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CN113416747A - Method for creating temperature-sensitive male sterile plant - Google Patents

Method for creating temperature-sensitive male sterile plant Download PDF

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CN113416747A
CN113416747A CN202010140812.1A CN202010140812A CN113416747A CN 113416747 A CN113416747 A CN 113416747A CN 202010140812 A CN202010140812 A CN 202010140812A CN 113416747 A CN113416747 A CN 113416747A
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CN113416747B (en
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谢洪涛
代晓娟
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Shandong Shunfeng Biotechnology Co Ltd
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Abstract

The invention discloses a method for creating a temperature-sensitive male sterile plant, comprising the step of reducing the expression or activity of a Rboh gene or its encoded protein in the plant, and a method for transforming a plant from sterile to fertile. In addition, the invention provides the application of the inhibitor of the Rboh gene or the coded protein thereof in cultivating a plant sterile line or preparing a reagent or a kit for cultivating the plant sterile line.

Description

Method for creating temperature-sensitive male sterile plant
Technical Field
The invention relates to the field of agriculture and biotechnology, in particular to a method for creating a temperature-sensitive male sterile plant.
Background
Reactive Oxygen Species (ROS) are a type of by-product of aerobic metabolism of organisms, mainly consisting of superoxide anion radicals (O)2 -H), hydroxyl radical (. OH) and hydrogen peroxide (H)2O2) ROS have dual functions: on one hand, the compound can be used as a toxic secondary metabolite to destroy normal molecules in vivo; on the other hand, it is an important signal molecule involved in the growth and development of organisms. Sources of ROS have been found to include plasma membrane NADPH oxidases, peroxidases, and amine oxidases, with ROS produced mediated by NADPH oxidases being of greatest concern.
Male sterility refers to the phenomenon in which the female organs of a plant function normally while the male organs (degenerated, without pollen or pollen without activity) lose the pollination function. The male organ of the sterile line is dysplastic and can not bear fruit by self-fertilization; the female organ is normally developed, has fertilization capability and can accept fertilization and fructification of foreign pollen. Male sterility can be divided into: nuclear male sterility, cytoplasmic male sterility, nuclear-cytoplasmic male sterility. The male sterile line is used as female parent, and the restoring line is used as male parent, so that high-quality hybrid can be obtained.
The male sterile line is widely used in rice breeding, and at present, the hybrid rice breeding mainly comprises a three-line method and a two-line method. The three-line cross breeding method comprises a maintainer line, a restorer line and a sterile line, for example, the three-line cross breeding process of rice comprises the following steps: the male sterile line is first used as mother body and the maintainer line as male parent to hybridize and maintain the male sterile line. Then the sterile line is used as female parent and the restoring line is used as male parent to obtain hybrid. The method is a method commonly adopted by China for popularizing the thirty-year history of hybrid rice and is still used in large quantity at present. The breeding process and production links of the three-line method are complex, so that the breeding of new combinations is long in period, low in efficiency, multiple in popularization links, low in speed, high in seed cost and high in price. The two-line hybrid rice comprises a sterile line and a restorer line, the sterile line can restore fertility under the influence of temperature and illumination, and the two-line hybrid rice is another important technological innovation in rice genetic breeding after the three-line hybrid rice. Compared with the three-line hybrid rice, the two-line hybrid rice has remarkable advantages: firstly, the sterile line and the restorer line are freely matched and combined, and the probability of breeding excellent combinations is increased; and secondly, the sterile line has two purposes, so that a maintainer line is eliminated, and a link is reduced in the seed production procedure, thereby reducing the seed production cost. Secondly, the composition is free, and almost any variety can be used as a restorer. Thirdly, because the gene heredity of the photo-thermo-sensitive sterile nucleus is irrelevant to cytoplasm, the negative effect of cytoplasm in the sterile line of the three-line method can be overcome. And fourthly, the method can follow up the breeding of conventional rice without breeding, open up a new field of heterosis of indica-japonica subspecies, and realize a higher yield target of rice yield on the basis of the existing hybrid rice. The advantage of the two-line method makes the development of the light-emitting temperature-sensitive male sterile line one of the targets of realizing the heterosis.
The control gene of the male sterile line capable of restoring fertility is screened, the preparation of the sterile line can be rapidly and efficiently realized, and the method is popularized and used among different species. However, at present, the known genes for controlling the male sterile line of plants are not many, so that the development of related functional genes has important significance for rapidly breeding and preparing the male sterile line and promoting the utilization of the advantages of cross breeding.
Disclosure of Invention
The invention aims to provide a gene for controlling a plant male sterile line, thereby rapidly breeding and preparing the male sterile line and promoting the utilization of the advantages of cross breeding.
In a first aspect of the invention, there is provided a method of breeding a plant sterile line comprising the steps of: reducing the expression or activity of a Rboh gene or its encoded protein in said plant.
In another preferred embodiment, the method is carried out at least during the development of the anthers, preferably during the flowering phase of the plants, at a maximum temperature of the growing environment of at least 25 ℃, preferably at least 28 ℃, preferably at least 29 ℃, preferably at least 30 ℃, preferably at least 31 ℃, preferably at least 32 ℃, preferably at least 33 ℃, preferably at least 34 ℃, preferably at least 35 ℃.
In another preferred embodiment, the method is carried out at a maximum temperature in the range of 25-35 deg.C, preferably 26-32 deg.C, more preferably 28-30 deg.C, at least during anther development, preferably during plant flowering.
In another preferred embodiment, the method is carried out in the plant anther development period, preferably the flowering period, under the condition that the temperature fluctuation range of the growth environment is controlled to be 12-35 ℃, preferably 16-30 ℃, more preferably 18-30 ℃, and more preferably 20-30 ℃.
In another preferred embodiment, the Rboh gene is a gene specifically expressed during the development of plant anthers.
In another preferred embodiment, the Rboh gene is from one or more plants selected from the group consisting of: cruciferae, Gramineae, Leguminosae, Solanaceae, Umbelliferae, Chenopodiaceae, Actinidiaceae, Moraceae, Malvaceae, Paeoniaceae, Rosaceae, Liliaceae, or their combination.
In another preferred embodiment, said Rboh gene is from one or more plants selected from the group consisting of: arabidopsis, potato, sweet potato, purple sweet potato, yam, taro, cassava, jerusalem artichoke, rice, wheat, barley, corn, sorghum, soybean, peanut, millet, quinoa, tomato, tobacco, rape, hot pepper, cotton, cabbage, spinach, lettuce, cucumber, garland chrysanthemum, swamp cabbage, celery, onion, leaf lettuce, millet, peanut, kiwi, cotton, strawberry, peony, perfume lily, tulip, mulberry, apple, pear, peach, cherry, pomegranate.
In another preferred embodiment, the Rboh gene comprises: OsRBOHA, OsRBOHB, OsRBOHE, or a combination thereof of rice; tomato LeRBOHE, LeRBOHB, LeRBOH, or combinations thereof; AtRBOHE of Arabidopsis thaliana; preferably, the RboH gene comprises OsRBOHA, OsRBOHB, OsRBOHE of rice, or a combination thereof; tomato LeRBOHE, LeRBOHB, LeRBOH, or combinations thereof.
In another preferred embodiment, the Rboh gene comprises a wild type Rboh gene and a mutant Rboh gene.
In another preferred embodiment, the mutant form comprises a mutant form in which the function of the encoded protein is unchanged (i.e., functions the same or substantially the same as the wild-type encoded protein), enhanced and/or reduced after mutation.
In another preferred embodiment, the mutant Rboh gene encodes a polypeptide which is identical or substantially identical to the polypeptide encoded by the wild-type Rboh gene.
In another preferred embodiment, the mutant Rboh gene comprises a polynucleotide having a homology of 80% or more (preferably 90% or more, more preferably 95% or more, still more preferably 98% or 99%) with respect to the wild-type Rboh gene.
In another preferred embodiment, the mutant Rboh gene comprises a polynucleotide which is truncated or supplemented by 1 to 60 (preferably 1 to 30, more preferably 1 to 10) nucleotides at the 5 'and/or 3' end of the wild type Rboh gene.
In another preferred embodiment, the nucleotide sequence of the Rboh gene is selected from the group consisting of:
(a) a polynucleotide encoding a polypeptide as set forth in any one of SEQ ID No. 1-7;
(b) a polynucleotide having a sequence as set forth in any one of SEQ ID No. 8-14;
(c) a polynucleotide having a nucleotide sequence homology of not less than 50% (preferably not less than 60%, more preferably not less than 75%, more preferably not less than 85%, more preferably not less than 90% or not less than 95% or not less than 98%, e.g., 99%) with a sequence represented by any one of SEQ ID nos. 8-14;
(d) 8-14, or a polynucleotide in which 1-60 (preferably 1-30, more preferably 1-10) nucleotides are truncated or added at the 5 'end and/or 3' end of the polynucleotide shown in SEQ ID NO;
(e) a polynucleotide complementary to any one of the polynucleotides of (a) - (d).
In another preferred embodiment, the amino acid sequence of said Rboh protein is selected from the group consisting of:
(i) a polypeptide having an amino acid sequence as set forth in any one of SEQ ID No. 1-7;
(ii) 1-7 through one or several (such as 1-10) amino acid residue substitution, deletion or addition, with the said plant character function of regulation and control derived polypeptide of (i); or
(iii) The homology of the amino acid sequence with any one of the amino acid sequences shown in SEQ ID NO. 1-7 is more than or equal to 60 percent (preferably more than or equal to 80 percent, more preferably more than or equal to 90 percent, more preferably more than or equal to 95 percent or more than or equal to 98 percent, such as 99 percent), and the polypeptide with the Rboh activity.
In another preferred embodiment, said "reducing" means that the expression or activity of the Rboh gene or its encoded protein in said plant is reduced under the following conditions:
the ratio of A1/A0 is less than or equal to 80 percent, preferably less than or equal to 60 percent, more preferably less than or equal to 40 percent, and most preferably 0 to 30 percent;
wherein A1 is the expression or activity of the Rboh gene or its encoded protein in the plant; a0 is the expression or activity of the same Rboh gene or its coded protein in wild plant of the same type.
In another preferred embodiment, the method for reducing the number of Rboh genes or proteins encoded thereby in a plant comprises: the expression level of the Rboh gene is reduced, and/or the activity of the protein coded by the Rboh gene is reduced.
In another preferred embodiment, said reduction means that the expression level of the Rboh gene or protein encoded thereby E1 in said plant is from 0 to 80%, preferably from 0 to 60%, preferably from 0 to 40%, preferably from 0 to 30%, preferably from 0 to 20%, preferably from 0 to 10%, more preferably from 0 to 5% of wild type, compared to the expression level of the wild type Rboh gene or protein encoded thereby E0; and/or the activity A1 of the Rboh gene or protein encoded thereby in said plant is 0-80%, preferably 0-60%, preferably 0-40%, preferably 0-30%, preferably 0-20%, preferably 0-10%, more preferably 0-5% of the wild type, compared to the activity A0 of the wild type Rboh gene or protein encoded thereby.
In another preferred embodiment, said reducing the expression or activity of the Rboh gene or its encoded protein in the plant is effected by a means selected from the group consisting of: gene mutation, gene knockout, gene disruption, gene editing techniques, natural mutagenesis, artificial mutagenesis (including physical, chemical, biological methods, etc.), inhibitors (such as small molecule compounds, nucleic acid molecules (RNAi), or combinations thereof), regulatory gene expression control elements, or combinations thereof.
In another preferred embodiment, the expression control elements include cis-acting elements and trans-acting factors.
In another preferred example, the gene editing technology comprises TALEN, ZIN, CRISPR.
In another preferred embodiment, the plant is an amphoteric flower or a hermaphrodite plant.
In another preferred embodiment, the plant includes dicotyledonous plants and monocotyledonous plants.
In another preferred embodiment, the plant includes a crop, a forestry plant, a vegetable, a melon, a flower, a pasture grass (including a lawn grass).
In another preferred embodiment, the plant is selected from the group consisting of: cruciferae, Gramineae, Leguminosae, Solanaceae, Umbelliferae, Chenopodiaceae, Actinidiaceae, Moraceae, Malvaceae, Paeoniaceae, Rosaceae, Liliaceae, or their combination.
In another preferred embodiment, the plant is selected from the group consisting of: arabidopsis, potato, sweet potato, purple sweet potato, yam, taro, cassava, jerusalem artichoke, rice, wheat, barley, corn, sorghum, soybean, peanut, millet, quinoa, tomato, tobacco, rape, capsicum, cotton, cabbage, spinach, lettuce, cucumber, garland chrysanthemum, swamp cabbage, celery, onion, leaf lettuce, millet, peanut, kiwi, cotton, strawberry, peony, lilium brownie, tulip, mulberry, apple, pear, peach, cherry, pomegranate, or a combination thereof.
In another preferred embodiment, the plant is selected from the group consisting of: rice, wheat, corn, tomato, canola, pepper, cotton, soybean, or combinations thereof.
In another preferred embodiment, the rice is selected from the group consisting of: indica rice, japonica rice, or a combination thereof.
In another preferred embodiment, said plant sterile line has one or more characteristics selected from the group consisting of:
(1) the female organs in the hermaphrodite plants atrophy, malformation, or disappearance.
(2) Failure to form normal microsporogenic tissue;
(3) microspores are abnormal, forming imperfect, non-viable, malformed or aborted flowers;
(4) pollen is not mature or does not have germination capacity;
(5) viable pollen was formed but the anthers did not crack.
In another preferred example, the plant sterile line is a high temperature sensitive plant sterile line.
In another preferred example, the plant sterile line is a high temperature sensitive male sterile line.
In another preferred embodiment, said plant sterile line comprises nuclear male sterility.
In another preferred embodiment, the elevated temperature is ≥ 25 ℃, preferably ≥ 28 ℃, preferably ≥ 29 ℃, preferably ≥ 30 ℃, preferably ≥ 31 ℃, preferably ≥ 32 ℃, preferably ≥ 33 ℃, preferably ≥ 34 ℃, preferably ≥ 35 ℃.
In another preferred embodiment, the elevated temperature is from 25 to 35 deg.C, more preferably, from 26 to 32 deg.C, more preferably, from 28 to 30 deg.C.
In a second aspect, the invention provides an application of an inhibitor of a Rboh gene or a protein coded by the Rboh gene in cultivating a plant sterile line or preparing a reagent or a kit for cultivating a plant sterile line.
In another preferred embodiment, the inhibitor is selected from the group consisting of: a small molecule compound, an antisense nucleic acid, a microRNA, a siRNA, an RNAi, a Crispr agent, or a combination thereof.
In a third aspect, the present invention provides a method for restoring fertility to a sterile line of a plant, comprising the steps of: cultivating the plant sterile line of the first aspect of the invention under low temperature conditions.
In another preferred embodiment, the low temperature conditions are a maximum temperature of the growth environment of less than 25 ℃, preferably less than or equal to 24 ℃, preferably less than or equal to 23 ℃, preferably less than or equal to 22 ℃, preferably less than or equal to 21 ℃, preferably less than or equal to 20 ℃.
In another preferred embodiment, the low temperature condition is a temperature fluctuation range of the growth environment of 12-24 ℃, preferably 16-22 ℃, preferably 18-22 ℃.
In another preferred example, the ambient temperature includes the ambient temperature during the period when the plant is growing moss, preferably during the development of anthers, preferably during the flowering period.
In another preferred embodiment, said restoration of fertility comprises pollinating a plant produced from a seed having reproductive capacity.
In a fourth aspect, the present invention provides a method for transforming a plant from sterile to fertile, comprising the steps of: cultivating the plant sterile line cultivated by the method according to the first aspect of the invention under low temperature conditions.
In another preferred embodiment, the low temperature conditions are a maximum temperature of the growth environment of less than 25 ℃, preferably less than or equal to 24 ℃, preferably less than or equal to 23 ℃, preferably less than or equal to 22 ℃, preferably less than or equal to 21 ℃, preferably less than or equal to 20 ℃.
In another preferred embodiment, the low temperature condition is a temperature fluctuation range of the growth environment of 12-24 ℃, preferably 16-22 ℃, preferably 18-22 ℃.
In another preferred example, the ambient temperature includes the ambient temperature during the period when the plant is growing moss, preferably the ambient temperature during the development of anthers, more preferably the ambient temperature during the flowering period.
In another preferred embodiment, said restoration of fertility comprises pollinating a plant produced from a seed having reproductive capacity.
In a fifth aspect, the present invention provides a method of plant breeding comprising the steps of: crossing the plant sterile line according to the first aspect of the invention with another parent plant to obtain a hybrid.
According to a sixth aspect of the present invention, there is provided a method of breeding a plant, comprising the steps of maintaining the plant sterile; transforming the plant from sterile to fertile; and/or maintaining the plants fertile and breeding;
in the step of maintaining the plant sterile, comprising maintaining a plant sterile line grown according to the method of the first aspect of the invention;
in the step of converting the plant from sterile to fertile, the method according to the third or fourth aspect of the invention may be used to convert the plant from sterile to fertile.
In a seventh aspect, the present invention provides a plant cell, wherein the expression or activity of the Rboh gene or its encoded protein is reduced in the plant cell and/or in a plant which develops from the plant cell.
The eighth aspect of the present invention provides a method for identifying a plant sterile line or propagation material thereof, comprising the steps of: and detecting the expression or activity of the Rboh gene or the coded protein thereof in the plant sample.
In another preferred example, when the expression or activity of the Rboh gene or its encoded protein in the plant sample meets the following conditions, then the plant is a plant sterile line or propagation material thereof:
the ratio of A1/A0 is less than or equal to 80 percent, preferably less than or equal to 60 percent, more preferably less than or equal to 40 percent, and most preferably 0 to 30 percent;
wherein A1 is the expression or activity of the Rboh gene or its encoded protein in the plant sample; a0 is the expression or activity of the same Rboh gene or its coded protein in wild-type plant sample of the same type.
In another preferred embodiment, when the expression level of the Rboh gene or its encoded protein E1 in the plant sample is 0-80%, preferably 0-60%, preferably 0-40%, preferably 0-30%, preferably 0-20%, preferably 0-10%, more preferably 0-5% of the wild type; and/or when the activity a1 of the Rboh gene or protein encoded by it in the plant sample is 0-80%, preferably 0-60%, preferably 0-40%, preferably 0-30%, preferably 0-20%, preferably 0-10%, more preferably 0-5% of the wild type, compared to the activity a0 of the wild type Rboh gene or protein encoded by it, the plant is a sterile plant line or propagation material thereof.
It is to be understood that within the scope of the present invention, the above-described features of the present invention and those specifically described below (e.g., in the examples) may be combined with each other to form new or preferred embodiments. Not to be reiterated herein, but to the extent of space.
Drawings
FIG. 1 shows the seed growth of Arabidopsis rbohe mutants at varying temperatures between 18 ℃ and 30 ℃ and between 20 ℃ and 22 ℃.
FIG. 2 shows the pollen production of Arabidopsis rbohe mutants at varying temperatures between 18 ℃ and 30 ℃ and between 20 ℃ and 22 ℃.
FIG. 3 shows the development of pollen of Arabidopsis thaliana rbohe mutants at varying temperatures between 18 ℃ and 30 ℃ and between 20 ℃ and 22 ℃.
Detailed Description
The inventor of the present invention has made extensive and intensive studies and, for the first time, has unexpectedly found that, in some specific plant sterile lines, by regulating the expression or activity of the Rboh gene or its encoded protein, the fertility of the plant can be regulated, and a controllable switch between sterility and fertility can be achieved. The inventor also develops various technologies such as corresponding cultivation of plant sterile lines and the like which have wide application values in the aspects of agricultural breeding and the like. The present invention has been completed based on this finding.
Rboh gene
Rboh, a plant NADPH oxidase also known as respiratory burst oxidase (Rboh), is a mammalian macrophage NADPH oxidase catalytic subunit gp91phoxA homologue of (a). Plant NADPH oxidases contain an NADPH binding domain, a FAD binding domain, and 6 conserved transmembrane domains, which interact with mammalian gp91phoxThe conserved domains of (a). Unlike mammals, all plant Rboh proteins contain a 300 amino acid N-terminal extension containing 2 conserved Ca2+ binding EF chiral structures. The NADPH oxidase can be positioned in a specific region of different cells in a manner that enables the NADPH oxidase to generate ROS in the specific region of the cells and exert special biological functions.
OsRbohA in rice is the first cloned Rboh gene in plants, and then the Rboh gene is cloned from various crops such as arabidopsis, potato, tomato, tobacco and the like. Studies have shown that Rboh genes in plants generally exist in the form of gene families, 10 Rboh genes (AtRbohA-J) are included in the Arabidopsis genome, and 7 Rboh genes (AtRbohA-G) are included in rice. The Rboh gene refers to a Rboh subtype gene related to plant pollen development, and can be one or more Rboh subtype genes or a combination of a plurality of subtype genes.
The plant source of the Rboh gene or its encoded protein suitable for the present invention is not particularly limited, and may be from any plant species, and it is known to those skilled in the art that Rboh families in different crops contain different numbers of subtype genes, and the Rboh gene of the present invention is preferably a Rboh subtype gene related to the development of male organs (such as anthers and pollen) of plants or specifically expressed during the development of male organs or in tissues related to male organs. Representative plant and functional genes include, but are not limited to:
OsRBOHA, OsRBOHB, OsRBOHE, or a combination thereof of rice; tomato LeRBOHE, LeRBOHB, LeRBOH, or combinations thereof; AtRBOHE of Arabidopsis thaliana; preferably, the RboH gene comprises OsRBOHA, OsRBOHB, OsRBOHE of rice, or a combination thereof; tomato LeRBOHE, LeRBOHB, LeRBOH, or combinations thereof.
In a preferred embodiment, the protein sequence of OsRBOHA is shown as SEQ ID No.:1, the protein sequence of OsRBOHB is shown as SEQ ID No.:2, the protein sequence of OsRBOHE is shown as SEQ ID No.:3, the protein sequence of AtRBOHE is shown as SEQ ID No.:4, the protein sequence of LeRBOHB is shown as SEQ ID No.:5, the protein sequence of LeRBOHE is shown as SEQ ID No.:6, and the protein sequence of LeRBOH is shown as SEQ ID No.: 7;
the nucleotide sequence of OSRBOHA is shown as SEQ ID NO. 8, the nucleotide sequence of OSRBOHB is shown as SEQ ID NO. 9, the nucleotide sequence of OSRBOHE is shown as SEQ ID NO.10, the nucleotide sequence of LeRBOHB is shown as SEQ ID NO. 11, the nucleotide sequence of LeRBOHE is shown as SEQ ID NO. 12, the nucleotide sequence of LeRBOH is shown as SEQ ID NO. 13, and the nucleotide sequence of AtRBOHE is shown as SEQ ID NO. 14.
As used herein, the terms "Rboh gene of the present invention", "gene of NADPH oxidase", "gene of respiratory burst oxidase" are used interchangeably and refer to a Rboh gene derived from a plant (e.g., arabidopsis thaliana, rice, tomato) or a variant thereof. In a preferred embodiment, the nucleotide sequence of the Rboh gene of the invention is shown in SEQ ID No. 8-14. Variants of the gene may be obtained by insertion, substitution or deletion of nucleotides, random or site-directed mutagenesis, or the like.
The invention also includes nucleic acids having 50% or more (preferably 60% or more, 70% or more, 80% or more, more preferably 90% or more, more preferably 95% or more, most preferably 98% or more, e.g., 99%) homology to the preferred gene sequences of the invention (SEQ ID NO.:8-14), which are also effective in modulating traits in plants (e.g., Arabidopsis, rice, tomato) (e.g., by reducing the expression or activity of the gene or its encoded protein to develop a plant sterile line). "homology" refers to the level of similarity (i.e., sequence similarity or identity) between two or more nucleic acids in terms of percentage positional identity.
In the present invention, the nucleotide sequence in SEQ ID NO. 8-14 can be substituted, deleted or added with one or more (usually 1-90, preferably 1-60, more preferably 1-20, most preferably 1-10) nucleotides, and several (usually less than 60, preferably less than 30, more preferably less than 10, most preferably less than 5) nucleotides at the 5 'and/or 3' end to generate the derivative sequence of SEQ ID NO. 8-14, which can basically encode the amino acid sequence shown in SEQ ID NO. 1-7 even if the homology with SEQ ID NO. 8-14 is low due to the degeneracy of the codons.
In addition, the meaning of "nucleotide sequence in SEQ ID NO. 8-14 is substituted, deleted or added with at least one nucleotide derivative sequence" also includes nucleotide sequences that can hybridize to the nucleotide sequences shown in SEQ ID NO. 8-14 under moderate stringency conditions, more preferably under high stringency conditions. These variants include (but are not limited to): deletion, insertion and/or substitution of several (usually 1 to 90, preferably 1 to 60, more preferably 1 to 20, most preferably 1 to 10) nucleotides, and addition of several (usually less than 60, preferably less than 30, more preferably less than 10, most preferably less than 5) nucleotides at the 5 'and/or 3' end.
It is to be understood that although the genes provided in the examples of the present invention are derived from Arabidopsis, rice, tomato, the gene sequences of Rboh derived from other similar plants (especially plants belonging to the same family or genus as Arabidopsis, rice or tomato or plants of other families or genera having a higher homology to Arabidopsis, rice or tomato) having a certain homology (conserved, e.g., having a sequence identity of 50% or more, e.g., 60%, 70%, 80%, 85%, 90%, 95% or even 98%) to the sequences of the present invention (preferably, the sequences are as shown in SEQ ID Nos. 8-14) are also included in the scope of the present invention, as long as the sequences can be easily isolated from other plants by a person skilled in the art after reading the present application based on the information provided herein, methods and means for aligning the sequence identities are also well known in the art, such as BLAST.
The polynucleotide of the present invention may be in the form of DNA or RNA. The DNA forms include: DNA, genomic DNA or artificially synthesized DNA, the DNA may be single-stranded or double-stranded. The DNA may be the coding strand or the non-coding strand. The sequence of the coding region encoding the mature polypeptide may be identical to the sequence of the coding region as shown in SEQ ID Nos. 8-14 or may be a degenerate variant.
Polynucleotides encoding mature polypeptides include coding sequences encoding only mature polypeptides; the coding sequence for the mature polypeptide and various additional coding sequences; the coding sequence (and optionally additional coding sequences) as well as non-coding sequences for the mature polypeptide.
The term "polynucleotide encoding a polypeptide" may include a polynucleotide encoding the polypeptide, and may also include additional coding and/or non-coding sequences. The invention also relates to variants of the above polynucleotides which encode fragments, analogs and derivatives of the polyglycosides or polypeptides having the same amino acid sequence as the invention. The variant of the polynucleotide may be a naturally occurring allelic variant or a non-naturally occurring variant. These nucleotide variants include substitution variants, deletion variants and insertion variants. As is known in the art, an allelic variant is a substitution of a polynucleotide, which may be a substitution, deletion, or insertion of one or more nucleotides, without substantially altering the function of the polypeptide encoded thereby.
The present invention also relates to polynucleotides which hybridize to the sequences described above and which have at least 50%, preferably at least 70%, and more preferably at least 80% identity between the two sequences. The present invention particularly relates to polynucleotides which hybridize under stringent conditions to the polynucleotides of the present invention. In the present invention, "stringent conditions" mean: (1) hybridization and elution at lower ionic strength and higher temperature, such as 0.2 XSSC, 0.1% SDS, 60 ℃; or (2) adding denaturant during hybridization, such as 50% (v/v) methyl phthalein amine, 0.1% calf serum/0.1% Ficoll, 42 deg.C, etc.; or (3) hybridization occurs only when the identity between two sequences is at least 90% or more, preferably 95% or more.
The full-length sequence of the Rboh nucleotide or a fragment thereof of the present invention can be obtained by PCR amplification, recombination, or artificial synthesis. For PCR amplification, primers can be designed based on the nucleotide sequences disclosed herein, particularly open reading frame sequences, and the sequences can be amplified using a commercially available DNA library or a cDNA library prepared by conventional methods known to those skilled in the art as a template. When the sequence is long, two or more PCR amplifications are often required, and then the amplified fragments are spliced together in the correct order. Once the sequence of interest has been obtained, it can be obtained in large quantities by recombinant methods. Usually, it is cloned into a vector, transferred into a cell, and then isolated from the propagated host cell by a conventional method to obtain the relevant sequence.
In addition, the sequence can be synthesized by artificial synthesis, especially when the fragment length is short. Generally, fragments with long sequences are obtained by first synthesizing a plurality of small fragments and then ligating them. At present, DNA sequences encoding the proteins of the present invention (or fragments or derivatives thereof) have been obtained completely by chemical synthesis. The DNA sequence may then be introduced into various existing DNA molecules (or vectors, for example) and cells known in the art. Furthermore, mutations can also be introduced into the protein sequences of the invention by chemical synthesis.
Polypeptide coded by Rboh gene
As used herein, the terms "polypeptide of the invention", "protein encoding a Rboh gene", which are used interchangeably, all refer to a polypeptide of Rboh derived from a plant and variants thereof. In a preferred embodiment, a typical amino acid sequence of a polypeptide of the invention is shown in SEQ ID No. 1-7.
The invention relates to an Rboh polypeptide for regulating plant traits and a variant thereof, and in a preferred embodiment of the invention, the amino acid sequence of the polypeptide is shown in SEQ ID NO. 1-7. The polypeptide can effectively regulate and control the characters of plants (such as arabidopsis thaliana, rice or tomato) (for example, by reducing the activity of Rboh protein, so as to cultivate plant sterile lines).
The present invention also includes polypeptides or proteins having 50% or more (preferably 60% or more, 70% or more, 80% or more, more preferably 90% or more, more preferably 95% or more, most preferably 98% or more, e.g., 99%) homology to the sequences shown in SEQ ID Nos. 1 to 7 of the present invention and having the same or similar functions.
The "same or similar functions" mainly refer to: "modulating a trait (such as by reducing the activity of a Rboh protein, thereby breeding a plant sterile line)" in a plant or crop (such as Arabidopsis, rice or tomato).
The polypeptide of the present invention may be a recombinant polypeptide, a natural polypeptide, or a synthetic polypeptide. The polypeptides of the invention can be naturally purified products, or chemically synthesized products, or using recombinant technology from prokaryotic or eukaryotic hosts (e.g., bacteria, yeast, higher plant, insect and mammalian cells). Depending on the host used in the recombinant production protocol, the polypeptides of the invention may be glycosylated or may be non-glycosylated. The polypeptides of the invention may or may not also include an initial methionine residue.
The invention also includes Rboh protein fragments and analogues having Rboh protein activity. As used herein, the terms "fragment" and "analog" refer to a polypeptide that retains substantially the same biological function or activity as the native Rboh protein of the invention.
The polypeptide fragment, derivative or analogue of the invention may be: (i) polypeptides in which one or more conserved or non-conserved amino acid residues (preferably conserved amino acid residues) are substituted, and such substituted amino acid residues may or may not be encoded by the genetic code; or (ii) a polypeptide having a substituent group in one or more amino acid residues; or (iii) a polypeptide formed by fusing the mature polypeptide to another compound, such as a compound that increases the half-life of the polypeptide, e.g., polyethylene glycol; or (iv) a polypeptide formed by fusing an additional amino acid sequence to the polypeptide sequence (e.g., a leader or secretory sequence or a sequence used to purify the polypeptide or a proprotein sequence, or a fusion protein). Such fragments, derivatives and analogs are within the purview of those skilled in the art in view of the definitions herein.
In the present invention, the polypeptide variant is an amino acid sequence shown in SEQ ID NO. 1-7, a derivative sequence obtained by several (usually 1-60, preferably 1-30, more preferably 1-20, and most preferably 1-10) substitutions, deletions or additions of at least one amino acid, and one or several (usually less than 20, preferably less than 10, and more preferably less than 5) amino acids added at the C-terminal and/or N-terminal. For example, in the protein, when the performance similar or similar amino acid substitution, usually does not change the protein function, C terminal and/or \ terminal addition of one or several amino acids usually does not change the protein function. These conservative changes are best made by making substitutions according to table 1.
TABLE 1
Figure BDA0002399018850000121
Figure BDA0002399018850000131
The invention also includes analogs of the claimed proteins. The analogs may differ from the native SEQ ID NO. 1-7 by amino acid sequence differences, by modifications that do not affect the sequence, or by both. Analogs of these proteins include natural or induced genetic variants. Induced variants can be obtained by various techniques, such as random mutagenesis by irradiation or exposure to mutagens, site-directed mutagenesis, or other well-known biological techniques. Analogs also include analogs having residues other than the natural L-amino acids (e.g., D-amino acids), as well as analogs having non-naturally occurring or synthetic amino acids (e.g., beta, gamma-amino acids). It is to be understood that the proteins of the present invention are not limited to the representative proteins exemplified above.
Modified (generally without altering primary structure) forms include: chemically derivatized forms of the protein such as acetoxylation or carboxylation, in vivo or in vitro. Modifications also include glycosylation, such as those performed during protein synthesis and processing. Such modification may be accomplished by exposing the protein to an enzyme that performs glycosylation, such as mammalian glycosylating or deglycosylating enzymes. Modified forms also include sequences having phosphorylated amino acid residues (e.g., phosphotyrosine, phosphoserine, phosphothreonine).
Plant sterile line and cultivation method thereof
The invention also provides a method for cultivating the plant sterile line, which comprises the following steps: reducing the expression or activity of a Rboh gene or its encoded protein in said plant.
In the method of the present invention, the method further comprises controlling the ambient temperature during the growth of the plant. In the method, at least in the development period of the anther, preferably the flowering period of the plant, the highest temperature of the growth environment is more than or equal to 25 ℃, preferably more than or equal to 28 ℃, preferably more than or equal to 29 ℃, preferably more than or equal to 30 ℃, preferably more than or equal to 31 ℃, preferably more than or equal to 32 ℃, preferably more than 33 ℃, preferably more than or equal to 34 ℃, preferably more than or equal to 35 ℃. Or, in the development period of plant anther, preferably the flowering period, the temperature fluctuation range of the growth environment is controlled to be 12-35 ℃, preferably 16-30 ℃, more preferably 18-30 ℃, more preferably 20-30 ℃.
The plant sterile line refers to a plant line in which female organs develop normally and male organs (such as anthers and pollen) cannot normally play a function. Preferably, the plant sterile line of the invention is high-temperature sensitive male sterility, i.e. the development of the male gamete of the plant is affected by the environmental temperature. When the pollen grows under the high-temperature condition, the activity of male gametes is reduced or lost, and normal pollination cannot be realized. The plant sterile line (or material) comprises plant cells, tissues, propagation materials, seedlings, mature plants and the like.
In a preferred embodiment, the Rboh protein of the invention may comprise the sequence of amino acids as shown in any one of SEQ ID NOs 1-7. However, it is not limited thereto because the amino acid sequence of the protein may differ according to the plant species or variety. In other words, it may be a mutant protein or an artificial variant having an amino acid sequence comprising substitution, deletion, insertion or addition of one or several amino acids at one or more positions of the amino acid sequence shown in any one of SEQ ID NOs: 1 to 7, as long as it contributes to the cultivation of a plant sterile line by attenuating the activity of the protein. The "several" herein may differ depending on the position or type of the three-dimensional structure of the amino acid residues in the protein, but especially means 2 to 20, especially 2 to 10, more especially 2 to 5. Furthermore, the substitution, deletion, insertion, addition or inversion of amino acids includes those due to artificial variants or natural mutations depending on the individual or kind of plant.
The activity of a Rboh protein of the invention may be reduced (attenuated) by: 1) a partial or complete deletion of the polynucleotide encoding the protein, or a substitution or insertion of one or more nucleotides or nucleotide fragments, 2) a modification of the expression control sequences to reduce expression of the polynucleotide, 3) a modification of sequences on the chromosome or 4) a combination thereof.
In the above, a vector for chromosomal gene insertion can be used to carry out partial or complete deletion of a polynucleotide encoding a protein by replacing a polynucleotide encoding an endogenous target protein with a marker gene or a polynucleotide in which a partial nucleotide sequence is deleted. The length of the "partial" deletion may vary depending on the type of polynucleotide, but is especially from 2bp to 300bp, more especially from 2bp to 100bp, more especially from 1bp to 5 bp. Substitution of single or multiple nucleotides can be achieved using mutation techniques, and insertion or substitution of nucleotide fragments can be achieved using homologous recombination techniques.
The expression control sequences may also be modified to reduce polynucleotide expression by: mutations are induced in the expression control sequence by deletion, insertion, conservative or non-conservative substitution of the nucleotide sequence, or a combination thereof to further weaken the activity of the expression control sequence, or to replace the expression control sequence with a less active sequence. Expression control sequences include sequences encoding a promoter, an operator sequence, a ribosome binding site, and sequences which control termination of transcription and translation.
Furthermore, the polynucleotide sequence on the chromosome may be modified to attenuate the activity of the protein by: mutations are induced in the sequence by deletion, insertion, conservative or non-conservative substitution of the nucleotide sequence, or a combination thereof to further attenuate the activity of the sequence, or to replace the polynucleotide sequence with a modified sequence in order to obtain a weaker protein activity.
The invention also relates to vectors comprising a polynucleotide of the invention, as well as genetically engineered host cells transformed with a vector or Rboh protein coding sequence of the invention, and methods for producing a polypeptide of the invention by recombinant techniques. The polynucleotide sequences of the present invention may be used to express or produce recombinant Rboh proteins by conventional recombinant DNA techniques (Science, 1984; 224: 1431). Generally, the following steps are performed: (1) transforming or transducing a suitable host cell with a polynucleotide (or variant) of the invention encoding a Rboh protein, or with a recombinant expression vector comprising the polynucleotide; (2) a host cell cultured in a suitable medium; (3) isolating and purifying the protein from the culture medium or the cells.
In the present invention, the polynucleotide sequence of the Rboh protein may be inserted into a recombinant expression vector. The term "recombinant expression vector" refers to a bacterial plasmid, bacteriophage, yeast plasmid, plant cell virus, mammalian cell virus, or other vector well known in the art. In general, any plasmid or vector can be used as long as it can replicate and is stable in the host. An important feature of expression vectors is that they generally contain an origin of replication, a promoter, a marker gene and translation control elements.
Methods well known to those skilled in the art can be used to construct expression vectors containing the DNA sequence encoding the Rboh protein and appropriate transcription/translation control signals. These methods include in vitro recombinant DNA techniques, DNA synthesis techniques, in vivo recombinant techniques, and the like. The DNA sequence may be operably linked to a suitable promoter in an expression vector to direct mRNA synthesis. The expression vector also includes a ribosome binding site for translation initiation and a transcription terminator.
Furthermore, the expression vector preferably comprises one or more selectable marker genes to provide phenotypic traits for selection of transformed host cells, such as dihydrofolate reductase, neomycin resistance and Green Fluorescent Protein (GFP) for eukaryotic cell culture, or tetracycline or ampicillin resistance for E.coli. Vectors comprising the appropriate DNA sequences described above, together with appropriate promoter or control sequences, may be used to transform appropriate host cells to enable expression of the protein. The host cell may be a prokaryotic cell, such as a bacterial cell; or lower eukaryotic cells, such as yeast cells; or higher eukaryotic cells, such as plant cells. Representative examples are: escherichia coli, Streptomyces, Agrobacterium; fungal cells such as yeast; plant cells, and the like.
When the polynucleotide of the present invention is expressed in higher eukaryotic cells, transcription will be enhanced if an enhancer sequence is inserted into the vector. Enhancers are cis-acting elements of DNA, usually about 10 to 300 base pairs, that act on a promoter to increase transcription of a gene.
It will be clear to one of ordinary skill in the art how to select appropriate vectors, promoters, enhancers and host cells. Transformation of a host cell with recombinant DNA can be carried out using conventional techniques well known to those skilled in the art. When the host is prokaryotic, e.g., E.coli, competent cells capable of DNA uptake can be harvested after exponential growth phase using CaCl2Methods, the steps used are well known in the art. Another method is to use MgCl2. If desired, transformation can also be carried out by electroporation. When the host is a eukaryote, the following DNA transfection methods may be used: calcium phosphate coprecipitation, conventional mechanical methods such as microinjection, electroporation, liposome encapsulation, etc.
The transformed plant may also be transformed by Agrobacterium transformation or gene gun transformation, such as leaf disk method. Transformed plant cells, tissues or organs can be regenerated into plants by conventional methods to obtain plants with altered tolerance.
The obtained transformant can be cultured by a conventional method to express the polypeptide encoded by the gene of the present invention. The medium used in the culture may be selected from various conventional media depending on the host cell used. The culturing is performed under conditions suitable for growth of the host cell. After the host cells have been grown to an appropriate cell density, the selected promoter is induced by suitable means (e.g., temperature shift or chemical induction) and the cells are cultured for an additional period of time.
A part or all of the polynucleotide of the present invention can be used as a probe to be fixed on a microarray or a DNA chip (also called a "gene chip") for analyzing the differential expression analysis of genes in tissues. In vitro amplification by RNA-polymerase chain reaction (RT-PCR) using primers specific for GDSL protein also allows detection of the GDSL protein transcript.
The invention further provides a method for restoring fertility to a sterile line of a plant of the invention, comprising the step of controlling the ambient temperature of the sterile line propagation material during growth. At least in the development period of the plant anther, preferably the highest environment temperature of the flowering phase is less than 25 ℃, preferably less than or equal to 24 ℃, preferably less than or equal to 23 ℃, preferably less than or equal to 22 ℃, preferably less than or equal to 21 ℃, preferably less than or equal to 20 ℃, or in the development period of the plant anther, preferably the flowering phase, the fluctuation range of the growth environment temperature is controlled within 12-24 ℃, preferably 16-22 ℃, preferably 18-22 ℃. The fertility restoration refers to that in the growth process of the propagation material, male gametes can basically develop normally and are fertilized with female gametes (restoring lines) to generate seeds, and the seeds still have the characteristic of high-temperature sterility.
The temperature range of the invention is the temperature fluctuation range in the growth process of crops, and the fluctuation mode can be instantaneous temperature rise or temperature fall, and can also be gradient slow temperature rise or temperature fall. Preferably, it simulates or equates to the range and law of natural temperature variation, and the gradient temperature rise and fall are accomplished within a certain period of time, for example, 0.5 ℃ to 5 ℃, specifically, 0.5 ℃ or 1 ℃ or 1.5 ℃ or 2 ℃ or 3 ℃ or 4 ℃ per hour, and the temperature change mode may be, for example, a temperature rise of 16 ℃ in the morning, a temperature rise of 22 ℃ in the noon at 12, a temperature fall of 20 ℃ in the afternoon at 14, and a temperature fall of 16 ℃ in the afternoon at six. Preferably, pollen development aborts without affecting plant growth at the highest temperature (25-35 ℃, preferably 26-32 ℃, more preferably 28-30 ℃) for 1-3h, preferably 2 h. The temperature range of the invention can fluctuate up and down by +/-5 ℃, preferably +/-3 ℃, without greatly influencing the technical effect of the invention. In addition, the low temperature and the high temperature suitable for different crops are different, the technical effect of the invention can be obtained by adjusting the temperature range of the invention up and down appropriately by a person skilled in the art based on the growth and development characteristics of the crops, and the technical scheme obtained based on the growth characteristics of different crops is also included in the scope of the invention.
The invention also provides a method of identifying a male sterile line or propagation material thereof, comprising the step of detecting the expression or activity of a Rboh gene or protein thereof. The propagation material comprises callus, root, stem, leaf, flower, seed, etc. The identification method can be a gene and protein detection method commonly used in the field, and comprises Northern hybridization, RT-PCR (reverse transcription PCR), a biochemical reaction detection method, an immunological detection method and the like.
The main advantages of the invention include:
(a) provides a method for creating a plant sterile line by reducing the expression or activity of a Rboh gene or a protein coded by the Rboh gene in a plant, and can greatly enrich the diversity of male sterile resources.
(b) The method for transforming the characters of the sterile plants into fertile plants by culturing the sterile line under the low-temperature condition is provided, so that the sterile line can preserve seeds and the production cost of the seeds is reduced.
(c) The male sterile plant obtained by the invention can be used as a female parent in two-line hybrid seed production, and the heterosis is kept in hybrid breeding.
The invention will be further illustrated with reference to the following specific examples. It should be understood that these examples are for illustrative purposes only and are not intended to limit the scope of the present invention. Experimental procedures without specific conditions noted in the following examples, molecular cloning is generally performed according to conventional conditions such as Sambrook et al: the conditions described in the Laboratory Manual (New York: Cold Spring Harbor Laboratory Press,1989), or according to the manufacturer's recommendations. Unless otherwise specified, materials and reagents used in the examples are all commercially available products.
Example 1 Effect of OsRBOH knockout on Rice development
1. Design of Gene editing sites
Designing a gene editing carrier for knocking out OsRBOHA, OsRBOHB and OsRBOHE simultaneously, selecting target sites of the OsRBOHA, OsRBOHB and OsRBOHE genes respectively, and designing a sgRNA sequence aiming at the target sites:
OsRBOHA:TCCGACTTCGCCGAATGCAT(SEQ ID NO.:15)
OsRBOHB:GCAATCTGGGCTCGAGCAAC(SEQ ID NO.:16)
OsRBOHE:GGTGAGGCAGTTCGCGTCGA(SEQ ID NO.:17)
2. gene editing vector construction
A) And (3) taking the SF55-scaffold-tRNA plasmid as a template, and amplifying the target fragment by using a positive/reverse primer tRNA-gRBBOHA-F/tRNA-RBOHB-R to obtain a PCR product (the length is about 230bp, and the primer annealing temperature is 58).
Figure BDA0002399018850000181
The PCR reaction conditions are as follows: pre-denaturation at 95 ℃ for 5min, denaturation at 98 ℃ for 30 sec, annealing at 58 ℃ for 30 sec, extension at 72 ℃ for 10 sec, 35 cycles, and extension at 72 ℃ for 5min
B) And (3) taking SF55-scaffold-tRNA plasmid as a template, and amplifying a target fragment by using a forward/reverse primer gRBOBB-gRNA-F/tRNA-gRBOHE-gRNA-R to obtain a PCR product (the length is about 230bp, and the primer annealing temperature is 58).
Figure BDA0002399018850000182
The PCR reaction conditions are as follows: pre-denaturation at 95 ℃ for 5min, denaturation at 98 ℃ for 30 sec, annealing at 58 ℃ for 30 sec, extension at 72 ℃ for 10 sec, 35 cycles, and extension at 72 ℃ for 5min
C) Digestion of CRISPR-Cas9 vector (35S-OsU6-tRNA) with BsaI
D) Respectively carrying out glue running recovery on each fragment
E) Homologous recombination is carried out on the cloned fragment and the recovered fragment by enzyme digestion of the vector
Figure BDA0002399018850000183
The PCR reaction conditions are as follows: 30min at 50 DEG C
F) E.coli is transformed, and the monoclonal M13F/T6-R is picked for sequencing to verify that the fragment is successfully connected into the vector.
3. Genetic transformation
(A) The plasmid constructed above is directly transformed into agrobacterium EHA 105:
(1) adding plasmid DNA into Agrobacterium infected cells, ice-cooling for 30min, placing in liquid nitrogen for 5min, immediately placing in water bath at 37 deg.C for 5min, and placing on ice for 5min
(2) Taking out the centrifuge tube, adding 700ul YEP culture medium, and shake culturing for 2-4 hr.
(3) Taking out the bacterial liquid and coating the bacterial liquid and a YEP culture medium plate containing corresponding antibiotics, and carrying out inverted culture in an incubator until bacterial colonies are visible for about 2 days.
(B) Rice transgenosis:
(1) inducing callus, soaking the shelled seed with NaClO for disinfection, washing with sterile water, inoculating to NB inducing culture medium, and culturing in incubator for 10-15 days.
(2) Subculturing the callus, cutting the induced callus with a single-sided knife, placing into a subculture medium, and culturing under the same conditions.
(3) And (3) carrying out agrobacterium infection and resistant callus screening, carrying out propagation on the agrobacterium EH105 strain transferred into the target vector, and then soaking the callus with a better state.
(4) Sucking out or pouring out the bacterial liquid, and culturing the callus in a dark box for 48-72 h.
(5) The calli after the end of the co-culture were washed by soaking in sterilized water resistant to Carbenicilin to remove Agrobacterium.
(6) The callus was blotted dry and inoculated on a selection medium containing antibiotics and cultured under light for two weeks.
(7) Callus differentiation culture, selecting callus with vigorous growth (resistant callus), and transferring to differentiation culture medium containing antibiotic. Most of the callus rapidly grows within one week, and green spots appear on the callus, and seedlings are rapidly differentiated from the green callus.
4. Plant culture and mutant screening
(1) Transferring the differentiated robust seedlings to a rooting culture medium containing antibiotics for rooting culture for one week, hardening the seedlings at room temperature for 2-3 days, cultivating the seedlings in a greenhouse matrix for 15-20 days, and transplanting the seedlings to a field.
(2) Taking leaves of each plant, extracting genome DNA, and designing primers at two sides of the target site. The amplified fragments were subjected to Sanger sequencing to determine the genotype of each plant.
(3) And detecting mutation types of the OsRBOHA, OsRBOHB and OsRBOHE genes, screening the T0 generation to knock out the mutation types of the OsRBOHA, OsRBOHB and OsRBOHE genes, and continuously expanding and propagating for 4-5 generations to continuously increase mutation type groups.
(4) The mutants were treated at different temperatures and the fertility of the mutants was observed at high temperatures.
5. Results of the experiment
Pollen of the mutant rice has abortion phenomenon relative to wild type under high temperature, and can not pollinate normally.
Example 2 Effect of knocking out LeRBOHE, LeRBOHB, LeRBOH genes on tomato development
1. Gene editing site design
Designing a gene editing carrier for knocking out LeRBOHE, LeRBOHB and LeRBOH simultaneously, selecting target sites of the LeRBOHE, LeRBOHB and LeRBOH genes respectively, and designing a sgRNA sequence aiming at the target sites:
LeRBOHE:TCTAGCAAGTAATCCGTCTT(SEQ ID NO.:18)
LeRBOHB:TAAGCACAACCACTGTCGAC(SEQ ID NO.:19)
LeRBOH:TAGCTAGCAAGCTCGAAAAG(SEQ ID NO.:20)
2. construction of CRISPR-Cas9 gene editing tool
A) And (3) taking SF55-scaffold-tRNA plasmid as a template, and amplifying a target fragment by using a forward/reverse primer gRBOOHE-F/gRBOOB-R to obtain a PCR product (the length is about 230bp, and the primer annealing temperature is 58).
Figure BDA0002399018850000201
The PCR reaction conditions are as follows: pre-denaturation at 95 ℃ for 5min, denaturation at 98 ℃ for 30 sec, annealing at 58 ℃ for 30 sec, extension at 72 ℃ for 10 sec, 35 cycles, and extension at 72 ℃ for 5min
B) And (3) amplifying a target fragment by using a positive/reverse primer gRBBOHB-F/gRBOH-R by using the scaffold-tRNA plasmid as a template to obtain a PCR product (the length is about 230bp, and the primer annealing temperature is 58).
Figure BDA0002399018850000202
Figure BDA0002399018850000211
The PCR reaction conditions are as follows: pre-denaturation at 95 ℃ for 5min, denaturation at 98 ℃ for 30 sec, annealing at 58 ℃ for 30 sec, extension at 72 ℃ for 10 sec, 35 cycles, and extension at 72 ℃ for 5min
C) Digestion of CRISPR-Cas9 vector (35S-AtU6-tRNA) with BsaI
D) Respectively carrying out glue running recovery on each fragment
E) Homologous connection is carried out on the cloned fragment and the recovered fragment by vector enzyme digestion
Figure BDA0002399018850000212
The PCR reaction conditions are as follows: 30min at 50 DEG C
F) E.coli is transformed, and the monoclonal M13F/T6-R is picked for sequencing to verify that the fragment is successfully connected into the vector.
3. Genetic transformation of vectors
A) The plasmid constructed above is directly transformed into agrobacterium EHA 105:
(1) plasmid DNA is added into agrobacterium tumefaciens competent cells, then the cells are subjected to ice bath for 30min, and then the cells are put into liquid nitrogen for 5min, then immediately put into a water bath kettle at 37 ℃ for water bath for 5min, and then placed on ice for 5 min.
(2) Taking out the centrifuge tube, adding 700ul YEP culture medium, and shake culturing for 2-4 hr.
(3) Taking out the bacterial liquid and coating the bacterial liquid and a YEP culture medium plate containing corresponding antibiotics, and carrying out inverted culture in an incubator until bacterial colonies are visible for about 2 days.
B) Tomato transgenosis:
(1) obtaining aseptic seedlings: sterilizing with 75% ethanol for 30-60s, washing with sterile water for 1-3 times, sterilizing with (1% of available chlorine) NaClO for 15min, and washing with sterile water for 5 times. Seed is soaked in sterile water for 6h, and then sown and cultured in seed culture medium. Culturing at 25 deg.C in dark for 2-3 days, and culturing under light.
(2) Pretreatment of explants: when the cotyledon is completely unfolded and the first true leaf is slightly exposed, cutting the cotyledon into 5mm square leaves, placing the leaves in a pre-culture medium, and performing dark culture at 25 ℃ for 2 d.
(3) Activating agrobacterium and preparing bacterial liquid: the cells were cultured at 28 ℃ with shaking until OD600 was 0.6-0.8. After centrifugation, the cells were resuspended in an equal volume of infection solution.
(4) Infection and co-culture: infecting for 15min, sucking off the excess bacteria solution with sterile filter paper, placing on co-culture medium, and dark culturing at 25 deg.C for 2 d.
(5) Screening and culturing: the cotyledons were transferred to A2 resistant medium. The first 2 subcultures are performed once every 5d or so, and the later subcultures are performed once every 14d or so.
(6) Differentiation culture: after callus formation, it was transferred to A3 medium to induce sprouting and seedling formation. Subculturing once every 14d or so.
4. Plant culture and mutant screening
(1) When the differentiated seedlings grow to 1-2cm, cutting the seedlings, and transferring the cut seedlings to a rooting culture medium. And sampling and detecting after the seedling grows out of the root.
(2) Taking leaves of each plant, extracting genome DNA, and designing primers at two sides of the target site. The amplified fragments were subjected to Sanger sequencing to determine the genotype of each plant.
(3) And detecting mutation types of LeRBOHE, LeRBOHB and LeRBOHA genes, screening the T0 generation to knock out the mutation types of the LeRBOHE, LeRBOHB and LeRBOHA genes, and continuously expanding propagation through 4-5 generations to continuously increase mutation type groups.
(4) The mutants were treated at different temperatures and the fertility of the mutants was observed at high temperatures.
5. Results of the experiment
Pollen of the mutant tomato has abortion phenomenon relative to wild type at high temperature, and can not be pollinated normally.
Example 3 Effect of Arabidopsis thaliana rboh mutations on plant development
Obtaining a functional deletion mutant rbohe caused by inserting an arabidopsis respiratory burst peroxidase gene T-DNA, and processing under different temperature conditions to obtain a temperature-sensitive male sterile plant.
The T-DNA insertion mutant, rbohe (SALK-150096C), used in this study was obtained from ABRC and was Col-0 ecotype in the background.
The method for planting the arabidopsis material in the experiment comprises the following steps:
(1) arabidopsis thaliana Col-0 and mutant rbohe seeds were surface sterilized and plated on 1/2MS medium. Vernalizing at 4 deg.C for 3d, transferring to 20-22 deg.C long illumination (16h) strip incubator, and culturing for 4-5 d.
(2) Transplanting the seedlings in the culture dish into the green manure-watered soil, transferring the seedlings into a greenhouse for culture, moisturizing the seedlings by using a plastic film, and cutting a few air holes on the plastic film.
(3) Removing the plastic film about one week, and pouring the nutrient solution once every week until the plants bolting.
(4) Placing a part of Col-0 and mutant rbohe which are to be bolting quickly in a temperature-changing illumination incubator, wherein the temperature is set as follows:
Time temperature of Illumination device
9:00 22℃ Illumination of light
12:00 26℃ Illumination of light
14:00 30℃ Illumination of light
16:00 26℃ Illumination of light
19:00 22℃ Illumination of light
22:00-9:00 18℃ Darkness
(5) The remaining Arabidopsis thaliana was placed in a 20-22 ℃ light strip incubator for further growth.
(6) And 3, Alexander staining observation of pollen development: soaking the arabidopsis thaliana anther (in the bud exposure period) which is not subjected to pollen scattering in the alexander dye solution, standing at room temperature for 4-8 hours, and taking a picture by microscope observation.
(7) The treatments were continued at different temperatures and the setting rate was observed after the Arabidopsis setting.
5. Results of the experiment
(1) Arabidopsis thaliana rbohe mutant plants cannot seed under continuously changing temperature conditions of 18 ℃ to 30 ℃, can seed normally when the temperature is reduced to temperature changing conditions of 20 ℃ to 22 ℃, and can seed normally under both conditions when the wild type plants are grown (see figure 1).
(2) Alexander staining showed that the Arabidopsis rbohe mutant could not produce normal pollen under the continuously varying temperature-changing conditions of 18 ℃ -30 ℃ and normal pollen could be produced when the temperature was reduced to the temperature-changing conditions of 20 ℃ -22 ℃ (see FIG. 2).
(3) Scanning electron microscope results show that the arabidopsis thaliana rbohe mutant has pollen abortion under the continuously changing temperature-changing condition of 18-30 ℃, and normal pollen can be produced when the temperature is reduced to the temperature-changing condition of 20-22 ℃ (see figure 3).
Conclusion of the experiment
The research of the invention finds that the respiratory burst peroxidase gene RBOH specifically expressed in the plant anther is reduced, inhibited or knocked out, so that the plant can show male sterility under the high-temperature condition and can be used as a parent to prepare hybrid seeds. Can restore fertility at low temperature and seed normally.
Sequence listing
<110> Shunheng Biotech Co., Ltd
<120> a method for creating a temperature-sensitive male-sterile plant
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Ser Ile Leu Lys Asp Leu Leu Asn Asn Ser Arg Asp Glu Gln Thr Asp
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His Gly Val Asp Ile Leu Ser Gly Thr Arg Val Arg Thr His Phe Ala
885 890 895
Arg Pro Asn Trp Lys Glu Val Phe Ser Ser Ile Ala Arg Lys His Pro
900 905 910
Asn Ser Thr Val Gly Val Phe Tyr Cys Gly Ile Gln Thr Val Ala Lys
915 920 925
Glu Leu Lys Lys Gln Ala Gln Asp Met Ser Gln Lys Thr Thr Thr Arg
930 935 940
Phe Glu Phe His Lys Glu His Phe
945 950
<210> 5
<211> 624
<212> PRT
<213> tomato (Lycopersicon esculentum)
<400> 5
Met Val Ser Ala Ser Ala Asn Lys Leu Ser Lys Leu Lys Glu Asn Ala
1 5 10 15
Gly Glu Tyr Ala Cys Leu Ile Met Glu Glu Leu Asp Pro Glu Asn Val
20 25 30
Gly Tyr Ile Glu Ile Trp Gln Leu Glu Thr Leu Leu Leu Gln Arg Asp
35 40 45
Asn Tyr Met Ser His Ser Thr Pro Leu Ser Thr Thr Thr Val Asp Trp
50 55 60
Ser Pro Asn Ile Gly Thr Ser Asn Ala Asn Asn Ile Val Lys Lys Ala
65 70 75 80
Ser Arg Thr Val Lys Cys Leu Val Leu Glu Asn Trp His Arg Gly Leu
85 90 95
Ile Ile Leu Leu Trp Leu Leu Ala Met Ile Gly Leu Phe Ile Trp Lys
100 105 110
Phe Met Gln Tyr Arg Lys Met Glu Ala Phe Gln Val Met Gly Tyr Cys
115 120 125
Leu Ala Thr Ala Lys Gly Ala Ala Glu Thr Leu Lys Phe Asn Met Ala
130 135 140
Leu Ile Leu Leu Pro Val Cys Arg Asn Met Leu Thr Arg Leu Arg Ser
145 150 155 160
Thr Arg Ala Arg Ile Leu Ile Pro Phe Asp Asp Asn Ile Asn Phe His
165 170 175
Lys Ile Ile Ala His Ala Ile Ala Val Ala Ile Ile Leu His Ala Ala
180 185 190
Asn His Leu Ala Cys Asp Phe Pro His Leu Val Asn Ser Ser Pro Glu
195 200 205
Lys Phe Ala Leu Ile Ala Ser Asp Phe Asp Lys Leu Lys Pro Ser Tyr
210 215 220
Ile Ser Leu Leu Thr Gly Val Glu Gly Ile Thr Gly Ile Ser Met Val
225 230 235 240
Ile Leu Met Thr Ile Ala Phe Ile Leu Ala Thr Arg Arg Phe Arg Arg
245 250 255
Ser Val Pro Lys Leu Pro Thr Pro Leu Asn Arg Leu Thr Gly Phe Asn
260 265 270
Ala Phe Trp Tyr Ser His His Leu Leu Ala Phe Val Tyr Ile Leu Leu
275 280 285
Leu Leu His Gly Thr Phe Leu Phe Phe Val His Lys Trp Tyr Gln Lys
290 295 300
Thr Thr Trp Met Tyr Ile Ser Ile Pro Leu Ile Leu Tyr Ile Ala Glu
305 310 315 320
Arg Thr Leu Arg Thr Trp Arg Ser Glu Asp Tyr Ala Val Lys Ile Leu
325 330 335
Lys Val Ser Val Leu Pro Gly Asp Val Leu Ser Leu Ile Met Ser Lys
340 345 350
Pro Ala Gly Phe Lys Tyr Lys Ser Gly Gln Tyr Ile Phe Leu Gln Cys
355 360 365
Pro Thr Ile Ser Ser Phe Glu Trp His Pro Phe Ser Ile Thr Ser Ala
370 375 380
Pro Gly Asp Asp Tyr Ile Ser Val Tyr Ile Arg Ile Val Gly Asp Trp
385 390 395 400
Thr Lys Glu Leu Lys Arg Val Phe Thr Glu Ile Pro Ala Cys Leu Val
405 410 415
Gly Arg Ala Lys Phe Glu Glu Gln Glu Asn Val Asp Gln Arg Gly Leu
420 425 430
Pro Arg Leu Leu Val Asp Gly Pro Tyr Gly Ala Pro Ala Gln Asp Tyr
435 440 445
Gln Asn Tyr Asp Val Leu Leu Leu Val Gly Leu Gly Ile Gly Ala Thr
450 455 460
Pro Phe Ile Ser Ile Leu Lys Asp Leu Leu Asn Asn Thr Arg Ala Asp
465 470 475 480
Glu Asn Val Asp Ser Asn Thr Glu Thr Ser Ala Ser Asp Asp Ser Trp
485 490 495
Thr Ser Phe Gly Ser Ser Ser Ser Ala Ser Ser Val Lys Lys Lys Ser
500 505 510
Gln Arg Ala Arg Ser Ala His Phe Tyr Trp Val Thr Arg Glu Pro Gly
515 520 525
Ser Leu Glu Trp Phe Lys Gly Val Met Asn Glu Val Ala Glu Met Asp
530 535 540
His Lys Gly Gln Ile Glu Met His Asn Tyr Leu Thr Ser Val Tyr Glu
545 550 555 560
Glu Gly Asp Ala Arg Ser Thr Leu Ile Thr Met Leu Gln Ala Leu Asn
565 570 575
His Ala Lys His Gly Val Asp Ile Leu Ser Gly Thr Lys Val Arg Thr
580 585 590
His Phe Ala Arg Pro Lys Trp Thr Glu Val Phe Lys Arg Ile Ala Leu
595 600 605
Lys His Pro Tyr Ser Thr Val Gly Lys Glu Phe Leu Gln Ser Gln Val
610 615 620
<210> 6
<211> 881
<212> PRT
<213> tomato (Lycopersicon esculentum)
<400> 6
Met Asn Glu Gly Ser Glu Arg Gly Glu Glu Glu Ala Pro Pro Asn Gly
1 5 10 15
Phe Leu Ala Arg Ser Ala Ser Ala Ala Ser Lys Leu Arg Arg Lys Phe
20 25 30
Ser Trp Ile Arg Ser Pro Ser Val Met Ser Arg Thr Ser Ala Ala Ala
35 40 45
Ser Glu Val Ser Asp Asp Asn Tyr Gln Leu His His Thr Ser Asn Thr
50 55 60
Leu Ser Ala Arg Glu Glu Met Lys Ser Lys Leu Lys Leu Val Arg Ser
65 70 75 80
Lys Ser Thr Ala Gln Arg Ala Leu Gly Gly Leu Arg Phe Ile Ser Lys
85 90 95
Thr Thr Gly Glu Ser Asp Thr Asn Val Leu Trp Lys Lys Val Glu Ala
100 105 110
Arg Phe Asp Ala Leu Ala Lys Asp Gly Leu Leu Ala Arg Glu Asp Phe
115 120 125
Gly Glu Cys Ile Gly Met Glu Asp Ser Lys Glu Phe Ala Val Gly Val
130 135 140
Phe Asp Ala Leu Ile Arg Arg Arg Arg Gln Lys Ala Ala Lys Ile Thr
145 150 155 160
Lys Ile Glu Leu His Asp Phe Trp Leu Gln Ile Ser Asp Gln Ser Phe
165 170 175
Asp Ala Arg Leu Gln Ile Phe Phe Asp Met Ala Asp Ser Asn Gly Asp
180 185 190
Gly Lys Ile Thr Arg Asp Glu Val Gln Glu Leu Ile Met Leu Ser Ala
195 200 205
Ser Ala Asn Lys Leu Ser Lys Leu Lys Glu Arg Ala Ala Glu Tyr Ala
210 215 220
Ser Leu Ile Met Glu Glu Leu Asp Pro Glu Cys Leu Gly Tyr Ile Glu
225 230 235 240
Leu Trp Gln Leu Glu Thr Leu Leu Leu Gln Arg Asp Asn Tyr Met Thr
245 250 255
Tyr Ser Arg Pro Leu Ser Thr Thr Ser Val Gly Trp Gly Gln Asn Leu
260 265 270
Gly Thr Leu Asn Lys Thr Lys Asn Leu Val Lys Arg Ala Ser Tyr Ala
275 280 285
Phe Lys Cys Leu Val Leu Asp Asn Trp Gln Arg Gly Trp Ile Leu Leu
290 295 300
Leu Trp Val Met Val Met Ala Val Leu Phe Thr Trp Lys Phe Leu Gln
305 310 315 320
Tyr Arg Gln Arg Ala Ala Phe Gln Val Met Gly Tyr Cys Leu Ala Thr
325 330 335
Ala Lys Gly Ala Ala Glu Thr Leu Lys Leu Asn Met Ala Leu Ile Leu
340 345 350
Leu Pro Val Cys Arg Asn Ile Leu Thr Trp Leu Arg Ser Thr Arg Ala
355 360 365
Lys Leu Leu Leu Pro Phe Asp Asp Asn Ile Asn Phe His Lys Val Lys
370 375 380
Cys Thr Gln Thr Glu Tyr Ile Val Gln His Pro Arg Ile Phe Leu Thr
385 390 395 400
Met Leu Phe Gln Leu Gln Ile Ile Ala Tyr Ala Ile Gly Val Gly Ile
405 410 415
Leu Leu His Ala Gly Asn His Leu Ala Cys Asp Phe Pro Arg Leu Ile
420 425 430
Asn Ser Ser Pro Glu Lys Phe Ala Leu Ile Ala Ser Asp Phe Asp Asn
435 440 445
Val Lys Pro Thr Tyr Lys Ser Leu Leu Thr Gly Ile Glu Gly Val Thr
450 455 460
Gly Ile Ala Met Val Ile Leu Met Ala Ile Val Phe Thr Leu Ala Thr
465 470 475 480
Arg Thr Phe Arg Arg Asn Val Leu Lys Leu Pro Pro Pro Phe Ser Arg
485 490 495
Leu Thr Gly Phe Asn Ala Phe Trp Tyr Ser His His Leu Leu Ala Val
500 505 510
Val Tyr Val Leu Leu Leu Val His Gly Thr Phe Leu Phe Leu Val His
515 520 525
Gln Trp Trp Gln Lys Thr Thr Trp Met Tyr Ile Ser Met Pro Leu Leu
530 535 540
Leu Tyr Val Ala Glu Arg Ser Leu Arg Thr Cys Arg Ser Glu His Tyr
545 550 555 560
Ala Ala Lys Ile Leu Lys Val Ser Val Leu Pro Gly Asp Val Phe Ser
565 570 575
Leu Thr Met Ser Lys Pro Asn Ser Phe Lys Tyr Lys Ser Gly Gln Tyr
580 585 590
Ile Phe Leu Gln Cys Pro Thr Ile Ser Ser Phe Glu Trp His Pro Phe
595 600 605
Ser Ile Thr Ser Ala Pro Gly Asp Asp Tyr Leu Ser Val His Ile Arg
610 615 620
Met Val Gly Asp Trp Thr Asn Glu Leu Lys Arg Val Phe Thr Glu Asp
625 630 635 640
Asp Ser Ser Ala Cys Glu Ile Gly Arg Ala Lys Phe Arg Glu Arg Gly
645 650 655
Asn Val Asp Gln Arg Gly Leu Pro Arg Leu Leu Val Asp Gly Pro Tyr
660 665 670
Gly Ala Pro Ala Gln Asp Tyr Gln Asn Tyr Asp Val Leu Leu Leu Val
675 680 685
Gly Leu Gly Ile Gly Ala Thr Pro Phe Ile Ser Ile Leu Lys Asp Leu
690 695 700
Leu Asn Asn Ser Arg Ser Glu Glu Leu Asp Ser Thr Thr Glu Thr Ser
705 710 715 720
Ala Ser Asp Asp Ser Trp Thr Ser Leu Ala Ser Ser Ser Met Ala Ser
725 730 735
Thr Gly Lys Lys Lys Ser Leu Arg Thr Lys Ser Ala His Phe Tyr Trp
740 745 750
Val Thr Arg Glu Pro Gly Ser Phe Glu Trp Phe Lys Gly Val Met Asn
755 760 765
Glu Met Ala Glu Ile Asp His Lys Gly Leu Ile Glu Met His Asn Tyr
770 775 780
Leu Thr Ser Val Tyr Glu Glu Gly Asp Ala Arg Ser Thr Leu Ile Thr
785 790 795 800
Met Val Gln Ala Leu Asn His Ala Lys His Gly Val Asp Ile Leu Ser
805 810 815
Gly Thr Gln Val Arg Thr His Phe Ala Arg Pro Asn Trp Lys Glu Val
820 825 830
Phe Asn Lys Ile Ala Ser Lys His Pro Tyr Ser Thr Val Gly Val Phe
835 840 845
Tyr Cys Gly Leu Pro Ala Leu Ala Lys Glu Leu Lys Lys Leu Ser Gln
850 855 860
Glu Leu Thr Tyr Lys Thr Ser Thr Arg Phe Glu Phe His Lys Glu Tyr
865 870 875 880
Phe
<210> 7
<211> 865
<212> PRT
<213> tomato (Lycopersicon esculentum)
<400> 7
Met Glu Ile Glu Asn Thr Thr Asp Ser Val Arg Gly Ser Arg Val Gly
1 5 10 15
Phe Ser Gly Ser Leu Val Ser Gly Lys Lys Ser Ala Arg Phe Lys Asp
20 25 30
Asp Glu Ser Tyr Val Glu Ile Thr Leu Asp Val Arg Asp Asp Ser Val
35 40 45
Leu Val Gln Asn Ile Lys Gly Ala Asp His Glu Ala Ala Leu Leu Ala
50 55 60
Ser Lys Leu Glu Lys Arg Pro Asn His Thr Leu Gly Ser Gln Leu Ser
65 70 75 80
Phe His Leu Lys Gln Val Ser Lys Glu Leu Lys Arg Met Thr Ser Ser
85 90 95
Asn Lys Phe Gln Lys Ile Asp Arg Ser Lys Ser Gly Ala Ala Arg Ala
100 105 110
Leu Arg Gly Leu Gln Phe Met Asn Arg Asn Val Gly Thr Glu Gly Trp
115 120 125
Ser Glu Val Glu Ser Arg Phe Asp Gln Leu Ala Val Asp Gly Met Leu
130 135 140
Ala Lys Thr Leu Phe Gly Gln Cys Ile Gly Met Lys Glu Ser Ser Glu
145 150 155 160
Phe Ala Glu Glu Leu Phe Asp Ala Leu Ala Arg Lys Arg Cys Ile Thr
165 170 175
Ser Pro Ala Val Thr Lys Asp Glu Leu His Glu Phe Trp Glu Gln Ile
180 185 190
Thr Asp Thr Ser Phe Asp Ala Arg Leu Gln Thr Phe Phe Asp Met Val
195 200 205
Asp Lys Asp Ala Asp Gly Arg Ile Thr Glu Glu Glu Val Lys Glu Ile
210 215 220
Ile Ser Leu Ser Ala Ser Ala Asn Lys Leu Ser Lys Ile Glu Asp Asn
225 230 235 240
Ser Asp Glu Tyr Ala Ala Leu Ile Met Glu Glu Leu Asp Pro Gly Asn
245 250 255
Val Gly Tyr Ile Glu Leu Tyr Asn Leu Glu Thr Leu Leu Leu Gln Ala
260 265 270
Pro Ser His Ser Met Asn Leu Ser Thr Asn Ser Arg Val Leu Ser Gln
275 280 285
Met Leu Ser Gln Lys Leu Lys Pro Thr Lys Glu Arg Asn Pro Phe Lys
290 295 300
Arg Cys Lys Arg Arg Leu Asp Tyr Phe Ile Glu Asp Asn Trp Lys Arg
305 310 315 320
Ile Trp Val Met Val Leu Trp Leu Ser Ile Cys Ala Gly Leu Phe Thr
325 330 335
Trp Lys Phe Ile Gln Tyr Lys Arg Arg Ala Val Phe Asp Val Met Gly
340 345 350
Tyr Cys Val Ser Val Ala Lys Gly Gly Ala Glu Thr Thr Lys Phe Asn
355 360 365
Met Ala Leu Val Leu Leu Pro Val Cys Arg Asn Thr Ile Thr Trp Leu
370 375 380
Arg Ser Arg Thr Lys Leu Gly Lys Ile Ile Pro Phe Asp Asp Asn Ile
385 390 395 400
Asn Phe His Lys Val Ile Ala Phe Gly Val Ala Val Gly Val Gly Leu
405 410 415
His Ala Ile Ser His Leu Thr Cys Asp Phe Pro Arg Leu Leu His Ala
420 425 430
Thr Asp Glu Glu Tyr Glu Pro Met Lys Pro Phe Phe Gly Asp Glu Arg
435 440 445
Pro Asn Asn Tyr Trp Trp Phe Val Lys Gly Thr Glu Gly Trp Thr Gly
450 455 460
Val Val Met Val Val Leu Met Ile Ile Ala Tyr Val Leu Ala Gln Pro
465 470 475 480
Trp Phe Arg Arg Asn Arg Leu Asn Leu Pro Ser Thr Ile Lys Lys Leu
485 490 495
Thr Gly Phe Asn Ala Phe Trp Tyr Ser His His Leu Phe Val Ile Val
500 505 510
Tyr Val Leu Phe Ile Ile His Gly Tyr Phe Leu Tyr Leu Ser Lys Lys
515 520 525
Trp Tyr Lys Lys Thr Thr Trp Met Tyr Ile Ala Val Pro Met Ile Leu
530 535 540
Tyr Ala Cys Glu Arg Leu Leu Arg Ala Phe Arg Ser Gly Tyr Lys Ala
545 550 555 560
Val Arg Ile Leu Lys Val Ala Val Tyr Pro Gly Asn Val Met Ala Val
565 570 575
His Met Ser Lys Pro Gln Gly Phe Lys Tyr Thr Ser Gly Gln Tyr Ile
580 585 590
Phe Val Asn Cys Ser Asp Val Ser Ser Phe Gln Trp His Pro Phe Thr
595 600 605
Ile Ser Ser Ala Pro Gly Asp Asp Tyr Leu Ser Val His Ile Arg Thr
610 615 620
Leu Gly Asp Trp Thr Ser Gln Leu Lys Thr Leu Phe Ser Lys Val Cys
625 630 635 640
Glu Pro Pro Thr Gly Asp Gln Ser Gly Leu Leu Arg Ala Asp Ile Gly
645 650 655
Lys Ala Asp Tyr Lys Pro Arg Leu Pro Lys Leu Leu Ile Asp Gly Pro
660 665 670
Tyr Gly Ala Pro Ala Gln Asp Tyr Lys Lys Tyr Asp Val Val Leu Leu
675 680 685
Val Gly Leu Gly Ile Gly Ala Thr Pro Leu Ile Ser Ile Val Lys Asp
690 695 700
Val Leu Asn Asn Ile Asn Gln Gln Lys Asp Ile Glu Asp Gly Thr Lys
705 710 715 720
Gly Ser Lys Lys Ser Pro Phe Ala Thr Lys Arg Ala Tyr Phe Tyr Trp
725 730 735
Val Thr Arg Glu Gln Gly Ser Phe Glu Trp Phe Lys Gly Val Met Asp
740 745 750
Glu Val Ser Glu Asn Asp Gln Glu Gly Leu Ile Glu Leu His Asn Tyr
755 760 765
Cys Thr Ser Val Tyr Glu Glu Gly Asp Ala Arg Ser Ala Leu Ile Thr
770 775 780
Met Leu Gln Ser Ile His Gln Ala Lys Ser Gly Val Asp Ile Val Ser
785 790 795 800
Gly Thr Arg Val Lys Thr His Phe Ala Arg Pro Asn Trp Arg Gln Val
805 810 815
Phe Lys Arg Val Thr Ile Asn His Pro Asp Gln Lys Ile Gly Val Phe
820 825 830
Tyr Cys Gly Pro Gln Gly Leu Val Gly Glu Leu Arg His Leu Ser Gln
835 840 845
Asp Phe Ser His Lys Thr Asp Thr Lys Phe Glu Phe His Lys Glu Asn
850 855 860
Phe
865
<210> 8
<211> 12536
<212> DNA
<213> Rice (Oryza sativa)
<400> 8
tttgtgcttt tggtcgacct gtctgtcacc catatattgc tctcccgctg ctcttcctct 60
ttcctcggct cggctcgtct cctctcccgc tccgacgcgt cgcgagggcg ccttttccca 120
gagattccac atccatccag cccgcggccg gcgagcattt ggcccatcac gcgagctgga 180
gaggttggcc cggcggcggc ggcggtgatg aggggcggcg cctcctcggg accccagcga 240
tggggctcgg cggggacgac accgcggtcg ctgagcacgg gctcgtcgcc gcgcgggtcc 300
gacgaccgga gctccgacga cggggaggag ctggtcgagg tcacgctcga cctgcaggac 360
gacgacacca ttgtgcttcg gagcgtcgag cccgcggcgg cggcggcggc gggggtgggg 420
gcgggggcgg gggcggcgtc ggcgcggggg gagctcacgg gtggcccgtc gtcgtcgtcg 480
tcgcggtcga ggtcgccgtc gatccggagg agctcgtcgc accggctgct gcagttctcg 540
caggagctca aggcggaggc catggcccgg gcgcggcagt tctcgcagga cctgaccaag 600
cggttcggcc gcagccacag ccgcagcgaa gcgcaggcgc cgtcgggcct cgagtccgcg 660
ctcgccgccc gcgccgcgcg gcggcagcgc gcgcagctcg accgcacacg ctccggcgcc 720
cacaaggcgc tccgcggcct ccgcttcatc agcagcaaca aggccaacaa cgcctggatg 780
gaggtgcagg ccaacttcga ccgcctcgcc cgcgacggct acctctcccg ctccgacttc 840
gccgaatgca tcggtatccc tacccaccga tcgcccacca ccaccatttt tccccccacc 900
gaattgcttt ctcacgcagc atccgcgaca ttgtcgtcgt gcagggatga cggaatcgaa 960
ggagttcgcg ctcgagctgt tcgacacgct gagccggcga cgacagatga aggtggacac 1020
gattaacaag gatgaactcc gcgagatctg gcagcagatc accgataaca gcttcgactc 1080
ccgtctccaa atcttcttcg aaatgtaatt agctacccaa tccactatct ctgcaatttt 1140
gccattatta ccagtactac tagataaaca gagtatcaac tctgctaaat tttgtggcga 1200
ttttcgtctg catttttacc agggtggata agaacgcgga cggccggatt acggaggcgg 1260
aggtgaaaga ggtgagcaaa acataatcca cgcccatgtc tatgctgttc ctacgcttgg 1320
tggtccagca gtacgagttc ttctgtgctt tttttctcca ttctttttaa atttgctatt 1380
tcaggatatc aaatcgaata atttagaccg ttttgacaac cgtagttgta tatttggtcg 1440
attgagctgt cctcgccttg cttgggccac accaatattt gttttctccc tccaaaatat 1500
gcacacatct aagtcgcgat tcgcaacctt accggatagg attacttctt aattctgatt 1560
agagggaaga acagttctta attaacacgt aacaatccga taagagagga cattttagat 1620
cagaagcgta ctacgcaggg aaaggagaga ggcatgcagt acaaaggtac gagaaaagaa 1680
gaaaaaatgc ttggcttcca atcggagtcg gtgagcgaaa ccggcgggga aagcatcacg 1740
gcgacaccaa ctcctacctg ccagttttgg gacactcatt ttctttaact tttaggaaaa 1800
gccgaaaagg ggtacccttt ctagaacgtg tgagggcagt ttcggtaatc cggtgggctt 1860
cgtggcttac agaagccctg tgaagcggca gtaggtgagg ggcatttctg tcaaacccac 1920
taagggcaag ttttatagta gaggtggcca ccacatccaa tttcatgcat gacatatata 1980
attaaattaa gaggtgatat gtataataga ttacctctac tacacaatcc ccaatatctc 2040
taatactctc acatgtttat tgaagtttat ccccaatatc cccaatatcc cttgtatgag 2100
aggtgactat ttctctctca tccttgttct ctcctccacc tcactattta gtcccatgtg 2160
gcatcttagg gcttgtgctt ggatgcccat agtacttgcc ctaatgctct ctgatcagct 2220
caaacgatgc gttgacaaga tgagttataa agtagccttt taaaaaaaaa acgattcgct 2280
aattttttgc ctctcactga tgtcactaac agtgctgcgg agcaaattga gttggtaggg 2340
gtttttttgg ctgctctggg ttgctttctt gaggtttgga agatgttgga tcatgttgac 2400
tcagctcgtg tttctccttt cacctacgcg cagattatta tgttgagcgc gtctgccaat 2460
aaactgtcga ggcttaagga gcaagcagaa gagtacgccg ctttgatcat ggaggagctt 2520
gatcctgaag ggctcggcta cattgaggta agctcgatgt tcttaagcag ttaagctggt 2580
gtaaaccctc ataatgcgct tatatctgta atagttgtac tcatgcactg taaacccaca 2640
ctatttactt ccaccaaacc tttaggaata gttgactgaa gctgtctgtt ttgggatggt 2700
agtgctgtag tggggtagta ccagtagagc ctaattgatg acttcgtgca gttctatttt 2760
atctgtcaca ttgctccggt gatgggtgtc ccccaaccgg ccaagcgcgc ttgttatgat 2820
aattaaacaa aaatttgtcc gtcacagcgt caaggccaac tacttgcaaa gggacgcatc 2880
attcataaca aaaagatgat gctggtaccc cacaaacttc ttgcccaccc atcatcattt 2940
atatcgaagt tgttgagcag acgtagacca gtgtagctgt gtagcatcca tttcagtttg 3000
ggaacagttt cgcttcgctc ccctgcctaa ttcaatgcca tccttgctgc ccacagcttg 3060
ttgccgcacc atttacaaag gaatcattta caatgccaga aatgttccat cacggttcca 3120
tggctcttgg tcgtgcattg ctctgccttg cccgggtgca agggtaggga agctgatgta 3180
gtaactaata agcagggtag caagtactag ggatttagga accaggatta acccatgcgc 3240
tcatgtacta gtaggaatgt cgatcaaggg tgtttatctg gaccatgcag ccagtggctt 3300
tggtgattgc catccatgat ccatgttagg cctcatttgt tatggtttta gttcaccagg 3360
tgattcaagt cccacctttt ctagcagtgg gatagctaca acttcagttt ggtggggatt 3420
catatttttg tgcaaccgta ccaattagat cgccgtgtag tgttaacttg tctcgtactt 3480
tttttaccct catagtattt gaagtaaatt aactttacat gttcgataag ttgacgcttc 3540
tttttcaaaa gatagcaaga gataactagt tgacacaatt gtttcatttg agtcaacact 3600
gatttaatat ttgtttgtcc aaaatggtta gttaagcttg agaaagttca tgtacatatt 3660
tcatagggta atttcaggac acatttgcca atattagtaa agcagcaaac tgtaaattcg 3720
agtttctctt aaataaatta ttgaactatg aattatatac atctgaagaa aatgtttgat 3780
atcttcttga tgagaagcgt tgcatctatt cacaaatcac aagtaccatg tactgcatct 3840
ggtatgactg cacaactttt tacatgaaag tcctttcata tataaaaaag gaggtgtttt 3900
acaatgatct ctactagtag tgcaacattt tattttttgc cattgcagca taattctgtt 3960
gttatataat cttgatatta ttatgtattg gatggtgaaa attgatgtgc tgttgttgac 4020
atgctcatgt gtttcttgca aacaatttgt tgagctaatg gaagtgtgag gacgtcccaa 4080
agcctaggtg gtgcaacgct ccgaggcatg tcagcgcgaa atatctggat ggatgggttc 4140
tcaaataaag cccaaataaa tacggtaacc atccaacctc atcgcagacc ccgacatgtc 4200
ttgaagagtg cactacatag gctctaagcc atcggatatg aaatagaaga cacaactgtt 4260
ggaatagcca caccagtcat ctacgtcata tgcccgtcaa ccactcgatg gtggcgacaa 4320
aaaacatacc ccagagactc gatctcaaca gaggcatatt ccccggttat ctcaaccatt 4380
tcaaacccat cctcatgtgg gactagtcgc ccaggaatgc aacatagtct cacataaatc 4440
atctcaagca tgatatccaa ataataattg gttctaagca ataagcataa atagtcttaa 4500
taaggttcta agtagtactt ggcgacaagc cataaatatt ggttcatgcg gtaagcgtgc 4560
tacccaaaag cccataggca aaccgactag ggtaaatccc tagttagaac catcctggaa 4620
atctgcaaca tcacaagctg catcaaactc ctcatccaaa cagtcattac ctgcagcgcg 4680
gtctgagcat aaacaagtaa aaaaaagcaa gaaatcagta cattaatcaa attaatgtat 4740
tggcaagtcg gaaacaatcc tagcatacta catgttggcc atattcaagg ataagctgtg 4800
tataggttaa tttgcataaa tgccaatttt agttcacaac atgtttcgca acggaatttt 4860
ataacaatag tatagagtaa gtaaaacttg taatgtgaat gaataaataa tacacatcta 4920
cccctcaagt catcacatac cacatatcat taatcaattt catcatatca cgaaccatag 4980
gaagttccga taagttacca aaacccggta acccataccc ttcggcctac caagatgcaa 5040
ggctaaactc taaacaactt aataggttga ggccagccca tacttagcac atgtggtttg 5100
tactgttttc attagttggt gacatagagt ggggtcctta atcgacccgg gcgaacgctc 5160
cccctatcgg tgtacaacta ccaccctatg tacactcgcc gcccaagtct aaaaacaagt 5220
tatttccatt ttcagttcac aatactcaca cacttaaatt tctgtccagc aacatcaaaa 5280
taaccatttt cacatataac atttatcaaa acgagtaatt tgcaaggcgg taaccaaata 5340
taagcatata gcagcaatat aagcatagta taatcccaaa gaacacaata attgtattca 5400
aaagcactct atggttacaa ccagcaaggg ttcaatattt caaggtggat tatgcagcaa 5460
ttaggtcata tctaccattc ccacatttat ataatatttt ttttaccaaa attaatacta 5520
gctaacgtat gcatgtttgc aatagaatca tttagcccaa tagaacatag gatcaatgtg 5580
gtcaaaggag gggcaaactt tccttcgtct gcaaactcct gagcctggtc gtcaacaaac 5640
tcaccctctt cttcttcgac gtattcttcc tctatacaaa atacgtgtat acgataaata 5700
caaaaatgca taaaaaccaa aatgcatgaa aatgcatgaa atttatgcag tgagtgtgtg 5760
ctggtctcag gtggtctctg gtgaaggaat ttttattttg tcacttttta tttacagaga 5820
tatgcatttt acaattaaaa aggtttaaaa gggctaagtt ttattaagca acatttttgt 5880
acagaagtga acaaaattcc ttttacaaag ttatagagca tgattttaga aagttaacag 5940
aagtggtttc acaattttta gagctatatt caattcgtta tggatttaac aagttctagg 6000
caacattatg gcaaaacaaa aataaaggaa aagtttgtac agaaagtacc catttttata 6060
tttttgtaaa atatttcaca gctttatgga tctaacaaaa ctggtttcac aatttttgaa 6120
gttaaaatga attttctaca aattttagaa gttctgctca ttctctgctt taaaccaaaa 6180
tagaaatcaa aatttgaaat tgcattccag ccgggtccac aggtcagtga aagaagattt 6240
gcagagaggc cctcggaagt tgggggaatc atcccgcact tcttctgcca cctggacagc 6300
aaactttatt aagagtctct attcttttgt ttatttccat caaggtcctg ctatagtaat 6360
atgagtcatg gcagttttca gattggaccc tagagtcgat caaattcaag aaatgaagtc 6420
cccagctatc tcacatcggg agcagccatg gctgagctcg gtctacggct caccggcggc 6480
gatcagtgga tcgaatcggt tcgagcacaa aagagaaaat gtagagaacg ttcttgcgca 6540
tccgtgagtg gtgctggtga gggaaatggt ggtctgtagc ccatagaaca tgagctacag 6600
cggtggtgtg tctcggtatg cccatgtatg tgcatgcaga ggcttggtta gtgcaaaggg 6660
ttagtgcatg tgctctcata tggtaccagg gtgctcacca agcagagaaa cggaggcagc 6720
gaggtccagg gagcggcgga gacggtggtt gatggccaac ggcggcaaaa ctccggcgtc 6780
gacgtcgccg ggtcgactca aggcgcgaac tgtaacttcg agagtacggg ggtgttagag 6840
atgagccaca gagggtgcat gcgcgaggaa tccggcggaa actcaccgga gcttggtgtt 6900
gcttcggtgg tgaggaacgg cggccggagc ggcgtcggcg gttcgggtgg ccggcggcga 6960
ggacggtgac gcccaccacg tgctcgacag attggtccta gggcaaaagg ggtacgggtg 7020
agctcggcgt gatgcgtagg tcacgttcca taggaggaaa gagagaggga ctcaccgggg 7080
atgcacggcg acgacggcta agtcgccgga gccggggaag atggccgagc tctgggcatt 7140
ctgtgcgtgg ggtgtgtttt cttggacttg gaacgcgatg tggggagcga gctgttgctt 7200
ctggtgcttt ggcttgggaa ataaggaaga gtggagtggg ggagtgagag agagagaggt 7260
ggctggtgca ctcattgtgt tccttgggca tttattgggc atgaggaacg gtggatgctg 7320
tgaggggaga gtgggaggct gtcatgtggg tcccgggggt tgtggggccc actgtcagtg 7380
aaagaaattc gaaaatagcc ttggaggcta agtcaatgag ggttacctgc caaggatctt 7440
tggaggggat tcaaggtgga ttttgagcag caagaaatct ggctagatat cctcttggtc 7500
aggggtgatg tggagagtaa atgtgctgaa gtgggttggg ttagaagtct ctggtttagg 7560
tttgatggag tgatgaacat gtgttgacag tgttggttag cagcagttga cagtgcagtt 7620
agcagctgat tggatttttg gagggagaga agaaagggtt agagagtgat ccagggtatg 7680
ccactcctca gggtgttaga agaaagttag tagaagactt tggctgaaac caaacttcaa 7740
aaagaggttt tgaaataaat tttacagaga gagcaagttt gaatctgcta agcagttttt 7800
tttttcagga ttttggagag attaaagtag atcaacaagt tagcaaacct tactgaaaaa 7860
ctctgaaaat ttgtgggttg atttctgaca tatcaaggta tttttgagaa tttttgtgga 7920
atttttggat gcatataatt accagattaa ttgtttttgt gactctaggc ctatcaagat 7980
gcatgtgatg atgagatgat taagatccaa aaacaattaa aatcactcca caaccacatg 8040
atgcatttaa attaaattta gttctcaggt ttataggctt gggtatgtta caggaaggga 8100
ccaactttca tttttaatag ggagtatcta aaaaactgcc gcaagttttt ttgagtgaaa 8160
aactttcaca tgtaactata gtataatcga agtgtaacta cattgtaact atactataac 8220
tgcattgtaa ctatactgta actatgatat aacttatata aaacttgtat ttaactatgg 8280
tttgattggt tagcaccgga atattacacg tgacatgtgc gcaaatttct ttctagcaat 8340
tttttccctt catgcacaaa tctcgaggca atccgatggc tacaaatccg aaagttttgg 8400
aggcaaaaga acttgtggaa gttttctagc aattccattt taatatcaca gaacactata 8460
tatattaatt taggcggtct tgtgctatgt attcagtatc ctccatgtgt agtacatgta 8520
tagtggccca gtggttgagc ttatggacct tcatagtaca atttctttct ttaggaacca 8580
gttttgagag agtagcttat gttttgttca tagaatatta tcctcaaatc aactaaatgt 8640
gcttatagtt ttgcatcaat gaaatgtgaa tgacatgact tctgaaaaat acactgtttt 8700
tttttttgtt tgtgttacag ctatggcaat tggagacact tctgttgcag aaagatacct 8760
atatgaacta tagtcaggcc cttagttaca caagccaagc actgagccag aatcttgcag 8820
ggctaaggaa gaagagttca atccgcaaaa taagcacctc tttaagctac tatttcgagg 8880
acaactggaa acgtttatgg gtgcttgcat tgtggattgg gataatggct ggactgttca 8940
cctggaaatt catgcagtat cgtaaccgat atgtctttga tgtgatgggc tactgtgtca 9000
caacagcaaa aggagctgct gaaaccctaa agctgaatat ggcaattatc ctcctgccag 9060
tatgccgtaa caccattact tggttgcgaa gtacaagggc tgcacgggca ctaccttttg 9120
atgacaacat caacttccac aaggttagca aatagtctgt cattgcctct gttatcccct 9180
tgatacaatc tagcacagtg atctgtattg aaatcaatga atttagacct tgacccagta 9240
ctctagaatg tagatgctgc atttgagata caagcacaag taatagggtc atgacacaac 9300
tgaaaaattt ataatataag tagatatatt gaacattctt ctgctgacaa actcgaaaaa 9360
gaaactaaca acttgtgttt ttgttgtaac ggcagactat tgcagcagca attgtggttg 9420
gtataatcct ccatgcaggg aaccaccttg tatgcgattt tccacggtta ataaaatcat 9480
cagatgagaa gtatgctcct ttgggccagt attttgggga aataaagcca acatatttta 9540
cattggtcaa aggagtggag ggcatcactg gggtaatcat ggttgtatgc atgataattg 9600
cttttactct agcaacccgg tggttccgcc gtagcttggt taagcttcca aggccatttg 9660
acaaactgac tggcttcaat gccttttggt attctcatca tctgttcatc attgtgtata 9720
tcgcgctcat tgttcatgga gagtgtctat accttattca tgtctggtac agaagaacgg 9780
taagatattt ttgaatttat cttcattcat tggtctaaga taattcgaat ttctaatgtc 9840
ctcatgcttt tatttcaatg cagacatgga tgtatctttc agtgcctgtt tgcttgtatg 9900
taggggagag gattctaagg ttcttcaggt ctggcagtta ttctgtccgg ctattgaagg 9960
tcaatccaaa gacattacaa aattgagcat tgatactttg tgccttgtac taattcagta 10020
actttcttag caggtggcca tatatccagg taatgttttg acactgcaaa tgtccaagcc 10080
tcccacgttc cgttacaaga gtggacaata tatgtttgtt caatgtccag cagtgtctcc 10140
ctttgaatgg tacttggtgc ttttcagctg aaatttaatt gaattatgta cactggataa 10200
cattgctaag atagattact tctaattttc atgtgtagtg catatgtacg aaaggcaaac 10260
tcagggcaat taatctaaca ttaacattta ttgtctcttg taggcatccc ttctcaatta 10320
cttcagcacc tggggatgac tacctcagca ttcatgttcg acaacttggt gattggacac 10380
gagaactcaa gagagtattt gctgcagctt gtgagccccc agcgggtggt aaaagcggcc 10440
ttcttagggc agatgagaca actaagaaaa tgtatgaaca ctccctatgt ttaccacaac 10500
aaaattttgt actttgtgtg cactaacatt tataattttg tccttttggc tatgcagctt 10560
acccaagctt ctgattgatg gaccgtatgg ttctcctgct caggattaca gcaagtatga 10620
tgttttatta cttgttggat taggaattgg tgcgacaccc tttattagca tattaaaaga 10680
tcttctgaat aacatcatca aaatggagga agaggaggta tgttttctgc agttgtcttc 10740
ctagtattgc aagtaaataa aatattactc ttttccttat catgcttatc ttctttgtgt 10800
agtatagtaa ccatttacgt ttttagctgt gccttatgtt ttcggtgtcc tctgtttctc 10860
cgtatttgca ggatgcttct actgatcttt atccaccaat gggtcggaat aagccacatg 10920
ttgatctggg cacacttatg acgattacct caagaccaaa gaagatcttg aagaccacaa 10980
atgcttactt ttactgggtg acacgtgagc aaggctcttt tgattggttc aaaggagtca 11040
tgaatgaaat tgctgacttg gatcaaaggg taaatagacc aattgttttt tttccagtgc 11100
agtttgtttg tcttcagaaa tttgccatgc atttccttgt gaacttgtag ttacggttgc 11160
ctttgattca tgctagaata tcattgagat gcacaactac ctaacaagcg tctatgagga 11220
gggggatgcc aggtcagcac tcatcaccat gctccaagct ctgaaccatg ccaagaatgg 11280
agttgatatt gtctctggga caaaagtaag tattggcagg acgtttaaca tctccacacg 11340
gatgctgtaa agctgttttg tttgatatta agtttttcac ctcactggtt attatcgtaa 11400
agaactcaaa gttaatagaa atcacatttg ccttgtccat ttaattgtca ctgcacttgt 11460
ttttcaggtc cggacacatt ttgcacgacc aaattggaga aaggtccttt ctaaaatttc 11520
ctccaagcat ccatatgcca aaataggtta gtttacatgc ttcaagtcta actaatcttt 11580
atcttgattt cctttggtca ttcatgccta ctacctaact ctgcatatat aacttattag 11640
atgtactgag tactacataa aagaaacgca aaacttccaa tgatatataa taaaaaatgg 11700
gaaaggggaa aacttgaaat tccacgcctt ctacactttc agctctgttg taaatgagca 11760
gatctgtaaa caagttacca cctcgggctg agttactcat caacatttga tctatatagt 11820
taatatagtg atatcgtaga cacattatat atggtttgag tacttatttg tgttgcatac 11880
aggtgtattc tactgtggag ctccagtcct ggcacaagaa ctaagcaaac tttgccatga 11940
attcaacggg aaatgcacaa cgaagttcga attccataag gagcatttct gaaatcaagt 12000
aaatacttga ggggaaacaa ggatagatta tgttatgtgt atagcatttt tgtcttcgta 12060
tattcttcat tataatggac aggagatagc aaggtgagga agcaagcata tagttagccc 12120
aacagttctt gctaccaatc aataaaagga gcaacaacaa gagtgatttg ggataatcat 12180
ataaatttgt gcgatgtcca tcatggcttt tgcagcatgt cttatgcagt catgaatgta 12240
cagagctcac ttgaagacct tgagcttctt ctgattttag ttgagattat aagtaggatg 12300
gtatagcaca taggaaggtc acaaggctaa ttaactgtat attattcatg cagctgagtg 12360
tctggctaag gccagaagca cgttttactt ttgtatttat acataacaga aaacgagaaa 12420
aaaaaagtga aaagggaaag gtatactcga attgagtgtt tgtaatctgt aatttataca 12480
gtgcattggc agttttattg gctccaggtt gggcgcaccg cgcaccaacc acatca 12536
<210> 9
<211> 6629
<212> DNA
<213> Rice (Oryza sativa)
<400> 9
cctcctgctg ccgccactac tactaccatt gccaagccag gccaggccag accggccatc 60
tgcattgcat ttgctctctc tctctctctc tctctctcgg caccacggac actcgtacag 120
ctgccgcctg ccggagggtt ggtggtgtgt ttcaggttcc agaaaaatcc tccagctttt 180
tgtggtcgct tgaggagctg agctgtgtga gccttgcaag gtttgcatca acaagcttgg 240
gggtttttcc tatcttgttg ttctgaggga attcaagaaa tgctccaaat ggtctgaatt 300
cgtaggttta tttgggctgg aatctctcag agggtttaag gtaccgttcc tttcgtcact 360
tcccccaaag ttttagcctg caaagtttgt tcttcttctt cttcttcttc ttcttcttct 420
tcttcttctt ttttccctct tgctctgtgt ctgattcttc ctttcccttt tcgttttgtt 480
tctccacttg tgaataagct tttgtttttt ttacattcag tagtacccac tcactagtag 540
aaatgttcct ctgtttcttc tccactactg ttggacatgt ttgcttgctg tttgtgggtt 600
gtggcaccaa gaaacggatg gttgattgag ggggtgggtg ttggtgtgtt cctgcatttt 660
cttggaagca gcagcttcca gatctgagat ggcagaggta ttttgcggct catggtttga 720
gttccatttc gagtgaattc gttcattcct tccttcagtt tcttggttta tttttgaggg 780
gtagtttctt ggtttatctt ggggcagttt taaagttttc ccctctttta ttagctaatg 840
ctgctgaagc tgtacatccc tggaggctat cttctccata tttaatggat tggtagtatc 900
ttagattcct agtttattgg attttctctc tcccgaattt tgggttttgg aatagatgtt 960
ctggatctca tagacttcaa gagaggcagt tctgctattt aaattgctat ttctttcttc 1020
agttatatat ttttttctgt acctagactg cagataattt tggtctgagt gtctcttaaa 1080
aaaaaggaga taattttggt ctgaatgaac agtgaagtgt tttatttcac tgatttttgt 1140
ccgtatcact atattagtag ttattttcat ttttgcccag acttcacctt tttctttttt 1200
gttgttgtgc taaaagacca aattatcact ttcaatcact gaagttcatc tttccttggt 1260
tgctaactaa attatccgtt gatcagagga aaaaggaaag aggagaaatt gtaaggacaa 1320
gtagagaaga acatggctga cctggaagca ggcatggttg ctgctgccac agaccagggc 1380
aattcaacaa ggtcacaaga tgacgcagcc acactgatcc cgaacagtgg caatctgggc 1440
tcgagcaaca ggagcaccaa gacggccagg ttcaaggacg acgacgagct ggtcgagatc 1500
accctcgacg tgcagcgcga ttcggtggca atccaagaag tgagaggggt ggatgagggt 1560
ggctccgggc acggtaccgg gttcgacggc ctgccactgg tgtcaccctc gtcgaagagc 1620
ggaaagctga cgtcaaagct caggcaggtg accaatgggc tcaagatgaa gagctccagc 1680
aggaaggcgc catccccgca ggcgcagcag tctgcgaaga gggtgaggaa gaggctggac 1740
aggaccaaga gcagcgccgc cgtggcgctc aaaggattgc agtttgtgac tgcaaaggtt 1800
ggcaatgacg gctgggccgc ggtggagaag cggttcaatc agctgcaggt ggatggtgtg 1860
ctgctccgtt caagatttgg gaaatgcatt ggtaaatttt ttttttcaga agttgagctg 1920
aatttgaatt gttcatacat ctgttaggag aaatggtgtt tattccatta tttggattga 1980
ttgtgcagga atggatgggt ccgacgagtt tgcggtgcaa atgttcgatt ctctggcgag 2040
gaagagaggg atagtgaagc aggtgctcac taaggacgag ctcaaagatt tctatgagca 2100
attgactgat caggggtttg acaatcgtct tcggacattc tttgacatgt tagtactctc 2160
tgaaaacact tctagtgttg tcatgtttcc tttctgtact attataggca taaatatatt 2220
tcatgtggtt aatttgccaa atcaaatttc caccacagag tagctcaata tcttgcatag 2280
aattcaagca agtgagcgac aagcttttca tgcttctgtt ttgctaactg ctaagctatt 2340
cattgtagca cttaacaatg ttcattcttg ttgtgcaggg ttgacaagaa cgctgatgga 2400
aggctcacag cagaagaggt taaggaggta agtcagaaaa cacaaaaccg aaaaaaaata 2460
taacaatttc tatatgttct gtgtttaaat ggtattaaat ggatgattat gcttttgcag 2520
attattgccc ttagtgcatc agcaaacaaa ctttccaaga tcaaggagcg agctgatgag 2580
tacacagcac tcattatgga agagcttgac cctacaaact tgggatacat cgaggtttgt 2640
ccaattccaa gcatcaaagt aatattgtgc acaacctatg acctaaccgc attaataatt 2700
ttgacagatg gaggacttgg aagcactatt gcttcagtca ccatctgaag ctgctgcaag 2760
atcaacaacg acgcacagct ccaaacttag caaagctctt agcatgaagc ttgcgtctaa 2820
caaagaaatg agcccagttc gtcattactg gcagcagttc atgtacttcc ttgaagagaa 2880
ttggaagcgc agttgggtta tgactctgtg gatctcaatc tgcattgccc ttttcatttg 2940
gaagttcatt cagtaccgta atcgagccgt attcggcatc atgggttatt gtgtgaccac 3000
tgcaaagggt gctgcagaga ccctcaaatt caacatggct ttggtcctac ttcctgtctg 3060
cagaaataca atcacatgga ttcggtcaaa gacacaggtt ggagctgttg tacccttcaa 3120
cgacaatata aactttcata aggtaaaatt atgttgattc aatcaatatt gaactgatgg 3180
attttaccgt gttgtgaata tcatccagtc cattttgcgt agtgctttcc ataatcaagt 3240
aaagtcaata tttttttaag ataatggaag ctttattgaa ctcagccaat gacatcaaga 3300
tgatagaact gtactaagaa cactctcgac ctctgcataa ctaagatgca cacagtcaaa 3360
acacaccaac actagaattt tttttaaaga aaaaactaaa caaaagatag gagggattaa 3420
gggccatcaa tccatagact agatcgccac ccacgctcct aagtaaaaaa accccctcgc 3480
tacctgctcc aattgtgaca tgccacagca ataaaattat gcagacccga cttccgaaga 3540
atatcccaag aacggagcca atgagtaatc aaagagataa cctggaaagg agagtcaatc 3600
tttatgttat caaaaaccac atcattactg cctagccaca atgaccagca tatagcagcc 3660
gctcctaata ggactaaagg tctcaaatat ttagataaac acgaaagcaa actcgcaaac 3720
atatgtgaaa cactatgggg gcagacatag gtttgaaact atttggatta aagaccaaat 3780
agaatgagca agacgacatt ggaagagtaa atgtttaatc atctcttctt tatgacaaaa 3840
gcagcatatc ttgctacctt gctaattaca cttggcaaga ttatcctttg ttagtactac 3900
acgtctacac cacggcgtaa gcaccaaaga aagatcttga cttttagagg accctttaaa 3960
ttctaaagtc gtttatttag taacatatga gtaacacatt aaacctgttc atctggtaca 4020
ttttttcaat aatggaaatt agcatatcct ctacatcaaa aaatgtgtcc ggccatatag 4080
ttgagaacta ggcaaaaaaa tatgagttgt gagactaata tcgactttac ataatctatg 4140
atttactact gtgcaggtca tagccgcagg tgttgcagtt ggtgttgctt tgcatgcagg 4200
tgctcatctg acatgtgatt ttccccggct gctccatgcg agtgatgcac aatatgaact 4260
aatgaagccc ttctttgggg agaagaggcc accaaattac tggtggtttg taaagggaac 4320
tgaaggctgg acaggtgtgg tcatggtggt gctcatggca atagcattta cattagccca 4380
accatggttc cgacgtaaca agctcaagga ctccaatccc ctcaaaaaaa tgactggctt 4440
caatgccttc tggtttaccc accacctgtt tgtcattgtg tacactttgc tctttgtcca 4500
tggaacgtgc ttgtatctaa gcaggaaatg gtacaagaag acggtaaaag tctataccct 4560
gaacacacaa gaaatcccaa tgatcatagt tggtaccttc tttgtgagga gatcataact 4620
gatacttatg gttcattttt atcattttca gacatggatg tacctcgctg ttcctgttgt 4680
cctgtatgta agtgagcgta ttcttcggtt gtttaggagc catgatgcag ttgggattca 4740
gaaggtacca tcaatcaaat ctctttcctc aacttacata ttactactat ccatcgccat 4800
ccacatcttt ccttttttta tgttgtattt tatttaaagg gtttgaactg aaactagcct 4860
tggaatgtct ggaagctctg aatccgtctt ttttttttgg gtttaacatc tctgctttca 4920
acaggttgca gtgtatcccg ggaatgtatt ggctctttat atgtcgaagc cacctggttt 4980
cagataccgt agtgggcagt acatcttcat aaaatgcact gctgtgtctc catatgaatg 5040
gtgctggtct tacacatttt atggaaagaa aatgtattat tttgaaataa agtccgcaga 5100
taactaaaag agcaatactt tgtctgttac aggcatccat tttccataac atcagcacct 5160
ggagatgatt atcttagtgt tcatattcgc acaaggggtg attggacttc acggcttaga 5220
actgttttct ctgaggtaat tgaaccaact gccttttatt ttttttgctt tgttctatag 5280
ataaactcct aagaaacatg acttacgaac tttgtaagca cctgaattgc attgtctttc 5340
atttgtcata tccaatttat ctgcttgatg gattcaatcg acaacaagta tgataacaaa 5400
atctttgaac caggcatgcc gaccccccac tgagggagaa agtggactac ttagagctga 5460
cctttccaag ggaataacgg acgaaaaagc aaggtgcaaa ggacttcatt tgatttgttt 5520
gcgaaaagca gaaatgcatt atatatcttg cttcatctca tggtaggact ttccgttatc 5580
taaagaaaaa tcttccgtct aacgataatt ctgctttaca tgcactagat tcccaaaact 5640
tttggtcgat ggaccgtatg gtgcaccggc acaagattac cgtgaatacg atgtgctact 5700
tctcatcggg ctgggcatcg gagccacccc tttgattagc attgtgaagg acgtgcttaa 5760
ccacattcaa ggtgagggat cagttggaac cacggagccg gagagcagca gcaaggcgaa 5820
gaagaaacct ttcatgacga agagagccta cttctactgg gtgacgagag aggagggctc 5880
gtttgagtgg ttcagaggcg tcatgaacga ggtgtctgag aaggacaagg atggagtcat 5940
tgagctccat aaccactgct caagcgtgta ccaggaaggc gatgctcgtt ctgctctcat 6000
tgtcatgctc caagaacttc agcatgcgaa gaagggcgtc gatatcttgt cgggaactag 6060
tgtgaagacc catttcgcac gacctaattg gcgaagcgtc ttcaagaagg ttgcggtcag 6120
ccatgagaac cagcgcgtcg gtatgttctt cttcctgtcc tttcaaatcc agtagtagga 6180
atgtccatga tccattgcat attaaccctg tatatttctt caggtgtgtt ctactgtggt 6240
gagcctgtgc tggttcccca actaaggcag ttgtcagcag atttcaccca caagacaaac 6300
acaagatttg atttccacaa ggagaacttc taatggtaca aattgagaaa tacccgtgta 6360
tggttttgta tgtagttctt tatcatgtga attatatggt ttctaatata tataaagttg 6420
gacaaaataa atgaaatgat ggaagctatt ttgtttttta agatgtcaaa agtctgcaat 6480
atctttttac aagagtgctg tctattcatg tatacaccta gtggaagaag ctgtgcttca 6540
tgttgtagct tacatagatg aagggaagtt ctctttgttg tgaccaaagg atgcctagaa 6600
tcatgtaaca ttgtgatgtt ccctttcat 6629
<210> 10
<211> 4543
<212> DNA
<213> Rice (Oryza sativa)
<400> 10
ttacccgcca tatctgtctc cctctcccct tctcatctcc cgagaagtag tagtagtagt 60
cgtctagtag tagtagccta ccaccacctc cctcggcgag cgggtcccac cggccaccgt 120
ccgtactccg gtgagccggc attgcgtgtt ccgggatggc gtcgccgtac gaccaccagt 180
cgccgcatgc gcagcacccg tcggggttgc cgaggccgcc gggggcgggg gcgggtgcgg 240
cggcgggcgg gttcgcgcgg gggctgatga agcagccgtc gcggctggcg tccggggtga 300
ggcagttcgc gtcgagggtg tcgatgaagg tgccggaggg ggtggggggg atgcggcccg 360
gtggcgggag gatgacgcgg atgcagtcca gcgcgcaggt ggggctccgg gggctccgct 420
tcctcgacaa gacgtccggc gggaaggagg ggtggaagtc cgtcgagcgc cgcttcgacg 480
agatgaaccg caacggccgc ctccccaagg agagcttcgg caagtgcatc ggtgagtccc 540
cggcccgcag cttccatcga tggtgcgatc cagaaacaga tagccgtaaa ttcagttcca 600
aaagggcgat tagttgttgc taacaagaac acagcagaaa tatctctgat tgaaggaata 660
ttgtgttggc gccatctttc ttgttttctg tcaatcattt ttatgctccg caacagttgt 720
gtgatgatgc cgtgaactgt tcatctttgc ccaaagagtt ggcagggaca gctctgccta 780
actgagatcg gctctttgct tctcaactaa tcccctcgaa ttaatgcttt tgctttgcga 840
aatggtccat tattaagcag taaatcggta cagcaaaaga aacgagtact ctgtacttct 900
cttttgttat tgcacatgct tacggagaaa atggagttat agcgaccggt tcatgctgga 960
ggcagttagg cgatcgatgg aataataatc gtgtagcgct aagcgaatca tttctctttt 1020
tagatagttt ggatgtctaa caatgcccat gattcatgat cttttaattg aactaagaaa 1080
aattaatcca tggtggatct gcttggcatc aaaaggcatg ggggactcca aggagttcgc 1140
cggcgagctg ttcgtggcgc tggcgcggcg gaggaacctg gagccggagg acggcatcac 1200
caaggagcag ctcaaggagt tctgggagga gatgaccgac cagaacttcg actcgcggct 1260
tcgcattttc tttgacatgt aatggttcac cgtcccagtt ataatttcca agatgaacac 1320
gataaatcga tcgccaactg acgaaatgga tttttttttt ccttccccct ctctctgatg 1380
catccaggtg cgacaagaat ggcgatggga tgctcacgga agatgaggtc aaggaggtga 1440
ggacgaaaga attcttctgg attggatctc atctgccatt ctggaacatg gagagagagg 1500
attaaatatc gttttcttgt ttggctggaa tggatttgca ggttattata ctgagtgcgt 1560
cggcgaacaa gctggcgaag ctgaagggac acgcggcgac gtacgcgtcg ctgatcatgg 1620
aggagctgga cccggacgac cgcgggtaca tcgagatctg gcagctggag acgctgctgc 1680
gcggcatggt gagcgcgcag gcggcgccgg agaagatgaa gcggacgacg tcgagcctcg 1740
cgaggacgat gatcccgtcg cggtaccgga gcccgctgaa gcggcacgtg tccaggacgg 1800
tggacttcgt gcacgagaac tggaagcgga tctggctcgt cgcgctgtgg ctcgccgtca 1860
acgtcggcct cttcgcctac aagttcgagc agtacgagcg gcgcgccgcg ttccaggtga 1920
tgggccactg cgtgtgcgtg gccaagggcg ccgccgaggt gctcaagctc aacatggcgc 1980
tcatcctcct ccccgtgtgc cggaacacgc tcaccacgct caggtccacg gcgctcagcc 2040
acgtcatccc cttcgacgac aacatcaact tccacaaggt gatcgcggcg accatcgccg 2100
ccgccaccgc cgtccacacg ctggcgcacg tcacctgcga cttcccgagg ctgatcaact 2160
gccccagcga caagttcatg gcgacgctgg ggccgaactt cgggtacagg cagccgacgt 2220
acgccgacct gctggagagc gcccccggcg tcaccggcat cctcatgatc atcatcatgt 2280
ccttctcctt cacgctggcc acgcactcct tccgccggag cgtcgtcaag ctgccgtcgc 2340
cgctgcacca cctcgccggc ttcaacgcct tctggtacgc gcaccacctc ctggtgctcg 2400
cctacgtcct cctcgtcgtg cactcctact tcatattcct caccagggag tggtacaaga 2460
aaacggtaaa attctcatca ggcgctcgat cttcctgtga ctgcaatgaa attaagtgac 2520
atcatctcaa aatgtcaatc ttgttcctgc agacatggat gtacctgata gtcccagtgc 2580
tcttctatgc atgcgagaga acgatcagaa aagttcgaga gaacaactac cgcgtgagca 2640
tcgtcaaggt aagcagctga ctcatgtaac tgggatccat tctttcttag ctgtttgcct 2700
gttactcata aaattggtga tgtgggtgtg gcacatgcag gcagcgattt acccaggaaa 2760
tgtgctctct cttcacatga agaagccgcc gggtttcaag tacaagagcg ggatgtacct 2820
gtttgtgaag tgccctgatg tctctccttt cgaatggtaa ccaattcacc cttgtcgcat 2880
gaatgcatgt ccaaaatgtg gtttatctga gactatttct aactgttttt cctgcctttg 2940
caggcatccc ttctccatca cttctgcacc tggagatgac tacctgagtg tgcatatccg 3000
tacactaggt gactggacga ctgaactcag aaacctgttt gggaaggtca gttgaggcag 3060
cacagctgca aagagttgca agaacaatta gtttccctcg ttaaacaatt ctaggagaat 3120
aatgcagatt gccaaaagat ggagaactaa atcttagtat tcatgtaggc ttgcgaggca 3180
caggttactt ctaagaaggc taccctttca agacttgaaa ctacagttgt ggcggacgct 3240
cagacagagg atactaggtg actagagaag ctcttctatt tcacctacca aatgcatttg 3300
gtctacaatc attttctaac cctggttatc ttcacaatgt tgcttcaggt ttcctaaggt 3360
ccttattgat gggccctatg gtgcaccggc gcaaaactac aagaagtatg acattctttt 3420
gcttattggt cttggaattg gtgctactcc tttcatcagc attctgaagg atctgttgaa 3480
caacattaaa tccaacgaag taaaattctt ccctgataaa tagtgtttcc ttatttccta 3540
caatgttgta taactggagg aaatagataa ctaaaatgag ttgatggcaa caggaggtgg 3600
aaagcataca tggttctgag ataggcagct tcaagaacaa tgggccagga agagcttact 3660
tctactgggt gaccagagag caagggtcct tcgagtggtt taaaggagtc atgaacgatg 3720
tcgctgaaag tgatcacaat gtactgtctc actctcaatt cttcgctgta ttttcaaatt 3780
tccatagttc cttcagtcat agatagaaca taaactaata tatgtgggaa ttgcagaata 3840
ttatagagat gcacaattac ctgaccagcg tgtatgaaga aggcgacgca aggtcagctt 3900
tgattgccat ggttcagtca cttcaacatg ccaaaaatgg tgtggatatc gtctccggca 3960
gcagggtatt cgacatcttc cccctcttct atctgaaata cttatttatt tccagtgtat 4020
tcctcttatt tctgattgat ctgttgcaga ttcgcacaca ttttgcgagg cctaactgga 4080
gaaaggtgtt ctctgacttg gcgaatgccc acaaaaactc acgcataggt gagcctcttt 4140
tttcagcgaa catcgtcgat gcaacaattt tgagctttgc agtaacggtt gttaacaaat 4200
ccataaatat gcaggtgttt tctattgtgg atcccctaca ctcacgaaac aactcaagga 4260
tctttcaaaa gaattcagcc agacaaccac aactagattc cacttccaca aggaaaactt 4320
ttaagaccgt accaaaggac gtctaaacag actgcatata cttgtatagg aaagaaatac 4380
gatagcattg ggatagcaaa tatagtctta caagttttgc tctacgatgg attgtacaaa 4440
atatatgttg aaagctagtg tcaccatcgt gcatagattc tggaatgttt acagatatat 4500
gtattggaac agtgggaatg catgttagaa aaattgagtt cca 4543
<210> 11
<211> 2748
<212> DNA
<213> tomato (Lycopersicon esculentum)
<400> 11
atggtgagtg cttcagcaaa taagctatcc aaattgaagg aaaatgcagg agagtacgct 60
tgtttgataa tggaggagtt agatccagaa aatgttggtt acattgaggt atgttcctct 120
gtcttgctaa gtgtgttcaa aactagcaac actaatatgt tccttttcct tcagatatgg 180
cagttggaaa cacttcttct acaaagggac aattacatga gccacagtac gcctttaagc 240
acaaccactg tcgactggag tccaaacata ggaaccagca atgccaacaa catagtaaag 300
aaagcaagtc gtaccgtcaa atgccttgtc ttagaaaact ggcatagagg cttgattatc 360
ttgctgtggt tgcttgctat gattggactt ttcatctgga aattcatgca gtataggaaa 420
atggaagcat ttcaagtaat gggttactgt ttggctacag ctaaaggagc tgctgagaca 480
ctaaagttta acatggcact aatccttcta ccagtttgtc gaaacatgtt aactaggtta 540
cgttcaacaa gagccaggat acttattcca tttgatgaca acatcaattt tcataaggta 600
aacattccat acctcaattt atcactagta tcatgtattc cttaactaca cattgacttg 660
cagattattg cacatgccat agctgttgcc ataatacttc atgcagccaa ccatttagcg 720
tgtgactttc cccatttggt taactcatcg ccagaaaaat ttgcactcat agcttctgat 780
tttgacaagt tgaagccaag ctacataagt cttttgactg gtgttgaggg catcaccggt 840
atttctatgg taattttgat gactatagcc tttatactgg caacacgacg cttcaggagg 900
agcgtaccca agttgccgac ccctctgaac cgattaacag gatttaatgc attttggtat 960
tctcatcacc ttttggcatt tgtctatata ttgctactac tacatggaac gttcttgttc 1020
tttgtccaca aatggtatca gaagacggta aggactatga atataattag tacaaaaaaa 1080
gcaagcatta aattgaaaaa acatttatcc aagattatat gctaacaatg tatcaccaat 1140
aactattgca gacgtggatg tatatctcca ttccgttaat cctgtacatt gcagagagga 1200
ctttgagaac atggcgatca gaagactatg cagttaagat cttaaaggta tgtaagggca 1260
tgaaactgat acatgtggct aaatagatgg cattttcatc aattgcactt atattctcgg 1320
tacagtagaa gaaactatct cctaaaatga aactgtaaaa ccacttaaga atataaggag 1380
aggaagatca agaacaagat aggggaaaac gaataaagaa ttaatttttg gaccttacag 1440
gtttctgtac ttccaggaga tgtcttgagc ttgatcatgt caaaaccagc tggcttcaaa 1500
tacaagagcg ggcagtatat attcctgcag tgcccaacaa tatcctcatt tgaatggtag 1560
aaattgttat ttcacataca agccgattat gttccctaca ggcattgaac atatatttca 1620
atatttctcc aggcatccat tttctataac atcagcacca ggagatgact atatcagtgt 1680
ttatatccgg atcgtaggtg actggacaaa agaacttaag agggtattca cagagattcc 1740
agcatgttta gttggtcgag caaagtttga agaacaagaa aatgttgatc aaagagggta 1800
actttactat ttctgtccag tgatcaaacc tacattgtga tttcctttac aagctctaaa 1860
tatgctatcg accatgcagt ttacctcgat tgctagttga tggaccatat ggagctccag 1920
cacaggacta tcaaaattat gatgtcttac ttcttgtagg acttggtatt ggagctacac 1980
cttttataag tatcctaaag gatctactga acaatacaag agcagatgaa aatgtggtaa 2040
aatcttactt catcataatt ttaaagcaac aacgttgtaa ttatgctcca agtaaatatt 2100
tttcggccat gcatgattct gtttcaggat tcgaatactg agaccagcgc atcagatgat 2160
agctggacaa gttttggttc ttcaagctca gcatcaagtg taaaaaagaa atcacaaagg 2220
gcaagaagtg cacattttta ttgggttacc agagaacctg gatccttaga gtggttcaaa 2280
ggagtgatga atgaagttgc agagatggat cacaaagtag tgtacacata cttctcgcta 2340
catgtcctta atttgaattc taagttggtc gatttctgtt ttaataatat tgccactcaa 2400
ctcagttatg ttcctgtatt ctggtgatgg aacagggtca gatagagatg cataattatc 2460
taactagtgt atatgaagaa ggtgatgcca gatcaactct tatcaccatg ctccaggcac 2520
ttaatcatgc aaaacatggt gttgacatct tgtctggcac taaggtatga tccatcacat 2580
aaaccttctc aaagtgaaat atttttaatt ctactgacat tgaaactaat tcttctgcag 2640
gtgaggacac attttgcaag gcccaagtgg actgaagtgt tcaagagaat agctttgaaa 2700
catccctatt ccacagtagg taaagaattt ctacaatctc aagtatga 2748
<210> 12
<211> 6105
<212> DNA
<213> tomato (Lycopersicon esculentum)
<400> 12
atgaatgaag gtagtgaaag aggagaagag gaagcaccgc ccaatggatt tctggctcgt 60
agtgcatcgg cggcctccaa actccgccgg aaattctcgt ggatccgatc gccgtcggtg 120
atgtcacgga catcggcagc agcatcggaa gtgtcggatg ataattatca gcttcaccat 180
acatcaaaca ccttatctgc acgagaggaa atgaaatcga aattgaaact agtaaggagt 240
aaatcaacgg ctcaacgtgc gcttggtgga ttgagattta ttagcaaaac cactggggaa 300
tctgacacaa atgtgctgtg gaaaaaagtg gaggcgcggt ttgatgcttt agccaaagac 360
ggattacttg ctagagaaga ttttggtgaa tgcattggta cattcaaagt tctcaattca 420
tgtaaaacca catgaatgcc atctattttt actagtaata aaatcatgca tgaaattagt 480
tttaactgag atgcaataat actttatatt gaacgggtgc atgtgcagga atggaggatt 540
cgaaggaatt tgcagttggg gttttcgacg cattgatacg gcggcggcgt caaaaagcag 600
caaagataac caaaattgag cttcatgatt tttggttaca gatttctgac caaagttttg 660
atgctaggct tcagattttc tttgacatgt gggtttctct ttttcttttt gtccactttg 720
ttcgaaagca tgcattatta ctaatctcaa ttctcaacac ggaaaagcaa ctcttttttg 780
tcctatatct aaaataagaa ttgaagttac aaacgtacac cataaagaca tatcagtgtg 840
cttaaactat tataccatgt taatcagtta tgattggtcc acttctttgt tttacctaaa 900
ataaaataaa aaaatacatt ctgctgaaat tcagctcctc ctcctatatg attttggagt 960
gggctaaact agaattttga cctccttaca gattacaaca catcaaatcc aatatatttt 1020
gattttttag atcttaaatc gctaatcata tattgaaaaa taaaaaaaat actcatatta 1080
ctctatataa gttgttagta ttttatatat atattcgtct tactatttta cttgataatg 1140
atattacatg tagggcggat agcaatggag atggaaaaat cacgagagat gaagttcaag 1200
aggtaagatt atcgtgggtt aactactaaa acaataaaac ttagcattta aagtcaaacc 1260
atattctatt agtgcaaaat ccattagggg catcttcaat aattcgaaaa agcattagtt 1320
atgtgtttag ttattaataa taatatggaa cagaataaaa tacgtaaatg gcggaggaat 1380
attttattta atagtaataa taataataat aatatatagt tttccctcaa agctttgtta 1440
tggtatttat attttgttca tccaacagct aatcatgctg agtgcttcgg caaataagtt 1500
gtccaagttg aaggaacgtg cagccgagta tgcttcttta attatggagg aattagaccc 1560
tgaatgtctt ggttacattg aggtaacatt atcttctctt ttacttagtg tctaacaaac 1620
atttttatgt ataagtatct tcttaaacca caatttataa aataaaaatg aatatctgat 1680
tattgacaat tccaagattt gattaattaa tacgtatttc tgttagtgtt agtaggtgtc 1740
ttgtctatac cacgacttgt acatatccgg acccacaaac ttcgtttttc ttttgaataa 1800
gtgtttagca cgaacttctt ttagtcgacc acgtctaagt caaaacatag ggaatcctcg 1860
cactgtcttt ggactttggg ggaccacaag aacgttgttg aagaaaaaaa attctctaaa 1920
tattatctta atacatagat aattcctctt aattattcgt aaaaggaaat ctaattatat 1980
tttataacta atgaaatatc atgtcatgtt tttttaaaaa gaaaaaaaat cgcaaacttg 2040
taatatttgt caaagtcatt tcaatcgtgt ccgctaagaa gtacttttat tggtttggca 2100
aaatgacttt ttgatatatt atctttttct ttacagttat ggcagttgga aacgcttctt 2160
ctgcaaaggg acaattacat gacctacagc agacccttaa gcacaacaag tgttggatgg 2220
ggtcaaaact taggaactct taataagacc aagaacctag taaagagagc aagttatgca 2280
tttaaatgcc ttgtattaga taactggcaa agaggctgga ttcttttgct atgggtgatg 2340
gttatggctg tacttttcac ctggaaattc ttgcagtata ggcaaagagc agcatttcaa 2400
gtcatgggtt actgcttggc aactgctaaa ggagctgcag agactctcaa gctcaacatg 2460
gcactaattc ttctcccagt ttgtcgaaac attttaactt ggttacggtc tactagggcc 2520
aagctcctcc ttccttttga tgataatatc aattttcaca aggtaaaatg cacccaaaca 2580
gagtatattg ttcaacatcc aagaattttc ttaacgatgt tgtttcaact gcagattatt 2640
gcatatgcta ttggagttgg aatcttgctt cacgcaggga accatttagc ctgtgatttt 2700
cctcgtctca ttaactcatc tcctgaaaag tttgcactga tagcttctga ttttgacaac 2760
gtgaagccca cttacaaaag tctattgact ggtattgaag gcgtcactgg tattgctatg 2820
gtgattttga tggcaattgt cttcacacta gcaacacgca ccttcaggag aaatgtattg 2880
aagctaccac ctcctttcag tcgattaaca ggcttcaatg cattttggta ctcccatcac 2940
cttctagcag tggtctatgt actactactg gtacatggaa catttttatt cttggttcac 3000
caatggtggc aaaaaacagt aaggccatag ataaaacacc aaatttgctt tatataaact 3060
aaacatgggg tgtgctgaca atttatttcc catattgcag acatggatgt acatttccat 3120
gccgttgctc ctctatgtag cagagagaag tttgagaaca tgccgatcag aacactatgc 3180
agcaaaaatt ttgaaggtaa cttgctttat ctatcaactt ttccatctat acagaaatta 3240
gactcctttt ccgcatacca ataagctgta atcaacacct gcttctagcc tccctctaca 3300
ccccttaata attcaactct ccaacgaaat ctcacaacac cacaaaccat ttattcaatc 3360
agttacttcc ctaagcagca gagtttctct tattccatgg caaacgtcca ccgtgtaaca 3420
tcgtaaacat gaccatcgag caccaacata aatcaatcaa atactggcac tccaaccacc 3480
agcgccccaa caattttcaa aaccttccaa tatagaacta agtcaagtgt gaaaatttac 3540
cgttagcaaa ctcaaagtcg agagataaga gggggggaaa gggtagcctg gtgcactaag 3600
ctaccactat gccagggtcc tgggaagtgc cggaccacaa gggtctactg tacgtatccc 3660
taccttgcag ttctgcaaga agctgtttcc acagctcaaa tttgtgaact cctggtcacg 3720
tggaggcaac tttactagtt ctgcaaggct ccccttgtta taaataaagt cattcactaa 3780
tgatagtctt ttctctaagt atttaatagc attcctaaat tactagagat gatataagca 3840
tctggttcct acagcctcca cccacaagac agtagtaaag aaacaaataa aacatattga 3900
gataaacatg gtagcaggga gagaaggaaa ggaacaaaac acgaaaccaa tgaagatggt 3960
tttttctttg atccttacag gtttctgtac ttccaggaga tgtatttagc cttaccatgt 4020
caaagcctaa tagtttcaaa tacaagagtg ggcaatacat attcctgcag tgcccaacaa 4080
tctcctcatt tgaatggtaa gtgcagtatt tctggattta actcaatcat gcctcaacca 4140
acagatattt aacatatatc ttgatgcttc tccaggcatc cattttctat aacatcagcc 4200
ccaggagatg actacctcag tgttcacatt cgcatggtgg gtgattggac caatgaactt 4260
aagcgggtat tcacagagga tgatagttca gcatgtgaaa tagggcgggc taagtttaga 4320
gaacgtggga atgttgatca aagagggtaa cttcctttgt gtgatttttt aacagaaaca 4380
tatcaagatt tccttattga gaagtctaaa gggcttgtaa tgacgcagtt tacctcgatt 4440
gcttgttgat ggaccatatg gtgccccagc acaggactat caaaattatg atgtcttgct 4500
cctcgtggga ctaggtattg gagctacgcc ttttataagt atcctaaaag atctattgaa 4560
caattcaaga tcagaagaac tggtacaaat cttacttcaa gttaatttgg aactaatcag 4620
gtacaatatt aaaagcccca acttacagtc tctttgcctg tgattctacc ttaggattca 4680
actaccgaaa ccagcgcttc ggatgacagc tggacaagtc ttgcctcttc aagcatggca 4740
tcaactggaa aaaaaaaatc actcaggaca aaaagtgcac acttttattg ggttaccaga 4800
gaaccaggat cctttgagtg gtttaaaggg gtgatgaatg aaatggccga aatagatcac 4860
aaagtaatgt acagagattt gttacaggat atctttaagt gccccccccc ccccctcttt 4920
catcttaatt cagctatgat atattagtaa ttgactcacc tatatctttt ctgatgattt 4980
aaatgaaaca gggtctgata gagatgcaca attatcttac aagtgtttat gaagagggtg 5040
atgccaggtc aactctcatc accatggtcc aggcactcaa ccatgcaaaa cacggtgttg 5100
acatcctgtc tggcactcag gtattataat ccatcaatat tctcaaccaa gccttcttga 5160
agagaaatgg aaaagaaata taatgtagta aggaatttta gcttagctca acgagcgcca 5220
tgttctagct aaaaaaatgt tttattattc aaaagctact taatttcatg aaaagttttc 5280
aatcacaaca cagattagag agaagcaaac tagaggagaa atatactcca cccccaggac 5340
taattaaact aattctactg caggtaagga cacattttgc aaggcccaac tggaaagaag 5400
tattcaacaa aattgcttca aagcatccat attccacagt aggtaagaaa tttctacaac 5460
ctaaactcca ataaactgta agcagaagtg gttctaagaa gtgttgtgtc atacctatta 5520
gttaacctct cacctacaat atgtccaaac ctcctgccag cggaaattat cacataatag 5580
aggcgaagga agaaaacaac tatgtataat caaacacatg aaacatgaag cagaacataa 5640
tgatgcagca gcattaccaa ttataagaat ggcatccttt ttgtctagat gaagatagaa 5700
aatatagctc taaaatgcat tgtcatgatg aagtagcaag gctttataaa tcttaatttg 5760
tctttcgaag gaacctaaag aatgtaaatg agattgaaat gtgttcttta aacttcagaa 5820
agaaaaaaaa aactctaact tcatgacaat gaccatttaa aaagaagcag cctccaacag 5880
ggcactttcc tgataacatt ttgcattttc aacagaggag gggagagaaa aaagaactaa 5940
aaggaagaag atatttaata gattagttaa caacacaatt ttatgtgatt cacaggagtc 6000
ttctactgcg ggttgcctgc cttggcaaag gaattgaaga agctatcaca agaattgact 6060
tataagacat ccacacgatt tgagttccac aaagagtact tttga 6105
<210> 13
<211> 4100
<212> DNA
<213> tomato (Lycopersicon esculentum)
<400> 13
caataatcac aattattcaa aaacaataca aaatccgccc cctgatttcc ctcttgactt 60
ttcccttcta ccttaattcc ttttatatat atatacacat caccgttctt ctataatttc 120
tcaacatatt actatttttt caatctttct cagaatttat tttttttaca tttttgttac 180
ataggtcgat actagttata aatttcattt tgaaaaaaaa cagaggaaaa aagagcggga 240
aaatcaaatg gagatcgaaa acacgacaga tagtgtgaga ggatcgagag taggattcag 300
cggttcatta gttagtggga agaaaagtgc aaggttcaaa gatgatgaat cgtatgtaga 360
gatcactctt gatgttcgcg atgattctgt tttggttcaa aacattaaag gtgctgatca 420
tgaagctgca ttgttagcta gcaagctcga aaagaggcct aaccatacgc ttggctcaca 480
gctttcgttt catttgaaac aagtttcaaa ggaattgaaa agaatgactt cttctaataa 540
gtttcagaaa attgatagga gtaagtctgg tgctgctcgt gctctacgtg gacttcagtt 600
catgaacagg aatgtaggaa ctgaaggatg gtctgaagtt gaatcgcgat tcgatcaact 660
tgctgttgat ggaatgctag caaaaacatt gtttggtcaa tgcataggtt tgttcattac 720
acaaattctt ttggatttat acaataaaag tttctaataa ttagcatttt tgcaattgta 780
attaaggtat gaaggaatca agtgagtttg ctgaggaatt atttgatgct ctagctagga 840
agagatgcat cacatctcct gcggtgacta aggatgaact gcacgaattc tgggaacaaa 900
taactgatac tagctttgat gcccggcttc aaactttctt cgacatgtaa gattatgatc 960
actcaactaa atagttatat tgtggttttc tgagataata actatatgat gaatcaaccc 1020
tacaacataa tgaatgctaa attgctaatg atgtcttgaa ctgttacact agtctattac 1080
atgcaaccta tcgctcctac tttgaacatt ctcgattaag ttagaacttt gtcatcagat 1140
tctcaatagg atagattgtt gataaaatgg tataagatat tgttgatagc tcataatggt 1200
atgatgaaaa aaaaataggg tggataaaga tgcagatggg agaattactg aagaagaggt 1260
gaaagaggtg agagcttaag atgattattg aattaattca tgaaattata caaattcgaa 1320
gagctcaaaa ctcatacttc gttgatatgc ttatagatca tcagtcttag tgcttctgca 1380
aataagctgt caaaaatcga ggacaattca gatgaatatg cagctctcat catggaagaa 1440
ctagatccag gcaatgttgg atacattgag gttcgttttg aaacaagaat ttaagttata 1500
tacactgaca gtataaaaca aattcttaga caaggacatg agcttataaa tgattgtgtt 1560
tgatacagct gtacaacttg gagactttgc ttcttcaggc cccgagccac tcgatgaatc 1620
tttcaactaa cagcagagtt ctgagtcaga tgctaagtca gaagcttaag ccaacgaaag 1680
agcgaaatcc ctttaaaaga tgcaaaagaa ggctggacta tttcattgag gacaattgga 1740
agaggatttg ggtgatggtt ttgtggctat caatctgtgc aggactcttt acatggaaat 1800
ttattcaata taaacgtcgc gctgtctttg atgttatggg ctattgtgtc tctgtagcta 1860
aaggaggtgc tgaaacaaca aaatttaaca tggctctagt tcttttgcca gtatgcagaa 1920
acaccataac ttggctaaga agtaggacta agctcgggaa aataattcct tttgatgata 1980
acatcaattt ccacaaggta tatagcctga gaatataaat ggaaacacga aatcgttgaa 2040
cttaaatgtc tgattttttt cgtgttcttt gttgcaatct tttttaggta attgcatttg 2100
gagtagcagt tggtgtaggc ttacatgcaa tttcacactt aacatgtgat tttccccggc 2160
tgttacatgc cacggatgag gaatacgagc caatgaagcc attttttgga gatgaaagac 2220
caaacaacta ctggtggttt gtgaaaggca cggaaggatg gaccggtgtt gtgatggttg 2280
tccttatgat catagcgtat gtactagccc aaccatggtt tcgtagaaac cgactcaatc 2340
ttccatcaac aatcaagaaa ctcactggat ttaacgcttt ttggtactcc catcacttat 2400
tcgttatagt ctatgtcctc ttcatcattc acggatactt cctctacctc tcgaaaaaat 2460
ggtacaagaa gacagtaagt tcttaacaaa ataaattata tctaatgcta atcatgccct 2520
gccttgccat ataatggatc taatatcttt ctttttactc tgaaatattg agcagacatg 2580
gatgtatatc gcggtgccta tgatactata tgcttgtgaa cgtctgcttc gtgcatttag 2640
gtccgggtac aaggcagtga ggattttgaa ggtacataag agcttagacc attgcaagca 2700
ttaagattcc tagtttgatt acatgtgcat agaattttta tctaaaattc gagttttcag 2760
gtagctgtat atcctggaaa tgtaatggca gtgcacatgt ctaagcctca gggctttaag 2820
tacacaagtg gacagtacat ttttgtgaac tgttctgatg tttcttcatt tcaatggtaa 2880
atttgaaata aaccaagctc ctaatcaaac aaactgtata caaattatta ttattattat 2940
tactgctaaa atcatacata ttttgtactg taggcatcct tttaccatct cctcagctcc 3000
gggagatgat tacctaagtg tgcacattcg aacattgggc gattggacat ctcagcttaa 3060
aactctcttt tctaaggtat cgaattcatt aaatcagtta taacacagca aagacgaaat 3120
cttttgaaga aactttggaa gactaataat gcttgtactg atcatatttt aggtctgtga 3180
gcctccaact ggtgatcaaa gtggcctttt aagagcagat atagggaaag ctgactataa 3240
gcctaggtaa gggagtaaag tttgaaaatt tccaagtgct tttaacttat tttcccctga 3300
attttgattc atatcaatgt aaacagattg ccaaaactat tgattgatgg cccttatgga 3360
gcaccagcac aggattacaa gaaatacgac gtagtcctct tagtaggcct tggcattgga 3420
gcaacacctt tgataagcat agtaaaagat gtgctcaata acatcaacca acaaaaggac 3480
attgaagatg gtactaaggg tagtaaaaaa agtccttttg caactaaacg agcttacttc 3540
tattgggtaa cacgcgagca aggctcgttt gagtggttta agggtgtgat ggatgaggtc 3600
tcggagaacg atcaagaagg cctaattgag cttcacaact actgcaccag cgtttatgaa 3660
gaaggcgatg cccggtctgc actaatcaca atgcttcaat caatccacca agctaagagt 3720
ggcgtagaca ttgtctctgg gacaagagtc aagactcatt ttgctagacc aaattggcgc 3780
caagttttca aacgtgttac aattaatcat cctgatcaaa aaattggtta gtacgcatct 3840
ttgattacta ttcattaaaa ttaaaccgcc tctctacttc acaaactagg ggtaaggtcg 3900
atctttctgg actatattat atccagacct cacttatgaa attatacgtg ttaaattgac 3960
attcttattt tgaatttatg atattacagg tgtgttttat tgtggcccac aaggtctagt 4020
tggagaacta agacatctat ctcaagattt ctcacacaag acagacacaa agtttgaatt 4080
tcataaagaa aatttctaag 4100
<210> 14
<211> 5434
<212> DNA
<213> Arabidopsis thaliana (Arabidopsis thaliana)
<400> 14
gttgaaaatt gtgtgtttgt tttttttgta tcaatcggtt gagaagtgcc tctcttgttt 60
ttttttcctc tctttcttct ttattcatat ttcactttct ttctttcttt caaaatttct 120
caccttcttt ctcttctctt ctttgcttct acagttttca tggccatcgg tgaaaaccgt 180
gtagagaaat attaaatttg atatatattg tgttaagtgt tggttggttg gttaatctct 240
ctcactgatg aagttatcgc ctctgagttt ctctacgagt tcgagtttca gtcacgccga 300
tggaatcgac gacggtgttg agttaatatc atctccattt gccggcggcg caatgctgcc 360
ggtttttctc aacgatttga gtcgtaacag tggagaatcc ggaagcggta gtagctggga 420
aagagagctc gtggaggtta cgttagagct cgacgtcggc gatgactcca tactcgtctg 480
cggaatgtct gaggcggcgt ctgttgattc tcgggcgaga tcggtggatt tggtaaccgc 540
gaggttatcg aggaatttat cgaatgcgtc tacgagaatc cgccagaaac tagggaagtt 600
actgaggtcg gaatcgtgga aaacgacgac gtcttctacc gccggcgaga gagatagaga 660
tcttgaacgt cagacggcgg tgactttggg gattctgacg gcgagggata aacggaaaga 720
agacgcgaaa ctacagcgat caacgtcgag tgcgcaaaga gcgttaaaag gattacagtt 780
tataaataaa accacgagag gaaatagctg cgtctgcgat tgggattgcg attgcgatca 840
gatgtggaaa aaagttgaaa agcgattcga atcgctttct aaaaatggat tactcgcccg 900
agacgatttt ggcgagtgcg ttggtaagtc aataaatatc tatatataca tacgaaaatg 960
atcatggacc aatccactgt tttgtaaatt taaagggatg gtggattcga aggactttgc 1020
ggtgagtgta ttcgacgcgt tggctaggag aagaagacag aaactggaga agataacgaa 1080
agatgaactt catgatttct ggttacagat ttctgaccaa agcttcgacg cacgtcttca 1140
aattttcttc gacatgtacg tgtctctttg attctctctt tctttttatt tttaagtcaa 1200
gtttttgggt ttgtctttac gtttataact gttacgggaa taacgcactg caattagcaa 1260
aagcataaga aaacaaatgt attgatccaa gtgcaacgaa taattcagtt gacgttaata 1320
attgaagaaa gttttatcta taattgatat tccaaattct gaataacgcc ggcgaggtct 1380
catcaacttg cattttaata agatttgagt tgatttttgt tttctggtgg tattttatga 1440
agtttagctg attaaattca cttattgagt aaaaatgttg ttgattaaag ataatgttag 1500
cttaccaatc attctttgat tgtaatttgt tatctcttta gtgagaacta ccgcaacttc 1560
acaataattt tctacaattt tgggaattat tagccttaaa taaaataaca tgtgttggtt 1620
aagaacttaa gatgaattgt gattgttttt aaaaccaaat atcatatcct tgtagagaga 1680
tatagataga tacatcattt aaatcacgtg gtgttcttag ccgttggatc tggtagttca 1740
cgcaatcaat ggcgaaaatg gtctagtgag tttaagtaat gggccgcggt ttacttggcc 1800
cagtaaaaaa taaactttta ccaaattttc aaaaagtttc ctctttcagc tttctttttc 1860
ccgcaataag tttcttgcaa gtataagata caatgactct tatatacacc aagctgccaa 1920
aatgagtttg caatttttta ctctttttat ggccaaacat ttaattcagt aacattatgg 1980
tttacactca actcgttttg ttattctgtc atttttatga cataactaaa tatattttgt 2040
tgtttaatga ttctacaatt ctgttataat ttgtagtgtt actgaaagaa aaaaaaagat 2100
tctaactggt accggttttt tgttacaggg ctgatagtaa cgaagacggg aagatcacta 2160
gagaagaaat caaagaagta actttcttta ttcttcaaca tagagattac gtttaaaaca 2220
atcaatctct ttaacaactc ttgtactttt gaaacgcagc ttctaatgct aagtgcatca 2280
gcaaacaagt tagcaaaact caaggaacaa gctgaagagt acgcatctct gatcatggaa 2340
gagcttgatc ctgagaattt tggatacatt gaggttcaaa aaaacataat atattcgaac 2400
acacaatcaa cgattctttt atgtttctta acttttttgt gttgtctcag ttatggcaac 2460
tcgagacact cttacttcag agagacgcat acatgaatta cagtagacca cttagcacaa 2520
caagcggtgg agtaagtaca ccaagacgga atctaataag acctcgtcat gtggttcaaa 2580
agtgtagaaa aaaacttcaa tgtctgattc tagataactg gcaaagaagc tgggttcttt 2640
tagtgtgggt catgcttatg gccatcctct ttgtctggaa gtttctagag tacagagaaa 2700
aagctgcgtt taaggtcatg gggtattgtt taaccactgc taaaggagct gcagagactc 2760
ttaagctcaa catggctctg gttttattac ctgtctgtag aaacacattg acttggctaa 2820
gatctacacg cgctcgagct tgtgttcctt ttgatgacaa catcaatttc cataaggtac 2880
cttccttcag tctttcgatt tttcagtttt agtcagagca caacatttga gataaactct 2940
ttctctctct cttgtcctgt ttgtgtgcca gattattgct tgtgccatag cgattgggat 3000
acttgttcat gctggtactc atttggcgtg tgatttcccc cggattataa actcgagtcc 3060
agaacaattt gtcttgatcg cttctgcctt caatggtact aagcctacat tcaaagacct 3120
gatgacaggt gcagaaggaa tcaccgggat ctcgatggtg atcttgacaa ccattgcatt 3180
cacattagca tcaactcatt tcaggagaaa ccgtgtgagg cttccggcac cacttgatcg 3240
gttgactggc tttaacgcat tctggtacac tcatcacctt ctagtggttg tctacatcat 3300
gctcattgtc cacgggacct tcctgttctt tgctgataag tggtatcaga aaacggtaag 3360
cagcagcaac cataatctct ctttacttta aaccgaaaaa ccaaatgtcc tgaaacctaa 3420
attattgttg attaccactg ttcccagact tggatgtaca tctcggttcc tttggtgctc 3480
tacgtggcag aacgaagtct gcgagcttgt aggtcaaagc attactctgt caaaatcctc 3540
aaggcaacca ccataaaccg agcaaattca ttcctgttaa aaggtgtttt aataacaaaa 3600
taaacccatg aaccttcaat ctgatctctg caggtttcca tgctacctgg agaagtactc 3660
agcttaatca tgtcaaagcc tcctggattc aagtacaaga gcggtcagta catattcttg 3720
cagtgtccaa ctatctctcg atttgaatgg tgagtactga taccgaattc ccatagtgtt 3780
aacaaacatc tcaggtttca ctcagaaaga tattccctaa acttttccag gcacccattt 3840
tctattacct ctgcaccagg agatgaccaa cttagtgttc acatccgaac actcggagac 3900
tggacagagg agctacgacg agttctaact gtgggcaaag atctttcaac atgcgtgatt 3960
gggcgttcaa aattctctgc ctattgcaat attgatatga taaagtaaat ttcaagacat 4020
ctttgctttc tccttactca cttggatacc tattattaac atggcttgtt gatcctgcac 4080
tgacagccga ccaaaattac tagtagacgg tccatatgga gctccagcac aggactacag 4140
aagctatgat gtcttgctcc tcattggact gggaatagga gctactcctt tcataagcat 4200
cctgaaggat ctgctgaaca attcaagaga cgaacaaaca gtaagtccaa ttcagtgcac 4260
cagaaaagtt agtcttttct agaaccttgc accaaataca tatctctaaa cttcatatgg 4320
cacaggacaa tgaattcagc agatcggatt tcagctggaa tagctgtaca tcttcatata 4380
ccacagcaac cccaacttca acacatggag ggaaaaagaa agcagtgaag gctcactttt 4440
actgggtcac aagggagcca ggatccgttg aatggtttag aggagtaatg gaggaaatat 4500
cagacatgga ctgcagagta atactaaaca ccagcatatc attcatttgc atcacctctt 4560
taccattgat cgatatacta acatattcct tcatcttctc gtaatacagg gccagattga 4620
gttgcacaac taccttacaa gcgtatatga tgaaggtgat gcaagatcaa ccctgataaa 4680
aatggtccag gctttgaacc atgccaaaca tggagttgat attctatccg gaacacgggt 4740
aagaattgat gcagggcata taaccagaaa ctatttgcca atattaccta taactgacaa 4800
aataacatca ttcaaacagg tgagaacaca ttttgcaagg cccaactgga aggaagtctt 4860
cagtagcata gcaagaaagc atccaaattc gacagtcggt aattattcta tacaatcagc 4920
tgcttaccat caagacatct tataaatctc tcttctagga ctaacgaatt aataccattg 4980
gaaaagaaag aaaacttgca ataggaatta tgacacatgc aaacacatga acatgtctgc 5040
taatatttag gccaggtatt acgaagcata tgtgaaaaca atttatataa ttgtgcagga 5100
gtgttttact gcggcataca aaccgtggca aaggagttga agaagcaagc acaagacatg 5160
agtcaaaaaa caaccacacg gttcgagttc cataaggagc atttctaatt caatgttaca 5220
agccagcttc tatcactttc cctaaagtga gattcaaatc cagcccgcca ttattttttt 5280
tcacactaac ttcacagtca cttagcaaag tagattatat acactatgtt aaaaaaggaa 5340
acattgtctt gcctgtttgt atagaccccg cctaaaggca tgaaaataac aaatctaagt 5400
tactatacga aataatatac gtgtctttcc caag 5434
<210> 15
<211> 20
<212> DNA
<213> Artificial sequence (artificial sequence)
<400> 15
tccgacttcg ccgaatgcat 20
<210> 16
<211> 20
<212> DNA
<213> Artificial sequence (artificial sequence)
<400> 16
gcaatctggg ctcgagcaac 20
<210> 17
<211> 20
<212> DNA
<213> Artificial sequence (artificial sequence)
<400> 17
ggtgaggcag ttcgcgtcga 20
<210> 18
<211> 20
<212> DNA
<213> Artificial sequence (artificial sequence)
<400> 18
tctagcaagt aatccgtctt 20
<210> 19
<211> 20
<212> DNA
<213> Artificial sequence (artificial sequence)
<400> 19
taagcacaac cactgtcgac 20
<210> 20
<211> 20
<212> DNA
<213> Artificial sequence (artificial sequence)
<400> 20
tagctagcaa gctcgaaaag 20

Claims (10)

1. A method of breeding a plant sterile line comprising the steps of: reducing the expression or activity of a Rboh gene or its encoded protein in said plant.
2. The method of claim 1, wherein the Rboh gene is a gene specifically expressed during anther development of the plant.
3. The method according to claim 1, wherein "reducing" means that the reduction in the expression or activity of the Rboh gene or its encoded protein in the plant satisfies the following condition:
the ratio of A1/A0 is less than or equal to 80 percent, preferably less than or equal to 60 percent, more preferably less than or equal to 40 percent, and most preferably 0 to 30 percent;
wherein A1 is the expression or activity of the Rboh gene or its encoded protein in the plant; a0 is the expression or activity of the same Rboh gene or its coded protein in wild plant of the same type.
4. The application of the inhibitor of the Rboh gene or the coding protein thereof is characterized in that the inhibitor is used for cultivating a plant sterile line or a reagent or a kit for cultivating the plant sterile line.
5. A method for restoring fertility to a sterile line of a plant, comprising the steps of: cultivating the plant sterile line of claim 1 under low temperature conditions.
6. A method for converting a plant from sterile to fertile comprising the steps of: culturing a plant sterile line grown by the method of claim 1 under low temperature conditions.
7. A method of plant breeding comprising the steps of: crossing said plant sterile line of claim 1 with another parent plant to obtain a hybrid.
8. A method of breeding a plant, comprising the step of maintaining the plant sterile; transforming the plant from sterile to fertile; and/or maintaining the plants fertile and breeding;
in the step of maintaining the plant sterile, comprising maintaining a plant sterile line grown according to the method of claim 1;
the step of transforming a plant from sterile to fertile comprising transforming a plant from sterile to fertile by the method of claim 5 or 6.
9. A plant cell, wherein the expression or activity of a Rboh gene or a protein encoding it is reduced in said plant cell and/or in a plant in which it has developed.
10. A method of identifying a plant sterile line or propagation material thereof comprising the steps of: and detecting the expression or activity of the Rboh gene or the coded protein thereof in the plant sample.
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CN119410704A (en) * 2025-01-09 2025-02-11 中国农业科学院植物保护研究所 OsRbohB gene, osRbohB gene mutant and application thereof

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