature extraction of feature selection.
另外,本发明采用LBP方法提取特征具有简单易算、灰度不变性和旋转不变性等显著优点。与其特征提取方法相比,用LBP提取出的局部特征,一定程度上消除了光照变化的问题、具有旋转不变性、纹理特征维度低,计算速度快等优势。此外,局部LBP与全局Gabor滤波相结合可以达到局部全局和特征全面提取的效果。In addition, the present invention adopts the LBP method to extract features, which has obvious advantages such as simple and easy calculation, grayscale invariance and rotation invariance. Compared with its feature extraction method, the local features extracted by LBP can eliminate the problem of illumination changes to a certain extent, and have the advantages of rotation invariance, low texture feature dimension, and fast calculation speed. In addition, the combination of local LBP and global Gabor filtering can achieve the effect of local global and comprehensive feature extraction.
以上所述是本发明的优选实施方式,应当指出,对于本技术领域的普通技术人员来说,在不脱离本发明所述原理的前提下,还可以作出若干改进和润饰,这些改进和润饰也应视为本发明的保护范围。The above are the preferred embodiments of the present invention. It should be pointed out that for those skilled in the art, without departing from the principles of the present invention, several improvements and modifications can be made. It should be regarded as the protection scope of the present invention.
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