CN113717873B - A kind of multi-tolerant Saccharomyces cerevisiae strain and its construction method and application - Google Patents
A kind of multi-tolerant Saccharomyces cerevisiae strain and its construction method and application Download PDFInfo
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Abstract
本发明公开了一种多重耐受性酿酒酵母菌株及其构建方法和应用,所述酿酒酵母菌株保藏于中国微生物菌种管理委员会普通微生物中心,保藏名称为SEB17,其保藏号为:CGMCC NO.22587,构建方法为:以菌株SEB14为出发菌株,将菌株SEB14的功能基因ENA5的启动子替换为TEF1的启动子,构建菌株SEB17。本发明所述菌株SEB17具有多重耐受性,同时具有耐受高乙醇、高温、高糖、高盐等多种环境胁迫的优点,能够适用于多种环境胁迫下物料发酵。
The invention discloses a multi-tolerant Saccharomyces cerevisiae strain and its construction method and application. The Saccharomyces cerevisiae strain is preserved in the General Microbiology Center of the China Microbiological Strain Management Committee, the preservation name is SEB17, and its preservation number is: CGMCC NO. 22587, the construction method is as follows: take the strain SEB14 as the starting strain, replace the promoter of the functional gene ENA5 of the strain SEB14 with the promoter of TEF1, and construct the strain SEB17. The bacterial strain SEB17 of the present invention has multiple tolerances and has the advantages of being tolerant to multiple environmental stresses such as high ethanol, high temperature, high sugar, and high salt, and can be applied to material fermentation under various environmental stresses.
Description
技术领域technical field
本发明涉及生物工程技术领域,具体涉及一种多重耐受性酿酒酵母菌株及其构建方法和应用。The invention relates to the technical field of bioengineering, in particular to a multi-tolerant Saccharomyces cerevisiae strain and its construction method and application.
背景技术Background technique
面对能源日益紧缺,环境污染问题日益严重的形势,迫切需要开发绿色、可再生的新型能源。对秸秆、废糖蜜等储量和产生量大的有机废弃物进行资源化利用生产清洁能源燃料乙醇,将可同时缓解能源和环境危机。燃料乙醇工业生产中若能实现超高浓度(VHG)发酵及高温发酵,可显著降低生产成本,减少废水排放量,降低环境污染负荷。因此,选育可耐受高乙醇、高温、高糖、高盐等多种环境胁迫的多重耐受性工业酿酒酵母菌株,具有重要的经济和环境意义。目前,对于酿酒酵母抗逆性的研究主要集中在单一耐受性的提高,育种的主要方法主要为诱变、驯化、基因组重排和基因工程等,而如何同时提高酿酒酵母的多重耐受性的研究非常有限。然而,多重耐受性酿酒酵母相比单耐受性酵母可以适用于多种实际物料的发酵从而具有更广泛的工业应用价值。Facing the increasingly scarce energy and the increasingly serious environmental pollution, it is urgent to develop green and renewable new energy sources. The resource utilization of organic wastes such as straw and waste molasses with large reserves and production volume to produce clean energy fuel ethanol will alleviate the energy and environmental crises at the same time. If ultra-high concentration (VHG) fermentation and high-temperature fermentation can be realized in the industrial production of fuel ethanol, production costs can be significantly reduced, waste water discharge can be reduced, and environmental pollution load can be reduced. Therefore, breeding multi-tolerant industrial Saccharomyces cerevisiae strains that can tolerate multiple environmental stresses such as high ethanol, high temperature, high sugar, and high salt has important economic and environmental significance. At present, the research on the stress resistance of Saccharomyces cerevisiae is mainly focused on the improvement of single tolerance. The main methods of breeding are mutagenesis, domestication, genome rearrangement and genetic engineering, etc. How to improve the multiple tolerance of Saccharomyces cerevisiae at the same time research is very limited. However, compared with single-tolerant yeast, multi-tolerant Saccharomyces cerevisiae can be applied to the fermentation of a variety of practical materials, so it has wider industrial application value.
发明内容Contents of the invention
本发明的目的在于提供一种多重耐受性酿酒酵母菌株,该菌株具有多重耐受性,同时具有耐受高乙醇、高温、高糖、高盐等多种环境胁迫的优点,能够适用于多种环境胁迫下物料发酵。The object of the present invention is to provide a kind of multi-tolerant Saccharomyces cerevisiae strain, this bacterial strain has multi-tolerance, has the advantage of being tolerant to various environmental stresses such as high ethanol, high temperature, high sugar, high salt simultaneously, can be applicable to many Fermentation of materials under various environmental stresses.
此外,本发明还提供一种多重耐受性酿酒酵母菌株的构建方法和应用。In addition, the present invention also provides a construction method and application of a multi-tolerant Saccharomyces cerevisiae strain.
本发明通过下述技术方案实现:The present invention realizes through following technical scheme:
一种多重耐受性酿酒酵母菌株,所述酿酒酵母菌株保藏于中国微生物菌种管理委员会普通微生物中心(CGMCC),保藏名称为SEB17,其保藏号为:CGMCC NO.22587,分类命名为Saccharomyces cerevisiae,保藏日期为2021年5月24日,保藏地址:中国北京市朝阳区北辰西路1号院3号,邮编:100101。A multi-tolerant Saccharomyces cerevisiae strain, the Saccharomyces cerevisiae strain is preserved in the General Microbiology Center (CGMCC) of China Microbiological Culture Management Committee, the preservation name is SEB17, and its preservation number is: CGMCC NO.22587, and the classification is named Saccharomyces cerevisiae , The preservation date is May 24, 2021, and the preservation address is: No. 3, Yard No. 1, Beichen West Road, Chaoyang District, Beijing, China, postcode: 100101.
本发明所述菌株SEB17具有多重耐受性,同时具有耐受高乙醇、高温、高糖、高盐等多种环境胁迫的优点,能够适用于多种环境胁迫下物料发酵。The bacterial strain SEB17 of the present invention has multiple tolerances and has the advantages of being tolerant to multiple environmental stresses such as high ethanol, high temperature, high sugar, and high salt, and can be applied to material fermentation under various environmental stresses.
一种多重耐受性酿酒酵母菌株的构建方法,以具有良好耐受性的工业菌株SEB14为出发菌株,将功能基因ENA5的启动子替换为在各胁迫下表达量较高且稳定的TEF1的启动子,获得高表达基因ENA5的菌株SEB17。A method for constructing a multi-tolerant Saccharomyces cerevisiae strain, using the industrial strain SEB14 with good tolerance as the starting strain, and replacing the promoter of the functional gene ENA5 with the promoter of TEF1, which has a high expression level and is stable under various stresses Son, get high expression gene ENA5 strain SEB17.
研究表明,通过基因工程手段敲除或者高表达一些转录因子或功能基因可以有效提高酿酒酵母的乙酸和糠醛等耐受性,因此,基因工程定向改造酿酒酵母对于其耐受表型的提升十分重要。本发明前期基于转录组学的研究发现在高乙醇、高温、高糖和高盐等多种胁迫条件下,工业酿酒酵母菌株SEB14中基因ENA5(编码P型ATP酶)均显著上调,且该基因与各基因之间关系最紧密。目前,仅有研究表明ENA5与真菌的耐盐性密切相关,在本发明中,首次发现ENA5与酿酒酵母的多重胁迫耐受性相关。Studies have shown that knocking out or overexpressing some transcription factors or functional genes through genetic engineering can effectively improve the tolerance of acetic acid and furfural in Saccharomyces cerevisiae. Therefore, directional transformation of Saccharomyces cerevisiae is very important for improving its tolerance . Based on the research of transcriptomics in the early stage of the present invention, it was found that under various stress conditions such as high ethanol, high temperature, high sugar and high salt, the gene ENA5 (encoding P-type ATPase) in the industrial Saccharomyces cerevisiae strain SEB14 was significantly up-regulated, and the gene most closely related to each gene. At present, only studies have shown that ENA5 is closely related to the salt tolerance of fungi. In the present invention, it is first found that ENA5 is related to the multiple stress tolerance of Saccharomyces cerevisiae.
具体地:specifically:
出发菌株:Starting strain:
出发菌株SEB14保藏于中国微生物菌种保藏管理委员会普通微生物中心,保藏号为CGMCCNo.19587。The starting strain SEB14 was deposited in the General Microorganism Center of China Committee for the Collection of Microbial Cultures with the preservation number CGMCCNo.19587.
培养基:Medium:
所用培养基如表1所示。若培养基为固体培养基,则在灭菌前加入2.0%的琼脂粉。灭菌条件为121℃,15min。所有的抗生素均在培养基灭菌后,待冷却至50~60℃后添加。The media used are listed in Table 1. If the medium is a solid medium, add 2.0% agar powder before sterilization. The sterilization condition is 121°C, 15min. All antibiotics are added after the medium is sterilized and cooled to 50-60°C.
表1培养基组成Table 1 Medium Composition
质粒、菌株及引物:Plasmids, strains and primers:
以良好耐受性的工业菌株SEB14(菌株保藏号:CGMCCNo.19587)为出发菌株,通过启动子替换的方法,将基因ENA5过表达获得菌株SEB17,其中所用质粒和菌株如表2所示;菌株转化所用引物及片段如表3所示;用于构建gRNA质粒的所需的同源壁序列和PAM位点(NGG)上游的20bp目标序列如表4所示。Taking the industrial strain SEB14 with good tolerance (strain preservation number: CGMCCNo.19587) as the starting strain, through the method of promoter replacement, the gene ENA5 was overexpressed to obtain the strain SEB17, wherein the plasmids and strains used are shown in Table 2; The primers and fragments used for transformation are shown in Table 3; the required homologous wall sequence and the 20bp target sequence upstream of the PAM site (NGG) used to construct the gRNA plasmid are shown in Table 4.
表2构建菌株SEB17过程中所用质粒及菌株信息Plasmids and strain information used in the process of constructing bacterial strain SEB17 in table 2
表3菌株转化所需引物及片段Table 3 Primers and fragments required for strain transformation
注:TG:gRNA加同源臂引物,RF:修复片段,Vp:验证引物;F:上游引物;R:下游引物Note: TG: gRNA plus homology arm primer, RF: repair fragment, Vp: verification primer; F: upstream primer; R: downstream primer
TEF1 F的序列号为SEQ ID No.1,TEF1 R的序列号为SEQ ID No.2,ENA5 TG F的序列号为SEQ ID No.3,ENA5 TG R的序列号为SEQ ID No.4,ENA5 RF F的序列号为SEQ IDNo.5,ENA5 RF R的序列号为SEQ ID No.6,ENA5 VP F的序列号为SEQ ID No.7,ENA5 VP R的序列号为SEQ ID No.8,Cas9-dg-F的序列号为SEQ ID No.9,Cas9-dg-R的序列号为SEQ IDNo.10,6006-F的序列号为SEQ ID No.11,6005-R序列号为SEQ ID No.12。The sequence number of TEF1 F is SEQ ID No.1, the sequence number of TEF1 R is SEQ ID No.2, the sequence number of ENA5 TG F is SEQ ID No.3, the sequence number of ENA5 TG R is SEQ ID No.4, The serial number of ENA5 RF F is SEQ ID No.5, the serial number of ENA5 RF R is SEQ ID No.6, the serial number of ENA5 V P F is SEQ ID No.7, and the serial number of ENA5 V P R is SEQ ID No. .8, the sequence number of Cas9-dg-F is SEQ ID No.9, the sequence number of Cas9-dg-R is SEQ ID No.10, the sequence number of 6006-F is SEQ ID No.11, and the sequence number of 6005-R It is SEQ ID No.12.
表4构建gRNA所需的同源臂序列和PAM位点(NGG)上游的20bp目标序列Table 4 constructs the required homology arm sequence of gRNA and the 20bp target sequence upstream of the PAM site (NGG)
注:N20:gRNA所含的PAM位点(NGG)上游的20bp的目标序列;下划线:PAM位点(NGG)Note: N20: 20bp target sequence upstream of the PAM site (NGG) contained in the gRNA; underline: PAM site (NGG)
tgR F的序列号为SEQ ID No.13,tgR R的序列号为SEQ ID No.14,ENA5的序列号为SEQ ID No.15。The sequence number of tgR F is SEQ ID No.13, the sequence number of tgR R is SEQ ID No.14, and the sequence number of ENA5 is SEQ ID No.15.
菌株SEB17的构建:Construction of strain SEB17:
1)、TEF1启动子(修复片段)的扩增1), amplification of TEF1 promoter (repair fragment)
以菌株SEB14的基因组DNA为模板,通过PCR扩增TEF1启动子(修复片段)(表5)。PCR反应体系和反应条件如表6所示。RF F/RF R为包含同源臂的TEF1的引物,序列如表3所示。利用1.5%的琼脂糖凝胶对PCR产物电泳(100V,32min),于EB染液中染色40min,紫外灯下观察目标条带。将所得PCR产物保存于-20℃冰箱,备用。Using the genomic DNA of strain SEB14 as a template, the TEF1 promoter (repair fragment) was amplified by PCR (Table 5). The PCR reaction system and reaction conditions are shown in Table 6. RFF/RFR is a primer for TEF1 containing a homology arm, and its sequence is shown in Table 3. The PCR product was electrophoresed on 1.5% agarose gel (100V, 32min), stained in EB staining solution for 40min, and the target band was observed under ultraviolet light. The resulting PCR products were stored in a -20°C refrigerator for future use.
表5TEF1启动子基因序列表Table 5 TEF1 promoter gene sequence list
表6PCR扩增TEF1启动子(修复片段)Table 6PCR amplification TEF1 promoter (repair fragment)
2)、构建双链gRNA片段:2), construction of double-stranded gRNA fragments:
在Saccharomyces Genome Database网站上查询目标基因启动子区域的碱基序列。再将该序列输入到Yeastriction,查找目标片段上PAM位点(NGG)上游的20bp目标序列。将包含上下游50bp同源臂和20bp目标序列(共120bp)的gRNA片段进行合成(片段序列见表3。待合成之后,用灭菌水稀释至10μM,后将两条互补链溶液按1:1混合(体积比),于水浴锅中95℃热击5min,获得双链gRNA片段。Query the base sequence of the promoter region of the target gene on the Saccharomyces Genome Database website. Then input the sequence into Yeastriction to search for the 20bp target sequence upstream of the PAM site (NGG) on the target fragment. Synthesize gRNA fragments containing upstream and downstream 50bp homology arms and 20bp target sequences (total 120bp) (see Table 3 for fragment sequences. After synthesis, dilute to 10μM with sterile water, and then dilute the two complementary strand solutions by 1: 1 mix (volume ratio), and heat shock at 95°C for 5 minutes in a water bath to obtain double-stranded gRNA fragments.
3)、扩增gRNA线性骨架3), amplified gRNA linear backbone
以pMEL13质粒为模板,扩增gRNA的线性骨架,PCR反应体系和反应条件如表7所示。利用1.5%的琼脂糖凝胶对PCR产物进行电泳(100V,32min),于EB染液中染色40min,紫外灯下观察是否有目标条带。将所得PCR产物保存于-20℃冰箱,备用。Using the pMEL13 plasmid as a template to amplify the linear backbone of gRNA, the PCR reaction system and reaction conditions are shown in Table 7. The PCR product was electrophoresed on 1.5% agarose gel (100V, 32min), stained in EB staining solution for 40min, and observed under ultraviolet light to see if there was a target band. The resulting PCR products were stored in a -20°C refrigerator for future use.
表7PCR扩增gRNA线性骨架Table 7PCR amplification gRNA linear backbone
4)、纯化修复片段(TEF1启动子)和gRNA线性骨架4), Purified repair fragment (TEF1 promoter) and gRNA linear backbone
由于PCR扩增产物中含有模板、DNA聚合酶和buffer,需要利用PCRPurification Kit纯化试剂盒进行纯化。具体步骤如下:Since the PCR amplification product contains template, DNA polymerase and buffer, it is necessary to use PCR Purification Kit purification kit for purification. Specific steps are as follows:
(1)取50-70μL PCR产物,加入5倍体积的溶液BB混匀,加入离心柱中,10000×g离心1min,弃流出液;(1) Take 50-70 μL of PCR product, add 5 times the volume of solution BB to mix, add to the spin column, centrifuge at 10000×g for 1 min, and discard the effluent;
(2)加入650μL溶液WB,10000×g离心1min,弃流出液;(2) Add 650 μL of solution WB, centrifuge at 10,000×g for 1 min, and discard the effluent;
(3)10000×g离心2min,彻底去除残留的WB;(3) Centrifuge at 10000×g for 2 minutes to completely remove residual WB;
(4)将离心柱放置于1.5mL离心管中,向柱中央加入30-50μL灭菌水,室温静置1-2min,10000×g离心1min,洗脱DNA。将所得DNA于-20℃保存。(4) Place the spin column in a 1.5mL centrifuge tube, add 30-50μL sterilized water to the center of the column, let stand at room temperature for 1-2min, and centrifuge at 10000×g for 1min to elute the DNA. The resulting DNA was stored at -20°C.
5)、gRNA线性骨架模板消化5), gRNA linear backbone template digestion
酶切消化体系和反应条件如表8所示。反应体系中所加的Quick cut Dpn1依据扩增gRNA线性骨架时所加的pMEL13模板量确定。经纯化获得gRNA线性骨架。The enzymatic digestion system and reaction conditions are shown in Table 8. The amount of Quick cut Dpn1 added in the reaction system is determined according to the amount of pMEL13 template added when amplifying the gRNA linear backbone. The gRNA linear backbone is obtained after purification.
表8gRNA线性骨架模板消化体系Table 8 gRNA linear backbone template digestion system
6)、Gibson连接gRNA片段和gRNA线性骨架6), Gibson connects the gRNA fragment and the gRNA linear backbone
将所得的gRNA片段和gRNA线性骨架通过Gibson Assembly试剂盒描述的方法进行Gibson连接,反应体系如表9所示。gRNA(120bp)和pMEL13-bachbone按质量比5:1加入连接体系中。将反应体系液于PCR仪上,50℃连接15min。取全部反应液转化至大肠杆菌中。然后,将菌液涂布于LB-Amp抗生素平板上。待菌株长出后,将其划线在LB-Kana抗生素平板上,37℃培养24h。将克隆子转接于含5mL LB+Kana液体培养基的试管中培养12-16h(160rpm,37℃)。收集菌体,利用SanPrep柱式质粒DNA小量抽提试剂盒,从大肠杆菌中提取gRNA质粒。利用1.5%的琼脂糖凝胶,对gRNA质粒进行电泳(100V,32min),于EB中染色40min,紫外灯下观察是否有目标条带。将所得的gRNA质粒进行测序确认,获得序列正确的gRNA质粒。The obtained gRNA fragments and gRNA linear backbone were subjected to Gibson ligation by the method described in the Gibson Assembly kit, and the reaction system is shown in Table 9. gRNA (120bp) and pMEL13-bachbone were added to the ligation system at a mass ratio of 5:1. The reaction system solution was placed on a PCR instrument, and ligated at 50°C for 15 minutes. All the reaction solution was transformed into Escherichia coli. Then, spread the bacterial solution on the LB-Amp antibiotic plate. After the strains grew out, they were streaked on LB-Kana antibiotic plates and cultured at 37°C for 24h. The clones were transferred to a test tube containing 5mL LB+Kana liquid medium and cultured for 12-16h (160rpm, 37°C). The bacteria were collected, and the gRNA plasmid was extracted from Escherichia coli using the SanPrep column plasmid DNA mini-extraction kit. Using 1.5% agarose gel, the gRNA plasmid was electrophoresed (100V, 32min), stained in EB for 40min, and observed under ultraviolet light to see if there was a target band. The resulting gRNA plasmid was sequenced and confirmed to obtain a gRNA plasmid with the correct sequence.
表9Gibson连接的反应体系Table 9 The reaction system of Gibson connection
7)、Cas9质粒7), Cas9 plasmid
从-80℃冰箱取出含Cas9质粒(Case9-NAT)的大肠杆菌菌保,将其划线于LB+NAT固体平板上,于37℃恒温培养箱中培养1d。用牙签挑取菌体于含5mL LB+NAT液体培养基中培养12-16h(160rpm,37℃)。收集菌体,利用SanPrep柱式质粒DNA小量抽提试剂盒,从大肠杆菌中提取Cas9质粒。在1.5%的琼脂糖凝胶对Cas9质粒进行电泳(100V,32min),于EB染液中染色40min,紫外灯下观察条带。The Escherichia coli cells containing the Cas9 plasmid (Case9-NAT) were taken out from the -80°C refrigerator, streaked on the LB+NAT solid plate, and cultured in a constant temperature incubator at 37°C for 1 day. Pick the bacteria with a toothpick and culture them in 5mL LB+NAT liquid medium for 12-16h (160rpm, 37°C). The bacteria were collected, and the Cas9 plasmid was extracted from Escherichia coli using the SanPrep column plasmid DNA mini-extraction kit. The Cas9 plasmid was electrophoresed on 1.5% agarose gel (100V, 32min), stained in EB staining solution for 40min, and the bands were observed under ultraviolet light.
8)、Cas9质粒转入目标酿酒酵母菌株8), Cas9 plasmid into the target Saccharomyces cerevisiae strain
(1)将目标菌株于2%YPD固体平板上活化24h,取适量菌体接种于含5mL 2%YPD液体培养基中培养16h(160rpm,30℃);(1) Activate the target bacterial strain on a 2% YPD solid plate for 24 hours, inoculate an appropriate amount of bacteria into 5 mL of 2% YPD liquid medium and cultivate it for 16 hours (160 rpm, 30° C.);
(2)取2-3mL菌液至300mL 2%YPD液体培养基中,29℃,180rpm培养2-3h。期间每隔1h取样,8,000×g离心2min,去培养液,将菌体用0.05mmol/L的EDTA-2Na溶液分散后,测定其在600nm下的吸光度;(2) Take 2-3mL bacterial liquid into
(3)当OD600达到0.2~0.3时,8,000×g离心2min收集菌体,用灭菌水将菌体洗涤2-3次,离心弃上清。然后用0.6mL灭菌水分散菌体,置于冰上备用;(3) When the OD 600 reaches 0.2-0.3, centrifuge at 8,000×g for 2 minutes to collect the bacteria, wash the bacteria 2-3 times with sterilized water, and discard the supernatant by centrifugation. Then disperse the bacteria with 0.6mL sterilized water, and put it on ice for later use;
(4)取配制好的鲑鱼精DNA(来源于鲑鱼睾丸),于沸水浴中加热5min,立即置于冰上,备用;(4) Take the prepared salmon sperm DNA (derived from salmon testes), heat it in a boiling water bath for 5 minutes, put it on ice immediately, and set aside;
(5)取1.5mL离心管,分别向其中加入60% PEG4000(110μL)、4M的醋酸锂溶液(5μL)和鲑鱼精DNA(12μL)。实验组中加入100ng Cas9质粒,对照组中加等量的无菌水,振荡混匀;(5) Take a 1.5 mL centrifuge tube and add 60% PEG4000 (110 μL), 4M lithium acetate solution (5 μL) and salmon sperm DNA (12 μL) into it respectively. Add 100ng Cas9 plasmid to the experimental group, add the same amount of sterile water to the control group, shake and mix;
(6)向上述离心管中加入50μL步骤(3)准备的宿主细胞,振荡混匀;(6) Add 50 μL of the host cells prepared in step (3) to the above centrifuge tube, shake and mix;
(7)42℃金属浴热击40-60min,期间每20min取出离心管并上下颠倒;(7) Heat shock in a metal bath at 42°C for 40-60 minutes, during which the centrifuge tubes were taken out every 20 minutes and turned upside down;
(8)8,000×g离心2min,弃转化液。用灭菌水将细胞洗涤2-3次,然后向离心管中加入1mL 2%YPD液体培养基,30℃、160rpm摇床培养4h;(8) Centrifuge at 8,000×g for 2 minutes, and discard the transformation solution. Wash the cells 2-3 times with sterilized water, then add
(9)8,000×g离心2min,弃培养液,用灭菌水洗涤2-3次。加1mL灭菌水分散菌体,取100μL菌悬液,涂布于含0.005% NAT的2%YPD平板上,置于恒温培养箱中30℃培养1~2天。(9) Centrifuge at 8,000×g for 2 minutes, discard the culture medium, and wash 2-3 times with sterile water. Add 1 mL of sterilized water to disperse the bacteria, take 100 μL of the bacterial suspension, spread it on a 2% YPD plate containing 0.005% NAT, and place it in a constant temperature incubator at 30°C for 1 to 2 days.
9)、Cas9质粒转化菌落PCR验证:9), Cas9 plasmid transformation colony PCR verification:
挑取2%YPD+NAT平板上的单个转化子,划线于2%YPD+NAT固体平板上,30℃培养24h,进行菌落PCR验证。具体步骤如下:Pick a single transformant on the 2% YPD+NAT plate, streak it on the 2% YPD+NAT solid plate, culture at 30°C for 24 hours, and perform colony PCR verification. Specific steps are as follows:
(1)从2%YPD+NAT平板上,挑取适量菌体于含95μL1%SDS和5μL 4mol/L的醋酸锂溶液的1.5mL离心管中,涡旋振荡;(1) From the 2% YPD+NAT plate, pick an appropriate amount of bacteria in a 1.5mL centrifuge tube containing 95 μL of 1% SDS and 5 μL of 4mol/L lithium acetate solution, and vortex;
(2)75℃热击10min;(2) Heat shock at 75°C for 10 minutes;
(3)向离心管中添加300μL的无水乙醇,涡旋振荡;(3) Add 300 μL of absolute ethanol to the centrifuge tube, and vortex;
(4)室温13000rpm离心3min,弃上清液,于37℃条件下干燥10min;(4) Centrifuge at room temperature at 13,000 rpm for 3 minutes, discard the supernatant, and dry at 37°C for 10 minutes;
(5)加入100μL灭菌水,涡旋振荡,室温13000rpm离心1min;(5) Add 100 μL of sterilized water, vortex, and centrifuge at room temperature at 13,000 rpm for 1 min;
(6)取1μL以上清液作为模板进行PCR验证,PCR反应体系和反应条件如表10所示;(6) Take more than 1 μL of the supernatant as a template for PCR verification, and the PCR reaction system and reaction conditions are shown in Table 10;
(7)利用1.5%的琼脂糖凝胶对PCR产物进行电泳(100V,32min),于EB染液中染色40min,紫外灯下观察是否有目标条带。(7) The PCR product was electrophoresed on 1.5% agarose gel (100V, 32min), stained in EB staining solution for 40min, and observed under ultraviolet light to see if there was a target band.
表10Cas9质粒验证PCR体系Table 10 Cas9 plasmid verification PCR system
10)、酵母转化10), yeast transformation
酵母转化的具体方法同8)、Cas9质粒转入目标酿酒酵母菌株,只是将步骤(5)改为:取若干个1.5mL离心管,分别向其中加入60% PEG4000(240μL)、4M的醋酸锂(9μL)和鲑鱼精DNA(25μL)。实验组中加入gRNA质粒(300-600ng)和修复片段(600-1400ng),对照组中加入等量的灭菌水,振荡混匀。The specific method of yeast transformation is the same as 8), the Cas9 plasmid is transferred into the target Saccharomyces cerevisiae strain, but the step (5) is changed to: take several 1.5mL centrifuge tubes, add 60% PEG4000 (240μL) and 4M lithium acetate to them respectively (9μL) and salmon sperm DNA (25μL). Add gRNA plasmid (300-600ng) and repair fragment (600-1400ng) to the experimental group, add the same amount of sterilized water to the control group, shake and mix.
11)、目标菌株转化菌落PCR验证11), target strain transformation colony PCR verification
从2%YPD+NAT+G418平板上随机挑取转化子,划线于2%YPD+NAT+G418固体平板上,30℃培养24h,参见Cas9质粒转化菌落PCR验证中方法进行菌落PCR验证。利用目标基因的验证引物(表3),扩增目标片段。其中,PCR反应体系和反应条件见表10,退火温度和片段延伸时间由具体的验证引物决定。Randomly pick transformants from the 2% YPD+NAT+G418 plate, streak on the 2% YPD+NAT+G418 solid plate, culture at 30°C for 24 hours, refer to the method in the PCR verification of the Cas9 plasmid transformed colony for colony PCR verification. Using the verified primers (Table 3) of the target gene, amplify the target fragment. Among them, the PCR reaction system and reaction conditions are shown in Table 10, and the annealing temperature and fragment extension time are determined by specific verification primers.
12)、质粒去除12), plasmid removal
经过菌落PCR验证,选取正确的转化子,将其中的Cas9质粒和gRNA质粒全部去除。After colony PCR verification, the correct transformants were selected, and all Cas9 plasmids and gRNA plasmids were removed.
具体步骤如下:Specific steps are as follows:
(1)挑取正确的转化子划线于2%YPD固体平板上,30℃培养24h;(1) Pick the correct transformant and streak it on a 2% YPD solid plate, and culture it at 30°C for 24h;
(2)将菌体接种于含5mL2%YPD液体培养基中,30℃,160rpm培养16h;(2) Inoculate the bacteria into 5 mL of 2% YPD liquid medium, and culture at 30°C and 160 rpm for 16 hours;
(3)吸取1mL菌液,8000×g离心2min,弃上清;(3) Take 1mL of bacterial liquid, centrifuge at 8000×g for 2min, and discard the supernatant;
(4)用灭菌水梯度稀释105倍,取100μL菌液涂布于2%YPD固体平板上,于30℃恒温培养箱中培养1d;(4) Gradiently dilute 10 to 5 times with sterilized water, take 100 μL of the bacterial solution and spread it on a 2% YPD solid plate, and incubate in a constant temperature incubator at 30°C for 1 day;
(5)挑取单菌落依次在2%YPD、2%YPD+NAT和2%YPD+G418的平板上点板,于30℃恒温培养箱中培养1-2d。若该菌落只可以在2%YPD上生长,说明该菌落中质粒已脱除。(5) Pick a single colony and spot it on a plate with 2% YPD, 2% YPD+NAT and 2% YPD+G418 in turn, and culture it in a constant temperature incubator at 30°C for 1-2 days. If the colony can only grow on 2% YPD, it means that the plasmid in the colony has been removed.
采用菌株SEB17制备的菌剂。The bacterial agent prepared by strain SEB17.
一种多重耐受性酿酒酵母菌株在制备菌剂中的应用。The application of a multi-tolerant brewer's yeast strain in the preparation of bacterial agents.
一种多重耐受性酿酒酵母菌株在胁迫条件下物料发酵中的应用。Application of a multi-tolerant Saccharomyces cerevisiae strain in material fermentation under stress conditions.
进一步地,胁迫条件包括至少包括高乙醇、高温、高糖和高盐中的一种。Further, the stress condition includes at least one of high ethanol, high temperature, high sugar and high salt.
本方面的高乙醇为:15%YPD+7%-10%初始乙醇;高温为:42-44℃;高糖为:250-300g/L;高盐为:1-1.5mol/L。High ethanol in this aspect is: 15% YPD+7%-10% initial ethanol; high temperature: 42-44°C; high sugar: 250-300g/L; high salt: 1-1.5mol/L.
一种多重耐受性酿酒酵母菌株在有机物料发酵中的应用。Application of a multi-tolerant Saccharomyces cerevisiae strain in the fermentation of organic materials.
本发明与现有技术相比,具有如下的优点和有益效果:Compared with the prior art, the present invention has the following advantages and beneficial effects:
1、本发明的菌株SEB17具有多重耐受性,同时具有耐受高乙醇、高温、高糖、高盐等多种环境胁迫的优点,能够适用于多种环境胁迫下物料发酵,相比菌株SEB14,各方面耐受性均有所提高。1. The strain SEB17 of the present invention has multiple tolerances, and has the advantages of being tolerant to various environmental stresses such as high ethanol, high temperature, high sugar, and high salt, and can be applied to material fermentation under various environmental stresses. Compared with bacterial strain SEB14 , all aspects of tolerance have been improved.
2、本发明首次发现高表达基因ENA5可以显著提高工业酿酒酵母菌株SEB14的耐乙醇、耐高温和耐渗透等多重耐受性,菌株SEB17在多种胁迫条件下的YPD合成培养基中以及在预处理秸秆、废糖蜜和木薯等典型实际物料中进行发酵均具有较高的乙醇产量,展示了较好的工业应用潜力。2. The present invention found for the first time that the highly expressed gene ENA5 can significantly improve the multiple tolerances such as ethanol resistance, high temperature resistance and osmosis resistance of the industrial Saccharomyces cerevisiae strain SEB14. Fermentation in typical real materials such as straw, waste molasses and cassava all have higher ethanol yields, showing good potential for industrial application.
附图说明Description of drawings
此处所说明的附图用来提供对本发明实施例的进一步理解,构成本申请的一部分,并不构成对本发明实施例的限定。在附图中:The drawings described here are used to provide a further understanding of the embodiments of the present invention, constitute a part of the application, and do not limit the embodiments of the present invention. In the attached picture:
图1为菌株SEB17和SEB14乙醇葡萄糖共发酵结果对比图;Fig. 1 is the comparison chart of bacterial strain SEB17 and SEB14 ethanol glucose co-fermentation result;
图2为菌株SEB17和SEB14高温发酵结果对比图;Fig. 2 is a comparison chart of the high-temperature fermentation results of bacterial strains SEB17 and SEB14;
图3为菌株SEB17和SEB14高温乙醇共发酵结果对比图;Fig. 3 is a comparison chart of the high-temperature ethanol co-fermentation results of bacterial strains SEB17 and SEB14;
图4为菌株SEB17和SEB14 VHG发酵结果对比图;Fig. 4 is the comparison chart of bacterial strain SEB17 and SEB14 VHG fermentation result;
图5为菌株SEB17和SEB14高盐发酵结果对比图;Fig. 5 is a comparison chart of high-salt fermentation results of bacterial strains SEB17 and SEB14;
图6为菌株SEB17和SEB14利用预处理秸秆同步糖化发酵结果对比图;Figure 6 is a comparison of the results of simultaneous saccharification and fermentation of strains SEB17 and SEB14 using pretreated straw;
图7为菌株SEB17和SEB14利用废糖蜜进行VHG发酵结果对比图;Figure 7 is a comparison chart of the VHG fermentation results of strains SEB17 and SEB14 utilizing waste molasses;
图8为菌株SEB17和SEB14利用木薯物料同步糖化发酵结果对比图。Fig. 8 is a comparison chart of simultaneous saccharification and fermentation results of strains SEB17 and SEB14 using cassava materials.
具体实施方式Detailed ways
为使本发明的目的、技术方案和优点更加清楚明白,下面结合实施例和附图,对本发明作进一步的详细说明,本发明的示意性实施方式及其说明仅用于解释本发明,并不作为对本发明的限定。In order to make the purpose, technical solutions and advantages of the present invention clearer, the present invention will be further described in detail below in conjunction with the examples and accompanying drawings. As a limitation of the present invention.
实施例1:Example 1:
乙醇葡萄糖共发酵:Ethanol glucose co-fermentation:
以工业酿酒酵母菌株SEB14为宿主,高表达基因ENA5,获得一株优秀的多耐受性菌株SEB17。在9%(v/v)初始乙醇和141.95g/L葡萄糖条件下共发酵96h后,其产生乙醇32.39±1.02g/L,较菌株SEB14提高了13.09%(28.64±1.66g/L)。同时,在发酵24h后,SEB17的发酵速率显著高于SEB14。该结果表明,高表达基因ENA5可以显著提高SEB14的乙醇耐受性,如表11和图1所示。Using the industrial Saccharomyces cerevisiae strain SEB14 as the host and highly expressing the gene ENA5, an excellent multi-tolerant strain SEB17 was obtained. After co-fermentation with 9% (v/v) initial ethanol and 141.95g/L glucose for 96h, it produced 32.39±1.02g/L ethanol, which was 13.09% (28.64±1.66g/L) higher than that of strain SEB14. Meanwhile, after 24 hours of fermentation, the fermentation rate of SEB17 was significantly higher than that of SEB14. The results indicated that the highly expressed gene ENA5 could significantly improve the ethanol tolerance of SEB14, as shown in Table 11 and Figure 1 .
表11 9%(v/v)乙醇和141g/L葡萄糖混合条件下菌株发酵96h结果比较Table 11 Comparison of strain fermentation results for 96h under the mixed conditions of 9% (v/v) ethanol and 141g/L glucose
注:同一列中相同字母表示差异不显著,不同字母表示差异显著,P<0.05(t-test)。9%(v/v)乙醇:初始培养基含64.17g/L。SEB17:菌株SEB14高表达基因ENA5。Note: The same letter in the same column means no significant difference, different letters mean significant difference, P<0.05(t-test). 9% (v/v) ethanol: the initial medium contains 64.17g/L. SEB17: strain SEB14 highly expressed gene ENA5.
实施例2:Example 2:
高温发酵:High temperature fermentation:
本实施例探究菌株SEB17的高温耐受性,在44℃、100.65g/L葡萄糖发酵条件下,菌株SEB17的乙醇浓度显著(P<0.05)高于SEB14(图2)。发酵72h后,SEB17的乙醇浓度和葡萄糖浓度分别为43.52±1.17g/L和7.21±2.03g/L。与SEB14相比增加了14.17%,减少了59.74%(表12)。该结果表明,高表达ENA5可以显著提高菌株SEB14的高温耐受性。In this example, the high temperature tolerance of strain SEB17 was explored. Under the fermentation conditions of 44°C and 100.65g/L glucose, the ethanol concentration of strain SEB17 was significantly (P<0.05) higher than that of SEB14 (Figure 2). After 72 hours of fermentation, the ethanol concentration and glucose concentration of SEB17 were 43.52±1.17g/L and 7.21±2.03g/L, respectively. Compared with SEB14, it increased by 14.17% and decreased by 59.74% (Table 12). This result indicated that high expression of ENA5 could significantly improve the high temperature tolerance of strain SEB14.
表12 44℃条件下菌株发酵72h结果比较Table 12 Comparison of results of strains fermented for 72 hours at 44°C
注:同一列中相同字母表示差异不显著,不同字母表示差异显著,P<0.05(t-test)。SEB17:Note: The same letter in the same column means no significant difference, different letters mean significant difference, P<0.05(t-test). SEB17:
菌株SEB14高表达基因ENA5。The strain SEB14 highly expressed the gene ENA5.
实施例3:Example 3:
高温乙醇共发酵:High temperature ethanol co-fermentation:
在SSF发酵后期,酵母细胞既要耐受高温,同时需要耐受逐渐增加的乙醇浓度。在本实施例中,发现SEB17在初始添加3%乙醇和43℃高温共同发酵条件下也表现出比出发菌株SEB14更好的发酵性能。发酵结束时,其产乙醇浓度(23.43±0.95g/L)相比出发菌株SEB14(18.66±1.62g/L)提高了20.36%,表明菌株SEB17能够很好地耐受高温和乙醇的双重胁迫,高表达基因ENA5对于提高菌株SEB14的高温乙醇双重胁迫耐受性的提升至关重要(图3,表13)。In the late stage of SSF fermentation, yeast cells must tolerate both high temperature and gradually increasing ethanol concentration. In this example, it was found that SEB17 also exhibited better fermentation performance than the starting strain SEB14 under the co-fermentation conditions of initial addition of 3% ethanol and high temperature of 43°C. At the end of the fermentation, its ethanol production concentration (23.43 ± 0.95g/L) increased by 20.36% compared with the starting strain SEB14 (18.66 ± 1.62g/L), indicating that the strain SEB17 can well tolerate the dual stress of high temperature and ethanol, The highly expressed gene ENA5 is crucial for improving the tolerance of strain SEB14 to the double stress of high temperature and ethanol (Fig. 3, Table 13).
表13初始添加3%乙醇、43℃条件下菌株发酵72h结果比较Table 13 Comparison of results of 72h fermentation of strains with initial addition of 3% ethanol and 43°C
注:同一列中相同字母表示差异不显著,不同字母表示差异显著,P<0.05(t-test)。43℃+3%乙醇:初始培养基为21.28g/L乙醇。SEB17:菌株SEB14高表达基因ENA5。Note: The same letter in the same column means no significant difference, different letters mean significant difference, P<0.05(t-test). 43°C + 3% ethanol: the initial medium is 21.28g/L ethanol. SEB17: strain SEB14 highly expressed gene ENA5.
实施例4:Example 4:
VHG发酵:VHG fermentation:
为了进一步探究菌株SEB17的高糖耐受性,本实施例对其进行了高糖条件下的发酵研究。在270.91g/L葡萄糖发酵条件下(初始OD660为1.5)菌株SEB14和菌株SEB17均能够在72h内将葡萄糖消耗完。当葡萄糖浓度提高至280.19g/L时,发酵前24h,菌株SEB17乙醇浓度与出发菌株SEB14无明显差异。发酵48h后有一定差异,发酵至96h,SEB17乙醇浓度较出发菌株SEB14提高3.50%(图4)。其中两株菌株的乙醇收率均达到0.50,说明其代谢乙醇的能力较强(表14)。以上结果表明,高表达基因ENA5可以在一定程度上提高菌株的高糖耐受性。In order to further explore the high-sugar tolerance of the strain SEB17, a fermentation study under high-sugar conditions was carried out in this example. Under 270.91g/L glucose fermentation conditions (initial OD 660 was 1.5), both strain SEB14 and strain SEB17 could consume glucose within 72h. When the glucose concentration increased to 280.19g/L, the ethanol concentration of the strain SEB17 was not significantly different from that of the starting strain SEB14 24 hours before fermentation. After 48 hours of fermentation, there was a certain difference. After 96 hours of fermentation, the ethanol concentration of SEB17 increased by 3.50% compared with the starting strain SEB14 (Figure 4). The ethanol yields of the two strains both reached 0.50, indicating that they have a strong ability to metabolize ethanol (Table 14). The above results indicated that the highly expressed gene ENA5 could improve the high glucose tolerance of the strain to a certain extent.
表14 280.19g/L葡萄糖条件下菌株发酵96h结果比较Table 14 Comparison of strain fermentation results for 96h under 280.19g/L glucose condition
注:同一列中相同字母表示差异不显著,不同字母表示差异显著,P<0.05(t-test)。SEB17:菌株SEB14高表达基因ENA5。Note: The same letter in the same column means no significant difference, different letters mean significant difference, P<0.05(t-test). SEB17: strain SEB14 highly expressed gene ENA5.
实施例5:Example 5:
高盐发酵:High salt fermentation:
本实施例发现除了高糖条件下,在含1.25mol/L(7.31%)NaCl的YPD发酵培养基中,菌株SEB17可以在72h时消耗完所有的葡萄糖,比SEB14提前了24h。当NaCl浓度提高至1.5mol/L(8.77%)时,发酵前24h,SEB17与SEB14乙醇浓度差异不大,发酵48h后,SEB17葡萄消耗速率和乙醇产量均显著高于SEB14(图5)。发酵至96h,SEB17的终点乙醇浓度达56.73±1.05g/L,相比SEB14(28.13±1.58g/L)提高了101.67%(表15)。In this example, it was found that except under high sugar conditions, in the YPD fermentation medium containing 1.25mol/L (7.31%) NaCl, the strain SEB17 could consume all the glucose at 72h, 24h earlier than SEB14. When the NaCl concentration was increased to 1.5mol/L (8.77%), there was no significant difference in ethanol concentration between SEB17 and SEB14 24 hours before fermentation, and after 48 hours of fermentation, the grape consumption rate and ethanol production of SEB17 were significantly higher than those of SEB14 (Figure 5). After 96 hours of fermentation, the end-point ethanol concentration of SEB17 reached 56.73±1.05g/L, which was 101.67% higher than that of SEB14 (28.13±1.58g/L) (Table 15).
表15 1.5M NaCl条件下菌株发酵96h结果比较Table 15 Comparison of strains fermented for 96h under 1.5M NaCl condition
注:同一列中相同字母表示差异不显著,不同字母表示差异显著,P<0.05(t-test)。SEB17:菌株SEB14高表达基因ENA5。Note: The same letter in the same column means no significant difference, different letters mean significant difference, P<0.05(t-test). SEB17: strain SEB14 highly expressed gene ENA5.
实施例6:Embodiment 6:
预处理秸秆发酵:Pretreatment Straw Fermentation:
我国每年可产生数十亿吨农作物废弃秸秆,以秸秆为原料生产燃料乙醇是我国可再生清洁液体燃料发展的重要方向。如图6所示,秸秆预处理物料经过8h糖化后,在42℃高温同步糖化发酵过程中,伴随酶解过程的进行,发酵前24h,发酵液中的葡萄糖快速被酵母利用,发酵48h后,菌株SEB17乙醇浓度高于SEB14,终点乙醇浓度达68.40±1.59g/L。my country can produce billions of tons of waste crop straw every year, and the production of fuel ethanol from straw is an important direction for the development of renewable and clean liquid fuels in my country. As shown in Figure 6, after 8 hours of saccharification of the straw pretreated material, during the high-temperature simultaneous saccharification and fermentation process at 42°C, along with the enzymatic hydrolysis process, the glucose in the fermentation broth was quickly utilized by the yeast 24 hours before fermentation, and after 48 hours of fermentation, The ethanol concentration of strain SEB17 was higher than that of SEB14, and the final ethanol concentration reached 68.40±1.59g/L.
实施例7:Embodiment 7:
废糖蜜原料发酵:Waste molasses raw material fermentation:
废糖蜜是甘蔗压榨制糖过程中产生的主要副产物,其含糖量高,成本低廉,已是巴西、印度等国生产燃料乙醇的主要原料之一。在270.91g/L总糖条件下,发酵前48h,菌株SEB17和SEB14乙醇浓度差异较小,达94-96g/kg。发酵96h后,菌株SEB17乙醇浓度为98.28±2.47g/L,高于菌株SEB14(95.71±3.91g/L)(图7)。Waste molasses is the main by-product produced in the sugar cane crushing process. It has high sugar content and low cost. It has become one of the main raw materials for producing fuel ethanol in Brazil, India and other countries. Under the condition of 270.91g/L total sugar, 48h before fermentation, the ethanol concentration of strains SEB17 and SEB14 had little difference, reaching 94-96g/kg. After 96 hours of fermentation, the ethanol concentration of strain SEB17 was 98.28±2.47g/L, which was higher than that of strain SEB14 (95.71±3.91g/L) ( FIG. 7 ).
实施例8:Embodiment 8:
木薯以其适应性强、产量高且淀粉含量高,被称为“淀粉之王”,是一种极具潜力的淀粉类生物质能源作物。从图8中可以看出,在固含量35%条件下,发酵前24h,菌株SEB17和SEB14产乙醇速率较快,发酵至48h,菌株产乙醇浓度趋于稳定,发酵96h,菌株SEB17终点乙醇产量(138.43±2.06g/L)高于出发菌株SEB14(134.70±1.87g/L)。Cassava is known as the "king of starch" because of its strong adaptability, high yield and high starch content, and it is a starchy biomass energy crop with great potential. It can be seen from Figure 8 that under the condition of 35% solid content, the ethanol production rate of the strains SEB17 and SEB14 was relatively fast 24 hours before fermentation, and the ethanol production concentration of the strains tended to be stable after 48 hours of fermentation. (138.43±2.06g/L) was higher than the starting strain SEB14 (134.70±1.87g/L).
综上所述,本发明首次发现高表达基因ENA5可以显著提高工业酿酒酵母菌株SEB14的耐乙醇、耐高温和耐渗透等多重耐受性,菌株SEB17在多种胁迫条件下的YPD合成培养基中以及在预处理秸秆、废糖蜜和木薯等典型实际物料中进行发酵均具有较高的乙醇产量,展示了较好的工业应用潜力。In summary, the present invention found for the first time that the highly expressed gene ENA5 can significantly improve the multiple tolerances of industrial Saccharomyces cerevisiae strain SEB14, such as ethanol resistance, high temperature resistance and osmosis resistance. And fermentation in typical real materials such as pretreated straw, waste molasses and cassava all have higher ethanol yields, showing good potential for industrial application.
以上所述的具体实施方式,对本发明的目的、技术方案和有益效果进行了进一步详细说明,所应理解的是,以上所述仅为本发明的具体实施方式而已,并不用于限定本发明的保护范围,凡在本发明的精神和原则之内,所做的任何修改、等同替换、改进等,均应包含在本发明的保护范围之内。The specific embodiments described above have further described the purpose, technical solutions and beneficial effects of the present invention in detail. It should be understood that the above descriptions are only specific embodiments of the present invention and are not intended to limit the scope of the present invention. Protection scope, within the spirit and principles of the present invention, any modification, equivalent replacement, improvement, etc., shall be included in the protection scope of the present invention.
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