CN114486432A - Novel high-flux half-moon-shaped carrier net for freezing double-beam extraction of transmission electron microscope sample - Google Patents
Novel high-flux half-moon-shaped carrier net for freezing double-beam extraction of transmission electron microscope sample Download PDFInfo
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Abstract
Description
技术领域technical field
本发明提供一种冷冻双束提取透射电镜样品的新型高通量半月形载网,属于冷冻电子断层成像技术领域。The invention provides a novel high-throughput half-moon-shaped carrier net for freezing double-beam extraction transmission electron microscope samples, belonging to the technical field of cryo-electron tomography.
背景技术Background technique
冷冻电子断层成像技术是一项高分辨、跨尺度的原位冷冻电镜技术,可以获得细胞和组织样品原位三维高分辨率超微结构、生物大分子的原位结构信息以及蛋白质机器原位相互作用信息。相比传统的冷冻电镜方法,冷冻电子断层成像的原始数据增加了精确的Z轴信息,因此对样品纯度及组装严格性要求较低,且在制备样品过程中无需使其脱离原生环境,获得的结构更具生理意义。随着它的日益完善,从病毒到细菌、细胞甚至组织维度间的结构生物学空白将得到填补。然而该技术要求样品的厚度必须在300nm以下,获取高分辨率信息则需要更薄150nm以下的样品,但为了研究生物组织样品原位状态的结构,通常需要利用高压冷冻等技术对生物组织样品进行冷冻固定。固定后的样品厚度一般都在100μm左右,如何制备出适合冷冻电子断层成像技术研究的高质量的生物组织样品切片是原位结构生物学领域面临的一个重要技术问题。最新冷冻聚焦离子束中的纳米机械提取技术可以实现在全程冷冻的条件下对生物组织样品进行切片提取,解决了较厚生物组织样品制备的困难。Cryo-electron tomography is a high-resolution, cross-scale in situ cryo-electron microscopy technique, which can obtain in situ three-dimensional high-resolution ultrastructure of cell and tissue samples, in situ structural information of biological macromolecules, and in situ interaction of protein machinery. Action information. Compared with the traditional cryo-electron microscopy method, the raw data of cryo-electron tomography adds accurate Z-axis information, so the requirements for sample purity and assembly rigor are lower, and there is no need to remove the sample from the original environment during the preparation of the sample. The structure is more physiological. As it becomes more refined, gaps in structural biology will be filled, from viruses to bacteria, cells and even tissue dimensions. However, this technique requires that the thickness of the sample must be below 300 nm, and to obtain high-resolution information, a thinner sample of 150 nm or less is required. However, in order to study the structure of biological tissue samples in situ, it is usually necessary to use high-pressure freezing and other techniques for biological tissue samples. Freeze fixed. The thickness of fixed samples is generally about 100 μm. How to prepare high-quality biological tissue sample slices suitable for cryo-electron tomography research is an important technical problem in the field of in situ structural biology. The nanomechanical extraction technology in the latest frozen focused ion beam can realize slice extraction of biological tissue samples under the condition of full freezing, which solves the difficulty of preparing thick biological tissue samples.
采用冷冻聚焦离子束纳米机械提取技术来制备冷冻透射电镜样品的一般步骤为:1.在生物样品表面沉积一层铂(Pt)保护层;2.在感兴趣区域用离子束进行刻蚀形成一个切块;3.用离子束对切块的底部与两侧进行刻蚀,仅一侧留数微米与切块相连作为支撑;4.将机械手(通常是钨针尖)尖端靠近切块,采用Pt沉积或反沉积方法将薄片粘在钨针尖上;5.将第3步留下的一侧用离子束刻蚀掉,将切块和样品脱离;6.通过机械控制系统将切块接近半月形载网的其中一齿;7.采用反沉积方法将切块粘在聚焦离子束载网上;8.采用聚焦离子束将钨针与薄片切断分离,完成提样;9.采用聚焦离子束将薄片进一步减薄至200nm以下完成冷冻透射电镜样品制备。The general steps for preparing cryo-TEM samples by cryo-focused ion beam nanomechanical extraction are: 1. Deposit a platinum (Pt) protective layer on the surface of the biological sample; 2. Etch the region of interest with an ion beam to form a Cut the block; 3. Etch the bottom and both sides of the block with an ion beam, leaving only a few microns on one side to connect to the block as a support; 4. Place the tip of the manipulator (usually a tungsten needle tip) close to the block, using Pt Deposition or reverse deposition method to stick the flake on the tip of the tungsten needle; 5. The side left in
从制样步骤可以看出,与常规冷冻聚焦离子束刻蚀不同,提取冷冻透射电镜样品除涉及样品刻蚀减薄外,还涉及冷冻切块的转移和粘接,所以新型载网的设计显得尤为重要,与冷冻样品提取的质量和效率密切相关,直接决定的实验是否可以进行。普通商业化的聚焦离子束的载网一般为半月形,半月中间有四个齿,所以提取的切块只能固定到齿的一侧。样品只有一端固定,这使得样品在减薄过程中薄片极易受力发生弯折和扭曲,影响薄片质量,最终影响透射电镜数据收集的质量。另一方面,由于进针角度的限制,一次性只能同时粘连4个样品,效率较低,无法实现大量样品的制备要求。因此迫切需要新的载网来满足高质量的冷冻切片的制备,并且在条件允许的情况下,尽量提升通量。It can be seen from the sample preparation steps that, different from conventional frozen focused ion beam etching, the extraction of frozen TEM samples involves not only sample etching and thinning, but also the transfer and bonding of frozen cut pieces. It is particularly important, which is closely related to the quality and efficiency of frozen sample extraction, and directly determines whether the experiment can be carried out. The carrier grid of common commercial focused ion beams is generally half-moon-shaped, and there are four teeth in the middle of the half-moon, so the extracted cut can only be fixed to one side of the teeth. Only one end of the sample is fixed, which makes the thin sheet extremely vulnerable to bending and twisting during the thinning process, which affects the quality of the thin sheet and ultimately the quality of TEM data collection. On the other hand, due to the limitation of the needle entry angle, only 4 samples can be adhered at the same time at one time, which is inefficient and cannot meet the preparation requirements of a large number of samples. Therefore, a new carrier grid is urgently needed to meet the preparation of high-quality cryosections, and to maximize the throughput when conditions permit.
如图1示意图所示,现有商业化的半月形载网具四齿结构,齿宽约为0.16mm,长约为0.8mm,齿间距约为0.12mm。如图2所示,冷冻样品提取出来以后,将其粘接到齿的侧边,实现样品的转移。As shown in the schematic diagram of Fig. 1, the existing commercial half-moon-shaped net carrier has a four-tooth structure, the width of the teeth is about 0.16mm, the length of the teeth is about 0.8mm, and the spacing between the teeth is about 0.12mm. As shown in Figure 2, after the frozen sample is extracted, it is bonded to the side of the tooth to realize the transfer of the sample.
由于现有商用的载网齿间距太大,通常大于0.16mm(切块面积通常在3~40μm),无法实现两边搭载,冷冻样品只能粘接到齿的一侧,因此只有一端能够支撑样品,所以在减薄的过程中会发生样品的弯折和卷曲,而且样品越薄弯折和卷曲越严重,如图3所示。样品在减薄过程中发生弯折和卷曲会有以下不足:(1)样品不能继续减薄,若继续减薄会使片子受力不均匀而发生破损,片子可使用面积大幅减小。(2)发生弯折或卷曲后影响透射电镜数据收集的质量。另外,由于商业化的半月形载网只能单边粘接,所以现有商用化的载网每次最多可装载4个样品,通量较低,导致制备样品时需要反复更换载网,影响实验效率。Because the spacing between the teeth of the existing commercial carrier mesh is too large, usually greater than 0.16mm (the cutting area is usually 3-40μm), it cannot be mounted on both sides, and the frozen sample can only be bonded to one side of the teeth, so only one end can support the sample , so the bending and curling of the sample will occur during the thinning process, and the thinner the sample, the more serious the bending and curling, as shown in Figure 3. The bending and curling of the sample during the thinning process will have the following shortcomings: (1) The sample cannot continue to be thinned. If the thinning continues, the sheet will be unevenly stressed and damaged, and the usable area of the sheet will be greatly reduced. (2) Bending or curling affects the quality of TEM data collection. In addition, since the commercial half-moon-shaped carrier grid can only be bonded on one side, the existing commercial carrier grid can load up to 4 samples at a time, and the throughput is low, which leads to the need to replace the carrier grid repeatedly when preparing samples, which affects experimental efficiency.
发明内容SUMMARY OF THE INVENTION
为了克服传统商业化聚焦离子束载网的上述现有技术的不足,本发明的目的在于提供一种冷冻双束提取透射电镜样品的新型高通量半月形载网,该载网可以实现切块的两端同时固定,减薄后不易发生弯折和卷曲。同时可以实现一个载网多个样品的粘接,提升了冷冻样品提取的通量。该新型冷冻聚焦离子束载网具有制备样品质量高、通量高,结构简单,容易加工,使用方便,与原有样品台匹配度高的特点。In order to overcome the above-mentioned deficiencies of the conventional commercialized focused ion beam carrier grids, the object of the present invention is to provide a novel high-throughput meniscus carrier grid for freezing double-beam extraction TEM samples, and the carrier grid can realize dicing Both ends are fixed at the same time, and it is not easy to bend and curl after thinning. At the same time, the bonding of multiple samples on one carrier network can be realized, which improves the throughput of frozen sample extraction. The novel frozen focused ion beam carrier grid has the characteristics of high quality of prepared samples, high throughput, simple structure, easy processing, convenient use, and high matching degree with the original sample stage.
针对现有商业化的载网不能两端粘接、通量低的问题,本发明提供的冷冻双束提取透射电镜样品的新型高通量半月形载网,包括半月形金、铜或钼的载网,所述的载网半径为1.5mm。Aiming at the problems that the existing commercial carrier nets cannot be bonded at both ends and the flux is low, the present invention provides a novel high-throughput half-moon-shaped carrier network for freezing double-beam extraction transmission electron microscopy samples, including half-moon-shaped gold, copper or molybdenum The carrier net, the radius of the carrier net is 1.5mm.
有两种结构:There are two structures:
在载网的弦处开设有四个齿;相邻的齿之间留有间隙;齿上还开设有垂直于弦的缝隙;每个所述的齿宽为0.16mm,长为0.8mm;所述的缝隙宽为0.008-0.03mm,长为0.3-0.8mm。所述的间隙的宽度可调。There are four teeth at the chord of the carrier net; a gap is left between adjacent teeth; a gap perpendicular to the chord is also opened on the teeth; each of the teeth is 0.16mm wide and 0.8mm long; Said gap is 0.008-0.03mm wide and 0.3-0.8mm long. The width of the gap is adjustable.
或者,在载网的弦处开设有多个空隙,空隙垂直于弦,相邻的空隙之间形成长条齿。所述的空隙宽度为0.08-0.03mm,长为0.3-0.8mm。所述的长条齿的宽度可调。Alternatively, a plurality of gaps are opened at the chords of the carrier net, the gaps are perpendicular to the chords, and long teeth are formed between adjacent gaps. The width of the gap is 0.08-0.03mm, and the length is 0.3-0.8mm. The width of the long tooth is adjustable.
本发明还可以通过其他方式实施,比如:The present invention can also be implemented in other ways, such as:
1.不通过空隙的形式将样品搭在齿的表面,例如在齿中间切槽,然后将切块卡在槽内起到固定作用。1. Lay the sample on the surface of the tooth in the form of no gap, for example, cut a groove in the middle of the tooth, and then clamp the cut block in the groove to fix it.
2.空隙的不以矩形的形式,例如以三角形,圆形等形状进行样品搭载。2. The voids are not in the form of rectangles, such as triangles, circles and other shapes for sample loading.
3.在本发明的基础上对设计的尺寸进行适量修改后以实现相近的功能。3. On the basis of the present invention, the size of the design is appropriately modified to achieve similar functions.
4.在本发明的基础上采用其他材料的载网进行设计。4. On the basis of the present invention, the carrier net of other materials is used for design.
本发明提供了一种可扩展性强、高通量、结构简单、便于加工、使用方便的新型载网,该载网结合冷冻聚焦离子束,可实现高质量、高通量冷冻透射电镜样品的制备。The invention provides a novel carrier network with strong scalability, high flux, simple structure, convenient processing and convenient use. The carrier network is combined with a frozen focused ion beam, which can realize high-quality and high-flux frozen transmission electron microscope samples. preparation.
附图说明Description of drawings
图1为现有技术中商业化半月形载网示意图;1 is a schematic diagram of a commercialized half-moon carrier network in the prior art;
图2为现有技术中商业化半月形载网粘接样品后的扫描电镜图;Fig. 2 is the scanning electron microscope image after the commercialized half-moon-shaped carrier grid has bonded samples in the prior art;
图3为现有技术中商业化半月形载网搭载的样品减薄后的扫描电镜图;Fig. 3 is the scanning electron microscope image after the thinning of the sample carried on the commercialized half-moon-shaped carrier net in the prior art;
图4为本发明第一种载网结构示意图;4 is a schematic diagram of a first carrier network structure of the present invention;
图5为本发明第一种载网的扫描电镜照片;Fig. 5 is the scanning electron microscope photograph of the first kind of carrier network of the present invention;
图6为本发明第一种载网搭载样品后的扫描电镜照片;Fig. 6 is the scanning electron microscope photograph after the first kind of carrier net of the present invention is loaded with sample;
图7为本发明第二种载网结构示意图;7 is a schematic diagram of a second carrier network structure of the present invention;
图8为本发明第二种载网的扫描电镜照片;Fig. 8 is the scanning electron microscope photograph of the second kind of carrier network of the present invention;
图9为本发明第二种载网搭载样品后的扫描电镜照片。FIG. 9 is a scanning electron microscope photograph of the second type of carrier grid of the present invention after the sample is mounted.
具体实施方式Detailed ways
结合实施例说明本发明的具体技术方案。The specific technical solutions of the present invention are described with reference to the embodiments.
冷冻双束提取透射电镜样品的新型高通量半月形载网,包括半月形金、铜或钼的载网1,所述的载网1半径为1.5mm。The novel high-throughput half-moon-shaped carrier grid for freezing double-beam extraction TEM samples includes a half-moon-shaped
有两种结构:There are two structures:
第一种是在半径为1.5mm的载网1上加工四个宽度为0.16mm,长度为0.8mm的齿2,齿2之间的间隙3为0.12mm。在此基础上,再在每个齿2上加工一个宽为0.008-0.03mm,长度为0.3-0.8mm的缝隙4。The first is to process four
提取出的样品可以实现两端同时固定,解决了减薄时样品弯折和卷曲的问题,其结构示意图如图4所示,其实物扫描电镜照片如图5所示,搭载样品后的扫描电镜照片如图6所示。图4-图6中的示例仅是该类载网中实施案例中的一种,本发明并不限制于此实施实例范围。The extracted sample can be fixed at both ends at the same time, which solves the problem of bending and curling of the sample during thinning. The schematic diagram of its structure is shown in Figure 4, and its actual SEM photo is shown in Figure 5. The photo is shown in Figure 6. The example in FIG. 4 to FIG. 6 is only one of the implementation cases in this type of carrier network, and the present invention is not limited to the scope of this implementation example.
其中缝隙4宽度的最小值0.008mm的设计根据是透射电镜数据收集时,片的宽度不小于0.008mm。宽度最大值0.03mm的选择是根据Ga离子束切割样品的效率和提取样品时粘接的牢固程度决定的,宽度值过大切割时比较耗费时间,另外切块过重也会引起提取样品时样品脱落。也可根据样品的尺寸来选择齿缝隙4的宽度。若采用其他切割效率高的离子源双束电镜,比如氙离子源,其宽度范围可以增加到0.008-0.1mm。缝隙4长度的选择是根据冷冻电镜数据收集时大角度倾转而不遮挡样品的长度来定的。The minimum value of the width of the slit 4 is 0.008mm, and the design is based on the fact that the width of the sheet is not less than 0.008mm when the transmission electron microscope data is collected. The selection of the maximum width of 0.03mm is based on the efficiency of Ga ion beam cutting the sample and the firmness of the adhesion when extracting the sample. If the width value is too large, it will take more time to cut. In addition, if the cutting block is too heavy, it will also cause the sample to be extracted when the sample is extracted. fall off. The width of the tooth gap 4 can also be selected according to the size of the sample. If other ion source dual beam electron microscopes with high cutting efficiency are used, such as xenon ion source, the width range can be increased to 0.008-0.1mm. The length of the slit 4 is selected according to the length of tilting at a large angle without blocking the sample during the collection of cryo-EM data.
第二种是在半径为1.5mm的载网1上直接加工多个宽为0.008-0.03mm,长度为0.3-0.8mm的空隙6,每两个空隙6之间的长条齿5以及空隙6的数量均可调。其结构示意图如图7所示,其实物扫描电镜照片如图8所示。搭载样品后的扫描电镜照片如图9所示。图7-图9中的示例仅是该类载网中实施案例中的一种,本发明中空隙6的数量以及长条齿5并不限于本实施案例,本发明并不限制于此实施实例范围。其中空隙6宽度的最小值0.008mm的设计根据是透射电镜数据收集时,片的宽度不小于0.008mm,空隙6宽度最大值0.03mm的选择是根据Ga离子束切割样品的效率和提取样品时粘接的牢固程度决定的,宽度值过大切割时比较好费时间,另外切块过重也会引起提取样品时样品脱落。也可根据样品的尺寸来选择齿中空隙的宽度。空隙长度的选择是根据冷冻电镜数据收集时大角度倾转而不遮挡样品的长度来定的。若采用其他切割效率高的离子源双束电镜,比如氙离子源,空隙6宽度宽度范围可以增加到0.008-0.1mm。The second is to directly process a plurality of
所述的第一种载网可以实现两边粘接,同样第二种载网空隙也可实现两边粘接和至少加载8个样品,大大提高制样效率。The first type of carrier net can be bonded on both sides, and the gaps of the second carrier net can also be bonded on both sides and loaded with at least 8 samples, which greatly improves the sample preparation efficiency.
所述的两类载网并不仅限于冷冻双束电镜样品制备,其也同样适用于常温双束电镜样品制备。The two types of carrier grids described are not limited to the preparation of frozen double-beam electron microscope samples, but are also applicable to the preparation of double-beam electron microscope samples at room temperature.
所述的两类载网并不仅限于实施案例中的尺寸,空隙宽度和长度、齿宽和齿长、齿间距的大小、空隙的数量等都是可调整的,尺寸的细微调整扔在本专利的保护范围之内。The two types of carrier nets described are not limited to the dimensions in the implementation case. The width and length of the gap, the width and length of the teeth, the size of the tooth spacing, the number of gaps, etc. are all adjustable, and the fine adjustment of the size is thrown in this patent. within the scope of protection.
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