CN114941023A - Droplet digital PCR oil phase composition, droplet digital PCR composition and its application and kit - Google Patents
Droplet digital PCR oil phase composition, droplet digital PCR composition and its application and kit Download PDFInfo
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Abstract
本发明提供了一种微滴式数字PCR油相组合物、微滴式数字PCR组合物及其应用和试剂盒,涉及生物技术领域。本发明提供的微滴式数字PCR油相组合物,包括特定配比的氟化油和PFPE‑PEG‑PFPE,该油相组合物与水相形成的微滴大小均匀,稳定性好,对于PCR扩增的影响小,能够作为油相应用于微滴式数字PCR中。本发明提供的微滴式数字PCR组合物,包括上述微滴式数字PCR油相组合物和水相组合物,其中水相组合物含有特定浓度的热启动Taq酶、MgCl2、KCl、Tris‑HCl、BSA、dNTP、PEG2000、甜菜碱、DMSO、甘油、鱼精DNA和Proclin‑300,该组合物形成的液滴更稳定。
The invention provides a microdroplet type digital PCR oil phase composition, a microdroplet type digital PCR composition and an application and a kit thereof, and relates to the field of biotechnology. The microdroplet digital PCR oil phase composition provided by the present invention includes fluorinated oil and PFPE-PEG-PFPE in a specific proportion, and the microdroplets formed by the oil phase composition and the water phase are uniform in size and have good stability, and are suitable for PCR The effect of amplification is small, and it can be used in droplet digital PCR as an oil phase. The droplet digital PCR composition provided by the present invention includes the above-mentioned droplet digital PCR oil phase composition and water phase composition, wherein the water phase composition contains a specific concentration of hot-start Taq enzyme, MgCl 2 , KCl, Tris- HCl, BSA, dNTP, PEG2000, betaine, DMSO, glycerol, protamine DNA, and Proclin‑300, the composition forms more stable droplets.
Description
技术领域technical field
本发明涉及生物技术领域,尤其是涉及一种微滴式数字PCR油相组合物、微滴式数字PCR组合物及其应用和试剂盒。The invention relates to the field of biotechnology, in particular to a droplet type digital PCR oil phase composition, a droplet type digital PCR composition and its application and kit.
背景技术Background technique
数字PCR即dPCR,通过对核酸模板进行一定的稀释后,将其随机分配到大量的反应单元中进行扩增反应,扩增结束后对每个反应单元的荧光信号进行采集,最后通过直接计数或泊松分布公式计算得到样品的原始浓度或含量的PCR技术。数字PCR技术提出至今,相关技术和产业化发展都非常迅速。迄今为止,数字PCR技术主要有三类:微反应室/孔板、大规模集成微流控芯片和液滴数字PCR系统。微滴式数字PCR具有荧光强度高易于检测,灵敏度高,针对传染性核酸病毒的快速灵敏检测对疫情的监测与控制意义重大。Digital PCR is dPCR. After a certain dilution of the nucleic acid template, it is randomly allocated to a large number of reaction units for amplification reaction. The Poisson distribution formula calculates the original concentration or content of the sample by PCR technology. Since the introduction of digital PCR technology, related technologies and industrialization have developed very rapidly. To date, there are three main categories of digital PCR technologies: micro-reaction chambers/well plates, large-scale integrated microfluidic chips, and droplet digital PCR systems. Droplet digital PCR has high fluorescence intensity, easy detection, and high sensitivity. The rapid and sensitive detection of infectious nucleic acid viruses is of great significance to the monitoring and control of epidemics.
微滴式数字PCR是油包水型液滴,关键的在于PCR扩增中维持油包水液滴的稳定性。在表面活性剂存在下的亚稳态状态,这本身是一个不符合热力学平衡的体系,因此在液滴数字化应用中,液滴存在聚结或者破裂的趋势。针对上述两种现象,通常的解决办法就是在油内添加表面活性剂,它通过两端不同的极性成分稳定在液滴的油水界面,平衡系统均质化的驱动力,使分散体稳定在亚稳态,确保液滴之间不易凝结。并且为了液滴能保证扩增的稳定性和储存稳定性,水相中往往也需要加入稳定剂,和油相中表面活性剂共同作用,维持液滴的稳定性。Droplet digital PCR is a water-in-oil droplet, and the key is to maintain the stability of the water-in-oil droplet during PCR amplification. The metastable state in the presence of surfactants is a system that does not conform to thermodynamic equilibrium. Therefore, in the application of droplet digitization, the droplets tend to coalesce or rupture. In view of the above two phenomena, the usual solution is to add surfactants in the oil, which stabilize the oil-water interface of the droplets through different polar components at both ends, balance the driving force of the homogenization of the system, and stabilize the dispersion in the The metastable state ensures that the droplets are not easily coagulated. And in order to ensure the stability of the amplification and storage stability of the droplets, it is often necessary to add a stabilizer to the water phase to act together with the surfactant in the oil phase to maintain the stability of the droplets.
有鉴于此,特提出本发明。In view of this, the present invention is proposed.
发明内容SUMMARY OF THE INVENTION
本发明的第一目的在于提供一种微滴式数字PCR油相组合物。The first objective of the present invention is to provide a droplet digital PCR oil phase composition.
本发明的第二目的在于提供一种微滴式数字PCR组合物,以该组合物制备得到的液滴更稳定。The second object of the present invention is to provide a droplet digital PCR composition, the droplets prepared with the composition are more stable.
本发明的第三目的在于提供上述微滴式数字PCR油相组合物或微滴式数字PCR组合物在微滴数字PCR中的应用。The third object of the present invention is to provide the above-mentioned droplet digital PCR oil phase composition or the application of the droplet digital PCR composition in droplet digital PCR.
本发明的第四目的在于提供一种微滴式数字PCR试剂盒。The fourth object of the present invention is to provide a droplet type digital PCR kit.
第一方面,本发明提供了一种微滴式数字PCR油相组合物,按质量份数计,包括:氟化油92-98份和PFPE-PEG-PFPE2-8份。In a first aspect, the present invention provides a droplet digital PCR oil phase composition, which, in parts by mass, comprises: 92-98 parts of fluorinated oil and 2-8 parts of PFPE-PEG-PFPE.
作为进一步技术方案,按质量份数计,包括:氟化油93-97份和 PFPE-PEG-PFPE 3-7份;As a further technical solution, in parts by mass, including: 93-97 parts of fluorinated oil and 3-7 parts of PFPE-PEG-PFPE;
优选地,按质量份数计,包括:氟化油95份和PFPE-PEG-PFPE 5份。Preferably, in parts by mass, it includes: 95 parts of fluorinated oil and 5 parts of PFPE-PEG-PFPE.
第二方面,本发明提供了一种微滴式数字PCR组合物,包括所述的微滴式数字PCR油相组合物和水相组合物;In a second aspect, the present invention provides a droplet digital PCR composition, including the droplet digital PCR oil phase composition and water phase composition;
所述水相组合物的溶质包括热启动Taq酶、MgCl2、KCl、Tris-HCl、 BSA、dNTP、PEG2000、甜菜碱、DMSO、甘油、鱼精DNA和Proclin-300;The solutes of the aqueous composition include hot-start Taq enzyme, MgCl 2 , KCl, Tris-HCl, BSA, dNTP, PEG2000, betaine, DMSO, glycerol, protamine DNA and Proclin-300;
所述水相组合物中,热启动Taq酶的浓度为0.08-0.12U/μL、MgCl2的浓度为3-4mM、KCl的浓度为100-150mM、Tris-HCl的浓度为16-24mM、 BSA的浓度为2-3mg/mL、dNTP的浓度为0.3-0.5mM、PEG2000的体积分数为0.6%-0.8%、甜菜碱的浓度为0.3-0.5M、DMSO的体积分数为 1.6%-2.4%、甘油的体积分数为0.2%-0.3%、鱼精DNA的浓度为 0.4-0.6ng/μL、Proclin-300的体积分数为0.03%-0.05%。In the aqueous phase composition, the concentration of hot-start Taq enzyme is 0.08-0.12 U/μL, the concentration of MgCl 2 is 3-4 mM, the concentration of KCl is 100-150 mM, the concentration of Tris-HCl is 16-24 mM, and the concentration of BSA The concentration of 2-3mg/mL, the concentration of dNTP is 0.3-0.5mM, the volume fraction of PEG2000 is 0.6%-0.8%, the concentration of betaine is 0.3-0.5M, the volume fraction of DMSO is 1.6%-2.4%, The volume fraction of glycerol was 0.2%-0.3%, the concentration of protamine DNA was 0.4-0.6 ng/μL, and the volume fraction of Proclin-300 was 0.03%-0.05%.
作为进一步技术方案,所述水相组合物中,热启动Taq酶的浓度为 0.1U/μL、MgCl2的浓度为3.5mM、KCl的浓度为125mM、Tris-HCl的浓度为20mM、BSA的浓度为2.5mg/mL、dNTP的浓度为0.4mM、PEG2000的体积分数为0.7%、甜菜碱的浓度为0.4M、DMSO的体积分数为2%、甘油的体积分数为0.25%、鱼精DNA的浓度为0.5ng/μL、Proclin-300体积分数为0.04%。As a further technical solution, in the aqueous phase composition, the concentration of hot-start Taq enzyme is 0.1 U/μL, the concentration of MgCl 2 is 3.5 mM, the concentration of KCl is 125 mM, the concentration of Tris-HCl is 20 mM, and the concentration of BSA is 20 mM. 2.5mg/mL, dNTP concentration of 0.4mM, PEG2000 volume fraction of 0.7%, betaine concentration of 0.4M, DMSO volume fraction of 2%, glycerol volume fraction of 0.25%, fish sperm DNA concentration It is 0.5ng/μL, and the volume fraction of Proclin-300 is 0.04%.
作为进一步技术方案,所述水相组合物的溶质还包括引物对、探针和荧光素钠盐。As a further technical solution, the solute of the aqueous composition further includes a primer pair, a probe and a fluorescein sodium salt.
作为进一步技术方案,所述引物对的浓度为600-1000nM,优选为 800nM;As a further technical solution, the concentration of the primer pair is 600-1000nM, preferably 800nM;
优选地,所述探针的浓度为160-240nM,优选为200nM;Preferably, the concentration of the probe is 160-240nM, preferably 200nM;
优选地,所述荧光素钠盐的浓度为80-120nM,优选为100nM。Preferably, the concentration of the fluorescein sodium salt is 80-120 nM, preferably 100 nM.
第三方面,本发明提供了所述的微滴式数字PCR油相组合物或者所述的微滴式数字PCR组合物在微滴式数字PCR中的应用。In a third aspect, the present invention provides the droplet digital PCR oil phase composition or the application of the droplet digital PCR composition in droplet digital PCR.
第四方面,本发明提供了一种微滴式数字PCR试剂盒,包括所述的微滴式数字PCR油相组合物或者所述的微滴式数字PCR组合物。In a fourth aspect, the present invention provides a droplet digital PCR kit, comprising the droplet digital PCR oil phase composition or the droplet digital PCR composition.
与现有技术相比,本发明具有如下有益效果:Compared with the prior art, the present invention has the following beneficial effects:
本发明提供的微滴式数字PCR油相组合物,包括特定配比的氟化油和 PFPE-PEG-PFPE,该油相组合物与水相形成的微滴大小均匀,稳定性好,对于PCR扩增的影响小,能够作为油相应用于微滴式数字PCR中。The microdroplet digital PCR oil phase composition provided by the present invention includes fluorinated oil and PFPE-PEG-PFPE in a specific proportion, and the microdroplets formed by the oil phase composition and the water phase are uniform in size and have good stability, and are suitable for PCR The effect of amplification is small, and it can be used in droplet digital PCR as an oil phase.
本发明提供的微滴式数字PCR组合物,包括上述微滴式数字PCR油相组合物和水相组合物,其中水相组合物含有特定浓度的热启动Taq酶、 MgCl2、KCl、Tris-HCl、BSA、dNTP、PEG2000、甜菜碱、DMSO、甘油、鱼精DNA和Proclin-300,该水相组合物和油相组合物存在配合作用,二者混合形成的油包水液滴更稳定,且用于PCR扩增的灵敏度高,特异性强,扩增效率高,适用于各种核酸的扩增。The droplet digital PCR composition provided by the present invention includes the above-mentioned droplet digital PCR oil phase composition and water phase composition, wherein the water phase composition contains a specific concentration of hot-start Taq enzyme, MgCl 2 , KCl, Tris- HCl, BSA, dNTP, PEG2000, betaine, DMSO, glycerol, protamine DNA and Proclin-300, the water-phase composition and the oil-phase composition have a cooperative effect, and the water-in-oil droplets formed by mixing the two are more stable, And the PCR amplification has high sensitivity, strong specificity and high amplification efficiency, and is suitable for the amplification of various nucleic acids.
附图说明Description of drawings
为了更清楚地说明本发明具体实施方式或现有技术中的技术方案,下面将对具体实施方式或现有技术描述中所需要使用的附图作简单地介绍,显而易见地,下面描述中的附图是本发明的一些实施方式,对于本领域普通技术人员来讲,在不付出创造性劳动的前提下,还可以根据这些附图获得其他的附图。In order to illustrate the specific embodiments of the present invention or the technical solutions in the prior art more clearly, the following briefly introduces the accompanying drawings that need to be used in the description of the specific embodiments or the prior art. Obviously, the accompanying drawings in the following description The drawings are some embodiments of the present invention. For those of ordinary skill in the art, other drawings can also be obtained based on these drawings without creative efforts.
图1为硅油生成的微滴;Fig. 1 is the droplet generated by silicone oil;
图2为矿物油生成的微滴;Figure 2 is a droplet generated by mineral oil;
图3为氟化油生成的微滴;Fig. 3 is the droplet that fluorinated oil generates;
图4为对比例1提供的油相组合物生成的微滴;Fig. 4 is the droplet generated by the oil phase composition provided by Comparative Example 1;
图5为对比例2提供的油相组合物生成的微滴;Fig. 5 is the droplet generated by the oil phase composition provided by Comparative Example 2;
图6为对比例3提供的油相组合物生成的微滴;Figure 6 is the droplet generated by the oil phase composition provided by Comparative Example 3;
图7为对比例4提供的油相组合物生成的微滴;Figure 7 is the droplet generated by the oil phase composition provided by Comparative Example 4;
图8为对比例5提供的油相组合物生成的微滴;Figure 8 is the droplet generated by the oil phase composition provided by Comparative Example 5;
图9为实施例1提供的油相组合物生成的微滴;Figure 9 is the droplet generated by the oil phase composition provided in Example 1;
图10为实施例2提供的油相组合物生成的微滴;Figure 10 is the droplet generated by the oil phase composition provided in Example 2;
图11为实施例3提供的油相组合物生成的微滴;Figure 11 is the droplet generated by the oil phase composition provided in Example 3;
图12为利用实施例5配制的油相和水相生成微滴经过PCR扩增之后的荧光图片;Figure 12 is a fluorescence picture after PCR amplification of microdroplets prepared by using the oil phase and water phase prepared in Example 5;
图13为利用实施例6配制的油相和水相生成微滴经过PCR扩增之后的荧光图片;Figure 13 is a fluorescence picture after PCR amplification of microdroplets prepared by using the oil phase and water phase prepared in Example 6;
图14为利用实施例4配制的油相和水相生成微滴经过PCR扩增之后的荧光图片;Figure 14 is a fluorescence picture after PCR amplification of microdroplets prepared by using the oil phase and water phase prepared in Example 4;
图15为利用实施例4配制的油相和水相生成微滴经过PCR扩增之后放置7天的荧光图片;Fig. 15 is the fluorescence picture that utilizes the oil phase and the water phase prepared by Example 4 to generate microdroplets after PCR amplification and place them for 7 days;
图16为利用对比例6配制的油相和水相生成微滴经过PCR扩增之后的荧光图片;16 is a fluorescence picture after PCR amplification of microdroplets prepared by using the oil phase and water phase prepared in Comparative Example 6;
图17为利用对比例7配制的油相和水相生成微滴经过PCR扩增之后的荧光图片;Figure 17 is a fluorescence picture after PCR amplification of microdroplets prepared by using the oil phase and water phase prepared in Comparative Example 7;
图18为利用对比例8配制的油相和水相生成微滴经过PCR扩增之后的荧光图片。FIG. 18 is a fluorescent picture after PCR amplification of microdroplets prepared by using the oil phase and the water phase prepared in Comparative Example 8. FIG.
具体实施方式Detailed ways
下面将结合实施方式和实施例对本发明的实施方案进行详细描述,但是本领域技术人员将会理解,下列实施方式和实施例仅用于说明本发明,而不应视为限制本发明的范围。基于本发明中的实施例,本领域普通技术人员在没有做出创造性劳动前提下所获得的所有其他实施例,都属于本发明保护的范围。未注明具体条件者,按照常规条件或制造商建议的条件进行。所用试剂或仪器未注明生产厂商者,均为可以通过市售购买获得的常规产品。The embodiments of the present invention will be described in detail below in conjunction with the embodiments and examples, but those skilled in the art will understand that the following embodiments and examples are only used to illustrate the present invention, and should not be regarded as limiting the scope of the present invention. Based on the embodiments of the present invention, all other embodiments obtained by those of ordinary skill in the art without creative efforts shall fall within the protection scope of the present invention. If no specific conditions are specified, follow the general conditions or the conditions suggested by the manufacturer. The reagents or instruments used without the manufacturer's indication are conventional products that can be purchased from the market.
第一方面,本发明提供了一种微滴式数字PCR油相组合物,按质量份数计,包括:氟化油92-98份和PFPE-PEG-PFPE 2-8份。In a first aspect, the present invention provides a droplet digital PCR oil phase composition, which, in parts by mass, comprises: 92-98 parts of fluorinated oil and 2-8 parts of PFPE-PEG-PFPE.
本发明中,氟化油的质量份数例如可以为,但不限于92份、93份、94 份、95份、96份、97份或98份;PFPE-PEG-PFPE的质量份数例如可以为,但不限于2份、3份、4份、5份、6份、7份或8份。In the present invention, the mass fraction of fluorinated oil can be, for example, but not limited to 92 parts, 93 parts, 94 parts, 95 parts, 96 parts, 97 parts or 98 parts; the mass fraction of PFPE-PEG-PFPE can be, for example, For, but not limited to, 2, 3, 4, 5, 6, 7, or 8 servings.
经发明人研究发现,包括特定配比的氟化油和PFPE-PEG-PFPE的油相组合物与水相形成的微滴大小均匀,稳定性好,对于PCR扩增的影响小,能够作为油相应用于微滴式数字PCR中。The inventors have found that the droplets formed by the oil phase composition comprising a specific ratio of fluorinated oil and PFPE-PEG-PFPE and the water phase are uniform in size, have good stability, and have little impact on PCR amplification, and can be used as oil. Correspondingly used in droplet digital PCR.
在一些优选的实施方式中,按质量份数计,包括:氟化油93-97份和 PFPE-PEG-PFPE 3-7份;In some preferred embodiments, in parts by mass, including: 93-97 parts of fluorinated oil and 3-7 parts of PFPE-PEG-PFPE;
优选地,按质量份数计,包括:氟化油95份和PFPE-PEG-PFPE 5份。Preferably, in parts by mass, it includes: 95 parts of fluorinated oil and 5 parts of PFPE-PEG-PFPE.
通过对微滴式数字PCR油相组合物中各个组分配比的进一步优化和调整,使得该油相组合与水相混合制备得到的微滴的大小更加均匀,稳定性更好。By further optimizing and adjusting the distribution ratio of each component in the oil phase composition of the microdroplet digital PCR, the size of the microdroplets prepared by mixing the oil phase combination with the water phase is more uniform and the stability is better.
第二方面,本发明提供了一种微滴式数字PCR组合物,包括所述的微滴式数字PCR油相组合物和水相组合物;In a second aspect, the present invention provides a droplet digital PCR composition, including the droplet digital PCR oil phase composition and water phase composition;
所述水相组合物的溶质包括热启动Taq酶、MgCl2、KCl、Tris-HCl、 BSA、dNTP、PEG2000、甜菜碱、DMSO、甘油、鱼精DNA和Proclin-300。The solutes of the aqueous composition include hot-start Taq enzyme, MgCl2 , KCl, Tris-HCl, BSA, dNTPs, PEG2000, betaine, DMSO, glycerol, protamine DNA and Proclin-300.
所述水相组合物中,热启动Taq酶的浓度例如可以为,但不限于0.08U/μL、0.09U/μL、0.10U/μL、0.11U/μL或0.12U/μL;MgCl2的浓度例如可以为,但不限于3mM、3.2mM、3.4mM、3.6mM、3.8mM或4mM; KCl的浓度例如可以为,但不限于100mM、110mM、120mM、130mM、140mM或150mM;Tris-HCl的浓度例如可以为,但不限于16mM、18mM、20mM、 22mM或24mM;BSA的浓度例如可以为,但不限于2mg/mL、2.2mg/mL、 2.4mg/mL、2.6mg/mL、2.8mg/mL或3mg/mL。dNTP的浓度例如可以为,但不限于0.3mM、0.34mM、0.38mM、0.42mM、0.46mM或0.5mM;PEG2000 的体积分数例如可以为,但不限于0.6%、0.64%、0.68%、0.72%、0.76%或 0.8%;甜菜碱的浓度例如可以为,但不限于0.3M、0.34M、0.38M、0.42M、 0.46M或0.5M;DMSO的浓体积分数如可以为,但不限于1.6%、1.8%、2.0%、 2.2%或2.4%;甘油的体积分数例如可以为,但不限于0.2%、0.22%、0.24%、 0.26%、0.28%、或0.3%;鱼精DNA的浓度例如可以为,但不限于0.4ng/μL、 0.44ng/μL、0.48ng/μL、0.52ng/μL、0.56ng/μL或0.6ng/μL;Proclin-300的体积分数例如可以为,但不限于0.03%、0.035%、0.04%、0.045%或0.05%。In the aqueous phase composition, the concentration of the hot-start Taq enzyme can be, for example, but not limited to, 0.08U/μL, 0.09U/μL, 0.10U/μL, 0.11U/μL or 0.12U/μL; the concentration of MgCl 2 For example, it can be, but not limited to, 3mM, 3.2mM, 3.4mM, 3.6mM, 3.8mM or 4mM; the concentration of KCl can be, for example, but not limited to, 100mM, 110mM, 120mM, 130mM, 140mM or 150mM; the concentration of Tris-HCl For example, it can be, but not limited to, 16mM, 18mM, 20mM, 22mM or 24mM; the concentration of BSA can be, for example, but not limited to, 2mg/mL, 2.2mg/mL, 2.4mg/mL, 2.6mg/mL, 2.8mg/mL or 3mg/mL. The concentration of dNTP can be, for example, but not limited to, 0.3 mM, 0.34 mM, 0.38 mM, 0.42 mM, 0.46 mM or 0.5 mM; the volume fraction of PEG2000 can be, for example, but not limited to, 0.6%, 0.64%, 0.68%, 0.72% , 0.76% or 0.8%; the concentration of betaine can be, for example, but not limited to, 0.3M, 0.34M, 0.38M, 0.42M, 0.46M or 0.5M; the concentration volume fraction of DMSO can be, but not limited to, 1.6% , 1.8%, 2.0%, 2.2% or 2.4%; the volume fraction of glycerol can be, for example, but not limited to, 0.2%, 0.22%, 0.24%, 0.26%, 0.28%, or 0.3%; the concentration of fish sperm DNA, for example, can be is, but not limited to, 0.4ng/μL, 0.44ng/μL, 0.48ng/μL, 0.52ng/μL, 0.56ng/μL or 0.6ng/μL; the volume fraction of Proclin-300 can be, for example, but not limited to 0.03% , 0.035%, 0.04%, 0.045% or 0.05%.
本发明提供的微滴式数字PCR组合物,包括上述微滴式数字PCR油相组合物和水相组合物,其中水相组合物含有特定浓度的热启动Taq酶、 MgCl2、KCl、Tris-HCl、BSA、dNTP、PEG2000、甜菜碱、DMSO、甘油、鱼精DNA和Proclin-300,该微滴式数字PCR组合物形成的油包水液滴更稳定,且用于PCR扩增的灵敏度高,特异性强,扩增效率高,适用于各种核酸的扩增。The droplet digital PCR composition provided by the present invention includes the above-mentioned droplet digital PCR oil phase composition and water phase composition, wherein the water phase composition contains a specific concentration of hot-start Taq enzyme, MgCl 2 , KCl, Tris- HCl, BSA, dNTP, PEG2000, betaine, DMSO, glycerol, protamine DNA and Proclin-300, the droplet digital PCR composition forms water-in-oil droplets that are more stable and have high sensitivity for PCR amplification , strong specificity, high amplification efficiency, suitable for the amplification of various nucleic acids.
在一些优选的实施方式中,所述水相组合物中,热启动Taq酶的浓度为0.1U/μL、MgCl2的浓度为3.5mM、KCl的浓度为75mM、Tris-HCl的浓度为20mM、BSA的浓度为2.5mg/mL、dNTP的浓度为0.4mM、PEG2000 的体积分数为0.7%、甜菜碱的浓度为0.4M、DMSO的体积分数为2%、甘油的体积分数为0.5%、鱼精DNA的浓度为0.5ng/μL、Proclin-300的体积分数为0.04%。In some preferred embodiments, in the aqueous composition, the concentration of hot-start Taq enzyme is 0.1 U/μL, the concentration of MgCl 2 is 3.5 mM, the concentration of KCl is 75 mM, the concentration of Tris-HCl is 20 mM, The concentration of BSA was 2.5mg/mL, the concentration of dNTP was 0.4mM, the volume fraction of PEG2000 was 0.7%, the concentration of betaine was 0.4M, the volume fraction of DMSO was 2%, the volume fraction of glycerol was 0.5%, and the The concentration of DNA was 0.5 ng/μL, and the volume fraction of Proclin-300 was 0.04%.
通过对微滴式数字PCR组合物中水相组合物组分浓度的进一步优化和调整,使得该组合物制备得到的微滴的稳定性更好,提高核酸扩增的特异性、灵敏度和扩增效率。By further optimizing and adjusting the concentration of the water-phase composition components in the microdroplet digital PCR composition, the stability of the microdroplets prepared by the composition is better, and the specificity, sensitivity and amplification of nucleic acid amplification are improved. efficiency.
在一些优选的实施方式中,所述水相组合物的溶质还包括引物对、探针和荧光素钠盐,从而实现对目的核酸的检测或定量。In some preferred embodiments, the solute of the aqueous composition further includes a primer pair, a probe and fluorescein sodium salt, so as to realize the detection or quantification of the target nucleic acid.
在一些优选的实施方式中,引物对的浓度例如可以为,但不限于 600nM、700nM、800nM、900nM或1000nM,优选为800nM;所述探针的浓度例如可以为,但不限于160nM、180nM、200nM、220nM或240nM,优选为200nM;所述荧光素钠盐的浓度例如可以为,但不限于80nM、90nM、 100nM、110nM或120nM,优选为100nM。In some preferred embodiments, the concentration of the primer pair can be, for example, but not limited to, 600nM, 700nM, 800nM, 900nM or 1000nM, preferably 800nM; the concentration of the probe can be, for example, but not limited to 160nM, 180nM, 200nM, 220nM or 240nM, preferably 200nM; the concentration of the fluorescein sodium salt can be, for example, but not limited to, 80nM, 90nM, 100nM, 110nM or 120nM, preferably 100nM.
第三方面,本发明提供了所述的微滴式数字PCR油相组合物或者所述的微滴式数字PCR组合物在微滴式数字PCR中的应用。In a third aspect, the present invention provides the droplet digital PCR oil phase composition or the application of the droplet digital PCR composition in droplet digital PCR.
本发明提供的微滴式数字PCR油相组合物能够与水相形成大小均匀、稳定性好的微滴,该微滴对于PCR扩增的影响小;本发明提供的微滴式数字PCR组合物,包括特定组分的油相组合物和水相组合物,通过二者的协同配合作用,制备得到的油包水液滴更稳定,且用于PCR扩增的灵敏度高,特异性强,扩增效率高。因此,本发明提供的微滴式数字PCR油相组合物和微滴式数字PCR组合物均能够应用于微滴式数字PCR中。The droplet digital PCR oil phase composition provided by the present invention can form droplets with uniform size and good stability with the water phase, and the droplets have little influence on PCR amplification; the droplet digital PCR composition provided by the present invention , including the oil phase composition and the water phase composition of specific components, through the synergistic effect of the two, the prepared water-in-oil droplets are more stable, and have high sensitivity and specificity for PCR amplification. High efficiency. Therefore, both the oil phase composition of droplet type digital PCR and the composition of droplet type digital PCR provided by the present invention can be applied to the droplet type digital PCR.
第四方面,本发明提供了一种微滴式数字PCR试剂盒,包括所述的微滴式数字PCR油相组合物或者所述的微滴式数字PCR组合物。In a fourth aspect, the present invention provides a droplet digital PCR kit, comprising the droplet digital PCR oil phase composition or the droplet digital PCR composition.
该试剂盒适用于各种核酸的扩增,且PCR扩增的灵敏度高,特异性强,扩增效率好。The kit is suitable for the amplification of various nucleic acids, and the PCR amplification has high sensitivity, strong specificity and good amplification efficiency.
下面通过具体的实施例和对比例进一步说明本发明,但是,应当理解为,这些实施例仅仅是用于更详细地说明之用,而不应理解为用于以任何形式限制本发明。The present invention is further described below through specific examples and comparative examples, however, it should be understood that these examples are only used for more detailed description, and should not be construed to limit the present invention in any form.
需要说明的是,以下实施例或者试验例中所用到的引物对、探针及质粒模板的目的片段如下,其中质粒为pUC57。It should be noted that the target fragments of primer pairs, probes and plasmid templates used in the following examples or test examples are as follows, wherein the plasmid is pUC57.
实施例1Example 1
一种微滴式数字PCR油相组合物,按质量份数计,包括氟化油95份和双子表面活性剂5份。A droplet type digital PCR oil phase composition, calculated in parts by mass, comprises 95 parts of fluorinated oil and 5 parts of gemini surfactant.
其中双子表面活性剂为PFPE-PEG-PFPE。The gemini surfactant is PFPE-PEG-PFPE.
实施例2Example 2
一种微滴式数字PCR油相组合物,按质量份数计,包括氟化油92份和双子表面活性剂8份。A droplet type digital PCR oil phase composition, in parts by mass, comprises 92 parts of fluorinated oil and 8 parts of gemini surfactant.
其中双子表面活性剂为PFPE-PEG-PFPE。The gemini surfactant is PFPE-PEG-PFPE.
实施例3Example 3
一种微滴式数字PCR油相组合物,按质量份数计,包括氟化油98份和双子表面活性剂2份。A microdroplet digital PCR oil phase composition, calculated in parts by mass, comprises 98 parts of fluorinated oil and 2 parts of gemini surfactant.
其中双子表面活性剂为PFPE-PEG-PFPE。The gemini surfactant is PFPE-PEG-PFPE.
对比例1Comparative Example 1
一种微滴式数字PCR油相组合物,按质量份数计,包括氟化油95份和离子型表面活性剂5份。A microdroplet digital PCR oil phase composition, in parts by mass, comprises 95 parts of fluorinated oil and 5 parts of ionic surfactant.
其中离子型表面活性剂为十二烷基二甲基羧基甜菜碱。The ionic surfactant is dodecyldimethylcarboxybetaine.
对比例2Comparative Example 2
一种微滴式数字PCR油相组合物,按质量份数计,包括氟化油95份和离子型表面活性剂5份。A microdroplet digital PCR oil phase composition, in parts by mass, comprises 95 parts of fluorinated oil and 5 parts of ionic surfactant.
其中离子型表面活性剂为十二烷基二甲基溴化铵。The ionic surfactant is dodecyl dimethyl ammonium bromide.
对比例3Comparative Example 3
一种微滴式数字PCR油相组合物,按质量份数计,包括氟化油95份和非离子型表面活性剂5份。A droplet type digital PCR oil phase composition, in parts by mass, comprises 95 parts of fluorinated oil and 5 parts of nonionic surfactant.
其中非离子型表面活性剂为Abil EM-90。The nonionic surfactant is Abil EM-90.
对比例4Comparative Example 4
一种微滴式数字PCR油相组合物,按质量份数计,包括氟化油95份和非离子型表面活性剂5份。A droplet type digital PCR oil phase composition, in parts by mass, comprises 95 parts of fluorinated oil and 5 parts of nonionic surfactant.
其中非离子型表面活性剂为Span80。Among them, the nonionic surfactant is Span80.
对比例5Comparative Example 5
一种微滴式数字PCR油相组合物,与实施例1的区别在于,氟化油85 份和双子表面活性剂15份。A droplet digital PCR oil phase composition, the difference from Example 1 is that it contains 85 parts of fluorinated oil and 15 parts of gemini surfactant.
实施例4Example 4
一种微滴式数字PCR组合物,包括实施例1的油相组合物和水相,水相组成如表1所示。A droplet digital PCR composition, comprising the oil phase composition of Example 1 and a water phase, the water phase composition is shown in Table 1.
表1Table 1
实施例5Example 5
一种微滴式数字PCR组合物,包括实施例1的油相组合物和水相,水相组成如表2所示。A droplet type digital PCR composition includes the oil phase composition of Example 1 and an aqueous phase, and the aqueous phase composition is shown in Table 2.
表2Table 2
实施例6Example 6
一种微滴式数字PCR组合物,包括实施例1的油相组合物和水相,水相组成如表3所示。A droplet type digital PCR composition includes the oil phase composition of Example 1 and an aqueous phase, and the aqueous phase composition is shown in Table 3.
表3table 3
对比例6Comparative Example 6
一种微滴式数字PCR组合物,包括实施例1的油相组合物和水相,水相组成如表3所示。A droplet type digital PCR composition includes the oil phase composition of Example 1 and an aqueous phase, and the aqueous phase composition is shown in Table 3.
表4Table 4
对比例7Comparative Example 7
一种微滴式数字PCR组合物,与实施例4的区别在于,水相中不包括甜菜碱。A droplet digital PCR composition, the difference from Example 4 is that betaine is not included in the aqueous phase.
对比例8Comparative Example 8
一种微滴式数字PCR组合物,与实施例4的区别在于,水相中不包括 PEG2000。A droplet digital PCR composition, the difference from Example 4 is that PEG2000 is not included in the aqueous phase.
试验例1Test Example 1
发明人分别以硅油,矿物油和氟化油作为油相,分别与水相(水相中,热启动Taq酶浓度为0.1U/μL、MgCl2浓度为3mM、KCl浓度为75mM、 Tris-HCl浓度为20mM、BSA浓度为0.5mg/mL、dNTP浓度为0.2mM、DMSO 体积分数为1%)制备微滴,微滴的制备方法如下:The inventors used silicone oil, mineral oil and fluorinated oil as the oil phase, respectively, and the water phase (in the water phase, the hot-start Taq enzyme concentration was 0.1 U/μL, the MgCl concentration was 3 mM, the KCl concentration was 75 mM, and the Tris-HCl concentration was 0.1 U/μL). The concentration of 20 mM, the concentration of BSA is 0.5 mg/mL, the concentration of dNTP is 0.2 mM, and the volume fraction of DMSO is 1%) to prepare droplets. The preparation method of the droplets is as follows:
先将20μL油相加入到芯片中,1200rpm,1min离心,随后将10μL水相加入到芯片中,1200rpm,1min离心。First, 20 μL of the oil phase was added to the chip, centrifuged at 1200 rpm for 1 min, and then 10 μL of the aqueous phase was added to the chip, and centrifuged at 1200 rpm for 1 min.
结果如图1、图2和图3所示。从图中可以看出,使用氟化油会比使用硅油或者矿物油液滴稳定,破裂和融合少,以氟化油作为油相与水相制备得到的微滴大小更加均匀,因此初步选择氟化油作为微滴式数字PCR的油相。The results are shown in Figures 1, 2 and 3. It can be seen from the figure that the use of fluorinated oil is more stable than the use of silicone oil or mineral oil droplets, with less rupture and fusion, and the size of the droplets prepared by using fluorinated oil as the oil phase and the water phase is more uniform, so fluorine is initially selected. The carburetor serves as the oil phase for droplet digital PCR.
试验例2Test Example 2
油确定后,从离子型表面活性剂、非离子型表面活性剂和双子表面活性剂中对适用于微滴式数字PCR用表面活性剂进行筛选。其中,油相的制备方法为:将表面活性剂溶解于氟化油中摇匀,使其充分溶解混匀。After the oil was identified, the surfactants suitable for use in droplet digital PCR were screened from ionic surfactants, nonionic surfactants and gemini surfactants. Wherein, the preparation method of the oil phase is as follows: the surfactant is dissolved in the fluorinated oil and shaken, so that it is fully dissolved and mixed.
分别以实施例1-3和对比例1-5提供的油相组合物作为油相,按照试验例1的方法与水相(水相与试验例1相同)混合制备微滴,结果如图4-图 11所示。The oil phase compositions provided in Examples 1-3 and Comparative Examples 1-5 were used as the oil phase, and the microdroplets were prepared by mixing with the water phase (the water phase was the same as in Test Example 1) according to the method of Test Example 1. The results are shown in Figure 4 - As shown in Figure 11.
从图中可以看出,使用双子表面活性剂PFPE-PEG-PFPE会比使用离子型表面活性剂或者非离子型表面活性剂液滴更稳定,破裂和融合更少。进行浓度优化发现氟化油95份和双子表面活性剂5份,即可生成稳定均一的液滴。As can be seen from the figure, the use of the gemini surfactant PFPE-PEG-PFPE is more stable than the use of ionic or nonionic surfactant droplets, with less breakup and fusion. Concentration optimization found that 95 parts of fluorinated oil and 5 parts of gemini surfactant can generate stable and uniform droplets.
试验例3Test Example 3
分别以实施例4-6和对比例6-8提供的组合物进行微滴式数字PCR,步骤如下:Droplet digital PCR was carried out with the compositions provided in Examples 4-6 and Comparative Examples 6-8, and the steps were as follows:
PCR预混液:包括热启动Taq酶、MgCl2、KCl、Tris-HCl、BSA、dNTP、 PEG2000、甜菜碱、DMSO、甘油、鱼精DNA、Proclin-300。PCR master mix: including hot-start Taq enzyme, MgCl 2 , KCl, Tris-HCl, BSA, dNTP, PEG2000, betaine, DMSO, glycerol, protamine DNA, Proclin-300.
水相配制:在PCR预混液中加入质粒模板、引物对和探针。Aqueous phase preparation: Add plasmid template, primer pair and probe to PCR master mix.
先将20μL油相加入到芯片中,1200rpm,1min离心,随后将10μL水相加入到芯片中,1200rpm,1min离心。加样孔用透气膜封住。First, 20 μL of the oil phase was added to the chip, centrifuged at 1200 rpm for 1 min, and then 10 μL of the aqueous phase was added to the chip, and centrifuged at 1200 rpm for 1 min. The sample hole is sealed with a breathable film.
将生成微滴的芯片放入PCR仪中进行扩增。The microdroplet-generating chip is placed in a PCR machine for amplification.
使用芯片读取仪对扩增反应后的芯片进行读取和拍照。结果如图12- 图18所示。Use a chip reader to read and photograph the chip after the amplification reaction. The results are shown in Figures 12-18.
从图中可以看出,相较于实施例4提供的组合物,对比例7和对比例8 提供的组合物制备得到的微滴大小不均匀,液滴发生大面积破裂或者融合现象,说明甜菜碱和PEG2000与本发明其他水相组分存在配合作用,有助于制备得到大小均一稳定的微滴;相较于对比例6,本发明经过优化后的 PCR预混液与油相更适配,液滴均一性好,液滴稳定,扩增准确,扩增效率高。It can be seen from the figure that, compared with the composition provided in Example 4, the size of the microdroplets prepared by the compositions provided in Comparative Examples 7 and 8 is not uniform, and the droplets are ruptured or fused in a large area, indicating that the sugar beet Alkali and PEG2000 cooperate with other water phase components of the present invention, which helps to prepare droplets of uniform and stable size; compared with Comparative Example 6, the optimized PCR premix of the present invention is more suitable for the oil phase, The droplet uniformity is good, the droplet is stable, the amplification is accurate, and the amplification efficiency is high.
最后应说明的是:以上各实施例仅用以说明本发明的技术方案,而非对其限制;尽管参照前述各实施例对本发明进行了详细的说明,本领域的普通技术人员应当理解:其依然可以对前述各实施例所记载的技术方案进行修改,或者对其中部分或者全部技术特征进行等同替换;而这些修改或者替换,并不使相应技术方案的本质脱离本发明各实施例技术方案的范围。Finally, it should be noted that the above embodiments are only used to illustrate the technical solutions of the present invention, but not to limit them; although the present invention has been described in detail with reference to the foregoing embodiments, those of ordinary skill in the art should understand that: The technical solutions described in the foregoing embodiments can still be modified, or some or all of the technical features thereof can be equivalently replaced; and these modifications or replacements do not make the essence of the corresponding technical solutions deviate from the technical solutions of the embodiments of the present invention. scope.
SEQUENCE LISTINGSEQUENCE LISTING
<110> 杭州博日科技股份有限公司<110> Hangzhou Bioer Technology Co., Ltd.
<120> 微滴式数字PCR油相组合物、微滴式数字PCR组合物及其应用和试剂盒<120> Droplet digital PCR oil phase composition, droplet digital PCR composition and its application and kit
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<170> PatentIn version 3.5<170> PatentIn version 3.5
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ttcttgttat ccaaatgatg gtaaagtgga atgcgtgtgt agagacaact ggacgggaac 120ttcttgttat ccaaatgatg gtaaagtgga atgcgtgtgt agagacaact ggacgggaac 120
taacaggcct gtgctagtta tttcgcctga tctctcttac agggttgggt atttatgtgc 180taacaggcct gtgctagtta tttcgcctga tctctcttac agggttgggt atttatgtgc 180
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Cited By (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN110218777A (en) * | 2019-06-14 | 2019-09-10 | 苏州叠代生物科技有限公司 | PCR premixed liquid |
CN118272569A (en) * | 2024-05-07 | 2024-07-02 | 中国计量科学研究院 | Quantitative PCR kit for wheat bunt pathogen and its detection method |
WO2025040497A1 (en) * | 2023-08-18 | 2025-02-27 | Qiagen Gmbh | Method for improving nucleic acid processing |
Citations (6)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2010036352A1 (en) * | 2008-09-23 | 2010-04-01 | Quantalife, Inc | Droplet-based assay system |
CN108441541A (en) * | 2013-03-08 | 2018-08-24 | 伯乐生命医学产品有限公司 | Composition, the method and system measured for polymerase chain reaction |
CN109136342A (en) * | 2017-06-19 | 2019-01-04 | 广东顺德工业设计研究院(广东顺德创新设计研究院) | Droplet type digital pcr sonde method reaction system, detection method and application |
WO2019077114A1 (en) * | 2017-10-20 | 2019-04-25 | Stilla Technologies | Emulsions with improved stability |
CN110042152A (en) * | 2019-05-20 | 2019-07-23 | 北京达微生物科技有限公司 | PCR increased response agent composition, droplet type digital pcr reaction solution and its application |
CN110218777A (en) * | 2019-06-14 | 2019-09-10 | 苏州叠代生物科技有限公司 | PCR premixed liquid |
-
2022
- 2022-06-30 CN CN202210771786.1A patent/CN114941023A/en active Pending
Patent Citations (6)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2010036352A1 (en) * | 2008-09-23 | 2010-04-01 | Quantalife, Inc | Droplet-based assay system |
CN108441541A (en) * | 2013-03-08 | 2018-08-24 | 伯乐生命医学产品有限公司 | Composition, the method and system measured for polymerase chain reaction |
CN109136342A (en) * | 2017-06-19 | 2019-01-04 | 广东顺德工业设计研究院(广东顺德创新设计研究院) | Droplet type digital pcr sonde method reaction system, detection method and application |
WO2019077114A1 (en) * | 2017-10-20 | 2019-04-25 | Stilla Technologies | Emulsions with improved stability |
CN110042152A (en) * | 2019-05-20 | 2019-07-23 | 北京达微生物科技有限公司 | PCR increased response agent composition, droplet type digital pcr reaction solution and its application |
CN110218777A (en) * | 2019-06-14 | 2019-09-10 | 苏州叠代生物科技有限公司 | PCR premixed liquid |
Cited By (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN110218777A (en) * | 2019-06-14 | 2019-09-10 | 苏州叠代生物科技有限公司 | PCR premixed liquid |
WO2025040497A1 (en) * | 2023-08-18 | 2025-02-27 | Qiagen Gmbh | Method for improving nucleic acid processing |
CN118272569A (en) * | 2024-05-07 | 2024-07-02 | 中国计量科学研究院 | Quantitative PCR kit for wheat bunt pathogen and its detection method |
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