[go: up one dir, main page]

CN114941023A - Droplet digital PCR oil phase composition, droplet digital PCR composition and its application and kit - Google Patents

Droplet digital PCR oil phase composition, droplet digital PCR composition and its application and kit Download PDF

Info

Publication number
CN114941023A
CN114941023A CN202210771786.1A CN202210771786A CN114941023A CN 114941023 A CN114941023 A CN 114941023A CN 202210771786 A CN202210771786 A CN 202210771786A CN 114941023 A CN114941023 A CN 114941023A
Authority
CN
China
Prior art keywords
digital pcr
concentration
composition
droplet
oil phase
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Pending
Application number
CN202210771786.1A
Other languages
Chinese (zh)
Inventor
周鑫鑫
沈敏杰
高琪
王虹军
陈芝娟
贺贤汉
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Hangzhou Bori Technology Co ltd
Original Assignee
Hangzhou Bori Technology Co ltd
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Hangzhou Bori Technology Co ltd filed Critical Hangzhou Bori Technology Co ltd
Priority to CN202210771786.1A priority Critical patent/CN114941023A/en
Publication of CN114941023A publication Critical patent/CN114941023A/en
Pending legal-status Critical Current

Links

Images

Classifications

    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6844Nucleic acid amplification reactions
    • C12Q1/6851Quantitative amplification

Landscapes

  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Organic Chemistry (AREA)
  • Engineering & Computer Science (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Health & Medical Sciences (AREA)
  • Biophysics (AREA)
  • Chemical Kinetics & Catalysis (AREA)
  • Immunology (AREA)
  • Microbiology (AREA)
  • Molecular Biology (AREA)
  • Analytical Chemistry (AREA)
  • Physics & Mathematics (AREA)
  • Biotechnology (AREA)
  • Biochemistry (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • General Health & Medical Sciences (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

本发明提供了一种微滴式数字PCR油相组合物、微滴式数字PCR组合物及其应用和试剂盒,涉及生物技术领域。本发明提供的微滴式数字PCR油相组合物,包括特定配比的氟化油和PFPE‑PEG‑PFPE,该油相组合物与水相形成的微滴大小均匀,稳定性好,对于PCR扩增的影响小,能够作为油相应用于微滴式数字PCR中。本发明提供的微滴式数字PCR组合物,包括上述微滴式数字PCR油相组合物和水相组合物,其中水相组合物含有特定浓度的热启动Taq酶、MgCl2、KCl、Tris‑HCl、BSA、dNTP、PEG2000、甜菜碱、DMSO、甘油、鱼精DNA和Proclin‑300,该组合物形成的液滴更稳定。

Figure 202210771786

The invention provides a microdroplet type digital PCR oil phase composition, a microdroplet type digital PCR composition and an application and a kit thereof, and relates to the field of biotechnology. The microdroplet digital PCR oil phase composition provided by the present invention includes fluorinated oil and PFPE-PEG-PFPE in a specific proportion, and the microdroplets formed by the oil phase composition and the water phase are uniform in size and have good stability, and are suitable for PCR The effect of amplification is small, and it can be used in droplet digital PCR as an oil phase. The droplet digital PCR composition provided by the present invention includes the above-mentioned droplet digital PCR oil phase composition and water phase composition, wherein the water phase composition contains a specific concentration of hot-start Taq enzyme, MgCl 2 , KCl, Tris- HCl, BSA, dNTP, PEG2000, betaine, DMSO, glycerol, protamine DNA, and Proclin‑300, the composition forms more stable droplets.

Figure 202210771786

Description

微滴式数字PCR油相组合物、微滴式数字PCR组合物及其应用 和试剂盒Droplet digital PCR oil phase composition, droplet digital PCR composition and its application and kit

技术领域technical field

本发明涉及生物技术领域,尤其是涉及一种微滴式数字PCR油相组合物、微滴式数字PCR组合物及其应用和试剂盒。The invention relates to the field of biotechnology, in particular to a droplet type digital PCR oil phase composition, a droplet type digital PCR composition and its application and kit.

背景技术Background technique

数字PCR即dPCR,通过对核酸模板进行一定的稀释后,将其随机分配到大量的反应单元中进行扩增反应,扩增结束后对每个反应单元的荧光信号进行采集,最后通过直接计数或泊松分布公式计算得到样品的原始浓度或含量的PCR技术。数字PCR技术提出至今,相关技术和产业化发展都非常迅速。迄今为止,数字PCR技术主要有三类:微反应室/孔板、大规模集成微流控芯片和液滴数字PCR系统。微滴式数字PCR具有荧光强度高易于检测,灵敏度高,针对传染性核酸病毒的快速灵敏检测对疫情的监测与控制意义重大。Digital PCR is dPCR. After a certain dilution of the nucleic acid template, it is randomly allocated to a large number of reaction units for amplification reaction. The Poisson distribution formula calculates the original concentration or content of the sample by PCR technology. Since the introduction of digital PCR technology, related technologies and industrialization have developed very rapidly. To date, there are three main categories of digital PCR technologies: micro-reaction chambers/well plates, large-scale integrated microfluidic chips, and droplet digital PCR systems. Droplet digital PCR has high fluorescence intensity, easy detection, and high sensitivity. The rapid and sensitive detection of infectious nucleic acid viruses is of great significance to the monitoring and control of epidemics.

微滴式数字PCR是油包水型液滴,关键的在于PCR扩增中维持油包水液滴的稳定性。在表面活性剂存在下的亚稳态状态,这本身是一个不符合热力学平衡的体系,因此在液滴数字化应用中,液滴存在聚结或者破裂的趋势。针对上述两种现象,通常的解决办法就是在油内添加表面活性剂,它通过两端不同的极性成分稳定在液滴的油水界面,平衡系统均质化的驱动力,使分散体稳定在亚稳态,确保液滴之间不易凝结。并且为了液滴能保证扩增的稳定性和储存稳定性,水相中往往也需要加入稳定剂,和油相中表面活性剂共同作用,维持液滴的稳定性。Droplet digital PCR is a water-in-oil droplet, and the key is to maintain the stability of the water-in-oil droplet during PCR amplification. The metastable state in the presence of surfactants is a system that does not conform to thermodynamic equilibrium. Therefore, in the application of droplet digitization, the droplets tend to coalesce or rupture. In view of the above two phenomena, the usual solution is to add surfactants in the oil, which stabilize the oil-water interface of the droplets through different polar components at both ends, balance the driving force of the homogenization of the system, and stabilize the dispersion in the The metastable state ensures that the droplets are not easily coagulated. And in order to ensure the stability of the amplification and storage stability of the droplets, it is often necessary to add a stabilizer to the water phase to act together with the surfactant in the oil phase to maintain the stability of the droplets.

有鉴于此,特提出本发明。In view of this, the present invention is proposed.

发明内容SUMMARY OF THE INVENTION

本发明的第一目的在于提供一种微滴式数字PCR油相组合物。The first objective of the present invention is to provide a droplet digital PCR oil phase composition.

本发明的第二目的在于提供一种微滴式数字PCR组合物,以该组合物制备得到的液滴更稳定。The second object of the present invention is to provide a droplet digital PCR composition, the droplets prepared with the composition are more stable.

本发明的第三目的在于提供上述微滴式数字PCR油相组合物或微滴式数字PCR组合物在微滴数字PCR中的应用。The third object of the present invention is to provide the above-mentioned droplet digital PCR oil phase composition or the application of the droplet digital PCR composition in droplet digital PCR.

本发明的第四目的在于提供一种微滴式数字PCR试剂盒。The fourth object of the present invention is to provide a droplet type digital PCR kit.

第一方面,本发明提供了一种微滴式数字PCR油相组合物,按质量份数计,包括:氟化油92-98份和PFPE-PEG-PFPE2-8份。In a first aspect, the present invention provides a droplet digital PCR oil phase composition, which, in parts by mass, comprises: 92-98 parts of fluorinated oil and 2-8 parts of PFPE-PEG-PFPE.

作为进一步技术方案,按质量份数计,包括:氟化油93-97份和 PFPE-PEG-PFPE 3-7份;As a further technical solution, in parts by mass, including: 93-97 parts of fluorinated oil and 3-7 parts of PFPE-PEG-PFPE;

优选地,按质量份数计,包括:氟化油95份和PFPE-PEG-PFPE 5份。Preferably, in parts by mass, it includes: 95 parts of fluorinated oil and 5 parts of PFPE-PEG-PFPE.

第二方面,本发明提供了一种微滴式数字PCR组合物,包括所述的微滴式数字PCR油相组合物和水相组合物;In a second aspect, the present invention provides a droplet digital PCR composition, including the droplet digital PCR oil phase composition and water phase composition;

所述水相组合物的溶质包括热启动Taq酶、MgCl2、KCl、Tris-HCl、 BSA、dNTP、PEG2000、甜菜碱、DMSO、甘油、鱼精DNA和Proclin-300;The solutes of the aqueous composition include hot-start Taq enzyme, MgCl 2 , KCl, Tris-HCl, BSA, dNTP, PEG2000, betaine, DMSO, glycerol, protamine DNA and Proclin-300;

所述水相组合物中,热启动Taq酶的浓度为0.08-0.12U/μL、MgCl2的浓度为3-4mM、KCl的浓度为100-150mM、Tris-HCl的浓度为16-24mM、 BSA的浓度为2-3mg/mL、dNTP的浓度为0.3-0.5mM、PEG2000的体积分数为0.6%-0.8%、甜菜碱的浓度为0.3-0.5M、DMSO的体积分数为 1.6%-2.4%、甘油的体积分数为0.2%-0.3%、鱼精DNA的浓度为 0.4-0.6ng/μL、Proclin-300的体积分数为0.03%-0.05%。In the aqueous phase composition, the concentration of hot-start Taq enzyme is 0.08-0.12 U/μL, the concentration of MgCl 2 is 3-4 mM, the concentration of KCl is 100-150 mM, the concentration of Tris-HCl is 16-24 mM, and the concentration of BSA The concentration of 2-3mg/mL, the concentration of dNTP is 0.3-0.5mM, the volume fraction of PEG2000 is 0.6%-0.8%, the concentration of betaine is 0.3-0.5M, the volume fraction of DMSO is 1.6%-2.4%, The volume fraction of glycerol was 0.2%-0.3%, the concentration of protamine DNA was 0.4-0.6 ng/μL, and the volume fraction of Proclin-300 was 0.03%-0.05%.

作为进一步技术方案,所述水相组合物中,热启动Taq酶的浓度为 0.1U/μL、MgCl2的浓度为3.5mM、KCl的浓度为125mM、Tris-HCl的浓度为20mM、BSA的浓度为2.5mg/mL、dNTP的浓度为0.4mM、PEG2000的体积分数为0.7%、甜菜碱的浓度为0.4M、DMSO的体积分数为2%、甘油的体积分数为0.25%、鱼精DNA的浓度为0.5ng/μL、Proclin-300体积分数为0.04%。As a further technical solution, in the aqueous phase composition, the concentration of hot-start Taq enzyme is 0.1 U/μL, the concentration of MgCl 2 is 3.5 mM, the concentration of KCl is 125 mM, the concentration of Tris-HCl is 20 mM, and the concentration of BSA is 20 mM. 2.5mg/mL, dNTP concentration of 0.4mM, PEG2000 volume fraction of 0.7%, betaine concentration of 0.4M, DMSO volume fraction of 2%, glycerol volume fraction of 0.25%, fish sperm DNA concentration It is 0.5ng/μL, and the volume fraction of Proclin-300 is 0.04%.

作为进一步技术方案,所述水相组合物的溶质还包括引物对、探针和荧光素钠盐。As a further technical solution, the solute of the aqueous composition further includes a primer pair, a probe and a fluorescein sodium salt.

作为进一步技术方案,所述引物对的浓度为600-1000nM,优选为 800nM;As a further technical solution, the concentration of the primer pair is 600-1000nM, preferably 800nM;

优选地,所述探针的浓度为160-240nM,优选为200nM;Preferably, the concentration of the probe is 160-240nM, preferably 200nM;

优选地,所述荧光素钠盐的浓度为80-120nM,优选为100nM。Preferably, the concentration of the fluorescein sodium salt is 80-120 nM, preferably 100 nM.

第三方面,本发明提供了所述的微滴式数字PCR油相组合物或者所述的微滴式数字PCR组合物在微滴式数字PCR中的应用。In a third aspect, the present invention provides the droplet digital PCR oil phase composition or the application of the droplet digital PCR composition in droplet digital PCR.

第四方面,本发明提供了一种微滴式数字PCR试剂盒,包括所述的微滴式数字PCR油相组合物或者所述的微滴式数字PCR组合物。In a fourth aspect, the present invention provides a droplet digital PCR kit, comprising the droplet digital PCR oil phase composition or the droplet digital PCR composition.

与现有技术相比,本发明具有如下有益效果:Compared with the prior art, the present invention has the following beneficial effects:

本发明提供的微滴式数字PCR油相组合物,包括特定配比的氟化油和 PFPE-PEG-PFPE,该油相组合物与水相形成的微滴大小均匀,稳定性好,对于PCR扩增的影响小,能够作为油相应用于微滴式数字PCR中。The microdroplet digital PCR oil phase composition provided by the present invention includes fluorinated oil and PFPE-PEG-PFPE in a specific proportion, and the microdroplets formed by the oil phase composition and the water phase are uniform in size and have good stability, and are suitable for PCR The effect of amplification is small, and it can be used in droplet digital PCR as an oil phase.

本发明提供的微滴式数字PCR组合物,包括上述微滴式数字PCR油相组合物和水相组合物,其中水相组合物含有特定浓度的热启动Taq酶、 MgCl2、KCl、Tris-HCl、BSA、dNTP、PEG2000、甜菜碱、DMSO、甘油、鱼精DNA和Proclin-300,该水相组合物和油相组合物存在配合作用,二者混合形成的油包水液滴更稳定,且用于PCR扩增的灵敏度高,特异性强,扩增效率高,适用于各种核酸的扩增。The droplet digital PCR composition provided by the present invention includes the above-mentioned droplet digital PCR oil phase composition and water phase composition, wherein the water phase composition contains a specific concentration of hot-start Taq enzyme, MgCl 2 , KCl, Tris- HCl, BSA, dNTP, PEG2000, betaine, DMSO, glycerol, protamine DNA and Proclin-300, the water-phase composition and the oil-phase composition have a cooperative effect, and the water-in-oil droplets formed by mixing the two are more stable, And the PCR amplification has high sensitivity, strong specificity and high amplification efficiency, and is suitable for the amplification of various nucleic acids.

附图说明Description of drawings

为了更清楚地说明本发明具体实施方式或现有技术中的技术方案,下面将对具体实施方式或现有技术描述中所需要使用的附图作简单地介绍,显而易见地,下面描述中的附图是本发明的一些实施方式,对于本领域普通技术人员来讲,在不付出创造性劳动的前提下,还可以根据这些附图获得其他的附图。In order to illustrate the specific embodiments of the present invention or the technical solutions in the prior art more clearly, the following briefly introduces the accompanying drawings that need to be used in the description of the specific embodiments or the prior art. Obviously, the accompanying drawings in the following description The drawings are some embodiments of the present invention. For those of ordinary skill in the art, other drawings can also be obtained based on these drawings without creative efforts.

图1为硅油生成的微滴;Fig. 1 is the droplet generated by silicone oil;

图2为矿物油生成的微滴;Figure 2 is a droplet generated by mineral oil;

图3为氟化油生成的微滴;Fig. 3 is the droplet that fluorinated oil generates;

图4为对比例1提供的油相组合物生成的微滴;Fig. 4 is the droplet generated by the oil phase composition provided by Comparative Example 1;

图5为对比例2提供的油相组合物生成的微滴;Fig. 5 is the droplet generated by the oil phase composition provided by Comparative Example 2;

图6为对比例3提供的油相组合物生成的微滴;Figure 6 is the droplet generated by the oil phase composition provided by Comparative Example 3;

图7为对比例4提供的油相组合物生成的微滴;Figure 7 is the droplet generated by the oil phase composition provided by Comparative Example 4;

图8为对比例5提供的油相组合物生成的微滴;Figure 8 is the droplet generated by the oil phase composition provided by Comparative Example 5;

图9为实施例1提供的油相组合物生成的微滴;Figure 9 is the droplet generated by the oil phase composition provided in Example 1;

图10为实施例2提供的油相组合物生成的微滴;Figure 10 is the droplet generated by the oil phase composition provided in Example 2;

图11为实施例3提供的油相组合物生成的微滴;Figure 11 is the droplet generated by the oil phase composition provided in Example 3;

图12为利用实施例5配制的油相和水相生成微滴经过PCR扩增之后的荧光图片;Figure 12 is a fluorescence picture after PCR amplification of microdroplets prepared by using the oil phase and water phase prepared in Example 5;

图13为利用实施例6配制的油相和水相生成微滴经过PCR扩增之后的荧光图片;Figure 13 is a fluorescence picture after PCR amplification of microdroplets prepared by using the oil phase and water phase prepared in Example 6;

图14为利用实施例4配制的油相和水相生成微滴经过PCR扩增之后的荧光图片;Figure 14 is a fluorescence picture after PCR amplification of microdroplets prepared by using the oil phase and water phase prepared in Example 4;

图15为利用实施例4配制的油相和水相生成微滴经过PCR扩增之后放置7天的荧光图片;Fig. 15 is the fluorescence picture that utilizes the oil phase and the water phase prepared by Example 4 to generate microdroplets after PCR amplification and place them for 7 days;

图16为利用对比例6配制的油相和水相生成微滴经过PCR扩增之后的荧光图片;16 is a fluorescence picture after PCR amplification of microdroplets prepared by using the oil phase and water phase prepared in Comparative Example 6;

图17为利用对比例7配制的油相和水相生成微滴经过PCR扩增之后的荧光图片;Figure 17 is a fluorescence picture after PCR amplification of microdroplets prepared by using the oil phase and water phase prepared in Comparative Example 7;

图18为利用对比例8配制的油相和水相生成微滴经过PCR扩增之后的荧光图片。FIG. 18 is a fluorescent picture after PCR amplification of microdroplets prepared by using the oil phase and the water phase prepared in Comparative Example 8. FIG.

具体实施方式Detailed ways

下面将结合实施方式和实施例对本发明的实施方案进行详细描述,但是本领域技术人员将会理解,下列实施方式和实施例仅用于说明本发明,而不应视为限制本发明的范围。基于本发明中的实施例,本领域普通技术人员在没有做出创造性劳动前提下所获得的所有其他实施例,都属于本发明保护的范围。未注明具体条件者,按照常规条件或制造商建议的条件进行。所用试剂或仪器未注明生产厂商者,均为可以通过市售购买获得的常规产品。The embodiments of the present invention will be described in detail below in conjunction with the embodiments and examples, but those skilled in the art will understand that the following embodiments and examples are only used to illustrate the present invention, and should not be regarded as limiting the scope of the present invention. Based on the embodiments of the present invention, all other embodiments obtained by those of ordinary skill in the art without creative efforts shall fall within the protection scope of the present invention. If no specific conditions are specified, follow the general conditions or the conditions suggested by the manufacturer. The reagents or instruments used without the manufacturer's indication are conventional products that can be purchased from the market.

第一方面,本发明提供了一种微滴式数字PCR油相组合物,按质量份数计,包括:氟化油92-98份和PFPE-PEG-PFPE 2-8份。In a first aspect, the present invention provides a droplet digital PCR oil phase composition, which, in parts by mass, comprises: 92-98 parts of fluorinated oil and 2-8 parts of PFPE-PEG-PFPE.

本发明中,氟化油的质量份数例如可以为,但不限于92份、93份、94 份、95份、96份、97份或98份;PFPE-PEG-PFPE的质量份数例如可以为,但不限于2份、3份、4份、5份、6份、7份或8份。In the present invention, the mass fraction of fluorinated oil can be, for example, but not limited to 92 parts, 93 parts, 94 parts, 95 parts, 96 parts, 97 parts or 98 parts; the mass fraction of PFPE-PEG-PFPE can be, for example, For, but not limited to, 2, 3, 4, 5, 6, 7, or 8 servings.

经发明人研究发现,包括特定配比的氟化油和PFPE-PEG-PFPE的油相组合物与水相形成的微滴大小均匀,稳定性好,对于PCR扩增的影响小,能够作为油相应用于微滴式数字PCR中。The inventors have found that the droplets formed by the oil phase composition comprising a specific ratio of fluorinated oil and PFPE-PEG-PFPE and the water phase are uniform in size, have good stability, and have little impact on PCR amplification, and can be used as oil. Correspondingly used in droplet digital PCR.

在一些优选的实施方式中,按质量份数计,包括:氟化油93-97份和 PFPE-PEG-PFPE 3-7份;In some preferred embodiments, in parts by mass, including: 93-97 parts of fluorinated oil and 3-7 parts of PFPE-PEG-PFPE;

优选地,按质量份数计,包括:氟化油95份和PFPE-PEG-PFPE 5份。Preferably, in parts by mass, it includes: 95 parts of fluorinated oil and 5 parts of PFPE-PEG-PFPE.

通过对微滴式数字PCR油相组合物中各个组分配比的进一步优化和调整,使得该油相组合与水相混合制备得到的微滴的大小更加均匀,稳定性更好。By further optimizing and adjusting the distribution ratio of each component in the oil phase composition of the microdroplet digital PCR, the size of the microdroplets prepared by mixing the oil phase combination with the water phase is more uniform and the stability is better.

第二方面,本发明提供了一种微滴式数字PCR组合物,包括所述的微滴式数字PCR油相组合物和水相组合物;In a second aspect, the present invention provides a droplet digital PCR composition, including the droplet digital PCR oil phase composition and water phase composition;

所述水相组合物的溶质包括热启动Taq酶、MgCl2、KCl、Tris-HCl、 BSA、dNTP、PEG2000、甜菜碱、DMSO、甘油、鱼精DNA和Proclin-300。The solutes of the aqueous composition include hot-start Taq enzyme, MgCl2 , KCl, Tris-HCl, BSA, dNTPs, PEG2000, betaine, DMSO, glycerol, protamine DNA and Proclin-300.

所述水相组合物中,热启动Taq酶的浓度例如可以为,但不限于0.08U/μL、0.09U/μL、0.10U/μL、0.11U/μL或0.12U/μL;MgCl2的浓度例如可以为,但不限于3mM、3.2mM、3.4mM、3.6mM、3.8mM或4mM; KCl的浓度例如可以为,但不限于100mM、110mM、120mM、130mM、140mM或150mM;Tris-HCl的浓度例如可以为,但不限于16mM、18mM、20mM、 22mM或24mM;BSA的浓度例如可以为,但不限于2mg/mL、2.2mg/mL、 2.4mg/mL、2.6mg/mL、2.8mg/mL或3mg/mL。dNTP的浓度例如可以为,但不限于0.3mM、0.34mM、0.38mM、0.42mM、0.46mM或0.5mM;PEG2000 的体积分数例如可以为,但不限于0.6%、0.64%、0.68%、0.72%、0.76%或 0.8%;甜菜碱的浓度例如可以为,但不限于0.3M、0.34M、0.38M、0.42M、 0.46M或0.5M;DMSO的浓体积分数如可以为,但不限于1.6%、1.8%、2.0%、 2.2%或2.4%;甘油的体积分数例如可以为,但不限于0.2%、0.22%、0.24%、 0.26%、0.28%、或0.3%;鱼精DNA的浓度例如可以为,但不限于0.4ng/μL、 0.44ng/μL、0.48ng/μL、0.52ng/μL、0.56ng/μL或0.6ng/μL;Proclin-300的体积分数例如可以为,但不限于0.03%、0.035%、0.04%、0.045%或0.05%。In the aqueous phase composition, the concentration of the hot-start Taq enzyme can be, for example, but not limited to, 0.08U/μL, 0.09U/μL, 0.10U/μL, 0.11U/μL or 0.12U/μL; the concentration of MgCl 2 For example, it can be, but not limited to, 3mM, 3.2mM, 3.4mM, 3.6mM, 3.8mM or 4mM; the concentration of KCl can be, for example, but not limited to, 100mM, 110mM, 120mM, 130mM, 140mM or 150mM; the concentration of Tris-HCl For example, it can be, but not limited to, 16mM, 18mM, 20mM, 22mM or 24mM; the concentration of BSA can be, for example, but not limited to, 2mg/mL, 2.2mg/mL, 2.4mg/mL, 2.6mg/mL, 2.8mg/mL or 3mg/mL. The concentration of dNTP can be, for example, but not limited to, 0.3 mM, 0.34 mM, 0.38 mM, 0.42 mM, 0.46 mM or 0.5 mM; the volume fraction of PEG2000 can be, for example, but not limited to, 0.6%, 0.64%, 0.68%, 0.72% , 0.76% or 0.8%; the concentration of betaine can be, for example, but not limited to, 0.3M, 0.34M, 0.38M, 0.42M, 0.46M or 0.5M; the concentration volume fraction of DMSO can be, but not limited to, 1.6% , 1.8%, 2.0%, 2.2% or 2.4%; the volume fraction of glycerol can be, for example, but not limited to, 0.2%, 0.22%, 0.24%, 0.26%, 0.28%, or 0.3%; the concentration of fish sperm DNA, for example, can be is, but not limited to, 0.4ng/μL, 0.44ng/μL, 0.48ng/μL, 0.52ng/μL, 0.56ng/μL or 0.6ng/μL; the volume fraction of Proclin-300 can be, for example, but not limited to 0.03% , 0.035%, 0.04%, 0.045% or 0.05%.

本发明提供的微滴式数字PCR组合物,包括上述微滴式数字PCR油相组合物和水相组合物,其中水相组合物含有特定浓度的热启动Taq酶、 MgCl2、KCl、Tris-HCl、BSA、dNTP、PEG2000、甜菜碱、DMSO、甘油、鱼精DNA和Proclin-300,该微滴式数字PCR组合物形成的油包水液滴更稳定,且用于PCR扩增的灵敏度高,特异性强,扩增效率高,适用于各种核酸的扩增。The droplet digital PCR composition provided by the present invention includes the above-mentioned droplet digital PCR oil phase composition and water phase composition, wherein the water phase composition contains a specific concentration of hot-start Taq enzyme, MgCl 2 , KCl, Tris- HCl, BSA, dNTP, PEG2000, betaine, DMSO, glycerol, protamine DNA and Proclin-300, the droplet digital PCR composition forms water-in-oil droplets that are more stable and have high sensitivity for PCR amplification , strong specificity, high amplification efficiency, suitable for the amplification of various nucleic acids.

在一些优选的实施方式中,所述水相组合物中,热启动Taq酶的浓度为0.1U/μL、MgCl2的浓度为3.5mM、KCl的浓度为75mM、Tris-HCl的浓度为20mM、BSA的浓度为2.5mg/mL、dNTP的浓度为0.4mM、PEG2000 的体积分数为0.7%、甜菜碱的浓度为0.4M、DMSO的体积分数为2%、甘油的体积分数为0.5%、鱼精DNA的浓度为0.5ng/μL、Proclin-300的体积分数为0.04%。In some preferred embodiments, in the aqueous composition, the concentration of hot-start Taq enzyme is 0.1 U/μL, the concentration of MgCl 2 is 3.5 mM, the concentration of KCl is 75 mM, the concentration of Tris-HCl is 20 mM, The concentration of BSA was 2.5mg/mL, the concentration of dNTP was 0.4mM, the volume fraction of PEG2000 was 0.7%, the concentration of betaine was 0.4M, the volume fraction of DMSO was 2%, the volume fraction of glycerol was 0.5%, and the The concentration of DNA was 0.5 ng/μL, and the volume fraction of Proclin-300 was 0.04%.

通过对微滴式数字PCR组合物中水相组合物组分浓度的进一步优化和调整,使得该组合物制备得到的微滴的稳定性更好,提高核酸扩增的特异性、灵敏度和扩增效率。By further optimizing and adjusting the concentration of the water-phase composition components in the microdroplet digital PCR composition, the stability of the microdroplets prepared by the composition is better, and the specificity, sensitivity and amplification of nucleic acid amplification are improved. efficiency.

在一些优选的实施方式中,所述水相组合物的溶质还包括引物对、探针和荧光素钠盐,从而实现对目的核酸的检测或定量。In some preferred embodiments, the solute of the aqueous composition further includes a primer pair, a probe and fluorescein sodium salt, so as to realize the detection or quantification of the target nucleic acid.

在一些优选的实施方式中,引物对的浓度例如可以为,但不限于 600nM、700nM、800nM、900nM或1000nM,优选为800nM;所述探针的浓度例如可以为,但不限于160nM、180nM、200nM、220nM或240nM,优选为200nM;所述荧光素钠盐的浓度例如可以为,但不限于80nM、90nM、 100nM、110nM或120nM,优选为100nM。In some preferred embodiments, the concentration of the primer pair can be, for example, but not limited to, 600nM, 700nM, 800nM, 900nM or 1000nM, preferably 800nM; the concentration of the probe can be, for example, but not limited to 160nM, 180nM, 200nM, 220nM or 240nM, preferably 200nM; the concentration of the fluorescein sodium salt can be, for example, but not limited to, 80nM, 90nM, 100nM, 110nM or 120nM, preferably 100nM.

第三方面,本发明提供了所述的微滴式数字PCR油相组合物或者所述的微滴式数字PCR组合物在微滴式数字PCR中的应用。In a third aspect, the present invention provides the droplet digital PCR oil phase composition or the application of the droplet digital PCR composition in droplet digital PCR.

本发明提供的微滴式数字PCR油相组合物能够与水相形成大小均匀、稳定性好的微滴,该微滴对于PCR扩增的影响小;本发明提供的微滴式数字PCR组合物,包括特定组分的油相组合物和水相组合物,通过二者的协同配合作用,制备得到的油包水液滴更稳定,且用于PCR扩增的灵敏度高,特异性强,扩增效率高。因此,本发明提供的微滴式数字PCR油相组合物和微滴式数字PCR组合物均能够应用于微滴式数字PCR中。The droplet digital PCR oil phase composition provided by the present invention can form droplets with uniform size and good stability with the water phase, and the droplets have little influence on PCR amplification; the droplet digital PCR composition provided by the present invention , including the oil phase composition and the water phase composition of specific components, through the synergistic effect of the two, the prepared water-in-oil droplets are more stable, and have high sensitivity and specificity for PCR amplification. High efficiency. Therefore, both the oil phase composition of droplet type digital PCR and the composition of droplet type digital PCR provided by the present invention can be applied to the droplet type digital PCR.

第四方面,本发明提供了一种微滴式数字PCR试剂盒,包括所述的微滴式数字PCR油相组合物或者所述的微滴式数字PCR组合物。In a fourth aspect, the present invention provides a droplet digital PCR kit, comprising the droplet digital PCR oil phase composition or the droplet digital PCR composition.

该试剂盒适用于各种核酸的扩增,且PCR扩增的灵敏度高,特异性强,扩增效率好。The kit is suitable for the amplification of various nucleic acids, and the PCR amplification has high sensitivity, strong specificity and good amplification efficiency.

下面通过具体的实施例和对比例进一步说明本发明,但是,应当理解为,这些实施例仅仅是用于更详细地说明之用,而不应理解为用于以任何形式限制本发明。The present invention is further described below through specific examples and comparative examples, however, it should be understood that these examples are only used for more detailed description, and should not be construed to limit the present invention in any form.

需要说明的是,以下实施例或者试验例中所用到的引物对、探针及质粒模板的目的片段如下,其中质粒为pUC57。It should be noted that the target fragments of primer pairs, probes and plasmid templates used in the following examples or test examples are as follows, wherein the plasmid is pUC57.

Figure BDA0003724443980000081
Figure BDA0003724443980000081

实施例1Example 1

一种微滴式数字PCR油相组合物,按质量份数计,包括氟化油95份和双子表面活性剂5份。A droplet type digital PCR oil phase composition, calculated in parts by mass, comprises 95 parts of fluorinated oil and 5 parts of gemini surfactant.

其中双子表面活性剂为PFPE-PEG-PFPE。The gemini surfactant is PFPE-PEG-PFPE.

实施例2Example 2

一种微滴式数字PCR油相组合物,按质量份数计,包括氟化油92份和双子表面活性剂8份。A droplet type digital PCR oil phase composition, in parts by mass, comprises 92 parts of fluorinated oil and 8 parts of gemini surfactant.

其中双子表面活性剂为PFPE-PEG-PFPE。The gemini surfactant is PFPE-PEG-PFPE.

实施例3Example 3

一种微滴式数字PCR油相组合物,按质量份数计,包括氟化油98份和双子表面活性剂2份。A microdroplet digital PCR oil phase composition, calculated in parts by mass, comprises 98 parts of fluorinated oil and 2 parts of gemini surfactant.

其中双子表面活性剂为PFPE-PEG-PFPE。The gemini surfactant is PFPE-PEG-PFPE.

对比例1Comparative Example 1

一种微滴式数字PCR油相组合物,按质量份数计,包括氟化油95份和离子型表面活性剂5份。A microdroplet digital PCR oil phase composition, in parts by mass, comprises 95 parts of fluorinated oil and 5 parts of ionic surfactant.

其中离子型表面活性剂为十二烷基二甲基羧基甜菜碱。The ionic surfactant is dodecyldimethylcarboxybetaine.

对比例2Comparative Example 2

一种微滴式数字PCR油相组合物,按质量份数计,包括氟化油95份和离子型表面活性剂5份。A microdroplet digital PCR oil phase composition, in parts by mass, comprises 95 parts of fluorinated oil and 5 parts of ionic surfactant.

其中离子型表面活性剂为十二烷基二甲基溴化铵。The ionic surfactant is dodecyl dimethyl ammonium bromide.

对比例3Comparative Example 3

一种微滴式数字PCR油相组合物,按质量份数计,包括氟化油95份和非离子型表面活性剂5份。A droplet type digital PCR oil phase composition, in parts by mass, comprises 95 parts of fluorinated oil and 5 parts of nonionic surfactant.

其中非离子型表面活性剂为Abil EM-90。The nonionic surfactant is Abil EM-90.

对比例4Comparative Example 4

一种微滴式数字PCR油相组合物,按质量份数计,包括氟化油95份和非离子型表面活性剂5份。A droplet type digital PCR oil phase composition, in parts by mass, comprises 95 parts of fluorinated oil and 5 parts of nonionic surfactant.

其中非离子型表面活性剂为Span80。Among them, the nonionic surfactant is Span80.

对比例5Comparative Example 5

一种微滴式数字PCR油相组合物,与实施例1的区别在于,氟化油85 份和双子表面活性剂15份。A droplet digital PCR oil phase composition, the difference from Example 1 is that it contains 85 parts of fluorinated oil and 15 parts of gemini surfactant.

实施例4Example 4

一种微滴式数字PCR组合物,包括实施例1的油相组合物和水相,水相组成如表1所示。A droplet digital PCR composition, comprising the oil phase composition of Example 1 and a water phase, the water phase composition is shown in Table 1.

表1Table 1

Figure BDA0003724443980000091
Figure BDA0003724443980000091

Figure BDA0003724443980000101
Figure BDA0003724443980000101

实施例5Example 5

一种微滴式数字PCR组合物,包括实施例1的油相组合物和水相,水相组成如表2所示。A droplet type digital PCR composition includes the oil phase composition of Example 1 and an aqueous phase, and the aqueous phase composition is shown in Table 2.

表2Table 2

Figure BDA0003724443980000102
Figure BDA0003724443980000102

Figure BDA0003724443980000111
Figure BDA0003724443980000111

实施例6Example 6

一种微滴式数字PCR组合物,包括实施例1的油相组合物和水相,水相组成如表3所示。A droplet type digital PCR composition includes the oil phase composition of Example 1 and an aqueous phase, and the aqueous phase composition is shown in Table 3.

表3table 3

组分component 终浓度Final concentration MgCl<sub>2</sub>MgCl<sub>2</sub> 3mM3mM KClKCl 150mM150mM Tris-HClTris-HCl 16mM16mM BSABSA 3mg/mL3mg/mL dNTPdNTPs 0.3mM0.3mM 甘油glycerin 0.3%0.3% 甜菜碱betaine 0.3M0.3M PEG2000PEG2000 0.8%0.8% DMSODMSO 1.6%1.6% 鱼精DNAFish sperm DNA 0.6ng/μL0.6ng/μL Proclin-300Proclin-300 0.05%0.05% 热启动Taq酶Hot start Taq enzyme 2U/反应2U/reaction 引物FPrimer F 1000nM1000nM 引物RPrimer R 1000nM1000nM 探针PProbe P 160nM160nM 质粒模板Plasmid template 5μL/反应5μL/reaction 荧光素钠盐Fluorescein sodium salt 120nM120nM 无核酸酶水Nuclease-free water 补足至25μL Make up to 25 μL

对比例6Comparative Example 6

一种微滴式数字PCR组合物,包括实施例1的油相组合物和水相,水相组成如表3所示。A droplet type digital PCR composition includes the oil phase composition of Example 1 and an aqueous phase, and the aqueous phase composition is shown in Table 3.

表4Table 4

组分component 终浓度Final concentration MgCl<sub>2</sub>MgCl<sub>2</sub> 1mM1mM KClKCl 200mM200mM Tris-HClTris-HCl 10mM10mM BSABSA 6mg/mL6mg/mL dNTPdNTPs 0.4mM0.4mM 甘油glycerin 0.8%0.8% 甜菜碱betaine 0.8M0.8M PEG2000PEG2000 0.3%0.3% DMSODMSO 3%3% 鱼精DNAFish sperm DNA 0.8ng/μL0.8ng/μL Proclin-300Proclin-300 0.04%0.04% 热启动Taq酶Hot start Taq enzyme 2.5U/反应2.5U/reaction 引物FPrimer F 800nM800nM 引物RPrimer R 800nM800nM 探针PProbe P 200nM200nM 质粒模板Plasmid template 5μL/反应5μL/reaction 荧光素钠盐Fluorescein sodium salt 100nM100nM 无核酸酶水Nuclease-free water 补足至25μL Make up to 25 μL

对比例7Comparative Example 7

一种微滴式数字PCR组合物,与实施例4的区别在于,水相中不包括甜菜碱。A droplet digital PCR composition, the difference from Example 4 is that betaine is not included in the aqueous phase.

对比例8Comparative Example 8

一种微滴式数字PCR组合物,与实施例4的区别在于,水相中不包括 PEG2000。A droplet digital PCR composition, the difference from Example 4 is that PEG2000 is not included in the aqueous phase.

试验例1Test Example 1

发明人分别以硅油,矿物油和氟化油作为油相,分别与水相(水相中,热启动Taq酶浓度为0.1U/μL、MgCl2浓度为3mM、KCl浓度为75mM、 Tris-HCl浓度为20mM、BSA浓度为0.5mg/mL、dNTP浓度为0.2mM、DMSO 体积分数为1%)制备微滴,微滴的制备方法如下:The inventors used silicone oil, mineral oil and fluorinated oil as the oil phase, respectively, and the water phase (in the water phase, the hot-start Taq enzyme concentration was 0.1 U/μL, the MgCl concentration was 3 mM, the KCl concentration was 75 mM, and the Tris-HCl concentration was 0.1 U/μL). The concentration of 20 mM, the concentration of BSA is 0.5 mg/mL, the concentration of dNTP is 0.2 mM, and the volume fraction of DMSO is 1%) to prepare droplets. The preparation method of the droplets is as follows:

先将20μL油相加入到芯片中,1200rpm,1min离心,随后将10μL水相加入到芯片中,1200rpm,1min离心。First, 20 μL of the oil phase was added to the chip, centrifuged at 1200 rpm for 1 min, and then 10 μL of the aqueous phase was added to the chip, and centrifuged at 1200 rpm for 1 min.

结果如图1、图2和图3所示。从图中可以看出,使用氟化油会比使用硅油或者矿物油液滴稳定,破裂和融合少,以氟化油作为油相与水相制备得到的微滴大小更加均匀,因此初步选择氟化油作为微滴式数字PCR的油相。The results are shown in Figures 1, 2 and 3. It can be seen from the figure that the use of fluorinated oil is more stable than the use of silicone oil or mineral oil droplets, with less rupture and fusion, and the size of the droplets prepared by using fluorinated oil as the oil phase and the water phase is more uniform, so fluorine is initially selected. The carburetor serves as the oil phase for droplet digital PCR.

试验例2Test Example 2

油确定后,从离子型表面活性剂、非离子型表面活性剂和双子表面活性剂中对适用于微滴式数字PCR用表面活性剂进行筛选。其中,油相的制备方法为:将表面活性剂溶解于氟化油中摇匀,使其充分溶解混匀。After the oil was identified, the surfactants suitable for use in droplet digital PCR were screened from ionic surfactants, nonionic surfactants and gemini surfactants. Wherein, the preparation method of the oil phase is as follows: the surfactant is dissolved in the fluorinated oil and shaken, so that it is fully dissolved and mixed.

分别以实施例1-3和对比例1-5提供的油相组合物作为油相,按照试验例1的方法与水相(水相与试验例1相同)混合制备微滴,结果如图4-图 11所示。The oil phase compositions provided in Examples 1-3 and Comparative Examples 1-5 were used as the oil phase, and the microdroplets were prepared by mixing with the water phase (the water phase was the same as in Test Example 1) according to the method of Test Example 1. The results are shown in Figure 4 - As shown in Figure 11.

从图中可以看出,使用双子表面活性剂PFPE-PEG-PFPE会比使用离子型表面活性剂或者非离子型表面活性剂液滴更稳定,破裂和融合更少。进行浓度优化发现氟化油95份和双子表面活性剂5份,即可生成稳定均一的液滴。As can be seen from the figure, the use of the gemini surfactant PFPE-PEG-PFPE is more stable than the use of ionic or nonionic surfactant droplets, with less breakup and fusion. Concentration optimization found that 95 parts of fluorinated oil and 5 parts of gemini surfactant can generate stable and uniform droplets.

试验例3Test Example 3

分别以实施例4-6和对比例6-8提供的组合物进行微滴式数字PCR,步骤如下:Droplet digital PCR was carried out with the compositions provided in Examples 4-6 and Comparative Examples 6-8, and the steps were as follows:

PCR预混液:包括热启动Taq酶、MgCl2、KCl、Tris-HCl、BSA、dNTP、 PEG2000、甜菜碱、DMSO、甘油、鱼精DNA、Proclin-300。PCR master mix: including hot-start Taq enzyme, MgCl 2 , KCl, Tris-HCl, BSA, dNTP, PEG2000, betaine, DMSO, glycerol, protamine DNA, Proclin-300.

水相配制:在PCR预混液中加入质粒模板、引物对和探针。Aqueous phase preparation: Add plasmid template, primer pair and probe to PCR master mix.

先将20μL油相加入到芯片中,1200rpm,1min离心,随后将10μL水相加入到芯片中,1200rpm,1min离心。加样孔用透气膜封住。First, 20 μL of the oil phase was added to the chip, centrifuged at 1200 rpm for 1 min, and then 10 μL of the aqueous phase was added to the chip, and centrifuged at 1200 rpm for 1 min. The sample hole is sealed with a breathable film.

将生成微滴的芯片放入PCR仪中进行扩增。The microdroplet-generating chip is placed in a PCR machine for amplification.

Figure BDA0003724443980000141
Figure BDA0003724443980000141

使用芯片读取仪对扩增反应后的芯片进行读取和拍照。结果如图12- 图18所示。Use a chip reader to read and photograph the chip after the amplification reaction. The results are shown in Figures 12-18.

从图中可以看出,相较于实施例4提供的组合物,对比例7和对比例8 提供的组合物制备得到的微滴大小不均匀,液滴发生大面积破裂或者融合现象,说明甜菜碱和PEG2000与本发明其他水相组分存在配合作用,有助于制备得到大小均一稳定的微滴;相较于对比例6,本发明经过优化后的 PCR预混液与油相更适配,液滴均一性好,液滴稳定,扩增准确,扩增效率高。It can be seen from the figure that, compared with the composition provided in Example 4, the size of the microdroplets prepared by the compositions provided in Comparative Examples 7 and 8 is not uniform, and the droplets are ruptured or fused in a large area, indicating that the sugar beet Alkali and PEG2000 cooperate with other water phase components of the present invention, which helps to prepare droplets of uniform and stable size; compared with Comparative Example 6, the optimized PCR premix of the present invention is more suitable for the oil phase, The droplet uniformity is good, the droplet is stable, the amplification is accurate, and the amplification efficiency is high.

最后应说明的是:以上各实施例仅用以说明本发明的技术方案,而非对其限制;尽管参照前述各实施例对本发明进行了详细的说明,本领域的普通技术人员应当理解:其依然可以对前述各实施例所记载的技术方案进行修改,或者对其中部分或者全部技术特征进行等同替换;而这些修改或者替换,并不使相应技术方案的本质脱离本发明各实施例技术方案的范围。Finally, it should be noted that the above embodiments are only used to illustrate the technical solutions of the present invention, but not to limit them; although the present invention has been described in detail with reference to the foregoing embodiments, those of ordinary skill in the art should understand that: The technical solutions described in the foregoing embodiments can still be modified, or some or all of the technical features thereof can be equivalently replaced; and these modifications or replacements do not make the essence of the corresponding technical solutions deviate from the technical solutions of the embodiments of the present invention. scope.

SEQUENCE LISTINGSEQUENCE LISTING

<110> 杭州博日科技股份有限公司<110> Hangzhou Bioer Technology Co., Ltd.

<120> 微滴式数字PCR油相组合物、微滴式数字PCR组合物及其应用和试剂盒<120> Droplet digital PCR oil phase composition, droplet digital PCR composition and its application and kit

<160> 4<160> 4

<170> PatentIn version 3.5<170> PatentIn version 3.5

<210> 1<210> 1

<211> 210<211> 210

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 1<400> 1

tcaaggcaaa ataattgacc aaacagatgt cagctttagt ggaggacata ttgaggaatg 60tcaaggcaaa ataattgacc aaacagatgt cagctttagt ggaggacata ttgaggaatg 60

ttcttgttat ccaaatgatg gtaaagtgga atgcgtgtgt agagacaact ggacgggaac 120ttcttgttat ccaaatgatg gtaaagtgga atgcgtgtgt agagacaact ggacgggaac 120

taacaggcct gtgctagtta tttcgcctga tctctcttac agggttgggt atttatgtgc 180taacaggcct gtgctagtta tttcgcctga tctctcttac agggttgggt atttatgtgc 180

aggattgccc agtgacactc caagagggga 210aggattgccc agtgacactc caagagggga 210

<210> 2<210> 2

<211> 23<211> 23

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 2<400> 2

atcaggcgaa ataactagca cag 23atcaggcgaa ataactagca cag 23

<210> 3<210> 3

<211> 23<211> 23

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 3<400> 3

gctttagtgg aggacatatt gag 23gctttagtgg aggacatatt gag 23

<210> 4<210> 4

<211> 27<211> 27

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 4<400> 4

ccagttgtct ctacacacgc attccac 27ccagttgtct ctacacacgc attccac 27

Claims (10)

1.一种微滴式数字PCR油相组合物,其特征在于,按质量份数计,包括:氟化油92-98份和PFPE-PEG-PFPE 2-8份。1. A droplet type digital PCR oil phase composition, characterized in that, in parts by mass, comprising: 92-98 parts of fluorinated oil and 2-8 parts of PFPE-PEG-PFPE. 2.根据权利要求1所述的微滴式数字PCR油相组合物,其特征在于,按质量份数计,包括:氟化油93-97份和PFPE-PEG-PFPE 3-7份;2. droplet type digital PCR oil phase composition according to claim 1, is characterized in that, by mass fraction, comprises: 93-97 parts of fluorinated oil and 3-7 parts of PFPE-PEG-PFPE; 优选地,按质量份数计,包括:氟化油95份和PFPE-PEG-PFPE 5份。Preferably, in parts by mass, it includes: 95 parts of fluorinated oil and 5 parts of PFPE-PEG-PFPE. 3.一种微滴式数字PCR组合物,其特征在于,包括权利要求1或2所述的微滴式数字PCR油相组合物和水相组合物;3. A droplet type digital PCR composition, characterized in that, comprising the droplet type digital PCR oil phase composition and the water phase composition according to claim 1 or 2; 所述水相组合物的溶质包括热启动Taq酶、MgCl2、KCl、Tris-HCl、BSA、dNTP、PEG2000、甜菜碱、DMSO、甘油、鱼精DNA和Proclin-300;The solutes of the aqueous composition include hot-start Taq enzyme, MgCl 2 , KCl, Tris-HCl, BSA, dNTP, PEG2000, betaine, DMSO, glycerol, protamine DNA and Proclin-300; 所述水相组合物中,热启动Taq酶的浓度为0.08-0.12U/μL、MgCl2的浓度为3-4mM、KCl的浓度为100-150mM、Tris-HCl的浓度为16-24mM、BSA的浓度为2-3mg/mL、dNTP的浓度为0.3-0.5mM、PEG2000的体积分数为0.6%-0.8%、甜菜碱的浓度为0.3-0.5M、DMSO的体积分数为1.6%-2.4%、甘油的体积分数为0.2-0.3%、鱼精DNA的浓度为0.4-0.6ng/μL、Proclin-300体积分数为0.03%-0.05%。In the aqueous phase composition, the concentration of hot-start Taq enzyme is 0.08-0.12 U/μL, the concentration of MgCl 2 is 3-4 mM, the concentration of KCl is 100-150 mM, the concentration of Tris-HCl is 16-24 mM, and the concentration of BSA The concentration of 2-3mg/mL, the concentration of dNTP is 0.3-0.5mM, the volume fraction of PEG2000 is 0.6%-0.8%, the concentration of betaine is 0.3-0.5M, the volume fraction of DMSO is 1.6%-2.4%, The volume fraction of glycerol was 0.2-0.3%, the concentration of proclin DNA was 0.4-0.6 ng/μL, and the volume fraction of Proclin-300 was 0.03%-0.05%. 4.根据权利要求3所述的微滴式数字PCR组合物,其特征在于,所述水相组合物中,热启动Taq酶的浓度为0.1U/μL、MgCl2的浓度为3.5mM、KCl的浓度为125mM、Tris-HCl的浓度为20mM、BSA的浓度为2.5mg/mL、dNTP的浓度为0.4mM、PEG2000的体积分数为0.7%、甜菜碱的浓度为0.4M、DMSO的体积分数为2%、甘油的体积分数为0.25%、鱼精DNA的浓度为0.5ng/μL、Proclin-300的体积分数为0.04%。4. The droplet digital PCR composition according to claim 3, wherein in the aqueous phase composition, the concentration of hot-start Taq enzyme is 0.1 U/μL, the concentration of MgCl is 3.5 mM, the concentration of KCl 125 mM, 20 mM Tris-HCl, 2.5 mg/mL BSA, 0.4 mM dNTP, 0.7% PEG2000, 0.4 M betaine, and 0.4 M DMSO 2%, the volume fraction of glycerol was 0.25%, the concentration of protamine DNA was 0.5 ng/μL, and the volume fraction of Proclin-300 was 0.04%. 5.根据权利要求3所述的微滴式数字PCR组合物,其特征在于,所述水相组合物的溶质还包括引物对、探针和荧光素钠盐。5 . The droplet digital PCR composition according to claim 3 , wherein the solute of the aqueous composition further comprises primer pairs, probes and fluorescein sodium salt. 6 . 6.根据权利要求5所述的微滴式数字PCR组合物,其特征在于,所述引物对的浓度为600-1000nM,优选为800nM。6. The droplet digital PCR composition according to claim 5, wherein the concentration of the primer pair is 600-1000 nM, preferably 800 nM. 7.根据权利要求5所述的微滴式数字PCR组合物,其特征在于,所述探针的浓度为160-240nM,优选为200nM。7. The droplet digital PCR composition according to claim 5, wherein the concentration of the probe is 160-240 nM, preferably 200 nM. 8.根据权利要求5所述的微滴式数字PCR组合物,其特征在于,所述荧光素钠盐的浓度为80-120nM,优选为100nM。8 . The droplet digital PCR composition according to claim 5 , wherein the concentration of the fluorescein sodium salt is 80-120 nM, preferably 100 nM. 9 . 9.权利要求1或2所述的微滴式数字PCR油相组合物或者权利要求3-8任一项所述的微滴式数字PCR组合物在微滴式数字PCR中的应用。9 . The application of the droplet digital PCR oil phase composition of claim 1 or 2 or the droplet digital PCR composition of any one of claims 3 to 8 in droplet digital PCR. 10 . 10.一种微滴式数字PCR试剂盒,其特征在于,包括权利要求1或2所述的微滴式数字PCR油相组合物或者权利要求3-8任一项所述的微滴式数字PCR组合物。10. A droplet digital PCR kit, characterized in that it comprises the droplet digital PCR oil phase composition of claim 1 or 2 or the droplet digital PCR described in any one of claims 3-8 PCR composition.
CN202210771786.1A 2022-06-30 2022-06-30 Droplet digital PCR oil phase composition, droplet digital PCR composition and its application and kit Pending CN114941023A (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
CN202210771786.1A CN114941023A (en) 2022-06-30 2022-06-30 Droplet digital PCR oil phase composition, droplet digital PCR composition and its application and kit

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
CN202210771786.1A CN114941023A (en) 2022-06-30 2022-06-30 Droplet digital PCR oil phase composition, droplet digital PCR composition and its application and kit

Publications (1)

Publication Number Publication Date
CN114941023A true CN114941023A (en) 2022-08-26

Family

ID=82910612

Family Applications (1)

Application Number Title Priority Date Filing Date
CN202210771786.1A Pending CN114941023A (en) 2022-06-30 2022-06-30 Droplet digital PCR oil phase composition, droplet digital PCR composition and its application and kit

Country Status (1)

Country Link
CN (1) CN114941023A (en)

Cited By (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN110218777A (en) * 2019-06-14 2019-09-10 苏州叠代生物科技有限公司 PCR premixed liquid
CN118272569A (en) * 2024-05-07 2024-07-02 中国计量科学研究院 Quantitative PCR kit for wheat bunt pathogen and its detection method
WO2025040497A1 (en) * 2023-08-18 2025-02-27 Qiagen Gmbh Method for improving nucleic acid processing

Citations (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2010036352A1 (en) * 2008-09-23 2010-04-01 Quantalife, Inc Droplet-based assay system
CN108441541A (en) * 2013-03-08 2018-08-24 伯乐生命医学产品有限公司 Composition, the method and system measured for polymerase chain reaction
CN109136342A (en) * 2017-06-19 2019-01-04 广东顺德工业设计研究院(广东顺德创新设计研究院) Droplet type digital pcr sonde method reaction system, detection method and application
WO2019077114A1 (en) * 2017-10-20 2019-04-25 Stilla Technologies Emulsions with improved stability
CN110042152A (en) * 2019-05-20 2019-07-23 北京达微生物科技有限公司 PCR increased response agent composition, droplet type digital pcr reaction solution and its application
CN110218777A (en) * 2019-06-14 2019-09-10 苏州叠代生物科技有限公司 PCR premixed liquid

Patent Citations (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
WO2010036352A1 (en) * 2008-09-23 2010-04-01 Quantalife, Inc Droplet-based assay system
CN108441541A (en) * 2013-03-08 2018-08-24 伯乐生命医学产品有限公司 Composition, the method and system measured for polymerase chain reaction
CN109136342A (en) * 2017-06-19 2019-01-04 广东顺德工业设计研究院(广东顺德创新设计研究院) Droplet type digital pcr sonde method reaction system, detection method and application
WO2019077114A1 (en) * 2017-10-20 2019-04-25 Stilla Technologies Emulsions with improved stability
CN110042152A (en) * 2019-05-20 2019-07-23 北京达微生物科技有限公司 PCR increased response agent composition, droplet type digital pcr reaction solution and its application
CN110218777A (en) * 2019-06-14 2019-09-10 苏州叠代生物科技有限公司 PCR premixed liquid

Cited By (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN110218777A (en) * 2019-06-14 2019-09-10 苏州叠代生物科技有限公司 PCR premixed liquid
WO2025040497A1 (en) * 2023-08-18 2025-02-27 Qiagen Gmbh Method for improving nucleic acid processing
CN118272569A (en) * 2024-05-07 2024-07-02 中国计量科学研究院 Quantitative PCR kit for wheat bunt pathogen and its detection method

Similar Documents

Publication Publication Date Title
CN114941023A (en) Droplet digital PCR oil phase composition, droplet digital PCR composition and its application and kit
AU2017331459B2 (en) Measurement of protein expression using reagents with barcoded oligonucleotide sequences
ES2989072T3 (en) Barcode identification of nuclei and capture in single cells
Comas-Garcia et al. In vitro quantification of the relative packaging efficiencies of single-stranded RNA molecules by viral capsid protein
ES2992313T3 (en) Target capture in monodisperse droplets
Khromykh et al. trans-Complementation analysis of the flavivirus Kunjin ns5 gene reveals an essential role for translation of its N-terminal half in RNA replication
JP2015091261A (en) Dry composition of reactive compound and stabilized polymerase
JP5985503B2 (en) Universal reference dye for quantitative amplification
JP2023535104A (en) Compositions and methods for extracting ribonucleic acid
Emara et al. Mutation of mapped TIA-1/TIAR binding sites in the 3′ terminal stem-loop of West Nile virus minus-strand RNA in an infectious clone negatively affects genomic RNA amplification
US9353311B2 (en) Composite visible colorant and method for quantitative amplification
CN110042151B (en) Oil phase composition for preparing digital PCR microdroplets and application thereof
US11634757B2 (en) Emulsions with improved stability
ES2459766T3 (en) Membrane Test Method
Reynisdóttir et al. Thermally inactivated simian virus 40 tsA58 mutant T antigen cannot initiate viral DNA replication in vitro
CN114369647B (en) Water-in-oil droplet for microdroplet digital PCR and application thereof
CN114173746A (en) Systems and methods for stabilizing emulsions
EP4170045A1 (en) Method for separating nucleic acid amplification system, and separator
JP5608997B2 (en) Nucleic acid amplification detection reagent kit with excellent storage stability
CN106032551B (en) Method for detecting back mutation in virus sample and kit for the same
CN110551798A (en) composition, method and system for digital polymerase chain reaction determination
KR970001554A (en) Method for preparing DNA polymerase reaction mixture
JP2005160387A (en) Nucleic acid amplification method and primer set for nucleic acid amplification
Burrows Improved preparation of polyvinyl alcohol-HgCl2 fixative used for fecal smears
CN114891927A (en) One-step method for detection of dengue fever and Zika virus in blood based on digital PCR

Legal Events

Date Code Title Description
PB01 Publication
PB01 Publication
SE01 Entry into force of request for substantive examination
SE01 Entry into force of request for substantive examination