CN114525342A - Application of LINC02806 in diagnosis and treatment of hepatocellular carcinoma - Google Patents
Application of LINC02806 in diagnosis and treatment of hepatocellular carcinoma Download PDFInfo
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- CN114525342A CN114525342A CN202210201309.1A CN202210201309A CN114525342A CN 114525342 A CN114525342 A CN 114525342A CN 202210201309 A CN202210201309 A CN 202210201309A CN 114525342 A CN114525342 A CN 114525342A
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Abstract
本发明公开了一种用于肝癌诊疗的生物标志物,具体的该标志物为LINC02806。本发明首次发现LINC02806的差异表达与肝癌的发生发展相关,在肝癌患者中,LINC02806的表达上调,提示干预LINC02806基因表达可能成为肝癌治疗的新途径。为了进一步验证,通过抑制剂降低LINC02806的表达发现可以显著降低肝癌细胞的增殖和细胞形成克隆集落数。
The invention discloses a biological marker for diagnosis and treatment of liver cancer, and the specific marker is LINC02806. The present invention finds for the first time that the differential expression of LINC02806 is related to the occurrence and development of liver cancer. In liver cancer patients, the expression of LINC02806 is up-regulated, suggesting that interfering with LINC02806 gene expression may become a new approach for liver cancer treatment. For further verification, it was found that reducing the expression of LINC02806 by an inhibitor could significantly reduce the proliferation of hepatoma cells and the number of colonies formed by the cells.
Description
技术领域technical field
本发明涉及生物医药技术领域,特别涉及LINC02806在肝细胞癌诊断和治疗中的应用。The invention relates to the technical field of biomedicine, in particular to the application of LINC02806 in the diagnosis and treatment of hepatocellular carcinoma.
背景技术Background technique
肝癌是全球癌症死亡的最大主要原因之一,特别是在中国,肝癌由于肝炎病毒的高感染率已成为最常见的癌症之一。在原发性肝癌中,肝细胞癌是最常见的类型。乙型肝炎病毒和丙型肝炎病毒感染仍然是肝细胞癌发病的主要原因。由于晚期诊断和有限的治疗选择,肝癌患者预后不良,在全球范围内发病率呈上升趋势。未接受治疗的晚期肝癌患者的中位生存期仅为7.1个月。即使在治疗后,肿瘤复发也是一个问题。例如,复发发生在近70%的患者术后5年,降低了患者的生存率。因此,迫切需要阐明肝癌进展的分子发病机制,确定最佳的诊断和治疗策略,从而有助于开发新的诊断标志物和治疗靶点,在临床上提高治疗效率和预后。Liver cancer is one of the largest leading causes of cancer deaths worldwide, especially in China, where liver cancer has become one of the most common cancers due to the high infection rate of hepatitis virus. Among primary liver cancers, hepatocellular carcinoma is the most common type. Hepatitis B virus and hepatitis C virus infection remains the leading cause of hepatocellular carcinoma. Due to late diagnosis and limited treatment options, patients with liver cancer have a poor prognosis and the incidence is on the rise globally. The median survival of patients with advanced liver cancer who did not receive treatment was only 7.1 months. Tumor recurrence is a problem even after treatment. For example, recurrence occurred 5 years after surgery in nearly 70% of patients, reducing patient survival. Therefore, there is an urgent need to elucidate the molecular pathogenesis of HCC progression and to identify optimal diagnostic and therapeutic strategies, thereby contributing to the development of new diagnostic markers and therapeutic targets to improve treatment efficiency and prognosis clinically.
lncRNA是非开放阅读框的RNA分子,长度>200个核苷酸。尽管lncRNA没有蛋白质编码能力,但它们在表观遗传学和调节基因表达方面很重要。大量研究已经证实lncRNA参与大脑发育、胚胎发育、组织分化和器官发生。近年来已经看到lncRNA在包括肝癌在内的多种人类疾病中的关键作用。例如,lncRNA MAGI2-AS3可能对肝癌有保护作用,lncRNA-HIS被认为促进了HCC的发生增殖和转移,以及lncRNA-DUXAP10通过microRNA-1914起到抑制肝癌细胞增殖的作用。这意味着lncRNA可能成为潜在有效的肝癌诊断和治疗生物标志物。LncRNAs are RNA molecules that are not open reading frames, >200 nucleotides in length. Although lncRNAs have no protein-coding capacity, they are important in epigenetics and regulation of gene expression. Numerous studies have confirmed that lncRNAs are involved in brain development, embryonic development, tissue differentiation and organogenesis. Key roles of lncRNAs in a variety of human diseases including liver cancer have been seen in recent years. For example, lncRNA MAGI2-AS3 may have a protective effect on liver cancer, lncRNA-HIS is thought to promote the occurrence, proliferation and metastasis of HCC, and lncRNA-DUXAP10 plays a role in inhibiting the proliferation of liver cancer cells through microRNA-1914. This means that lncRNAs may become potentially effective biomarkers for liver cancer diagnosis and treatment.
目前lncRNA在肝癌中的调控分子机制仍处于探索阶段,还有很多未知的lncRNA在肝癌中的作用需要研究,对肝癌的诊断、预后和预测具有重要作用,并为肝癌的靶向治疗提供有效治疗靶点。At present, the regulatory molecular mechanism of lncRNAs in liver cancer is still in the exploratory stage. There are still many unknown lncRNAs in liver cancer that need to be studied. They play an important role in the diagnosis, prognosis and prediction of liver cancer, and provide effective treatment for targeted therapy of liver cancer. target.
发明内容SUMMARY OF THE INVENTION
为了弥补现有技术的不足,本发明的目的之一,提供一种诊断早期肝癌的产品,使患者在早期就得以治疗,进而提高生存率和生活质量。In order to make up for the deficiencies of the prior art, one of the purposes of the present invention is to provide a product for diagnosing early stage liver cancer, so that patients can be treated at an early stage, thereby improving the survival rate and quality of life.
本发明的目的之二,提供一种治疗手段和药物组合物,实现肝癌的精准分子治疗。The second objective of the present invention is to provide a therapeutic method and a pharmaceutical composition to achieve precise molecular therapy of liver cancer.
本发明的目的之三,提供一种筛选预防或治疗肝癌待筛选物质的方法。The third object of the present invention is to provide a method for screening substances to be screened for the prevention or treatment of liver cancer.
为了实现上述目的,本发明采用如下技术方案:In order to achieve the above object, the present invention adopts the following technical solutions:
本发明提供了检测LINC02806的试剂在制备诊断肝癌的产品中的应用。The invention provides the application of a reagent for detecting LINC02806 in the preparation of a product for diagnosing liver cancer.
所述试剂包括用RT-PCR、实时定量PCR、原位杂交、northern blotting、芯片或高通量测序平台检测LINC02806表达水平的试剂。The reagents include reagents for detecting the expression level of LINC02806 by RT-PCR, real-time quantitative PCR, in situ hybridization, northern blotting, chips or high-throughput sequencing platforms.
进一步,用实时定量PCR检测LINC02806的试剂至少包括一对特异性扩增LINC02806的引物。Further, the reagent for detecting LINC02806 by real-time quantitative PCR includes at least a pair of primers for specifically amplifying LINC02806.
进一步地,所述试剂包括:Further, the reagent includes:
特异性识别LINC02806的探针;或A probe that specifically recognizes LINC02806; or
特异性扩增LINC02806的引物。Primers that specifically amplify LINC02806.
进一步地,所述特异性扩增LINC02806的引物序列如SEQ ID NO.1和SEQ ID NO.2所示。Further, the primer sequences for specific amplification of LINC02806 are shown in SEQ ID NO.1 and SEQ ID NO.2.
本发明提供了一种诊断肝癌的产品,所述产品包括检测样本中LINC02806表达水平的试剂。The present invention provides a product for diagnosing liver cancer, the product comprising a reagent for detecting the expression level of LINC02806 in a sample.
所述产品包括芯片、制剂或试剂盒。其中,所述芯片包括固相载体以及固定在固相载体的寡核苷酸探针,所述寡核苷酸探针包括用于检测LINC02806转录水平的针对LINC02806的寡核苷酸探针;所述试剂盒包括用于检测LINC02806转录水平的引物或芯片。The products include chips, preparations or kits. Wherein, the chip includes a solid-phase carrier and an oligonucleotide probe immobilized on the solid-phase carrier, and the oligonucleotide probe includes an oligonucleotide probe for LINC02806 for detecting the transcription level of LINC02806; The kit includes primers or chips for detecting the transcription level of LINC02806.
固相载体可采用基因芯片领域的各种常用材料,例如但不限于尼龙膜,经活性基团(如醛基、氨基等)修饰的玻片或硅片、未修饰的玻片、塑料片等。The solid phase carrier can be made of various materials commonly used in the field of gene chips, such as but not limited to nylon membranes, glass slides or silicon wafers modified with active groups (such as aldehyde groups, amino groups, etc.), unmodified glass slides, plastic slides, etc. .
本发明中基因检测试剂盒或基因芯片可用于检测包括LINC02806基因在内的多个基因(例如,与肝癌相关的多个基因)的表达水平,将肝癌的多个标志物同时进行检测,可大大提高肝癌诊断的准确率。The gene detection kit or gene chip of the present invention can be used to detect the expression levels of multiple genes (for example, multiple genes related to liver cancer) including the LINC02806 gene. Improve the accuracy of liver cancer diagnosis.
进一步,所述检测样本中LINC02806的水平的试剂包括:Further, the reagents for detecting the level of LINC02806 in the sample include:
特异性识别LINC02806的探针;或A probe that specifically recognizes LINC02806; or
特异性扩增LINC02806的引物。Primers that specifically amplify LINC02806.
进一步,特异性扩增LINC02806的引物序列如SEQ ID NO.1和SEQ ID NO.2所示。Further, the primer sequences for specific amplification of LINC02806 are shown in SEQ ID NO.1 and SEQ ID NO.2.
本发明提供了LINC02806在制备治疗肝癌的药物组合物中的应用。The invention provides the application of LINC02806 in preparing a pharmaceutical composition for treating liver cancer.
进一步地,所述的药物组合物包括LINC02806的抑制剂,和/或与所述抑制剂配伍的其他药类以及药学上可接受的载体和/或辅料,所述抑制剂能够抑制LINC02806或涉及LINC02806上游或下游途径的物质的表达。Further, the pharmaceutical composition includes an inhibitor of LINC02806, and/or other drugs compatible with the inhibitor and pharmaceutically acceptable carriers and/or excipients, the inhibitor can inhibit LINC02806 or involve LINC02806 Expression of substances of upstream or downstream pathways.
进一步地,所述抑制剂为针对LINC02806的siRNA。Further, the inhibitor is siRNA against LINC02806.
本发明在筛选有效的siRNA序列时,通过大量的比对分析,从而找出最佳的有效片段。在本发明的具体实施方式中,发明人设计合成了多种siRNA序列,并将它们分别通过转染试剂转染肝癌细胞系进行验证,结果检测出干扰效果较好的干扰分子,它们分别具有SEQID NO.9、SEQ ID NO.10所示的序列,进一步地在细胞水平实验,结果证明对于细胞实验而言抑制效率非常高。When screening effective siRNA sequences, the present invention finds out the best effective fragments through a large number of alignment analysis. In a specific embodiment of the present invention, the inventors designed and synthesized a variety of siRNA sequences, and verified them by transfecting liver cancer cell lines with transfection reagents. As a result, interference molecules with better interference effect were detected, and they have SEQID The sequences shown in NO.9 and SEQ ID NO.10 were further tested at the cellular level, and the results showed that the inhibition efficiency was very high for cellular experiments.
本发明的核酸抑制物如siRNA可以化学合成,也可以通过一个重组核酸结构里的表达盒转录成单链RNA之后进行制备。siRNA等核酸抑制物,可通过采用适当的转染试剂被输送到细胞内,或还可采用本领域已知的多种技术被输送到细胞内。The nucleic acid inhibitors of the present invention, such as siRNA, can be chemically synthesized or prepared by transcribing into single-stranded RNA from an expression cassette in a recombinant nucleic acid construct. Nucleic acid inhibitors, such as siRNA, can be delivered into cells using appropriate transfection reagents, or can also be delivered into cells using a variety of techniques known in the art.
本领域技术人员将认识到,本发明的实用性并不局限于对本发明的标志物基因的任何特定变体的基因表达进行定量。在具体的实施方案中,作为非限制性的实例,标志物基因LINC02806具有目前国际公共核酸序列数据库GeneBank中LINC02806基因(NC_000001.11)所示的序列。Those skilled in the art will recognize that the utility of the present invention is not limited to quantifying the gene expression of any particular variant of the marker genes of the present invention. In a specific embodiment, as a non-limiting example, the marker gene LINC02806 has the sequence shown in the LINC02806 gene (NC_000001.11) currently in the international public nucleic acid sequence database GeneBank.
在本发明中,术语“探针”指能与另一分子的特定序列或亚序列或其它部分结合的分子。除非另有指出,术语“探针”通常指能通过互补碱基配对与另一多核苷酸(往往称为“靶多核苷酸”)结合的多核苷酸探针。根据杂交条件的严谨性,探针能和与该探针缺乏完全序列互补性的靶多核苷酸结合。探针可作直接或间接的标记,其范围包括引物。杂交方式,包括,但不限于:溶液相、固相、混合相或原位杂交测定法。In the present invention, the term "probe" refers to a molecule capable of binding to a specific sequence or subsequence or other portion of another molecule. Unless otherwise indicated, the term "probe" generally refers to a polynucleotide probe capable of binding to another polynucleotide (often referred to as a "target polynucleotide") by complementary base pairing. Depending on the stringency of the hybridization conditions, a probe can bind to a target polynucleotide that lacks complete sequence complementarity to the probe. Probes can be labeled, either directly or indirectly, to include primers. Hybridization means, including, but not limited to, solution phase, solid phase, mixed phase, or in situ hybridization assays.
在本发明中,药学上可接受的载体包括(但并不限于):稀释剂、赋形剂如乳糖、氯化钠、葡萄糖、尿素、淀粉、水等、填充剂如淀粉、蔗糖等;粘合剂如单糖浆、葡萄糖溶液、淀粉溶液、纤维素衍生物、藻酸盐、明胶和聚乙烯吡咯烷酮;湿润剂如甘油;崩解剂如干淀粉、海藻酸钠、海带多糖粉末、琼脂粉末、碳酸钙和碳酸氢钠;吸收促进剂季铵化合物、十二烷基硫酸钠等;表面活性剂如聚氧化乙烯山梨聚糖脂肪酸酯、十二烷基硫酸钠、硬脂酸单甘油酯、十六烷醇等;致湿剂如甘油、淀粉等;吸附载体如淀粉、乳糖、斑脱土、硅胶、高岭土和皂粘土等;润滑剂如滑石粉、硬脂酸钙和镁、聚乙二醇、硼酸粉末等。In the present invention, pharmaceutically acceptable carriers include (but are not limited to): diluents, excipients such as lactose, sodium chloride, glucose, urea, starch, water, etc., fillers such as starch, sucrose, etc.; Mixtures such as simple syrup, glucose solution, starch solution, cellulose derivatives, alginate, gelatin and polyvinylpyrrolidone; wetting agents such as glycerol; disintegrating agents such as dry starch, sodium alginate, laminarin powder, agar powder, Calcium carbonate and sodium bicarbonate; absorption enhancers quaternary ammonium compounds, sodium lauryl sulfate, etc.; surfactants such as polyoxyethylene sorbitan fatty acid ester, sodium lauryl sulfate, stearic acid monoglyceride, Cetyl alcohol, etc.; humectants such as glycerol, starch, etc.; adsorption carriers such as starch, lactose, bentonite, silica gel, kaolin and bentonite, etc.; lubricants such as talc, calcium and magnesium stearate, polyethylene glycol Alcohol, boric acid powder, etc.
在本发明中,药物组合物可以使用不同的添加剂进行制备,例如缓冲剂、稳定剂、抑菌剂、等渗剂、螯合剂、pH控制剂及表面活性剂。In the present invention, pharmaceutical compositions can be prepared using various additives, such as buffers, stabilizers, bacteriostatic agents, isotonic agents, chelating agents, pH control agents and surfactants.
本发明所述的药物组合物可口服给药、非胃肠道给药、通过吸入喷雾给药、局部给药、直肠给药、鼻给药、颊给药、阴道给药或通过植入的贮药装置给药。优选口服给药或注射给药。本发明的药物组合物可含有任何常用的无毒可药用载体、辅料或赋形剂。在某些情况下,药用酸、碱或缓冲剂可用来调节制剂的pH以提高所配制的化合物或其给药剂型的稳定性。本发明所用术语非胃肠道包括皮下、皮内、静脉内、肌内、关节内、动脉内、滑膜内、胸骨内、鞠内、损伤部位内、和颅内注射或输注技术。只要能达到目标组织,本发明所述药物组合物可以通过任何途径给予受体。The pharmaceutical compositions of the present invention may be administered orally, parenterally, by inhalation spray, topically, rectally, nasally, bucally, vaginally or by implanted Reservoir for drug delivery. Oral administration or injection administration is preferred. The pharmaceutical composition of the present invention may contain any commonly used non-toxic pharmaceutically acceptable carriers, adjuvants or excipients. In certain instances, pharmaceutically acceptable acids, bases or buffers can be used to adjust the pH of the formulation to increase the stability of the formulated compound or its administered dosage form. The term parenteral as used herein includes subcutaneous, intradermal, intravenous, intramuscular, intraarticular, intraarterial, intrasynovial, intrasternal, intramarinal, intralesional, and intracranial injection or infusion techniques. As long as the target tissue can be reached, the pharmaceutical composition of the present invention can be administered to the recipient by any route.
本发明药物组合物可以以任何口服剂型的形式口服给药,包括但不限于胶囊、片剂、乳剂和水悬浮液、分散剂和溶液。对于口服片剂,常用载体包括乳糖和玉米淀粉。一般还加入润滑剂例如硬脂酸镁。为了以胶囊形式口服给药,适用的稀释剂包括乳糖和无水玉米淀粉。当口服施用水悬浮液和/或乳液时,可将活性组分悬浮或溶解在油相中,并与乳化剂和/或悬浮剂合并。如果需要的话,可加入一些甜味剂和/或矫味剂和/或着色剂。适当时,可将用于口服给药的剂量单位制剂包微囊。例如,通过在聚合物、蜡等中将颗粒物质包衣或包埋,也可制备所述制剂已延长或维持释放。本发明的药物组合物可以用于降低内源性的LINC02806过表达,通过降低LINC02806的表达,从而治疗因LINC02806表上调导致的肝癌。The pharmaceutical compositions of the present invention may be administered orally in any oral dosage form including, but not limited to, capsules, tablets, emulsions and aqueous suspensions, dispersions and solutions. For oral tablets, common carriers include lactose and cornstarch. A lubricant such as magnesium stearate is also typically added. For oral administration in capsule form, suitable diluents include lactose and anhydrous cornstarch. When aqueous suspensions and/or emulsions are administered orally, the active component can be suspended or dissolved in an oily phase and combined with emulsifying and/or suspending agents. If desired, some sweetening and/or flavoring and/or coloring agents may be added. Dosage unit formulations for oral administration may be microencapsulated, as appropriate. The formulations may also be prepared for prolonged or sustained release, for example, by coating or entrapping particulate material in polymers, waxes, and the like. The pharmaceutical composition of the present invention can be used to reduce the overexpression of endogenous LINC02806, and by reducing the expression of LINC02806, the liver cancer caused by the up-regulation of LINC02806 expression can be treated.
在本发明中,可将抑制LINC02806表达的化合物作为裸RNA与递送试剂一起作为核酸(如重组质粒或病毒载体)给受试者施用,所述核酸包含抑制LINC02806表达的序列。递送试剂可以是亲脂试剂、聚阳离子、脂质体等。In the present invention, a compound that inhibits LINC02806 expression can be administered to a subject as naked RNA along with a delivery agent as a nucleic acid (eg, a recombinant plasmid or viral vector) comprising a sequence that inhibits LINC02806 expression. Delivery agents can be lipophilic agents, polycations, liposomes, and the like.
本发明的药物组合物可进一步包含一种或多种抗癌剂。在具体的实施方案中,药物组合物包含至少一种抑制LINC02806基因表达的化合物和至少一种化疗剂。用于本发明的化疗剂,包括但不限于:微管激活剂、烷化剂、抗赘生抗代谢物、铂类化合物、DNA-烷化剂,抗肿瘤抗生素剂,抗代谢剂,微管蛋白稳定剂,微管蛋白去稳定剂,激素拮抗剂,拓扑异构酶抑制剂,蛋白激酶抑制剂,HMG-COA抑制剂,CDK抑制剂,细胞周期蛋白抑制剂,胱天蛋白酶抑制剂,金属蛋白酶抑制剂,反义核酸,三链螺旋DNA,核酸适体,和分子修饰的病毒、细菌和外毒素试剂。The pharmaceutical compositions of the present invention may further comprise one or more anticancer agents. In a specific embodiment, the pharmaceutical composition comprises at least one compound that inhibits LINC02806 gene expression and at least one chemotherapeutic agent. The chemotherapeutic agents used in the present invention include, but are not limited to: microtubule activators, alkylating agents, antineoplastic antimetabolites, platinum compounds, DNA-alkylating agents, antitumor antibiotics, antimetabolites, microtubules Protein Stabilizers, Tubulin Destabilizers, Hormone Antagonists, Topoisomerase Inhibitors, Protein Kinase Inhibitors, HMG-COA Inhibitors, CDK Inhibitors, Cyclin Inhibitors, Caspase Inhibitors, Metals Protease inhibitors, antisense nucleic acids, triple helix DNA, nucleic acid aptamers, and molecularly modified viral, bacterial and exotoxin reagents.
本发明的药物还可与其他治疗肝癌的药物联用,其他治疗性化合物可以与主要的活性成分同时给药,甚至在同一组合物中同时给药。还可以以单独的组合物或与主要的活性成分不同的剂量形式单独给予其它治疗性化合物。主要成分的部分剂量可以与其它治疗性化合物同时给药,而其它剂量可以单独给药。在治疗过程中,可以根据症状的严重程度、复发的频率和治疗方案的生理应答,调整本发明药物组合物的剂量。The medicament of the present invention can also be used in combination with other medicaments for the treatment of liver cancer, and other therapeutic compounds can be administered simultaneously with the main active ingredients, even in the same composition. The other therapeutic compounds may also be administered alone in separate compositions or in dosage forms other than the main active ingredient. Partial doses of the principal ingredient may be administered concurrently with other therapeutic compounds, while other doses may be administered alone. During the course of treatment, the dosage of the pharmaceutical composition of the present invention can be adjusted according to the severity of symptoms, the frequency of recurrence and the physiological response of the treatment regimen.
本发明药物组合物可以局部给药的药物组合物,可以配制成软膏、乳膏剂、混悬剂、洗剂、散剂、溶液剂、糊剂、凝胶剂、喷雾剂、气雾剂或油剂。The pharmaceutical compositions of the present invention can be administered locally, and can be formulated into ointments, creams, suspensions, lotions, powders, solutions, pastes, gels, sprays, aerosols or oils .
本发明的药物组合物可以按药剂学上有效的量进行给药,本发明的用语“药剂学上有效的量”指的是以可适用于医学治疗或预防的合理的受惠/危险比率足以治疗或预防疾病的量,可根据包括疾病的严重程度、药物的活性、患者的年龄、体重、健康、性别、患者对药物的敏感度、所使用的本发明组合物的给药时间、给药途径及排出比率、治疗时间、与所使用的本发明的组合物配合或同时使用的药物的要素及其它医学领域中公知的要素来决定有效用量水平。本发明的药物组合物可作为单独的治疗剂进行给药,或是与其它治疗剂并用地进行给药,可以与以往的治疗剂依次地或同时地进行给药。此外,可单次或多次地进行给药。重要的是,需要对上述要素均加以考虑,并且以无副作用的最少的量可取得最大效果的量进行给药。The pharmaceutical compositions of the present invention may be administered in a pharmaceutically effective amount, the term "pharmaceutically effective amount" as used herein refers to a reasonable benefit/risk ratio sufficient for use in medical treatment or prevention The amount to treat or prevent the disease may depend on factors including the severity of the disease, the activity of the drug, the patient's age, weight, health, sex, the sensitivity of the patient to the drug, the time of administration of the composition of the present invention used, and the time of administration. The route and rate of excretion, duration of treatment, elements of the drug used in combination with or concomitantly with the composition of the present invention, and other elements well known in the medical arts determine the effective dosage level. The pharmaceutical composition of the present invention may be administered as a single therapeutic agent, or in combination with other therapeutic agents, and may be administered sequentially or simultaneously with conventional therapeutic agents. In addition, single or multiple administrations may be performed. It is important to take all of the above elements into consideration and to administer the least amount without side effects to achieve the greatest effect.
术语“治疗”是指不以治愈为目的,而是减缓(减少)靶定的病理状况或病症或防止复发。如果接受治疗有效量的治疗剂之后,患者成功地被“治疗”,患者显示出可观测到的和/或可度量的一种或多种特定疾病的迹象和症状的减少或消失。例如,癌细胞数目显著减少或癌细胞消失,减少肿瘤尺寸;抑制(即,在某种程度上减缓,及优选地停止)肿瘤转移;某种程度上抑制肿瘤生长;使在一定程度上减少和/或减轻与特定癌症相关联的一种或多种症状的时间增加;减少的发病率和死亡率,以及改善生活质量。疾病的迹象或症状的减轻能够为患者感知。治疗可以实现完全反应—定义为癌症的所有迹象消失,或部分反应—肿瘤尺寸减小,优选减小的比例超过50%、更优选75%。如果患者感受到疾病稳定,患者也被视为得到治疗。The term "treating" refers not to cure, but to slow (reduce) a targeted pathological condition or disorder or prevent recurrence. If a patient is successfully "treated" after receiving a therapeutically effective amount of a therapeutic agent, the patient exhibits an observable and/or measurable reduction or disappearance of one or more signs and symptoms of a particular disease. For example, a significant reduction in the number of cancer cells or disappearance of cancer cells, reducing tumor size; inhibiting (ie, slowing to some extent, and preferably stopping) tumor metastasis; inhibiting tumor growth to some extent; Increased time to relief of one or more symptoms associated with a particular cancer; reduced morbidity and mortality, and improved quality of life. A reduction in the signs or symptoms of the disease can be perceived by the patient. Treatment can achieve a complete response - defined as the disappearance of all signs of cancer, or a partial response - a reduction in tumor size, preferably by a ratio of more than 50%, more preferably 75%. Patients are also considered treated if they feel their disease is stable.
在本发明中,术语“样本”包括(但不限于)细胞、组织、脏器、体液(血液、淋巴液等)、消化液、咳痰、肺胞支气管清洗液、尿、粪便等。优选的,所述样本为组织、血液。In the present invention, the term "sample" includes (but is not limited to) cells, tissues, organs, body fluids (blood, lymph, etc.), digestive juices, expectoration, lung bronchial washes, urine, feces, and the like. Preferably, the sample is tissue or blood.
本发明还提供了LINC02806在筛选预防或治疗肝癌的待筛选物质中的应用。The present invention also provides the application of LINC02806 in screening substances to be screened for preventing or treating liver cancer.
进一步,所述的筛选预防或治疗肝癌的待筛选物质的步骤包括:Further, the step of screening substances to be screened for preventing or treating liver cancer includes:
待筛选物质处理表达或含有LINC02806基因的体系;和The substance to be screened treats a system expressing or containing the LINC02806 gene; and
检测所述体系中LINC02806基因的表达;detecting the expression of the LINC02806 gene in the system;
其中,若所述待筛选物质可降低LINC02806基因的表达或活性(优选显著降低,如低20%以上,较佳的低50%以上,更佳的低80%以上),则表明该待筛选物质是预防或治疗肝癌的待筛选物质。Wherein, if the substance to be screened can reduce the expression or activity of the LINC02806 gene (preferably significantly reduced, such as lower than 20%, preferably lower than 50%, more preferably lower than 80%), it indicates that the substance to be screened It is a substance to be screened for the prevention or treatment of liver cancer.
进一步,上面所述的体系包括(但不限于):细胞体系、亚细胞体系、溶液体系、组织体系、器官体系或动物体系。Further, the above-mentioned systems include (but are not limited to): cellular systems, subcellular systems, solution systems, tissue systems, organ systems or animal systems.
与现有技术相比,本发明提供了一种诊断早期肝癌的产品,使患者在早期就得以治疗,进而提高生存率和生活治疗。本发明还提供一种治疗手段和药物组合物,实现肝癌的精准分子治疗。本发明提供一种筛选预防或治疗肝癌待筛选物质的方法,对肝癌的诊断、预后和预测具有重要作用。Compared with the prior art, the present invention provides a product for diagnosing early stage liver cancer, so that patients can be treated at an early stage, thereby improving the survival rate and life treatment. The present invention also provides a treatment method and a pharmaceutical composition to achieve precise molecular treatment of liver cancer. The present invention provides a method for screening substances to be screened for prevention or treatment of liver cancer, which plays an important role in the diagnosis, prognosis and prediction of liver cancer.
附图说明Description of drawings
图1示利用QPCR检测LINC02806在肝癌患者中的表达情况图;Figure 1 shows the expression of LINC02806 in patients with liver cancer detected by QPCR;
图2示利用QPCR检测LINC02806在肝癌细胞中的表达情况图;Figure 2 shows the expression of LINC02806 in liver cancer cells detected by QPCR;
图3是利用QPCR检测转染siRNA对在HepG2肝癌细胞中LINC02806的表达影响图;Figure 3 is a graph showing the effect of transfected siRNA on the expression of LINC02806 in HepG2 hepatoma cells using QPCR;
图4是是利用CCK8检测LINC02806对HepG2肝癌细胞增殖的影响图。Figure 4 is a graph showing the effect of LINC02806 on the proliferation of HepG2 hepatoma cells using CCK8.
具体实施方式Detailed ways
下面结合附图和实施例对本发明作进一步详细的说明。以下实施例仅用于说明本发明而不用于限制本发明的范围。实施例中未注明具体条件的实验方法,通常按照常规条件,例如Sambrook等人,分子克隆:实验室手册(New York:Cold Spring HarborLaboratoryPress,1989)中所述的条件,或按照制造厂商所建议的条件。The present invention will be described in further detail below with reference to the accompanying drawings and embodiments. The following examples are only used to illustrate the present invention and not to limit the scope of the present invention. The experimental method of unreceipted specific conditions in the embodiment, usually according to conventional conditions, such as people such as Sambrook, molecular cloning: the conditions described in the laboratory manual (New York:Cold Spring Harbor Laboratory Press, 1989), or according to the manufacturer's suggestion conditions of.
实施例1:筛选与肝癌相关的基因标志物Example 1: Screening of gene markers related to liver cancer
1、样品收集1. Sample collection
各收集5例肝癌患者的癌组织以及癌旁组织,患者均知情同意,上述所有标本的取得均通过组织伦理委员会的同意。The cancer tissues and adjacent tissues of 5 patients with liver cancer were collected, and the patients gave informed consent. All the above specimens were obtained with the consent of the organizational ethics committee.
2、RNA样品的制备2. Preparation of RNA samples
利用QIAGEN的组织RNA提取试剂盒进行组织RNA的提取,按说明书的具体步骤进行操作。Use QIAGEN's tissue RNA extraction kit to extract tissue RNA, and follow the specific steps of the instructions.
3、RNA样品的质量分析3. Quality analysis of RNA samples
利用Nanodrop2000对所提取的RNA浓度和纯度进行检测,琼脂糖凝胶电泳检测RNA完整性,Agilent2100测定RIN值。浓度≥200ng/μl,OD260/280介于1.8~2.2之间。The concentration and purity of the extracted RNA were detected by Nanodrop2000, RNA integrity was detected by agarose gel electrophoresis, and RIN value was determined by Agilent2100. Concentration ≥200ng/μl, OD260/280 is between 1.8 and 2.2.
4、去除rRNA4. Removal of rRNA
使用Ribo-Zero试剂盒除去总RNA中的核糖体RNA。Ribo-Zero kits were used to remove ribosomal RNA from total RNA.
5、构建cDNA文库5. Construction of cDNA library
利用利用Illumina的Truseq RNA sample Prep Kit进行cDNA文库的构建,具体操作按说明书进行。The cDNA library was constructed using the Truseq RNA sample Prep Kit of Illumina, and the specific operation was carried out according to the instructions.
6、上机测序6. On-board sequencing
使用Hiseq4000测序平台对cDNA文库进行测序,具体操作按说明书进行。The cDNA library was sequenced using the Hiseq4000 sequencing platform, and the specific operations were carried out according to the instructions.
7、高通量转录组测序数据分析7. High-throughput transcriptome sequencing data analysis
采用R包DESeq2,对原始的count数据进行生物信息学分析,删除不易检测到的lncRNA,差异表达lncRNA筛选标准:FDR<0.05,abs(log2FC)>2。The R package DESeq2 was used to perform bioinformatics analysis on the original count data, and the lncRNAs that were not easily detected were deleted. The screening criteria for differentially expressed lncRNAs were: FDR<0.05, abs(log2FC)>2.
7、结果7. Results
RNA-seq结果显示,LINC02806在肝癌组织中的表达水平显著高于癌旁组织。RNA-seq results showed that the expression level of LINC02806 in liver cancer tissues was significantly higher than that in adjacent tissues.
实施例2:QPCR测序验证LINC02806基因的差异表达Example 2: QPCR sequencing to verify the differential expression of LINC02806 gene
1、对LINC02806基因差异表达进行大样本QPCR验证。按照实施例1中的样本收集方式收集肝癌组织和癌旁组织样本各50例。1. Perform large-sample QPCR verification on the differential expression of LINC02806 gene. According to the sample collection method in Example 1, 50 samples of liver cancer tissue and 50 adjacent tissue samples were collected.
2、RNA提取步骤同实施例1。2. The RNA extraction steps were the same as those in Example 1.
3、逆转录:3. Reverse transcription:
采用20μl反应体系,每个样品取1μg总RNA作为模板RNA,在PCR管中分别加入以下组分:DEPC水,预混试剂,模板RNA。37℃15min,50℃5min,98℃5min,4℃维持。A 20 μl reaction system was used, and 1 μg of total RNA was taken from each sample as template RNA, and the following components were added to the PCR tube: DEPC water, premixed reagents, and template RNA. 37°C for 15 minutes, 50°C for 5 minutes, 98°C for 5 minutes, and maintained at 4°C.
(3)QPCR扩增检验(3) QPCR amplification test
根据LINC02806基因和管家基因GAPDH的序列设计引物,引物序列由上海生工合成。设计的引物序列如下所示:Primers were designed according to the sequences of LINC02806 gene and housekeeping gene GAPDH, and the primer sequences were synthesized by Shanghai Shenggong. The designed primer sequences are as follows:
LINC02806基因的引物序列为:The primer sequences of the LINC02806 gene are:
正向引物:5’-CACGATCCACATCTCAGGGG-3’(SEQ ID NO.1)Forward primer: 5'-CACGATCCACATCTCAGGGG-3' (SEQ ID NO.1)
反向引物:5’-TCAACACACTCGGAAGAGGC-3’(SEQ ID NO.2)Reverse primer: 5'-TCAACACACTCGGAAGAGGC-3' (SEQ ID NO.2)
管家基因GAPDH的引物序列为:The primer sequence of the housekeeping gene GAPDH is:
正向引物:5’-GAAAGCCTGCCGGTGACTAA-3’(SEQ ID NO.3)Forward primer: 5'-GAAAGCCTGCCGGTGACTAA-3' (SEQ ID NO.3)
反向引物:5’-GCCCAATACGACCAAATCAGAG-3’(SEQ ID NO.4)Reverse primer: 5'-GCCCAATACGACCAAATCAGAG-3' (SEQ ID NO.4)
配制10μl以下反应体系:SYBR Green聚合酶链式反应体系5μl,正反向引物(5μM)各2μl,模板cDNA 1μl。各项操作均于冰上进行。每个样本设置3个平行管,所有扩增反应均重复三次以上以保证结果的可靠性。扩增程序为:95℃60s,(95℃10s,60℃30s)×40个循环。Prepare 10 μl of the following reaction system: 5 μl of SYBR Green polymerase chain reaction system, 2 μl of forward and reverse primers (5 μM) each, and 1 μl of template cDNA. All operations were performed on ice. Three parallel tubes were set for each sample, and all amplification reactions were repeated more than three times to ensure the reliability of the results. The amplification program was: 95°C for 60s, (95°C for 10s, 60°C for 30s) × 40 cycles.
以SYBR Green作为荧光标记物,在7500Fast荧光实时定量PCR仪上进行PCR反应,通过融解曲线分析和电泳确定目的条带,ΔΔCT法进行相对定量。Using SYBR Green as a fluorescent marker, the PCR reaction was performed on a 7500Fast fluorescence real-time quantitative PCR instrument, and the target band was determined by melting curve analysis and electrophoresis, and the ΔΔCT method was used for relative quantification.
3、统计学方法3. Statistical methods
实验都是按照重复3次来完成的,结果数据都是以平均值±标准差的方式来表示,采用SPSS18.0统计软件来进行统计分析的,两者之间的差异采用t检验,认为当P<0.05时具有统计学意义。The experiments were repeated three times, and the results were expressed in terms of mean ± standard deviation. SPSS 18.0 statistical software was used for statistical analysis. Statistical significance was established when P<0.05.
4、结果4. Results
结果如图1所示,与癌旁组织相比,LINC02806基因在肝癌组织中表达上调,差异具有统计学意义(P<0.05),同RNA-sep结果一致。The results are shown in Figure 1. Compared with adjacent tissues, the expression of LINC02806 gene was up-regulated in liver cancer tissues, and the difference was statistically significant (P<0.05), which was consistent with the results of RNA-sep.
实施例3:LINC02806基因在肝癌细胞系中的差异表达Example 3: Differential expression of LINC02806 gene in liver cancer cell lines
1、细胞培养1. Cell culture
人肝癌细胞株HepG2、Huh7和正常肝细胞系HL-7702,以含10%胎牛血清和1%P/S的培养基DMEM在37℃、5%CO2、相对湿度为90%的培养箱中培养。2-3天换液1次,使用0.25%含EDTA的胰蛋白酶常规消化传代。Human hepatoma cell lines HepG2, Huh7 and normal liver cell line HL-7702 were cultured in DMEM containing 10% fetal bovine serum and 1% P/S in an incubator at 37°C, 5% CO2, and 90% relative humidity nourish. Change the medium once every 2-3 days, and use 0.25% EDTA-containing trypsin for routine digestion and passage.
2、RNA的提取2. RNA extraction
采用Qiagen的细胞RNA提取试剂盒对细胞中的RNA进行提取,实验操作按照说明书进行。The RNA in the cells was extracted using Qiagen's cell RNA extraction kit, and the experimental operation was carried out according to the instructions.
3、逆转录具体步骤同实施例23. The specific steps of reverse transcription are the same as those in Example 2
4、统计学方法4. Statistical methods
实验都是按照重复3次来完成的,结果数据都是以平均值±标准差的方式来表示,采用SPSS18.0统计软件来进行统计分析的,两者之间的差异采用t检验,认为当P<0.05时具有统计学意义。The experiments were repeated three times, and the results were expressed in terms of mean ± standard deviation. SPSS 18.0 statistical software was used for statistical analysis. Statistical significance was established when P<0.05.
5、结果5. Results
结果如图2所示,与正常肝细胞系相比,LINC02806基因在肝癌细胞HepG2、Huh7中表达均上调,差异具有统计学意义(P<0.05),同RNA-sep结果一致。The results are shown in Figure 2. Compared with normal liver cell lines, the expression of LINC02806 gene was up-regulated in hepatoma cells HepG2 and Huh7, and the difference was statistically significant (P<0.05), which was consistent with the RNA-sep results.
实施例4LINC02806基因的沉默Example 4 Silencing of the LINC02806 gene
1、细胞培养1. Cell culture
培养人肝癌细胞株HepG2,具体操作同实施例3。The human hepatoma cell line HepG2 was cultured, and the specific operations were the same as those in Example 3.
2、siRNA设计2. siRNA design
根据LINC02806的序列设计干扰RNA,将实验分成四组:空白对照组(HepG2),阴性对照组(siRNA-NC)和实验组(siRNA1、siRNA2、siRNA3),其中阴性对照组siRNA与LINC02806基因的序列无同源性。设计的siRNA序列如下所示:The interfering RNA was designed according to the sequence of LINC02806, and the experiment was divided into four groups: blank control group (HepG2), negative control group (siRNA-NC) and experimental group (siRNA1, siRNA2, siRNA3). No homology. The designed siRNA sequences are shown below:
阴性对照siRNA序列(siRNA-NC):Negative control siRNA sequence (siRNA-NC):
正义链为5’-AAAUCAGAGAAUAAUCUAGGA-3’(SEQ ID NO.5),The sense strand is 5'-AAAUCAGAGAAUAAUCUAGGA-3' (SEQ ID NO. 5),
反义链为5’-UUUAGUCUCUUAUUAGAUCCU-3’(SEQ ID NO.6);The antisense strand is 5'-UUUAGUCUCUUAUUAGAUCCU-3' (SEQ ID NO.6);
siRNA1:siRNA1:
正义链为5’-UAUUACUCCCCUUAUUGCGGG-3’(SEQ ID NO.7),The sense strand is 5'-UAUUACUCCCCUUAUUGCGGG-3' (SEQ ID NO.7),
反义链为5’-AUAAUGAGGGGAAUAACGCCC-3’(SEQ ID NO.8);The antisense strand is 5'-AUAAUGAGGGGAAUAACGCCC-3' (SEQ ID NO. 8);
siRNA2:siRNA2:
正义链为5’-UCAAUGUGUUUUUGGAAUGCA-3’(SEQ ID NO.9),The sense strand is 5'-UCAAUGUGUUUUUGGAAUGCA-3' (SEQ ID NO. 9),
反义链为5’-AGUUACACAAAAACCUUACGU-3’(SEQ ID NO.10);The antisense strand is 5'-AGUUACACAAAAACCUUACGU-3' (SEQ ID NO. 10);
siRNA3:siRNA3:
正义链为5’-AGAUACAGUAGGAAGAUGGCA-3’(SEQ ID NO.11),The sense strand is 5'-AGAUACAGUAGGAAGAUGGCA-3' (SEQ ID NO. 11),
反义链为5’-UCUAUGUCAUCCUUCUACCGU-3’(SEQ ID NO.12)The antisense strand is 5'-UCUAUGUCAUCCUUCUACCGU-3' (SEQ ID NO.12)
将细胞按2×105/孔接种到六孔细胞培养板中,在37℃、5%CO2培养箱中细胞培养24h;在无双抗、含10%FBS的DMEM培养基中,转染按照脂质体转染试剂2000(购自于Invitrogen公司)的说明书转染。The cells were seeded into a six-well cell culture plate at 2 × 105/well, and the cells were cultured in a 37°C, 5% CO2 incubator for 24 hours; in DMEM medium without double antibody and 10% FBS, transfection was performed according to lipid Transfection was carried out according to the instructions of Body Transfection Reagent 2000 (purchased from Invitrogen Company).
3、QPCR检测LINC02806基因的转录水平3. QPCR to detect the transcription level of LINC02806 gene
3.1细胞总RNA的提取具体步骤同实施例3。3.1 The specific steps for the extraction of total RNA from cells are the same as those in Example 3.
3.2逆转录步骤同实施例2。3.2 The reverse transcription steps were the same as those in Example 2.
3.3QPCR扩增步骤同实施例2。3.3 The steps of QPCR amplification were the same as those in Example 2.
4、统计学方法4. Statistical methods
实验都是按照重复3次来完成的,结果数据都是以平均值±标准差的方式来表示,采用SPSS18.0统计软件来进行统计分析的,干扰LINC02806基因表达组与对照组之间的差异采用t检验,认为当P<0.05时具有统计学意义。The experiments were repeated 3 times, and the results were expressed as mean ± standard deviation. SPSS18.0 statistical software was used for statistical analysis to interfere with the difference between the LINC02806 gene expression group and the control group. A t-test was used, and it was considered statistically significant when P<0.05.
5、结果5. Results
结果如图3显示,相比转染空载siRNA-NC,实验组中LINC02806mRNA的水平下降,其中siRNA2组的干扰效果最为显著,差异具有统计学意义(P<0.05)。The results are shown in Figure 3. Compared with the transfection of empty siRNA-NC, the level of LINC02806 mRNA in the experimental group decreased, and the interference effect of the siRNA2 group was the most significant, and the difference was statistically significant (P<0.05).
实施例5CCK8检测细胞增殖实验Example 5 CCK8 detection cell proliferation experiment
1、细胞培养与转染步骤同实施例41. Cell culture and transfection steps are the same as in Example 4
2、CCK8检测细胞增殖2. CCK8 detects cell proliferation
1)将对数增殖期的HepG2细胞接种于96孔板,每孔2×103个细胞;将实验分为组(对照组、siRNA-NC组、siRNA2组),每组设3个复孔;1) HepG2 cells in the logarithmic growth phase were inoculated into 96-well plates, with 2 × 103 cells per well; the experiment was divided into groups (control group, siRNA-NC group, siRNA2 group), and each group had 3 duplicate wells;
2)分别在转染0h、24h、48h、72h后加入10μl/孔CCK8试剂;2) Add 10 μl/well of CCK8 reagent after 0h, 24h, 48h and 72h of transfection respectively;
3)2h后使用酶标仪检测A450的吸光值。3) After 2h, use a microplate reader to detect the absorbance of A450.
3、统计学方法3. Statistical methods
实验都是按照重复3次来完成的,采用SPSS13.0统计软件来进行统计分析,两者之间的差异采用t检验,认为当P<0.05时具有统计学意义。Experiments were repeated three times, and SPSS13.0 statistical software was used for statistical analysis. The difference between the two was carried out by t test, and it was considered statistically significant when P<0.05.
4、结果4. Results
图4所示的结果显示:siRNA2组的细胞生长速度明显低对照组的细胞生长速度,差异具有统计学意义(P<0.05),上述结果表明LINC02806的敲除能够抑制肝癌细胞的生长。The results shown in Figure 4 show that the cell growth rate of the siRNA2 group was significantly lower than that of the control group, and the difference was statistically significant (P<0.05). The above results indicated that the knockout of LINC02806 could inhibit the growth of liver cancer cells.
上述实施例的说明只是用于理解本发明的方法及其核心思想。应当指出,对于本领域的普通技术人员来说,在不脱离本发明原理的前提下,还可以对本发明进行若干改进和修饰,这些改进和修饰也将落入本发明权利要求的保护范围内。The description of the above embodiment is only for understanding the method and the core idea of the present invention. It should be pointed out that for those of ordinary skill in the art, without departing from the principle of the present invention, several improvements and modifications can also be made to the present invention, and these improvements and modifications will also fall within the protection scope of the claims of the present invention.
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