[go: up one dir, main page]

CN114509420B - Method for evaluating migration risk of antibiotic resistance gene - Google Patents

Method for evaluating migration risk of antibiotic resistance gene Download PDF

Info

Publication number
CN114509420B
CN114509420B CN202210407473.8A CN202210407473A CN114509420B CN 114509420 B CN114509420 B CN 114509420B CN 202210407473 A CN202210407473 A CN 202210407473A CN 114509420 B CN114509420 B CN 114509420B
Authority
CN
China
Prior art keywords
bacteria
migration
drug
target strain
antibiotic
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Active
Application number
CN202210407473.8A
Other languages
Chinese (zh)
Other versions
CN114509420A (en
Inventor
许燕滨
林晓君
韩睿琪
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Guangdong University of Technology
Original Assignee
Guangdong University of Technology
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Guangdong University of Technology filed Critical Guangdong University of Technology
Priority to CN202210407473.8A priority Critical patent/CN114509420B/en
Publication of CN114509420A publication Critical patent/CN114509420A/en
Application granted granted Critical
Publication of CN114509420B publication Critical patent/CN114509420B/en
Active legal-status Critical Current
Anticipated expiration legal-status Critical

Links

Images

Classifications

    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N21/00Investigating or analysing materials by the use of optical means, i.e. using sub-millimetre waves, infrared, visible or ultraviolet light
    • G01N21/62Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light
    • G01N21/63Systems in which the material investigated is excited whereby it emits light or causes a change in wavelength of the incident light optically excited
    • G01N21/64Fluorescence; Phosphorescence
    • G01N21/6486Measuring fluorescence of biological material, e.g. DNA, RNA, cells
    • CCHEMISTRY; METALLURGY
    • C12BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12QMEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/02Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving viable microorganisms
    • C12Q1/04Determining presence or kind of microorganism; Use of selective media for testing antibiotics or bacteriocides; Compositions containing a chemical indicator therefor
    • C12Q1/10Enterobacteria
    • YGENERAL TAGGING OF NEW TECHNOLOGICAL DEVELOPMENTS; GENERAL TAGGING OF CROSS-SECTIONAL TECHNOLOGIES SPANNING OVER SEVERAL SECTIONS OF THE IPC; TECHNICAL SUBJECTS COVERED BY FORMER USPC CROSS-REFERENCE ART COLLECTIONS [XRACs] AND DIGESTS
    • Y02TECHNOLOGIES OR APPLICATIONS FOR MITIGATION OR ADAPTATION AGAINST CLIMATE CHANGE
    • Y02ATECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE
    • Y02A50/00TECHNOLOGIES FOR ADAPTATION TO CLIMATE CHANGE in human health protection, e.g. against extreme weather
    • Y02A50/30Against vector-borne diseases, e.g. mosquito-borne, fly-borne, tick-borne or waterborne diseases whose impact is exacerbated by climate change

Landscapes

  • Health & Medical Sciences (AREA)
  • Chemical & Material Sciences (AREA)
  • Life Sciences & Earth Sciences (AREA)
  • Engineering & Computer Science (AREA)
  • Organic Chemistry (AREA)
  • Immunology (AREA)
  • Zoology (AREA)
  • Physics & Mathematics (AREA)
  • Analytical Chemistry (AREA)
  • Biochemistry (AREA)
  • General Health & Medical Sciences (AREA)
  • Wood Science & Technology (AREA)
  • Molecular Biology (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Toxicology (AREA)
  • Biophysics (AREA)
  • Pathology (AREA)
  • Biotechnology (AREA)
  • Microbiology (AREA)
  • Biomedical Technology (AREA)
  • General Physics & Mathematics (AREA)
  • Nuclear Medicine, Radiotherapy & Molecular Imaging (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • General Engineering & Computer Science (AREA)
  • Genetics & Genomics (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)

Abstract

本发明公开一种评估抗生素耐药基因迁移风险的方法。该方法包括:提供第一目标菌株和第二目标菌株,其中第一目标菌株具有双荧光信号,第二目标菌株具有多抗生素敏感性;使第一目标菌株在待测样本中与第二目标菌株在适于接合的条件下接触得到接合子;对接合子进行荧光检测。本发明的方法可快速评估抗生素耐药基因迁移的风险,有效解决现有计算迁移频率的方法中存在的费时费力的缺陷,同时快速评估不同环境条件对耐药基因水平迁移的风险。此外,本发明构建的双荧光耐药性大肠杆菌作为研究抗生素耐药基因的水平接合转移的供体菌,还可以对耐药基因进入植物或水生生物肠道进行快速定位,从而实现耐药基因迁移可视化。

Figure 202210407473

The invention discloses a method for evaluating the risk of antibiotic resistance gene migration. The method comprises: providing a first target bacterial strain and a second target bacterial strain, wherein the first target bacterial strain has dual fluorescent signals, and the second target bacterial strain has multi-antibiotic sensitivity; The zygote is contacted under conditions suitable for conjugation; the zygote is subjected to fluorescence detection. The method of the present invention can quickly assess the risk of antibiotic resistance gene migration, effectively solve the time-consuming and labor-intensive defects in existing methods for calculating migration frequency, and rapidly assess the risk of horizontal migration of drug resistance genes under different environmental conditions. In addition, the double fluorescent drug-resistant Escherichia coli constructed by the present invention is used as a donor bacterium for studying the horizontal conjugative transfer of antibiotic resistance genes, and can also quickly locate the drug-resistant genes entering the intestinal tract of plants or aquatic organisms, thereby realizing the drug-resistant genes. Migration visualization.

Figure 202210407473

Description

一种评估抗生素耐药基因迁移风险的方法A method to assess the risk of transfer of antibiotic resistance genes

技术领域technical field

本发明涉及生物技术领域,具体地涉及一种评估抗生素耐药基因迁移风险的方法。The invention relates to the field of biotechnology, in particular to a method for assessing the migration risk of antibiotic resistance genes.

背景技术Background technique

随着抗生素的广泛使用,由抗生素耐药基因(ARG)驱动的抗生素耐药菌的数量不断增加,还可以通过接合、转导、转化等方式使其他无抗性的细菌获得抗性。而水环境通常成为耐药菌和耐药基因的天然储存库,是耐药基因保存、扩增、转移和扩散的重要环境介质。大量报道显示,各类地表水,包括医院污水,生活污水,污水处理厂以及地下水甚至饮用水都检测出数百种耐药基因甚至多重耐药基因。With the widespread use of antibiotics, the number of antibiotic-resistant bacteria driven by antibiotic resistance genes (ARGs) is increasing, and other non-resistant bacteria can also acquire resistance through conjugation, transduction, and transformation. The water environment is usually a natural reservoir of drug-resistant bacteria and drug-resistant genes, and an important environmental medium for the preservation, amplification, transfer and diffusion of drug-resistant genes. A large number of reports have shown that hundreds of drug resistance genes or even multiple drug resistance genes have been detected in various surface waters, including hospital sewage, domestic sewage, sewage treatment plants, groundwater and even drinking water.

传统的耐药基因水平迁移研究是在体外采用滤膜或液体孵育的方法将接合子在含有抗生素选择压力的液固体培养基中筛选出来进行稀释涂布计数,整个过程虽然操作简便但耗时较长,且无法可视化,因而无法快速对耐药基因在不同水质环境条件下的迁移风险进行分析。The traditional horizontal migration research of drug-resistant genes uses filter membranes or liquid incubation methods to screen zygotes in liquid-solid medium containing antibiotic selection pressure for dilution and counting. Although the whole process is simple to operate, it is time-consuming. It is long and cannot be visualized, so it is impossible to quickly analyze the migration risk of drug resistance genes under different water quality environmental conditions.

发明内容Contents of the invention

为解决现有技术中的技术问题,本发明通过构建出携带耐药性的双色荧光的大肠杆菌,通过该双色荧光大肠杆菌与对多种抗生素具有敏感性的细菌和待测水样混合培养,通过多维全景流式细胞仪进行细菌荧光信号测定,根据不同荧光信号测定的细菌数量结果,对ARG的水平迁移频率进行计算。具体地,本发明包括以下内容。In order to solve the technical problems in the prior art, the present invention constructs two-color fluorescent Escherichia coli carrying drug resistance, and mixes the two-color fluorescent Escherichia coli with bacteria sensitive to various antibiotics and water samples to be tested, The bacterial fluorescence signal was measured by multi-dimensional panoramic flow cytometer, and the horizontal migration frequency of ARG was calculated according to the results of the number of bacteria measured by different fluorescent signals. Specifically, the present invention includes the following contents.

本发明的第一方面,提供一种评估抗生素耐药基因迁移风险的方法,其包括:The first aspect of the present invention provides a method for assessing the risk of antibiotic resistance gene migration, which includes:

(1) 提供第一目标菌株和第二目标菌株,其中所述第一目标菌株具有双荧光信号,所述第二目标菌株具有多抗生素敏感性;(1) providing a first target bacterial strain and a second target bacterial strain, wherein the first target bacterial strain has dual fluorescent signals, and the second target bacterial strain has multiple antibiotic sensitivity;

(2) 使所述第一目标菌株在待测样本中与所述第二目标菌株在适于接合的条件下接触,得到接合子;(2) contacting the first target strain with the second target strain in the sample to be tested under conditions suitable for conjugation to obtain zygotes;

(3) 对所述接合子进行荧光检测。(3) Perform fluorescence detection on the zygote.

根据本发明所述的评估抗生素耐药基因迁移风险的方法,优选地,所述第一目标菌株通过红色荧光蛋白标记的受体菌与绿色荧光蛋白标记的供体菌进行接合构建得到。According to the method for assessing the risk of antibiotic resistance gene transfer in the present invention, preferably, the first target strain is constructed by conjugating a recipient bacterium marked with red fluorescent protein and a donor bacterium marked with green fluorescent protein.

根据本发明所述的评估抗生素耐药基因迁移风险的方法,优选地,所述供体菌和所述受体菌为大肠杆菌。According to the method for assessing the risk of antibiotic resistance gene transfer in the present invention, preferably, the donor bacteria and the recipient bacteria are Escherichia coli.

根据本发明所述的评估抗生素耐药基因迁移风险的方法,优选地,所述大肠杆菌包括大肠杆菌K12或大肠杆菌DH 5α。According to the method for assessing the risk of antibiotic resistance gene transfer in the present invention, preferably, the Escherichia coli includes Escherichia coli K12 or Escherichia coli DH 5α.

根据本发明所述的评估抗生素耐药基因迁移风险的方法,优选地,所述供体菌具有抗生素耐药性,或携带耐药基因。According to the method for assessing the migration risk of antibiotic resistance genes of the present invention, preferably, the donor bacteria have antibiotic resistance or carry drug resistance genes.

根据本发明所述的评估抗生素耐药基因迁移风险的方法,优选地,所述抗生素包括四环素、氨苄青霉素和卡那霉素中的至少一种或其组合;所述耐药基因包括:tetA、tnpR和aphA中的至少一种或其组合。According to the method for assessing the risk of transfer of antibiotic-resistant genes according to the present invention, preferably, the antibiotics include at least one or a combination of tetracycline, ampicillin and kanamycin; the drug-resistant genes include: tetA, At least one or a combination of tnpR and aphA.

根据本发明所述的评估抗生素耐药基因迁移风险的方法,优选地,抗生素耐药基因的水平迁移的频率=(绿色荧光信号通道细菌检测量-绿色荧光信号通道:红色荧光信号通道细菌检测量)/(细菌总量-红色荧光信号通道细菌检测量)。According to the method for assessing the migration risk of antibiotic-resistant genes according to the present invention, preferably, the frequency of horizontal migration of antibiotic-resistant genes=(green fluorescent signal channel bacterial detection amount-green fluorescent signal channel:red fluorescent signal channel bacterial detection amount )/(total amount of bacteria-detection amount of bacteria in the red fluorescent signal channel).

根据本发明所述的评估抗生素耐药基因迁移风险的方法,优选地,适于接合的条件是指温度为34-39℃,150-200 rpm,时间为5-12 h。According to the method for assessing the risk of antibiotic resistance gene migration in the present invention, preferably, the conditions suitable for conjugation refer to temperature of 34-39° C., 150-200 rpm, and time of 5-12 h.

根据本发明所述的评估抗生素耐药基因迁移风险的方法,优选地,使用流式细胞仪进行荧光信号检测。According to the method for assessing the migration risk of antibiotic resistance genes described in the present invention, preferably, a flow cytometer is used for fluorescent signal detection.

本发明的第二方面,提供一种用于评估抗生素耐药基因迁移风险的体系,其包括:A second aspect of the present invention provides a system for assessing the risk of antibiotic resistance gene migration, which includes:

具有双荧光信号的第一目标菌株;A first target strain with dual fluorescent signals;

第二目标菌株,其中所述第二目标菌株用于大肠杆菌的基因迁移,且所述第二目标菌株具有多抗生素敏感性;和A second target strain, wherein the second target strain is used for gene transfer of Escherichia coli, and the second target strain has multiple antibiotic sensitivity; and

多通道荧光检测装置。Multi-channel fluorescence detection device.

本发明还提供试剂在制备用于通过以下方法评估抗生素耐药基因迁移风险的试剂盒中的用途,其中该方法包括:(1) 提供第一目标菌株和第二目标菌株,其中所述第一目标菌株具有双荧光信号,所述第二目标菌株具有多抗生素敏感性;(2) 使所述第一目标菌株在待测样本中与所述第二目标菌株在适于接合的条件下接触,得到接合子;(3) 对所述接合子进行荧光检测;The present invention also provides the use of reagents in the preparation of kits for assessing the risk of antibiotic resistance gene migration by the following method, wherein the method includes: (1) providing a first target strain and a second target strain, wherein the first The target strain has dual fluorescent signals, and the second target strain has multi-antibiotic sensitivity; (2) contacting the first target strain with the second target strain in the sample to be tested under conditions suitable for conjugation, Obtain the zygote; (3) carry out fluorescence detection to the zygote;

所述试剂包括:具有双荧光信号的第一目标菌株;The reagents include: a first target strain with dual fluorescent signals;

第二目标菌株,其中所述第二目标菌株用于大肠杆菌的基因迁移,且所述第二目标菌株具有多抗生素敏感性;和A second target strain, wherein the second target strain is used for gene transfer of Escherichia coli, and the second target strain has multiple antibiotic sensitivity; and

用于培养所述第一菌株或所述第二菌株的培养液,所述培养液包括0.01-0.5mM的磷酸盐缓冲液,优选为0.1 mM磷酸盐缓冲液。A culture solution for cultivating the first strain or the second strain, the culture solution includes 0.01-0.5 mM phosphate buffer, preferably 0.1 mM phosphate buffer.

本发明技术效果包括但不限于:The technical effects of the present invention include but are not limited to:

(1) 本发明的方法可快速评估多种待测水样水质条件(pH、电导率、COD、抗生素及其他有机物质)下抗生素耐药基因迁移的风险,有效解决现有计算迁移频率的方法中存在的费时费力的缺陷,同时能快速评估不同环境条件对耐药基因水平迁移的风险。(1) The method of the present invention can quickly assess the risk of antibiotic resistance gene migration under various water quality conditions (pH, conductivity, COD, antibiotics and other organic substances) to be tested, effectively solving the existing method for calculating migration frequency The defects of time-consuming and labor-intensive methods exist, and at the same time, it can quickly assess the risk of horizontal transfer of drug-resistant genes under different environmental conditions.

(2) 本发明利用携带双荧光的细菌和敏感细菌检测待测水样下抗生素耐药基因迁移风险,通过构建携带双荧光的细菌为供体菌,敏感菌为受体菌,受体和供体在待测的水样接合后,通过收集大量的细菌并检测荧光信号对接合子进行快速定量,可快速评估多种待测水质条件下中ARG的水平迁移风险,可应用于污水风险评价领域。(2) The present invention uses bacteria carrying double fluorescence and sensitive bacteria to detect the risk of antibiotic resistance gene migration under the water sample to be tested, by constructing bacteria carrying double fluorescence as donor bacteria, sensitive bacteria as acceptor bacteria, acceptor and donor After the zygote is conjugated in the water sample to be tested, the zygote can be quickly quantified by collecting a large number of bacteria and detecting the fluorescent signal, which can quickly assess the horizontal migration risk of ARG in various water quality conditions to be tested, and can be applied to the field of sewage risk assessment .

(3) 本发明构建的双荧光耐药性大肠杆菌的荧光表达具有稳定性,绿色荧光的表达不会由于质粒的迁移发生丢失,且无需诱导剂诱导荧光表达;筛选的嗜水气单胞菌对耐药基因具有较高的敏感性;多维全景流式细胞仪对红、绿两种荧光具有较高的响应信号,可快速评估不同待测水样水质条件下抗生素耐药基因迁移的风险。(3) The fluorescent expression of the dual fluorescent drug-resistant Escherichia coli constructed by the present invention is stable, the expression of green fluorescent light will not be lost due to the migration of the plasmid, and no inducer is needed to induce fluorescent expression; the screened Aeromonas hydrophila It has high sensitivity to drug resistance genes; the multi-dimensional panoramic flow cytometer has high response signals to red and green fluorescence, and can quickly assess the risk of antibiotic resistance gene migration under different water quality conditions of the water samples to be tested.

(4) 本发明构建的双荧光耐药性大肠杆菌作为研究抗生素耐药基因的水平接合转移的供体菌,不仅可以应用于水体环境中快速计算耐药基因的水平接合频率,还可以在土壤、水生生物肠道中快速计算耐药基因的水平接合频率。(4) The double fluorescent drug-resistant Escherichia coli constructed by the present invention is used as the donor bacteria for studying the horizontal conjugation transfer of antibiotic resistance genes. , Rapid calculation of horizontal splice frequency of drug resistance genes in the gut of aquatic organisms.

(5) 本发明构建的双荧光耐药性大肠杆菌作为研究抗生素耐药基因的水平接合转移的供体菌,甚至还可以通过荧光信号对耐药基因进入植物或水生生物肠道进行快速定位,实现耐药基因迁移可视化。(5) The double-fluorescent drug-resistant Escherichia coli constructed by the present invention is used as the donor bacteria for studying the horizontal splice transfer of antibiotic-resistant genes, and can even quickly locate the drug-resistant genes entering the intestinal tract of plants or aquatic organisms through fluorescent signals, Realize the visualization of drug resistance gene migration.

附图说明Description of drawings

图1为本发明实施例构建的双色大肠杆菌的菌落生长形态照片图。Figure 1 is a photograph of the colony growth morphology of the bicolor Escherichia coli constructed in the embodiment of the present invention.

图2为本发明实施例构建的双色大肠杆菌在激光共聚焦扫描显微镜下的扫描图。Fig. 2 is a scanning image of the double-color Escherichia coli constructed in the embodiment of the present invention under a laser confocal scanning microscope.

图3为本发明实施例提供的在待测水样添加双色大肠杆菌、敏感嗜水气单胞菌共培养后的流式细胞图。Fig. 3 is a flow cytometry diagram provided by an embodiment of the present invention after co-cultivating two-color Escherichia coli and sensitive Aeromonas hydrophila in the water sample to be tested.

图4为本发明实施例提供的不同的待测水样的抗生素耐药基因的接合频率计算结果图。Fig. 4 is a diagram of calculation results of the conjugation frequency of antibiotic resistance genes in different water samples to be tested provided by the embodiment of the present invention.

具体实施方式detailed description

现详细说明本发明的多种示例性实施方式,该详细说明不应认为是对本发明的限制,而应理解为是对本发明的某些方面、特性和实施方案的更详细的描述。Various exemplary embodiments of the present invention will now be described in detail. The detailed description should not be considered as a limitation of the present invention, but rather as a more detailed description of certain aspects, features and embodiments of the present invention.

应理解本发明中所述的术语仅仅是为描述特别的实施方式,并非用于限制本发明。另外,对于本发明中的数值范围,应理解为具体公开了该范围的上限和下限以及它们之间的每个中间值。在任何陈述值或陈述范围内的中间值以及任何其他陈述值或在所述范围内的中间值之间的每个较小的范围也包括在本发明内。这些较小范围的上限和下限可独立地包括或排除在范围内。It should be understood that the terminology described in the present invention is only used to describe specific embodiments, and is not used to limit the present invention. In addition, regarding the numerical ranges in the present invention, it should be understood that the upper and lower limits of the range and every intermediate value therebetween are specifically disclosed. Each smaller range between any stated value or intervening value in a stated range and any other stated value or intervening value in a stated range is encompassed within the invention. The upper and lower limits of these smaller ranges may independently be included or excluded from the range.

除非另有说明,否则本文使用的所有技术和科学术语具有本发明所述领域的常规技术人员通常理解的相同含义。虽然本发明仅描述了优选的方法和材料,但是在本发明的实施或测试中也可以使用与本文所述相似或等同的任何方法和材料。本说明书中提到的所有文献通过引用并入,用以公开和描述与所述文献相关的方法和/或材料。在与任何并入的文献冲突时,以本说明书的内容为准。除非另有说明,否则“%”为基于重量的百分数。Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs. Although only the preferred methods and materials are described herein, any methods and materials similar or equivalent to those described herein can be used in the practice or testing of the present invention. All documents mentioned in this specification are incorporated by reference to disclose and describe the methods and/or materials in connection with which the documents are described. In case of conflict with any incorporated document, the contents of this specification control. "%" is a percentage by weight unless otherwise specified.

本发明评估抗生素耐药基因迁移风险的方法包括步骤(1)-(3),下面进行详细说明。The method for assessing the migration risk of antibiotic resistance genes of the present invention includes steps (1)-(3), which will be described in detail below.

步骤(1)step 1)

本发明的第一目标菌株具有双荧光信号,双荧光是指具有两种不同的可检测荧光,荧光优选为红色荧光和绿色荧光。双荧光信号菌株通过具有红色荧光蛋白的受体菌和具有绿色荧光蛋白的供体菌通过接合得到。接合方法不特别限定,可采用本领域已知的接合方法,其实例包括但不限于固体平板、液体静止培养、液体摇床培养(滤液接合法)等。The first target strain of the present invention has dual fluorescence signals, which means having two different detectable fluorescences, preferably red fluorescence and green fluorescence. The dual fluorescent signal strain was obtained by mating the recipient bacteria with red fluorescent protein and the donor bacteria with green fluorescent protein. The conjugation method is not particularly limited, and conjugation methods known in the art can be used, examples of which include, but are not limited to, solid plates, liquid static culture, liquid shaker culture (filtrate conjugation method) and the like.

优选地,选择基因组携带红色荧光蛋白大肠杆菌K12作为受体菌,选择携带绿色荧光蛋白的大肠杆菌DH 5α作为供体菌。表达荧光蛋白的基因可以是宿主菌基因组携带或通过表达载体与所述基因可操作地连接。在某些具体实施方案中,受体菌的基因组携带表达红色荧光蛋白的基因。在另外的实施方案中,供体菌含有携带绿色荧光蛋白表达基因的质粒。质粒的类型不特别限定,优选地,本发明使用的质粒为RP4质粒,其宿主范围广,移动能力高。Preferably, Escherichia coli K12 carrying red fluorescent protein in the genome is selected as the recipient bacterium, and Escherichia coli DH 5α carrying green fluorescent protein is selected as the donor bacterium. The gene expressing the fluorescent protein can be carried by the genome of the host bacterium or be operably linked to the gene through an expression vector. In some specific embodiments, the genome of the recipient bacteria carries a gene expressing red fluorescent protein. In another embodiment, the donor bacteria contain a plasmid carrying a gene for expressing green fluorescent protein. The type of plasmid is not particularly limited. Preferably, the plasmid used in the present invention is RP4 plasmid, which has a wide host range and high mobility.

优选地,荧光细菌K12通过mCherry红色荧光蛋白进行标记,荧光细菌DH 5α通过sfgfp绿色荧光蛋白进行标记。Preferably, the fluorescent bacterium K12 is labeled with mCherry red fluorescent protein, and the fluorescent bacterium DH 5α is labeled with sfgfp green fluorescent protein.

本发明所用术语“可操作地连接”和“标记”具有本领域通常理解的含义。The terms "operably linked" and "label" used in the present invention have meanings commonly understood in the art.

本发明中,第一目标菌株中的供体菌具有耐药性,耐药性是指其携带选自四环素、氨苄青霉素和卡那霉素三种抗生素耐药性的至少两种,例如可同时携带上述三种抗生素耐药性。优选地,第一目标菌株中的供体菌携带选自tetA、tnpR、aphA耐药基因的至少两种,例如可同时携带上述三种耐药基因。In the present invention, the donor bacteria in the first target strain has drug resistance, drug resistance means that it carries at least two of the three antibiotic resistances selected from tetracycline, ampicillin and kanamycin, for example, it can be simultaneously Carry the above three antibiotic resistance. Preferably, the donor bacterium in the first target strain carries at least two drug resistance genes selected from tetA, tnpR, and aphA, for example, it may carry the above three drug resistance genes at the same time.

本发明中,所述供体菌:所述受体菌:LB培养基=1:1-2:1-5比例进行接合,接合时间为5-12 h。优选地,所述供体菌:所述受体菌:LB培养基=1:1-1.5:2-4,接合时间为8-12h。还优选地,所述供体菌:所述受体菌:LB培养基=1:1:3,接合时间为12h。本发明中接合时间不超过12h,大大缩短了接合实验时间。In the present invention, the donor bacterium: the recipient bacterium: LB medium = 1:1-2:1-5 is used for conjugation, and the conjugation time is 5-12 h. Preferably, the donor bacteria: the recipient bacteria: LB medium = 1:1-1.5:2-4, and the conjugation time is 8-12 hours. Also preferably, the donor bacteria: the recipient bacteria: LB medium = 1:1:3, and the conjugation time is 12 hours. In the present invention, the bonding time does not exceed 12 hours, which greatly shortens the bonding experiment time.

优选地,所述供体菌、受体菌、接合液培养温度为34-41℃,还优选35-39℃,进一步优选为36-38℃。用于接合的培养条件为140 rpm-220 rpm恒温摇床,优选为150 rpm-210rpm,还优选为160 rpm-200 rpm。Preferably, the culture temperature of the donor bacteria, recipient bacteria and conjugation fluid is 34-41°C, more preferably 35-39°C, further preferably 36-38°C. The culture condition for conjugation is 140 rpm-220 rpm constant temperature shaker, preferably 150 rpm-210 rpm, and also preferably 160 rpm-200 rpm.

本发明中,纯培养后洗涤重悬稀释至所述供体菌、受体菌的数量分别达到108-10CFU/mL,优选为109-10 CFU/mL,还优选为1010 CFU/mL。In the present invention, after pure culture, wash, resuspend and dilute until the numbers of the donor bacteria and the recipient bacteria respectively reach 108-10 CFU/mL, preferably 109-10 CFU/mL, and more preferably 1010 CFU/mL.

需要说明的说是,用于所述供体菌、受体菌接合的过程中,红、绿荧光均无需添加诱导剂诱导发光,构建的双荧光耐药性大肠杆菌的荧光表达具有稳定性,绿色荧光的表达不会由于质粒的迁移发生丢失。It should be noted that in the process of conjugating the donor bacteria and the recipient bacteria, red and green fluorescence do not need to add inducers to induce luminescence, and the fluorescence expression of the constructed double fluorescent drug-resistant Escherichia coli is stable. The expression of green fluorescence will not be lost due to the migration of the plasmid.

优选地,测定绿色荧光蛋白(sfgfp)采用488 nm激发光波长,红色荧光蛋白(mCherry)采用581 nm激发光波长。荧光强度测定仪器不特别限定,可以采用本领域已知的装置或设备,其实例包括但不限于例如激光共聚焦扫描显微镜。Preferably, the green fluorescent protein (sfgfp) is measured with an excitation light wavelength of 488 nm, and the red fluorescent protein (mCherry) is measured with an excitation light wavelength of 581 nm. The instrument for measuring fluorescence intensity is not particularly limited, and devices or devices known in the art can be used, examples of which include but are not limited to, for example, a laser confocal scanning microscope.

本发明的第二目标菌株具有多抗生素敏感性。抗生素敏感性可以通过药敏片鉴定,药敏片的实例包括但不限于:土霉素、罗红霉素、磺胺、卡那霉素、氨苄青霉素、阿莫西林。The second target strain of the present invention has multiple antibiotic susceptibility. Antibiotic susceptibility can be identified by drug-sensitive tablets, examples of which include, but are not limited to: oxytetracycline, roxithromycin, sulfonamides, kanamycin, ampicillin, and amoxicillin.

本发明中,第二目标菌株的来源不特别限定,其可以来自任何样本的任何抗生素敏感性细菌。例如可以是来自水体、土壤的土著菌群。待测的水体的类型包括但不限于地表水、养殖废水或含有不同污染物的水体(例如城市污水、医疗废水、各种自配的水溶液等)。在具体实施方案中,本发明的第二目标菌株为嗜水气单胞菌。In the present invention, the source of the second target strain is not particularly limited, and it can be any antibiotic-sensitive bacteria from any sample. For example, it can be indigenous flora from water bodies, soil. The types of water bodies to be tested include but are not limited to surface water, aquaculture wastewater or water bodies containing different pollutants (such as urban sewage, medical wastewater, various self-prepared aqueous solutions, etc.). In a specific embodiment, the second target strain of the present invention is Aeromonas hydrophila.

优选地,本发明的第二目标菌株从热带爪蛙的粪水混合物培养分离得到的具有多种抗生素敏感性的、可与大肠杆菌进行基因迁移的细菌。Preferably, the second target strain of the present invention is a bacterium that is isolated from the feces and water mixture of Xenopus tropicalis and is sensitive to various antibiotics and can perform gene migration with Escherichia coli.

步骤(2)step (2)

步骤(2)中,使所述第一目标菌株在待测样本中与所述第二目标菌株在适于接合的条件下接触,得到接合子。In step (2), the first target strain is contacted with the second target strain in the sample to be tested under conditions suitable for conjugation to obtain zygotes.

优选地,所述待测样本经过过滤除菌处理。过滤除菌步骤不特别限定,例如可以将所述待测样经过特定孔径的滤膜除菌,滤膜孔径大小通常为0.22 μm或更小。Preferably, the sample to be tested is sterilized by filtration. The filter sterilization step is not particularly limited, for example, the sample to be tested can be sterilized through a filter membrane with a specific pore size, and the pore size of the filter membrane is usually 0.22 μm or smaller.

适于接合的条件是指混合培养的温度为34-41℃,还优选35-39℃,进一步优选为36-38℃。用于接合的培养条件为140 rpm-220 rpm恒温摇床,优选为150 rpm-210 rpm,还优选为160 rpm-200 rpm。接合时间为8-15 h。还优选为8-12h。Conditions suitable for conjugation mean that the temperature of the mixed culture is 34-41°C, preferably 35-39°C, more preferably 36-38°C. The culture condition for conjugation is 140 rpm-220 rpm constant temperature shaker, preferably 150 rpm-210 rpm, and also preferably 160 rpm-200 rpm. Joining time is 8-15 h. Also preferably 8-12h.

优选地,第一目标菌株和第二目标菌株的细菌量预置为109、1010、1011 CFU/mL。Preferably, the bacterial counts of the first target strain and the second target strain are preset to be 109, 1010, and 1011 CFU/mL.

本发明的待测样本是指任何来源的样本,包括但不限于来源于水体的水样或来自土壤的土样。可以理解的是,待测样本可以来源于上述水体或土壤的任意的植物或动物样本。The sample to be tested in the present invention refers to a sample from any source, including but not limited to a water sample from a water body or a soil sample from soil. It can be understood that the sample to be tested can be derived from any plant or animal sample of the above-mentioned water body or soil.

步骤(3)step (3)

步骤(3)中,采用特定波长激光进行流式细胞仪荧光定量。流式细胞仪的类型不特别限定,只要其具有多荧光通道即可。In step (3), a specific wavelength laser is used for flow cytometry fluorescence quantification. The type of flow cytometer is not particularly limited as long as it has multiple fluorescence channels.

本发明中,根据流式细胞仪不同的荧光通道测定的细菌量结果,从而能够计算待测样中耐药基因迁移频率。采用流式细胞仪识别荧光,能够根据供体、受体、接合子不同的荧光颜色进行准确识别并计数分选。In the present invention, the migration frequency of the drug-resistant gene in the sample to be tested can be calculated according to the results of the amount of bacteria measured by different fluorescent channels of the flow cytometer. Flow cytometry is used to identify fluorescence, which can be accurately identified and counted and sorted according to the different fluorescent colors of donors, acceptors, and zygotes.

优选地,步骤(3)中测定荧光结果时,进行梯度稀释以选择最佳浓度条件下收集荧光结果,如按吸光度为OD600 nm进行上机样品的预处理,预置范围为0.5-0.7。更优选地,步骤(3)中通过测定大肠杆菌K12荧光信号和大肠杆菌DH5α荧光信号以排除单荧光干扰,收集的细菌量预设为5000-10000个,收集到的细菌以荧光散点的方式分布在坐标轴内。Preferably, when measuring the fluorescence result in step (3), perform gradient dilution to select the optimal concentration to collect the fluorescence result, such as pretreatment of the sample on the machine according to the absorbance of OD600 nm, and the preset range is 0.5-0.7. More preferably, in step (3), by measuring the fluorescence signal of Escherichia coli K12 and the fluorescence signal of Escherichia coli DH5α to exclude single fluorescence interference, the amount of bacteria collected is preset as 5000-10000, and the bacteria collected are displayed in the form of fluorescence scatter distributed on the axis.

本发明的步骤(3)中,根据不同通道收集的荧光信号比计算接合频率,优选地,抗生素耐药基因的水平迁移的频率=(绿色荧光信号通道细菌检测量-绿色荧光信号通道:红色荧光信号通道细菌检测量)/(细菌总量-红色荧光信号通道细菌检测量)。在具体实施方案中,Ch02通道收集sfgfp荧光蛋白阳性信号的细菌量,Ch06通道收集mCherry荧光蛋白阳性通道的细菌量,双荧光细菌则在Ch02和Ch06通道同时出现荧光信号,接合子则在Ch02通道出现荧光信号,ARG的水平迁移的频率=(Ch02细菌检测量-Ch02:Ch06细菌检测量)/(细菌总量-Ch06细菌检测量)。In the step (3) of the present invention, according to the fluorescent signal ratio that different channels collect, calculate conjugation frequency, preferably, the frequency of the horizontal migration of antibiotic resistance gene=(green fluorescent signal channel bacterial detection amount-green fluorescent signal channel:red fluorescence signal channel bacteria detection amount)/(total amount of bacteria-red fluorescent signal channel bacteria detection amount). In a specific embodiment, the Ch02 channel collects the amount of bacteria with sfgfp fluorescent protein positive signal, the Ch06 channel collects the bacterial amount of mCherry fluorescent protein positive channel, and the dual-fluorescent bacteria show fluorescent signals at the same time in the Ch02 and Ch06 channels, and the zygote is in the Ch02 channel A fluorescent signal appears, and the frequency of horizontal migration of ARG=(detected amount of bacteria Ch02-Ch02: detected amount of bacteria Ch06)/(total amount of bacteria-detected amount of bacteria Ch06).

本发明中,由步骤(2)得到的接合液直接可以进行流式细胞仪计数,无需进行多次培养,保证了原接合环境下接合子的初始生长状况,且能有效收集部分无法进行培养的接合子的数量,提高接合频率的准确程度。此外,接合子不仅包括可培养部分菌群,也包括了不可培养部分的菌群,计算的接合频率更准确,且减少了在多次培养中带来的实验误差。In the present invention, the conjugation fluid obtained in step (2) can be directly counted by flow cytometry without multiple cultures, which ensures the initial growth status of the zygote in the original conjugation environment, and can effectively collect some of the zygotes that cannot be cultured. The number of zygotes increases the accuracy of the frequency of zygoses. In addition, the zygote includes not only the culturable part of the flora, but also the non-culturable part of the flora, the calculated conjugation frequency is more accurate, and the experimental error caused by multiple cultures is reduced.

本领域技术人员应理解,在上述步骤(1)-(3)前后,或这些任意步骤之间还可包含其他步骤或操作,例如进一步优化和/或改善本发明所述的方法。Those skilled in the art should understand that other steps or operations may also be included before and after the above steps (1)-(3), or between any of these steps, such as further optimizing and/or improving the method of the present invention.

本发明构建的双荧光耐药性大肠杆菌作为研究抗生素耐药基因的水平接合转移的供体菌,甚至还可以通过荧光信号对耐药基因进入植物或水生生物肠道进行快速定位,从而实现耐药基因迁移可视化。The double-fluorescent drug-resistant Escherichia coli constructed by the present invention is used as the donor bacteria for studying the horizontal conjugation transfer of antibiotic resistance genes, and can even quickly locate the drug-resistant genes entering the intestinal tract of plants or aquatic organisms through fluorescent signals, so as to realize resistance Pharmacogene migration visualization.

实施例Example

本实施例为评估抗生素耐药基因迁移风险的方法,具体如下。This example is a method for assessing the risk of antibiotic resistance gene transfer, as follows.

(1) 从-80℃冰箱取出红色荧光大肠杆菌K12、绿色荧光大肠杆菌DH 5α,活化后涂布,检验红色大肠杆菌、绿色荧光大肠杆菌的荧光蛋白是否正常表达。(1) Take out red fluorescent Escherichia coli K12 and green fluorescent Escherichia coli DH5α from the -80°C refrigerator, apply after activation, and check whether the fluorescent proteins of red fluorescent Escherichia coli and green fluorescent Escherichia coli are normally expressed.

(2) 分别挑选上述两株大肠杆菌在LB培养液中培养至对数生长期,其中培养绿色大肠杆菌DH 5α的LB培养液含有100 μg/mL的氨苄青霉素、50 μg/mL的卡那霉素和10 μg/mL的盐酸四环素。(2) Select the above two strains of Escherichia coli and culture them to logarithmic growth phase in LB culture medium, in which the LB culture medium for cultivating Escherichia coli DH 5α contains 100 μg/mL ampicillin, 50 μg/mL kanamycin and tetracycline hydrochloride at 10 μg/mL.

(3) 用生理盐水或无菌的磷酸盐缓冲液(0.1 mM)洗涤并稀释大肠杆菌K12和大肠杆菌DH 5α至细菌数量分别达到1010 CFU/mL,得到预接合菌液。(3) Wash and dilute Escherichia coli K12 and Escherichia coli DH 5α with physiological saline or sterile phosphate buffer (0.1 mM) until the number of bacteria reaches 1010 CFU/mL respectively to obtain a preconjugated bacterial solution.

(4) 以红色大肠杆菌K12作为受体菌,绿色大肠杆菌DH 5α作为供体菌,按供体菌:受体菌:LB培养基=1:1:3比例进行接合,接合总体系设计为20 mL,接合时间为12 h。(4) Red Escherichia coli K12 was used as the recipient bacterium, green Escherichia coli DH 5α was used as the donor bacterium, and the conjugation was carried out according to the ratio of donor bacterium:recipient bacterium:LB medium=1:1:3, and the overall conjugation system was designed as 20 mL, the binding time is 12 h.

(5) 取接合液涂布至LB固体培养基,培养18 h后利用倒置荧光显微镜检查每个单菌落的荧光信号,并挑选出具有双荧光信号的菌落。(5) Take conjugation fluid and apply it to LB solid medium. After 18 hours of culture, use an inverted fluorescence microscope to check the fluorescence signal of each single colony, and select colonies with double fluorescence signals.

(6) 将挑选出来的双荧光信号菌落进行二次LB液体扩培,分别吸取2 mL的菌液至24孔细胞培养板,利用倒置荧光显微镜进行荧光信号观察。(6) The selected double fluorescent signal colonies were subjected to secondary LB liquid expansion, and 2 mL of the bacterial liquid was pipetted into a 24-well cell culture plate, and the fluorescent signal was observed with an inverted fluorescence microscope.

(7) 挑选其中红色、绿色荧光信号均稳定孔的细菌液进行平板划线以分离单菌落,如图1所示。(7) Select the bacterial solution in which the red and green fluorescent signals are stable, and streak the plate to separate single colonies, as shown in Figure 1.

(8) 对分离出来的单菌落用倒置荧光显微镜进行荧光信号观察,重复多次以筛选出荧光信号最佳、生长条件最好的双色荧光大肠杆菌作为目标菌株,如图2所示,图2中双色荧光大肠杆菌表现在488 nm和581 nm激发波长下均出现稳定的荧光信号。(8) Observe the fluorescence signal of the isolated single colony with an inverted fluorescence microscope, and repeat it several times to screen out the double-color fluorescent E. coli with the best fluorescence signal and the best growth conditions as the target strain, as shown in Figure 2, Figure 2 The medium two-color fluorescent E. coli showed stable fluorescent signals at both 488 nm and 581 nm excitation wavelengths.

(9) 从热带爪蛙养殖缸中吸取10 mL的粪水混合物,高速离心后轻轻吸去上清液,并用移液器吸取1 mL的沉淀物至LB培养基中,37℃,180 rpm条件下培养24 h。(9) Draw 10 mL of feces-water mixture from the tropical Xenopus frog culture tank, gently absorb the supernatant after high-speed centrifugation, and use a pipette to draw 1 mL of the precipitate into the LB medium, 37 ° C, 180 rpm Incubate under the condition for 24 h.

(10) 将上述菌液进行梯度稀释后,取100 μL涂布至LB固体培养基中37℃培养24h。(10) After the above bacterial solution was serially diluted, 100 μL was applied to LB solid medium and cultured at 37°C for 24 hours.

(11) 挑选培养皿中具有不同菌落形貌特征的单菌落进行LB液体扩培,并用土霉素、罗红霉素、磺胺、卡那霉素、氨苄青霉素、阿莫西林的药敏片检测不同菌液的敏感性,最终选择其中对多种抗生素敏感的细菌进行菌种鉴定,确定为嗜水气单胞菌。(11) Select a single colony with different colony morphology characteristics in the petri dish for LB liquid expansion, and use the drug-sensitive tablets of oxytetracycline, roxithromycin, sulfonamide, kanamycin, ampicillin, and amoxicillin to detect The sensitivity of different bacterial solutions, and finally select the bacteria that are sensitive to multiple antibiotics for bacterial species identification, and determine that it is Aeromonas hydrophila.

(12) 采用生理盐水洗涤并调整过夜培养的双色荧光细菌(供体菌)、嗜水气单胞菌(受体菌)后8000xg离心6 min收集沉淀物,用LB培养基重悬收集细菌使菌数量达到1010CFU/mL。(12) Wash and adjust the overnight cultured two-color fluorescent bacteria (donor bacteria) and Aeromonas hydrophila (recipient bacteria) with normal saline, centrifuge at 8000xg for 6 min to collect the precipitate, and resuspend the collected bacteria in LB medium for use. The number of bacteria reached 1010CFU/mL.

(13) 取珠江水、人工湖水、湖水和消毒出水作为待测水样,去离子水作为空白对照,待测水样经0.22 μm有机滤膜进行过膜除菌处理,得到待测过膜水样。(13) Take the Pearl River water, artificial lake water, lake water and disinfection effluent as water samples to be tested, and deionized water as a blank control. The water samples to be tested are treated with a 0.22 μm organic filter membrane for sterilization, and the membrane water to be tested is obtained. Sample.

(14) 取已调整好的双色荧光细菌(供体菌)、嗜水气单胞菌(受体菌)各4 mL加入17 mL的各待测过膜水样(含5 mL LB培养液)中,于37℃±2℃,180 rpm恒温摇床中培养12h,得到接合液。(14) Take 4 mL each of the adjusted two-color fluorescent bacteria (donor bacteria) and Aeromonas hydrophila (recipient bacteria) and add 17 mL of each membrane-passed water sample to be tested (including 5 mL LB culture solution) cultured in a constant temperature shaker at 37°C±2°C and 180 rpm for 12 hours to obtain conjunctive fluid.

(15) 取上述接合液8 mL于离心机中8000xg离心8 min,弃滤液,用8 mL磷酸盐缓冲液(0.1 mM)重复洗涤菌液3次后,调整至OD600nm≈0.7。(15) Take 8 mL of the above junction solution and centrifuge at 8000xg for 8 min in a centrifuge, discard the filtrate, wash the bacterial solution with 8 mL phosphate buffer (0.1 mM) repeatedly for 3 times, and adjust to OD600nm≈0.7.

(16) 将上述预处理后的接合液用70μm无菌细胞筛过膜后,于1.5 mL离心管收集1mL菌液,利用流式细胞仪采集荧光信号,设置收集的细胞总量为10000个,以488 nm激发光波长于Ch02通道采集绿色荧光蛋白(sfgfp)信号的细菌量,以581nm激发光波长于Ch06通道采集红色荧光蛋白(mCherry)信号的细菌量。(16) After the above-mentioned pretreated conjugation fluid was sieved with 70 μm sterile cells, collect 1 mL of the bacterial liquid in a 1.5 mL centrifuge tube, collect fluorescence signals by flow cytometry, and set the total number of collected cells to 10,000. The bacterial count of green fluorescent protein (sfgfp) signal was collected in Ch02 channel with 488 nm excitation light wavelength, and the bacterial count of red fluorescent protein (mCherry) signal was collected in Ch06 channel with 581 nm excitation light wavelength.

在待测水样添加双色大肠杆菌、敏感嗜水气单胞菌共培养后的流式细胞成像结果如图3所示,图3中,嗜水气单胞菌作为受体菌在Ch02和Ch06通道均未出现荧光信号,双色荧光细菌作为供体菌分别在Ch02和Ch06通道出现出明显的绿色、红色荧光信号;细菌共培养后,双色荧光细菌由于质粒的迁移在Ch02通道失去绿色荧光信号,只在Ch06通道出现单独的红色荧光信号,而嗜水气单胞菌由于获得质粒在Ch02通道出现单独的绿色荧光信号,即为接合子。Figure 3 shows the flow cytometric imaging results after adding two-color Escherichia coli and sensitive Aeromonas hydrophila to the water sample to be tested. In Figure 3, Aeromonas hydrophila was used as the recipient bacteria in Ch02 and Ch06 There was no fluorescent signal in any channel, and the two-color fluorescent bacteria as the donor bacteria showed obvious green and red fluorescent signals in the Ch02 and Ch06 channels respectively; after bacterial co-cultivation, the two-color fluorescent bacteria lost the green fluorescent signal in the Ch02 channel due to the migration of the plasmid, Only a single red fluorescent signal appears in the Ch06 channel, while Aeromonas hydrophila shows a separate green fluorescent signal in the Ch02 channel due to the obtained plasmid, which is the zygote.

(17) ARG的水平迁移的频率=(Ch02细菌检测量-Ch02:Ch06细菌检测量)/(细菌总量-Ch06细菌检测量),绘制迁移风险计算结果图4。图4可知,去离子水相比较于其他地表水和消毒出水,抗性基因的迁移频率最高;消毒出水相比较于地表水也呈现出较高的接合频率,地表水中,人工湖水的抗性基因迁移频率最低,符合预期。且根据综合水质条件的不同,迁移频率检测差异性显著,说明本申请的方法可快速评估多种待测水样水质条件(pH、电导率、COD、抗生素及其他有机物质)下抗生素耐药基因迁移的风险。(17) Frequency of horizontal migration of ARG=(Ch02 bacterial detection amount-Ch02:Ch06 bacterial detection amount)/(Total amount of bacteria-Ch06 bacterial detection amount), draw migration risk calculation results in Figure 4. Figure 4 shows that compared with other surface water and disinfection effluent, deionized water has the highest migration frequency of resistance genes; compared with surface water, sterilized water also shows a higher conjugation frequency, surface water, artificial lake water resistance gene The migration frequency was the lowest, as expected. And according to the different comprehensive water quality conditions, the migration frequency detection difference is significant, indicating that the method of the present application can quickly evaluate the antibiotic resistance genes under the water quality conditions (pH, conductivity, COD, antibiotics and other organic substances) of various water samples to be tested risk of migration.

尽管本发明已经参考示例性实施方案进行了描述,但应理解本发明不限于公开的示例性实施方案。在不背离本发明的范围或精神的情况下,可对本发明说明书的示例性实施方案做多种调整或变化。权利要求的范围应基于最宽的解释以涵盖所有修改和等同结构与功能。While the present invention has been described with reference to exemplary embodiments, it is to be understood that the invention is not limited to the disclosed exemplary embodiments. Various adaptations or changes may be made to the illustrated exemplary embodiments of the invention without departing from the scope or spirit of the invention. The scope of the claims should be based on the broadest interpretation to cover all modifications and equivalent structures and functions.

Claims (2)

1. A method for evaluating the migration risk of antibiotic drug resistance genes of water samples to be detected with various water qualities under different environmental conditions is characterized by comprising the following steps of:
(1) Providing a first target strain and a second target strain, wherein the first target strain has a bifluorescent signal, the second target strain is aeromonas hydrophila with multiple antibiotic susceptibility, the first target strain is a recipient strain of escherichia coli K12 whose genome carries mCherry red fluorescent protein, an donor strain of escherichia coli DH5 alpha carrying sfgfp green fluorescent protein is selected, and the donor strain: the recipient bacterium: LB broth =1:1-2:1-5, the jointing time is 5-12h, the culture temperature of the donor bacteria, the acceptor bacteria and the jointing liquid is 34-41 ℃, and the culture condition for jointing is a constant temperature shaking table at 140-220 rpm; the donor bacterium has antibiotic resistance or carries a drug-resistant gene;
(2) The first target strain and the second target strain are resuspended by LB culture solution to make the number of bacteria reach 10 10 CFU/mL, enabling the first target strain to contact with the second target strain in a water sample to be detected after being subjected to membrane filtration sterilization by an organic filter membrane under the condition suitable for conjugation to obtain a conjugant, wherein the condition suitable for conjugation is that the conjugation temperature is 34-39 ℃, the constant temperature shaking table at 150-200 rpm is adopted, and the conjugation time is 5-12h;
(3) Performing fluorescence detection on the zygote processed in the step (2) by adopting a flow cytometer;
the frequency of horizontal migration of antibiotic resistance genes = (green fluorescent signal channel bacterial detection amount-green fluorescent signal channel bacterial detection amount: red fluorescent signal channel bacterial detection amount)/(total amount of bacteria-red fluorescent signal channel bacterial detection amount).
2. The method for evaluating the migration risk of the antibiotic resistance genes of the water samples to be tested with various water qualities under different environmental conditions according to claim 1, wherein the antibiotic comprises at least one of tetracycline, ampicillin and kanamycin, or a combination thereof; the drug resistance gene includes at least one of tetA, tnPR, and aphA or a combination thereof.
CN202210407473.8A 2022-04-19 2022-04-19 Method for evaluating migration risk of antibiotic resistance gene Active CN114509420B (en)

Priority Applications (1)

Application Number Priority Date Filing Date Title
CN202210407473.8A CN114509420B (en) 2022-04-19 2022-04-19 Method for evaluating migration risk of antibiotic resistance gene

Applications Claiming Priority (1)

Application Number Priority Date Filing Date Title
CN202210407473.8A CN114509420B (en) 2022-04-19 2022-04-19 Method for evaluating migration risk of antibiotic resistance gene

Publications (2)

Publication Number Publication Date
CN114509420A CN114509420A (en) 2022-05-17
CN114509420B true CN114509420B (en) 2022-12-13

Family

ID=81555127

Family Applications (1)

Application Number Title Priority Date Filing Date
CN202210407473.8A Active CN114509420B (en) 2022-04-19 2022-04-19 Method for evaluating migration risk of antibiotic resistance gene

Country Status (1)

Country Link
CN (1) CN114509420B (en)

Families Citing this family (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN114231550A (en) * 2021-11-30 2022-03-25 北京农业生物技术研究中心 Method for capturing conjugation type plasmid carrying antibiotic resistance gene in breeding environment
CN114262715B (en) * 2021-12-28 2023-07-28 中国环境科学研究院 Method for evaluating environmental health risk of resistance genes in compost products
CN115062933B (en) 2022-06-01 2023-04-18 生态环境部南京环境科学研究所 Multi-level risk assessment method for microbial drug resistance of antibiotic residues in water environment

Citations (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN110305826A (en) * 2019-06-04 2019-10-08 军事科学院军事医学研究院环境医学与作业医学研究所 A double-fluorescent-labeled recombinant bacterium, its preparation method, and its application in the study of drug-resistant gene transfer in vivo
CN112266928A (en) * 2020-09-21 2021-01-26 西北大学 A method for detecting horizontal transfer of multidrug-resistant plasmids
CN112877396A (en) * 2021-01-18 2021-06-01 广东工业大学 Method for evaluating migration risk of resistance gene
CN114231550A (en) * 2021-11-30 2022-03-25 北京农业生物技术研究中心 Method for capturing conjugation type plasmid carrying antibiotic resistance gene in breeding environment
CN114350740A (en) * 2022-01-25 2022-04-15 广东工业大学 Method for regulating and controlling drug-resistant gene junction transfer frequency by sublethal photocatalysis and application thereof

Patent Citations (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN110305826A (en) * 2019-06-04 2019-10-08 军事科学院军事医学研究院环境医学与作业医学研究所 A double-fluorescent-labeled recombinant bacterium, its preparation method, and its application in the study of drug-resistant gene transfer in vivo
CN112266928A (en) * 2020-09-21 2021-01-26 西北大学 A method for detecting horizontal transfer of multidrug-resistant plasmids
CN112877396A (en) * 2021-01-18 2021-06-01 广东工业大学 Method for evaluating migration risk of resistance gene
CN114231550A (en) * 2021-11-30 2022-03-25 北京农业生物技术研究中心 Method for capturing conjugation type plasmid carrying antibiotic resistance gene in breeding environment
CN114350740A (en) * 2022-01-25 2022-04-15 广东工业大学 Method for regulating and controlling drug-resistant gene junction transfer frequency by sublethal photocatalysis and application thereof

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
细菌耐药基因在斑马鱼体内定植、转移规律及机制研究;付佳伦;《中国优秀博硕士学位论文全文数据库(博士) 医药卫生科技辑》;20180115(第1期);第Ⅰ-Ⅲ页,第67-87页 *

Also Published As

Publication number Publication date
CN114509420A (en) 2022-05-17

Similar Documents

Publication Publication Date Title
CN114509420B (en) Method for evaluating migration risk of antibiotic resistance gene
AU2013243378B2 (en) Sample preparation for flow cytometry
RU2517618C2 (en) Method and system for determining quality of cultivated cells
CN111164218A (en) Method for determining the concentration of intact microorganisms in a sample
CN110760559B (en) Quick microorganism antibiotic sensitivity detection method
GB2593360A (en) Antimicrobial susceptibility assay and kit
CN102288586A (en) Method for determining minimal inhibitory concentration of drug
Ootsubo et al. Seven‐hour fluorescence in situ hybridization technique for enumeration of Enterobacteriaceae in food and environmental water sample
Yin et al. Establishment and application of a novel fluorescence-based analytical method for the rapid detection of viable bacteria in different samples
Chen et al. Quantifying the viability of lactic acid bacteria using ratiometric fluorescence assays
Fontana et al. Use of flow cytometry for rapid and accurate enumeration of live pathogenic Leptospira strains
Caro et al. Physiological changes of Salmonella typhimurium cells under osmotic and starvation conditions by image analysis
CN103014120B (en) Trace mycobacterium susceptibility test method
JPH0383598A (en) Rapid method for inspecting microorganism
CN107287275B (en) Culture medium, kit containing culture medium and application of culture medium
EP2009110A1 (en) Rapid enumeration of antimicrobial resistant organisms using the Most Probable Number method
ES2966679T3 (en) Methods and compositions to improve the detection of microorganisms
Fung Rapid methods and automation in food microbiology: 25 years of development and predictions
US20190345530A1 (en) Spectrometer compatible vacuum ampoule detection system for rapidly diagnosing and quantifying viable bacteria in liquid samples
Fung Rapid methods and automation in microbiology 25 years of developments and predictions
KR101106616B1 (en) Method and apparatus for quantitative analysis of membrane contamination using fluorescence protein microorganism
Tarroza et al. Utilization of hydrated petrifilm coupled with filtration in the detection and enumeration of escherichia coli in water samples
Hart Antibiotic Resistance of Laboratory E. coli Strains
US20240192199A1 (en) Microfluidic-based Device For In Vivo Wound Infection Model And Uses Thereof
KR102096662B1 (en) Reagent for the selection assay of acinetobacter baumannii like gram negative bacteria and selection assay of acinetobacter baumannii like gram negative bacteria using the same

Legal Events

Date Code Title Description
PB01 Publication
PB01 Publication
SE01 Entry into force of request for substantive examination
SE01 Entry into force of request for substantive examination
GR01 Patent grant
GR01 Patent grant