CN113155713B - Label-free high-content video flow cytometer and method based on transfer learning - Google Patents
Label-free high-content video flow cytometer and method based on transfer learning Download PDFInfo
- Publication number
- CN113155713B CN113155713B CN202110592184.5A CN202110592184A CN113155713B CN 113155713 B CN113155713 B CN 113155713B CN 202110592184 A CN202110592184 A CN 202110592184A CN 113155713 B CN113155713 B CN 113155713B
- Authority
- CN
- China
- Prior art keywords
- sheath
- sample
- flow
- data
- liquid
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Active
Links
- 238000000034 method Methods 0.000 title claims abstract description 36
- 238000013526 transfer learning Methods 0.000 title claims abstract description 18
- 230000005284 excitation Effects 0.000 claims abstract description 45
- 230000003287 optical effect Effects 0.000 claims abstract description 26
- 238000012545 processing Methods 0.000 claims abstract description 21
- 230000000877 morphologic effect Effects 0.000 claims abstract description 9
- 239000000523 sample Substances 0.000 claims description 70
- 239000007788 liquid Substances 0.000 claims description 51
- 239000012530 fluid Substances 0.000 claims description 50
- 210000004027 cell Anatomy 0.000 claims description 38
- 239000000243 solution Substances 0.000 claims description 29
- 238000004422 calculation algorithm Methods 0.000 claims description 20
- 229910021642 ultra pure water Inorganic materials 0.000 claims description 18
- 239000012498 ultrapure water Substances 0.000 claims description 18
- 230000000694 effects Effects 0.000 claims description 15
- 238000004458 analytical method Methods 0.000 claims description 14
- 238000003384 imaging method Methods 0.000 claims description 14
- 238000013508 migration Methods 0.000 claims description 13
- 230000005012 migration Effects 0.000 claims description 13
- 239000004005 microsphere Substances 0.000 claims description 10
- 239000012488 sample solution Substances 0.000 claims description 10
- LFQSCWFLJHTTHZ-UHFFFAOYSA-N Ethanol Chemical compound CCO LFQSCWFLJHTTHZ-UHFFFAOYSA-N 0.000 claims description 9
- 238000006073 displacement reaction Methods 0.000 claims description 9
- 238000002347 injection Methods 0.000 claims description 9
- 239000007924 injection Substances 0.000 claims description 9
- 230000007935 neutral effect Effects 0.000 claims description 8
- VYXSBFYARXAAKO-WTKGSRSZSA-N chembl402140 Chemical compound Cl.C1=2C=C(C)C(NCC)=CC=2OC2=C\C(=N/CC)C(C)=CC2=C1C1=CC=CC=C1C(=O)OCC VYXSBFYARXAAKO-WTKGSRSZSA-N 0.000 claims description 7
- 239000000284 extract Substances 0.000 claims description 7
- 238000010801 machine learning Methods 0.000 claims description 7
- 238000007635 classification algorithm Methods 0.000 claims description 6
- 238000001514 detection method Methods 0.000 claims description 6
- 239000012535 impurity Substances 0.000 claims description 6
- 239000002699 waste material Substances 0.000 claims description 4
- 239000000872 buffer Substances 0.000 claims description 3
- 239000006285 cell suspension Substances 0.000 claims description 3
- 210000004748 cultured cell Anatomy 0.000 claims description 3
- 238000001914 filtration Methods 0.000 claims description 3
- 230000000717 retained effect Effects 0.000 claims description 3
- 238000007493 shaping process Methods 0.000 claims description 3
- 238000003860 storage Methods 0.000 claims description 3
- 239000008188 pellet Substances 0.000 claims description 2
- 238000007781 pre-processing Methods 0.000 claims description 2
- 238000011010 flushing procedure Methods 0.000 claims 3
- 238000005235 decoking Methods 0.000 claims 2
- 230000006835 compression Effects 0.000 claims 1
- 238000007906 compression Methods 0.000 claims 1
- 230000008878 coupling Effects 0.000 claims 1
- 238000010168 coupling process Methods 0.000 claims 1
- 238000005859 coupling reaction Methods 0.000 claims 1
- 239000008363 phosphate buffer Substances 0.000 claims 1
- 239000012266 salt solution Substances 0.000 claims 1
- 230000000007 visual effect Effects 0.000 claims 1
- 238000000149 argon plasma sintering Methods 0.000 abstract description 10
- 238000005516 engineering process Methods 0.000 abstract description 6
- 238000002360 preparation method Methods 0.000 abstract description 3
- 230000007246 mechanism Effects 0.000 abstract description 2
- 238000013527 convolutional neural network Methods 0.000 description 7
- 238000000684 flow cytometry Methods 0.000 description 7
- 230000008569 process Effects 0.000 description 6
- 238000012549 training Methods 0.000 description 6
- 230000015572 biosynthetic process Effects 0.000 description 4
- 206010008342 Cervix carcinoma Diseases 0.000 description 3
- 208000006105 Uterine Cervical Neoplasms Diseases 0.000 description 3
- 201000010881 cervical cancer Diseases 0.000 description 3
- 238000010586 diagram Methods 0.000 description 3
- 238000002474 experimental method Methods 0.000 description 3
- 238000002372 labelling Methods 0.000 description 3
- 238000003921 particle size analysis Methods 0.000 description 3
- 239000002953 phosphate buffered saline Substances 0.000 description 3
- 238000011176 pooling Methods 0.000 description 3
- 230000035945 sensitivity Effects 0.000 description 3
- 238000012795 verification Methods 0.000 description 3
- 239000011324 bead Substances 0.000 description 2
- 230000008901 benefit Effects 0.000 description 2
- 238000013480 data collection Methods 0.000 description 2
- 230000006870 function Effects 0.000 description 2
- 238000005286 illumination Methods 0.000 description 2
- 238000003368 label free method Methods 0.000 description 2
- 238000012986 modification Methods 0.000 description 2
- 230000004048 modification Effects 0.000 description 2
- 238000011160 research Methods 0.000 description 2
- 238000012360 testing method Methods 0.000 description 2
- 239000013598 vector Substances 0.000 description 2
- 239000004793 Polystyrene Substances 0.000 description 1
- 238000013528 artificial neural network Methods 0.000 description 1
- 230000009286 beneficial effect Effects 0.000 description 1
- 238000004364 calculation method Methods 0.000 description 1
- 230000008859 change Effects 0.000 description 1
- 239000003153 chemical reaction reagent Substances 0.000 description 1
- 238000010224 classification analysis Methods 0.000 description 1
- 238000010276 construction Methods 0.000 description 1
- 238000013500 data storage Methods 0.000 description 1
- 230000003247 decreasing effect Effects 0.000 description 1
- 238000013135 deep learning Methods 0.000 description 1
- 230000007812 deficiency Effects 0.000 description 1
- 238000013461 design Methods 0.000 description 1
- LOKCTEFSRHRXRJ-UHFFFAOYSA-I dipotassium trisodium dihydrogen phosphate hydrogen phosphate dichloride Chemical compound P(=O)(O)(O)[O-].[K+].P(=O)(O)([O-])[O-].[Na+].[Na+].[Cl-].[K+].[Cl-].[Na+] LOKCTEFSRHRXRJ-UHFFFAOYSA-I 0.000 description 1
- 238000013401 experimental design Methods 0.000 description 1
- 239000007850 fluorescent dye Substances 0.000 description 1
- 230000010354 integration Effects 0.000 description 1
- 230000002427 irreversible effect Effects 0.000 description 1
- 239000000463 material Substances 0.000 description 1
- 230000004660 morphological change Effects 0.000 description 1
- 238000011017 operating method Methods 0.000 description 1
- 229920002223 polystyrene Polymers 0.000 description 1
- 239000004065 semiconductor Substances 0.000 description 1
- 230000003068 static effect Effects 0.000 description 1
- 238000003756 stirring Methods 0.000 description 1
- 239000011550 stock solution Substances 0.000 description 1
- 230000002123 temporal effect Effects 0.000 description 1
- 238000013519 translation Methods 0.000 description 1
- 230000003245 working effect Effects 0.000 description 1
Images
Classifications
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N15/00—Investigating characteristics of particles; Investigating permeability, pore-volume or surface-area of porous materials
- G01N15/10—Investigating individual particles
- G01N15/14—Optical investigation techniques, e.g. flow cytometry
- G01N15/1404—Handling flow, e.g. hydrodynamic focusing
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N15/00—Investigating characteristics of particles; Investigating permeability, pore-volume or surface-area of porous materials
- G01N15/10—Investigating individual particles
- G01N15/14—Optical investigation techniques, e.g. flow cytometry
- G01N15/1429—Signal processing
- G01N15/1433—Signal processing using image recognition
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06F—ELECTRIC DIGITAL DATA PROCESSING
- G06F18/00—Pattern recognition
- G06F18/20—Analysing
- G06F18/24—Classification techniques
- G06F18/241—Classification techniques relating to the classification model, e.g. parametric or non-parametric approaches
- G06F18/2411—Classification techniques relating to the classification model, e.g. parametric or non-parametric approaches based on the proximity to a decision surface, e.g. support vector machines
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
- G06N20/00—Machine learning
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
- G06N3/00—Computing arrangements based on biological models
- G06N3/02—Neural networks
- G06N3/04—Architecture, e.g. interconnection topology
- G06N3/045—Combinations of networks
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06N—COMPUTING ARRANGEMENTS BASED ON SPECIFIC COMPUTATIONAL MODELS
- G06N3/00—Computing arrangements based on biological models
- G06N3/02—Neural networks
- G06N3/08—Learning methods
-
- G—PHYSICS
- G06—COMPUTING; CALCULATING OR COUNTING
- G06T—IMAGE DATA PROCESSING OR GENERATION, IN GENERAL
- G06T7/00—Image analysis
- G06T7/10—Segmentation; Edge detection
- G06T7/155—Segmentation; Edge detection involving morphological operators
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N15/00—Investigating characteristics of particles; Investigating permeability, pore-volume or surface-area of porous materials
- G01N15/10—Investigating individual particles
- G01N15/14—Optical investigation techniques, e.g. flow cytometry
- G01N15/1404—Handling flow, e.g. hydrodynamic focusing
- G01N15/1409—Handling samples, e.g. injecting samples
Landscapes
- Engineering & Computer Science (AREA)
- Theoretical Computer Science (AREA)
- Physics & Mathematics (AREA)
- General Physics & Mathematics (AREA)
- Data Mining & Analysis (AREA)
- Life Sciences & Earth Sciences (AREA)
- Software Systems (AREA)
- Artificial Intelligence (AREA)
- Chemical & Material Sciences (AREA)
- Evolutionary Computation (AREA)
- General Health & Medical Sciences (AREA)
- General Engineering & Computer Science (AREA)
- Health & Medical Sciences (AREA)
- Computer Vision & Pattern Recognition (AREA)
- Computing Systems (AREA)
- Mathematical Physics (AREA)
- Biochemistry (AREA)
- Dispersion Chemistry (AREA)
- Pathology (AREA)
- Immunology (AREA)
- Molecular Biology (AREA)
- Computational Linguistics (AREA)
- Biophysics (AREA)
- Biomedical Technology (AREA)
- Analytical Chemistry (AREA)
- Evolutionary Biology (AREA)
- Bioinformatics & Computational Biology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Medical Informatics (AREA)
- Signal Processing (AREA)
- Investigating Or Analysing Biological Materials (AREA)
- Investigating, Analyzing Materials By Fluorescence Or Luminescence (AREA)
Abstract
Description
技术领域technical field
本发明涉及高端医疗装备技术领域,特别涉及一种基于迁移学习的无标记高内涵视频流式细胞仪及方法。The invention relates to the technical field of high-end medical equipment, in particular to a marker-free high-content video flow cytometer and method based on transfer learning.
背景技术Background technique
本部分的陈述仅仅是提供了与本发明相关的背景技术,并不必然构成现有技术。The statements in this section merely provide background art related to the present invention and do not necessarily constitute prior art.
流式细胞仪是单细胞分析领域最常用的仪器之一,它兼具准确性和高效性,不仅可以快速、有效地提供单个的细胞形态或组分信息,还可以在短时间内检测、识别和统计大量细胞。一般来说,使用流式细胞进行特定细胞的鉴别,需要在单个细胞上标记特定的荧光染料。细胞标记过程难免会引入的各种化学试剂和复杂的操作过程,从而导致额外的时间和材料成本及细胞样本不可逆的性质变化。在某些应用领域,样本需要尽快进行检测或者样本需要保持活性,现有流式细胞仪需要的样本标记操作就会产生局限性。Flow cytometry is one of the most commonly used instruments in the field of single cell analysis. It is both accurate and efficient. It can not only quickly and effectively provide individual cell morphology or component information, but also detect and identify cells in a short time. and count a large number of cells. In general, identification of specific cells using flow cytometry requires the labeling of individual cells with specific fluorescent dyes. The cell labeling process will inevitably introduce various chemical reagents and complicated operating procedures, resulting in additional time and material costs and irreversible changes in the properties of cell samples. In some application fields, the samples need to be tested as soon as possible or the samples need to remain active, and the sample labeling operation required by the existing flow cytometer will have limitations.
发明人发现,成像流式细胞仪是一种新型的流式单细胞检测仪器,它同时具备流式细胞仪的高通量特性和荧光显微镜的显微成像能力,能够在较高通量的情况下进行单细胞图像的采集。多通道成像是成像流式细胞仪的最大优势,可以实现单一传感器上的多图像采集。因此,每一通道所占用的传感器成像区域有限,而获得的图像质量也受到较大的限制。在使用现有成像流式细胞仪进行单细胞无标记成像时,明场通道获取的细胞图像像素数较低,只能提供较少的细胞形态结构信息,这极大程度上限制了其应用的潜力。除此之外,现有成像流式细胞仪提供的数据为样本的图像,不能展示视频数据。静态的数据无法提供更多样本的原始状态数据,无法进行数据的溯回查找,这也一定程度上限制了其应用的领域。The inventors found that imaging flow cytometer is a new type of flow cytometry single-cell detection instrument, which has both the high-throughput characteristics of flow cytometer and the microscopic imaging capability of fluorescence microscope, and can Acquisition of single cell images. Multi-channel imaging is the biggest advantage of imaging flow cytometry, which can realize multiple image acquisition on a single sensor. Therefore, the sensor imaging area occupied by each channel is limited, and the obtained image quality is also relatively limited. When using the existing imaging flow cytometer for single-cell label-free imaging, the number of pixels of the cell image acquired by the bright field channel is low, which can only provide less information about cell morphology and structure, which greatly limits its application. potential. In addition, the data provided by the existing imaging flow cytometer is the image of the sample, and video data cannot be displayed. Static data cannot provide more samples of the original state data, and data retrospective search cannot be performed, which also limits its application fields to a certain extent.
发明内容Contents of the invention
为了解决现有技术的不足,本发明提供了一种基于迁移学习的无标记高内涵视频流式细胞仪检测流式细胞仪及方法,采用二维光散射技术,具有结构和形态信息的敏感性;使用流式技术并利用基于迁移学习的数据自动处理程序,简化数据采集的操作流程并减少人为干预;采用了无标记的方法,能够大大减少样本准备的工作量并降低对样本的损伤,具有较高的时效性和较低样本要求,极大的拓展了使用领域;集成了高速高分辨率的图像采集部件,能够保证高内涵流式图像的空间和时间分辨率,并能进行图样的可溯回的定位;增加的视频触发机制,能尽量减少采集数据的冗余。In order to solve the deficiencies of the existing technology, the present invention provides a label-free high-content video flow cytometer detection flow cytometer and method based on migration learning, which adopts two-dimensional light scattering technology and has the sensitivity of structural and morphological information ; Use streaming technology and use automatic data processing procedures based on transfer learning to simplify the operation process of data collection and reduce human intervention; use a label-free method, which can greatly reduce the workload of sample preparation and reduce damage to samples. The higher timeliness and lower sample requirements greatly expand the field of use; the integration of high-speed and high-resolution image acquisition components can ensure the spatial and temporal resolution of high-content streaming images, and can perform pattern resiliency. Backtracking positioning; the added video trigger mechanism can minimize the redundancy of collected data.
为了实现上述目的,本发明采用如下技术方案:In order to achieve the above object, the present invention adopts the following technical solutions:
本发明第一方面提供了一种基于迁移学习的无标记高内涵视频流式细胞仪。The first aspect of the present invention provides a label-free high-content video flow cytometer based on migration learning.
一种基于迁移学习的无标记高内涵视频流式细胞仪,包括:光学激发模块、鞘流控制模块、数据采集模块和数据处理模块;A label-free high-content video flow cytometer based on migration learning, including: an optical excitation module, a sheath flow control module, a data acquisition module and a data processing module;
光学激发模块发出的激发光束传输到鞘流控制模块鞘流室中,通过数据采集模块进行视频图像采集,并将采集到的图像数据传输到数据处理模块进行细胞检测;The excitation beam emitted by the optical excitation module is transmitted to the sheath flow chamber of the sheath flow control module, the video image is collected through the data acquisition module, and the collected image data is transmitted to the data processing module for cell detection;
其中,鞘流控制模块能够对样本液的空间流动进行限制,使样本形成流动的单细胞序列,同时光学激发模块产生的激发光束经过物镜的整形后耦合进入样本流动通道,使样本液和激发光束仅在预设区域内重合。Among them, the sheath flow control module can limit the spatial flow of the sample liquid, so that the sample forms a flowing single-cell sequence. At the same time, the excitation beam generated by the optical excitation module is coupled into the sample flow channel after being shaped by the objective lens, so that the sample liquid and the excitation beam Coincident only within the preset area.
作为可能的一些实现方式,光学激发模块至少包括沿光路依次设置的激光器、用于光强控制的中性密度片、用于准直和开关光路的激光光阑、用于调整方向的反射镜和用于整形的激发物镜,激光经过激发物镜后得到压缩的激发光束。As some possible implementations, the optical excitation module at least includes lasers arranged sequentially along the optical path, a neutral density sheet for light intensity control, a laser diaphragm for collimating and switching the optical path, a mirror for adjusting the direction, and Excitation objective lens used for shaping, the laser beam passes through the excitation objective lens to obtain a compressed excitation beam.
作为可能的一些实现方式,鞘流控制模块用于驱动细胞溶液形成单细胞通路,包括鞘流室、样本液注射泵和鞘液注射泵,样本液从鞘流室中间通道流入,鞘液从鞘流室周围通道流入,且鞘液速度大于样本液速度;As some possible implementations, the sheath flow control module is used to drive the cell solution to form a single-cell passage, including a sheath flow chamber, a sample fluid injection pump, and a sheath fluid injection pump. The sample fluid flows in from the middle channel of the sheath flow chamber, and the sheath fluid flows from the sheath The channel around the flow chamber flows in, and the velocity of the sheath fluid is greater than the velocity of the sample fluid;
鞘液进入鞘流室前会经过一个缓冲室,使液流稳定并将其流动方向进行预分散,保证鞘流在两个正交方向上同时对样本液进行压缩控制。Before the sheath liquid enters the sheath flow chamber, it will pass through a buffer chamber to stabilize the liquid flow and pre-disperse its flow direction, so as to ensure that the sheath flow can simultaneously compress and control the sample liquid in two orthogonal directions.
作为进一步的限定,鞘流控制模块还包括废液池,用于收集流过观测区域后的样本和鞘液。As a further limitation, the sheath flow control module further includes a waste liquid pool for collecting the sample and the sheath liquid after passing through the observation area.
作为可能的一些实现方式,数据采集模块包括采集光路和数据通路,采集光路至少包括采集物镜、高速CMOS相机和触发器,采集物镜的视场位于样本液和激发光束重合的部分,触发器位置较采集物镜位置靠前,用于控制相机的存储时间;As some possible implementations, the data acquisition module includes an acquisition optical path and a data path. The acquisition optical path at least includes an acquisition objective lens, a high-speed CMOS camera, and a trigger. The position of the acquisition objective lens is at the front, which is used to control the storage time of the camera;
数据通路将高速CMOS相机获取到的高质量视频数据传输并存储到数据处理模块。The data path transmits and stores the high-quality video data acquired by the high-speed CMOS camera to the data processing module.
作为可能的一些实现方式,数据处理模块对获取的图像数据进行自动化的预处理,然后采用基于迁移学习的CNN算法作为特征提取器,自动从图样中提取特征,再利用SVM算法进行细胞分类,其中:As some possible implementation methods, the data processing module automatically preprocesses the acquired image data, and then uses the CNN algorithm based on migration learning as a feature extractor to automatically extract features from the pattern, and then uses the SVM algorithm for cell classification. :
预处理,包括:preprocessing, including:
对视频数据逐帧拆分图像数据,然后从拆分的帧图像中定位需要识别的图样位置并自动截取保存,对得到的图像数据进行过滤处理;Split the image data frame by frame from the video data, then locate the position of the pattern to be recognized from the split frame image and automatically intercept and save it, and filter the obtained image data;
每张图像数据经形态学算法与粒度分析算法处理获得图像形态学粒度特征值,判断特征值是否符合标准,若符合则保留该图像,否则将图像剔除;Each image data is processed by morphological algorithm and particle size analysis algorithm to obtain image morphological granularity feature value, judge whether the feature value meets the standard, if it meets the image, keep the image, otherwise the image will be eliminated;
利用一个训练好的机器学习模型对保留的图像进行进一步的过滤。The retained images are further filtered using a trained machine learning model.
作为进一步的限定,对图像的形态与粒度特征进行门限判别,若在均值为中心的预设比例的区间内则保留图像,否则作为杂质进行剔除。As a further limitation, threshold judgment is performed on the morphology and granularity features of the image, and if the image is within the preset ratio interval centered on the mean, the image is retained; otherwise, it is removed as an impurity.
本发明第二方面提供了一种基于迁移学习的无标记高内涵视频流式细胞检测方法。The second aspect of the present invention provides a method for detecting flow cytometry of unmarked high-content video based on migration learning.
一种基于迁移学习的无标记高内涵视频流式细胞检测方法,利用本发明第一方面所述的基于迁移学习的无标记高内涵视频流式细胞仪,包括以下步骤:A method for detecting label-free high-content video flow cytometry based on migration learning, using the label-free high-content video flow cytometer based on migration learning described in the first aspect of the present invention, comprising the following steps:
分别将三种培养的细胞进行处理,形成单细胞悬液,配制成浓度一定的待测样本溶液并置于样本注射器中,选择PBS溶液作为鞘液并置于鞘液注射器中;Three kinds of cultured cells were processed respectively to form a single cell suspension, prepared into a sample solution with a certain concentration to be tested and placed in a sample syringe, and PBS solution was selected as the sheath fluid and placed in the sheath fluid syringe;
设置注射泵参数并启动注射泵,使鞘流能正常形成,样本液为30μL/h,鞘液为800μL/h;Set the syringe pump parameters and start the syringe pump so that the sheath flow can be formed normally, the sample fluid is 30 μL/h, and the sheath fluid is 800 μL/h;
启动光源和CMOS相机,观测鞘流形成情况及成像效果,并调节位移平台使系统工作在去焦模式下;Start the light source and CMOS camera, observe the formation of sheath flow and imaging effect, and adjust the displacement platform to make the system work in defocus mode;
启动触发器,当有样本流过的时候采集记录二维光散射的视频数据;Start a trigger to collect and record video data of two-dimensional light scattering when a sample flows through;
采集结束后,更换样本液和鞘液,使用酒精溶液和超纯水依次冲洗系统;After the collection, replace the sample fluid and the sheath fluid, and rinse the system with alcohol solution and ultrapure water in sequence;
使用预设分类算法自动处理视频结果,提取需要的细胞图样,并使用自动分类算法进行分析。Automatically process video results using preset classification algorithms, extract desired cell patterns, and use automatic classification algorithms for analysis.
本发明第三方面提供了一种基于迁移学习的无标记高内涵视频流式细胞仪的校准方法,利用本发明第一方面所述的基于迁移学习的无标记高内涵视频流式细胞仪,包括以下步骤:The third aspect of the present invention provides a method for calibrating a label-free high-content video flow cytometer based on migration learning, using the label-free high-content video flow cytometer based on migration learning described in the first aspect of the present invention, including The following steps:
将各部件放置到预设位置,使各模块能够正常工作,调整各模块的位置,使激发光路、鞘流和采集光路能够耦合;Place each component in the preset position so that each module can work normally, and adjust the position of each module so that the excitation light path, sheath flow and collection light path can be coupled;
配置若丹明6G溶液并置于样本液注射器中,将超纯水作为鞘液并置于鞘液注射器中,设置注射泵参数并启动注射泵使鞘流系统正常工作;Configure Rhodamine 6G solution and place it in the sample liquid syringe, use ultrapure water as the sheath liquid and place it in the sheath liquid syringe, set the syringe pump parameters and start the syringe pump to make the sheath flow system work normally;
控制采集光路中的位移台,使样本液流位于视野中央,并对样本进行聚焦,观测鞘流效果;Control the translation stage in the acquisition optical path, make the sample liquid flow in the center of the field of view, focus on the sample, and observe the effect of sheath flow;
启动光源,进一步校准光路中各器件的位置,观察并进一步调节各模块的位置,使液流能精准激发并确定系统聚焦平面;Start the light source, further calibrate the position of each device in the optical path, observe and further adjust the position of each module, so that the liquid flow can be accurately excited and determine the focal plane of the system;
启动CMOS相机和触发器,采集记录视频数据;Start the CMOS camera and trigger to collect and record video data;
采集结束后,更换样本液和鞘液,使用酒精溶液和超纯水依次冲洗系统;After the collection, replace the sample fluid and the sheath fluid, and rinse the system with alcohol solution and ultrapure water in sequence;
处理获取的数据,计算并验证鞘流的效果。Process the acquired data, calculate and verify the effect of the sheath flow.
本发明第四方面提供了一种基于迁移学习的无标记高内涵视频流式细胞仪的校准方法,利用本发明第一方面所述的基于迁移学习的无标记高内涵视频流式细胞仪,包括以下步骤:The fourth aspect of the present invention provides a method for calibrating a label-free high-content video flow cytometer based on migration learning, using the label-free high-content video flow cytometer based on migration learning described in the first aspect of the present invention, including The following steps:
配制待测样本的溶液并置于样本注射器中,根据样本液的不同选择超纯水或者磷酸缓冲盐溶液作为鞘液并置于鞘液注射器中;Prepare the solution of the sample to be tested and place it in the sample syringe, select ultrapure water or phosphate buffered saline solution as the sheath fluid according to the different sample fluids and place it in the sheath fluid syringe;
设置注射泵参数并启动注射泵,使鞘流能正常形成;Set the syringe pump parameters and start the syringe pump so that the sheath flow can be formed normally;
启动光源和CMOS相机,观测鞘流形成情况及成像效果,并调节位移平台使系统工作在去焦模式下;Start the light source and CMOS camera, observe the formation of sheath flow and imaging effect, and adjust the displacement platform to make the system work in defocus mode;
启动触发器,采集记录二维光散射的视频数据;Start the trigger to collect and record video data of two-dimensional light scattering;
采集结束后,更换样本液和鞘液,使用酒精溶液和超纯水依次冲洗系统;After the collection, replace the sample fluid and the sheath fluid, and rinse the system with alcohol solution and ultrapure water in sequence;
使用预设分析算法统计小球数量,并使用Mie模拟实验条件下微球图样。Use the preset analysis algorithm to count the number of beads, and use Mie to simulate the pattern of beads under the experimental conditions.
与现有技术相比,本发明的有益效果是:Compared with prior art, the beneficial effect of the present invention is:
1、本发明所述的流式细胞仪及方法,采集方法为无标记的方法,能够大大减少样本准备的工作量并降低对样本的损伤,具有较高的时效性和较低样本要求,可大大拓展其使用的领域。1. The flow cytometer and method of the present invention, the collection method is a label-free method, which can greatly reduce the workload of sample preparation and reduce the damage to the sample, has high timeliness and low sample requirements, and can Greatly expand its field of use.
2、本发明所述的流式细胞仪及方法,采用自动化的流式控制方案具有简洁性,参数可调节具有一定的灵活性,参数固定后可以重现具有较高稳定性。2. The flow cytometer and method of the present invention adopts an automated flow control scheme with simplicity, adjustable parameters with a certain degree of flexibility, and reproducible parameters with high stability after being fixed.
3、本发明所述的流式细胞仪及方法,通过缓冲室实现多方向的流式控制方法,同时保证了单细胞在激发方向和采集方向上的稳定,确保激发、流动和采集位置能精确汇合。3. The flow cytometer and method described in the present invention realize the multi-directional flow control method through the buffer chamber, and at the same time ensure the stability of the single cell in the excitation direction and the collection direction, and ensure that the excitation, flow and collection positions can be accurate confluence.
4、本发明所述的流式细胞仪及方法,基于二维光散射技术,具有结构和形态信息的敏感性,采用了高倍数的采集物镜,能够采集丰富的空间细节。4. The flow cytometer and method described in the present invention are based on two-dimensional light scattering technology, have the sensitivity of structural and morphological information, adopt high-magnification acquisition objective lenses, and can acquire rich spatial details.
5、本发明所述的流式细胞仪及方法,具有获取视频大数据的能力,采用了高速CMOS相机,能够采集丰富的时间细节,对一段时间内流过采集区域的样本进行全面的记录,提供高质量的原始信息。5. The flow cytometer and method described in the present invention have the ability to acquire large video data, adopt a high-speed CMOS camera, can collect rich time details, and comprehensively record the samples flowing through the collection area within a period of time. Provide high-quality original information.
6、本发明所述的流式细胞仪及方法,具有获取高内涵信息的能力,能够有效使用CMOS相机的全分辨率获取信息,提升单细胞信息采集的空间细节。6. The flow cytometer and method described in the present invention have the ability to obtain high-content information, can effectively use the full resolution of a CMOS camera to obtain information, and improve the spatial details of single-cell information collection.
7、本发明所述的流式细胞仪及方法,具有触发采集功能,能够减少采集无样本的冗余数据,减缓数据存储的压力。7. The flow cytometer and method described in the present invention have a trigger collection function, which can reduce redundant data collection without samples and reduce the pressure on data storage.
8、本发明所述的流式细胞仪及方法,采用了自动化的数据处理分析算法,最大程度上减少了人为主观性。8. The flow cytometer and method of the present invention adopts an automatic data processing and analysis algorithm, which reduces human subjectivity to the greatest extent.
9、本发明所述的流式细胞仪及方法,采用的分析算法具有可升级性,系统的整体效果不受限于当前研究的水平。9. The analysis algorithm used in the flow cytometer and method of the present invention is scalable, and the overall effect of the system is not limited to the current research level.
10、本发明所述的流式细胞仪及方法,具有可迁移性和扩展性,不受限于某一种类的细胞,可以极快的应用到不同领域的研究,具有一定普适性。10. The flow cytometer and method described in the present invention have mobility and scalability, are not limited to a certain type of cells, can be applied to research in different fields very quickly, and have certain universality.
本发明附加方面的优点将在下面的描述中部分给出,部分将从下面的描述中变得明显,或通过本发明的实践了解到。Advantages of additional aspects of the invention will be set forth in the description which follows, and in part will be obvious from the description, or may be learned by practice of the invention.
附图说明Description of drawings
构成本发明的一部分的说明书附图用来提供对本发明的进一步理解,本发明的示意性实施例及其说明用于解释本发明,并不构成对本发明的不当限定。The accompanying drawings constituting a part of the present invention are used to provide a further understanding of the present invention, and the schematic embodiments of the present invention and their descriptions are used to explain the present invention and do not constitute improper limitations to the present invention.
图1为本发明实施例1提供的基于迁移学习的无标记高内涵视频流式细胞仪示意图。FIG. 1 is a schematic diagram of a label-free high-content video flow cytometer based on transfer learning provided in Example 1 of the present invention.
图2为本发明实施例2提供的若丹明6G白光照明下的鞘流效果图及强度扫描图。Fig. 2 is the sheath flow effect diagram and intensity scanning diagram under Rhodamine 6G white light illumination provided by Example 2 of the present invention.
图3为本发明实施例3提供的实例中小球数量统计的结果图。Fig. 3 is a graph showing the results of counting the number of small balls in the example provided by
图4为本发明实施例3提供的两种小球的实验图样与模拟图样。Fig. 4 is the experimental pattern and the simulated pattern of two kinds of pellets provided by Example 3 of the present invention.
图5为本发明实施例4提供的细胞数量统计的结果图。Fig. 5 is a result graph of cell number statistics provided by Example 4 of the present invention.
图6为本发明实施例4提供的三种宫颈癌细胞系细胞的实验结果图。FIG. 6 is a graph showing experimental results of three cervical cancer cell lines provided in Example 4 of the present invention.
其中,1、激光器;2、中性密度片;3、激光光阑;4、反射镜;5、激发物镜;6、鞘流室;7、采集物镜;8、高速CMOS相机;9、数据处理与分析系统;10、触发器;11、样本液;12、鞘液。Among them, 1. Laser; 2. Neutral density film; 3. Laser aperture; 4. Mirror; 5. Excitation objective lens; 6. Sheath flow chamber; 7. Acquisition objective lens; 8. High-speed CMOS camera; and analysis system; 10, trigger; 11, sample liquid; 12, sheath liquid.
具体实施方式Detailed ways
下面结合附图与实施例对本发明作进一步说明。The present invention will be further described below in conjunction with the accompanying drawings and embodiments.
应该指出,以下详细说明都是示例性的,旨在对本发明提供进一步的说明。除非另有指明,本文使用的所有技术和科学术语具有与本发明所属技术领域的普通技术人员通常理解的相同含义。It should be noted that the following detailed description is exemplary and intended to provide further explanation of the present invention. Unless defined otherwise, all technical and scientific terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs.
需要注意的是,这里所使用的术语仅是为了描述具体实施方式,而非意图限制根据本发明的示例性实施方式。如在这里所使用的,除非上下文另外明确指出,否则单数形式也意图包括复数形式,此外,还应当理解的是,当在本说明书中使用术语“包含”和/或“包括”时,其指明存在特征、步骤、操作、器件、组件和/或它们的组合。It should be noted that the terminology used here is only for describing specific embodiments, and is not intended to limit exemplary embodiments according to the present invention. As used herein, unless the context clearly dictates otherwise, the singular is intended to include the plural, and it should also be understood that when the terms "comprising" and/or "comprising" are used in this specification, they mean There are features, steps, operations, means, components and/or combinations thereof.
在不冲突的情况下,本发明中的实施例及实施例中的特征可以相互组合。In the case of no conflict, the embodiments and the features in the embodiments of the present invention can be combined with each other.
实施例1Example 1
如图1所示,本发明实施例1提供了一种基于迁移学习的无标记高内涵视频流式细胞仪。主要包括:光学激发模块、鞘流控制模块、数据采集和数据处理模块。As shown in FIG. 1 ,
光学激发模块包括:激光器1(532nm)、中性密度片2(50%,32%,10%,1%等可选)、激光光阑3、反射镜4和激发物镜5(4X);激光器1产生激发光束,通过中性密度片调整强度后由物镜聚焦到观测区域,激光光阑起到光路开关的作用。The optical excitation module includes: laser 1 (532nm), neutral density sheet 2 (50%, 32%, 10%, 1%, etc. optional),
本实施例中,光学激发模块目的是将激光器产生的激光进行空间整形,使其在观测区域形成一个近似圆柱体的激发区域,结合鞘流模块对样本液的空间流动的限制,使样本和激发光束仅在一个有限的小区域内重合,因此极大提高采集的效率。In this embodiment, the purpose of the optical excitation module is to spatially shape the laser light generated by the laser, so that it forms an approximately cylindrical excitation area in the observation area. Combined with the limitation of the sheath flow module on the spatial flow of the sample liquid, the sample and excitation The beams only overlap in a limited small area, thus greatly improving the efficiency of collection.
鞘流控制模块包括:鞘流室6、驱动样本液11和鞘液12的注射泵以及废液池,注射泵是液体流动的动力来源,由样本注射泵和鞘液注射泵组成。注射泵将液体压入到鞘流室内,样本液从鞘流室中间通道流入,鞘液从周围通道流入;要满足鞘液速度远大于样本液速度,使鞘流能在流动方向上保持足够长的距离以便观测;废液池用于收集流过观测区域后的样本和鞘液。The sheath flow control module includes: a
数据采集及处理模块包括:采集物镜7(40X)、高速CMOS相机8、数据处理与分析系统9、触发器10以及一套精准位移装置,其它镜片需要根据实验设计进行增减。该模块需要能够精准聚焦以及去焦,以满足数据采集的需要;触发器的焦点略提前于高速CMOS相机,以便在样本通过时能及时控制相机工作;数据通路将高速CMOS相机获取到的高内涵视频数据传输并存储,用于后续的处理步骤;在数据处理时,系统能够自动定位并截取出视频数据中图样,并通过机器学习和深度学习的方法进行分析,以实现细胞的识别与分类。The data acquisition and processing module includes: acquisition objective lens 7 (40X), high-
本实施例中,数据采集及处理模块尽可能快的采集高内涵的图样视频,以形成视频大数据,可用于后续的分类分析并可进行可溯回的图样定位。In this embodiment, the data acquisition and processing module collects high-content pattern videos as quickly as possible to form video big data, which can be used for subsequent classification analysis and traceable pattern positioning.
具体过程如下:半导体泵浦激光器产生直径为1.052mm的532nm的激光光束,通过中性密度片调整光强和反射镜调整方向后进入激发物镜;经过4倍的激发物镜整形后耦合进鞘流室;The specific process is as follows: the semiconductor pump laser generates a 532nm laser beam with a diameter of 1.052mm, which enters the excitation objective lens after adjusting the light intensity and the direction of the mirror through the neutral density sheet; after being reshaped by the
在此同时,注射泵驱动样本液和鞘液流入鞘流室形成鞘流,样本液被限制在与激发光束相近的区域内流动;采集物镜也聚焦在样本液和激发光束重合的部分,其采集效率也获得了极大地提升;采集到的数据被传输到电脑进行存储和处理分析。At the same time, the syringe pump drives the sample liquid and the sheath liquid into the sheath flow chamber to form a sheath flow, and the sample liquid is restricted to flow in the area close to the excitation beam; the collection objective lens is also focused on the overlapping part of the sample liquid and the excitation beam, and its Efficiency has also been greatly improved; the collected data is transferred to a computer for storage, processing and analysis.
实施例2Example 2
为了检验实施例1各模块工作的效果及稳定性,本实施例使用若丹明6G溶液进行试验验证和校准。实验中,选用若丹明6G溶液作为样本液,鞘液选取超纯水。利用实施例所述的装置获取白光照明下视频数据,截取其中一帧进行分析,将该帧中间10行像素的强度进行扫描,做出平均强度曲线图,获取鞘流实际范围。In order to test the working effect and stability of each module in Example 1, Rhodamine 6G solution was used in this example for test verification and calibration. In the experiment, rhodamine 6G solution was selected as the sample liquid, and ultrapure water was selected as the sheath liquid. Use the device described in the embodiment to acquire video data under white light illumination, intercept one frame for analysis, scan the intensity of the 10 rows of pixels in the middle of the frame, make an average intensity curve, and obtain the actual range of sheath flow.
具体操作步骤:Specific steps:
(1)按照实施例1所述方案设计将各部件放置到预设位置,使各模块能够正常工作;(1) According to the scheme design described in
(2)称取4mg若丹明6G溶质溶解于4mL超纯水中,搅拌至充分溶解后置于样本注射器中,抽取超纯水作鞘液置于鞘液注射器中;设置注射泵参数并启动注射泵,样本液960μL/h,鞘液9600μL/h。(2) Weigh 4mg of rhodamine 6G solute and dissolve it in 4mL of ultrapure water, stir until fully dissolved and place it in the sample syringe, extract ultrapure water as the sheath fluid and place it in the sheath fluid syringe; set the parameters of the syringe pump and start Syringe pump, sample fluid 960μL/h, sheath fluid 9600μL/h.
(3)使用白光进行辅助照明,控制采集光路的位移台,使样本位于视野中央以便观察;(3) Use white light for auxiliary lighting, control the displacement stage of the collection optical path, so that the sample is located in the center of the field of view for observation;
(4)启动激光光源,进一步校准光路中各器件的位置,使激发光束、鞘流和采集光路能精准耦合;(4) Start the laser light source, further calibrate the position of each device in the optical path, so that the excitation beam, sheath flow and collection optical path can be accurately coupled;
(5)关闭激光光源,启动高速CMOS相机和触发器,采集记录高质量视频数据;(5) Turn off the laser light source, start the high-speed CMOS camera and trigger, and collect and record high-quality video data;
(6)采集结束后,更换样本液和鞘液,使用75%酒精溶液和超纯水依次冲洗系统;(6) After the collection, replace the sample solution and the sheath fluid, and use 75% alcohol solution and ultrapure water to flush the system in sequence;
(7)扫描一帧获取的图像中间行像素强度,计算并验证鞘流的效果。(7) Scan the pixel intensity in the middle row of the image obtained by scanning one frame, calculate and verify the effect of the sheath flow.
本实例中,获取的结果如图2中的(a)和图2中的(b),鞘流效果明显且稳定,经过计算,图像中间10行平均强度的FWHM为26μm,最大宽度约为40μm,这证明了实施例1所述的装置具有较好鞘流效果和稳定性。In this example, the obtained results are shown in (a) in Figure 2 and (b) in Figure 2. The sheath flow effect is obvious and stable. After calculation, the FWHM of the average intensity of the 10 lines in the middle of the image is 26 μm, and the maximum width is about 40 μm , which proves that the device described in Example 1 has better sheath flow effect and stability.
实施例3Example 3
为了进一步验证实施例1在微米量级尺度检测的灵敏度和在时间维度上的稳定性,本实施例使用两种标准的聚苯乙烯微球进行验证和校准。两种微球的尺寸选择为3.87μm和4.19μm。实验统计了3.87μm小球在20s左右的时间内的数量变化情况,并与Mie模拟的两种微球结果进行对比,结果为图3和图4。In order to further verify the sensitivity of the detection in the micron scale and the stability in the time dimension of Example 1, this embodiment uses two standard polystyrene microspheres for verification and calibration. The sizes of the two microspheres were chosen to be 3.87 μm and 4.19 μm. The experiment counted the change of the number of 3.87μm spheres in about 20s, and compared with the results of the two kinds of microspheres simulated by Mie. The results are shown in Figure 3 and Figure 4.
具体操作步骤:Specific steps:
(1)分别量取2μL标准微球原液溶于4mL超纯水中,配制成待测样本的溶液并置于样本注射器中,选择超纯水作为鞘液并置于鞘液注射器中;(1) Dissolve 2 μL of the standard microsphere stock solution in 4 mL of ultrapure water, prepare the solution of the sample to be tested and place it in the sample syringe, select ultrapure water as the sheath fluid and place it in the sheath fluid syringe;
(2)设置注射泵参数并启动注射泵,使鞘流能正常形成,样本液:30μL/h,鞘液800μL/h;(2) Set the parameters of the syringe pump and start the syringe pump so that the sheath flow can be formed normally, the sample solution: 30 μL/h, the sheath fluid 800 μL/h;
(3)启动光源和高速CMOS相机,观测鞘流形成情况及成像效果,并调节位移平台使系统工作在去焦模式下;(3) Start the light source and high-speed CMOS camera, observe the formation of the sheath flow and the imaging effect, and adjust the displacement platform to make the system work in the defocusing mode;
(4)启动触发器,采集记录二维光散射的高内涵视频数据;(4) Start the trigger to collect and record high-content video data of two-dimensional light scattering;
(5)采集结束后,更换样本液和鞘液,使用75%酒精溶液和超纯水依次冲洗系统;(5) After the collection, replace the sample solution and the sheath fluid, and use 75% alcohol solution and ultrapure water to rinse the system in sequence;
(6)使用分析算法统计小球数量,并使用Mie模拟实验条件下微球图样。(6) Use the analysis algorithm to count the number of microspheres, and use Mie to simulate the pattern of microspheres under the experimental conditions.
本实例中,统计了采集的3.87μm微球结果中20秒左右时间,得到了大约352个微球,证明了实施例1所述装置具有较高的时间稳定性。并将Mie模拟的微球结果与实验获取的图样结果进行了对比,证明了实施例1所述装置具有较高的微米量级分辨率。In this example, about 20 seconds of collected 3.87 μm microspheres were counted, and about 352 microspheres were obtained, which proves that the device described in Example 1 has high time stability. The results of the microspheres simulated by Mie were compared with the pattern results obtained by the experiment, which proves that the device described in Example 1 has a relatively high micron-scale resolution.
实施例4Example 4
本实例使用基于二维光散射的高质量视频流式细胞检测装置对三种宫颈癌细胞系细胞进行了检测和分析,使用的三种细胞为:Caski,HeLa和C33-A。算法自动处理获取到的视频数据,从每类中选取了5000个图样进行模型训练选取了600个图样进行结果验证,实现了对三种细胞的自动分类。In this example, three cervical cancer cell lines were detected and analyzed using a high-quality video flow cytometry device based on two-dimensional light scattering. The three cells used were: Caski, HeLa and C33-A. The algorithm automatically processed the acquired video data, selected 5,000 patterns from each category for model training, and selected 600 patterns for result verification, realizing the automatic classification of three types of cells.
具体操作步骤:Specific steps:
(1)分别将三种培养的细胞进行处理,使其形成单细胞悬液,配制成浓度约为50万个每毫升的待测样本溶液并置于样本注射器中,选择PBS溶液作为鞘液并置于鞘液注射器中;(1) Treat the three kinds of cultured cells to form a single cell suspension, prepare a sample solution to be tested with a concentration of about 500,000 per milliliter and place it in a sample syringe, select PBS solution as the sheath fluid and placed in the sheath fluid syringe;
(2)设置注射泵参数并启动注射泵,使鞘流能正常形成,样本液:30μL/h,鞘液800μL/h;(2) Set the parameters of the syringe pump and start the syringe pump so that the sheath flow can be formed normally, the sample solution: 30 μL/h, the sheath fluid 800 μL/h;
(3)启动光源和高速CMOS相机,观测鞘流形成情况及成像效果,并调节位移平台使系统工作在去焦模式下;(3) Start the light source and high-speed CMOS camera, observe the formation of the sheath flow and the imaging effect, and adjust the displacement platform to make the system work in the defocusing mode;
(4)启动触发器,采集记录二维光散射的高内涵视频数据;(4) Start the trigger to collect and record high-content video data of two-dimensional light scattering;
(5)采集结束后,更换样本液和鞘液,使用75%酒精溶液和超纯水依次冲洗系统;(5) After the collection, replace the sample solution and the sheath fluid, and use 75% alcohol solution and ultrapure water to rinse the system in sequence;
(6)使用分析算法自动处理视频结果,提取需要的细胞图样,并使用自动分类算法进行分析,结果如图5和图6所示。(6) Use the analysis algorithm to automatically process the video results, extract the required cell pattern, and use the automatic classification algorithm to analyze, the results are shown in Figure 5 and Figure 6.
本实例中,使用CNN-SVM的自动分类算法,使用基于迁移学习的CNN算法作为特征提取器,自动从图样中提取特征,再用SVM算法进行分类。分析中作为最后结果验证的每类600个图样与用于训练的每类5000个图样没有重叠,且都是随机选取的,分类结果如表1所示。In this example, the automatic classification algorithm of CNN-SVM is used, and the CNN algorithm based on transfer learning is used as the feature extractor to automatically extract features from the pattern, and then the SVM algorithm is used for classification. The 600 patterns of each class verified as the final result in the analysis do not overlap with the 5000 patterns of each class used for training, and they are all randomly selected. The classification results are shown in Table 1.
表1:三种宫颈癌细胞系细胞分类结果Table 1: Cell classification results of three cervical cancer cell lines
具体的,在进行细胞分类前先进行数字细胞过滤处理,主要利用形态学粒度分析方法以及机器学习算法进行二维光散射视频数据逐帧过滤。Specifically, digital cell filtering is performed before cell classification, mainly using morphological particle size analysis methods and machine learning algorithms to filter two-dimensional light scattering video data frame by frame.
形态学粒度分析方法主要对视频中的细胞碎片以及气泡等简单的杂质进行快速剔除。机器学习算法主要用来剔除形态变化更复杂的杂质,例如临床样本中的复杂杂质。The morphological particle size analysis method mainly quickly removes simple impurities such as cell debris and air bubbles in the video. Machine learning algorithms are mainly used to remove impurities with more complex morphological changes, such as complex impurities in clinical samples.
形态学和粒度的分析算法能够提取图样中散斑的强度及梯度相关信息,判别的门限是根据统计数据以均值为中心60%范围(±30%)内的数据。机器学习的步骤利用预先训练好机器学习模型进行判别,训练集为先验的图样与杂质数据集,训练网络模型为CNN。The analysis algorithm of morphology and granularity can extract the intensity and gradient related information of the speckle in the pattern, and the threshold of discrimination is based on the data within the 60% range (±30%) centered on the mean value according to the statistical data. In the step of machine learning, the pre-trained machine learning model is used for discrimination. The training set is a priori pattern and impurity data set, and the training network model is CNN.
CNN-SVM分类部分包括CNN特征提取器和SVM分类器。CNN特征提取器由一系列卷积池化层组成的神经网络构成,输入二维光散射图样训练数据,输出特征向量;本发明使用的CNN特征提取器使用迁移学习方法从自然图集图像分类构架迁移而来,能减少网络构建的时间和训练使用的图像数量。SVM分类器根据输入的特征向量,通过寻找最优参数,自动优化分类函数,实现样本的自动分类。所用的CNN网络为改进的Inception v3网络,该网络首先为5个卷积层和2个池化层交替结构,然后由三个子网络模块组合形成,最终由平均池化层整合输出结果。The CNN-SVM classification part includes CNN feature extractor and SVM classifier. The CNN feature extractor is composed of a series of convolutional pooling layers of neural networks, which input two-dimensional light scattering pattern training data and output feature vectors; the CNN feature extractor used in the present invention uses a migration learning method from the natural atlas image classification framework Migrated from it, it can reduce the time of network construction and the number of images used for training. According to the input feature vector, the SVM classifier automatically optimizes the classification function by finding the optimal parameters, and realizes the automatic classification of samples. The CNN network used is an improved Inception v3 network. The network first has an alternating structure of 5 convolutional layers and 2 pooling layers, and then is formed by combining three sub-network modules, and finally the output results are integrated by the average pooling layer.
以上所述仅为本发明的优选实施例而已,并不用于限制本发明,对于本领域的技术人员来说,本发明可以有各种更改和变化。凡在本发明的精神和原则之内,所作的任何修改、等同替换、改进等,均应包含在本发明的保护范围之内。The above descriptions are only preferred embodiments of the present invention, and are not intended to limit the present invention. For those skilled in the art, the present invention may have various modifications and changes. Any modifications, equivalent replacements, improvements, etc. made within the spirit and principles of the present invention shall be included within the protection scope of the present invention.
Claims (7)
Priority Applications (2)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN202110592184.5A CN113155713B (en) | 2021-05-28 | 2021-05-28 | Label-free high-content video flow cytometer and method based on transfer learning |
US17/804,073 US12223704B2 (en) | 2021-05-28 | 2022-05-25 | Label-free cell classification and screening system based on hybrid transfer learning |
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN202110592184.5A CN113155713B (en) | 2021-05-28 | 2021-05-28 | Label-free high-content video flow cytometer and method based on transfer learning |
Publications (2)
Publication Number | Publication Date |
---|---|
CN113155713A CN113155713A (en) | 2021-07-23 |
CN113155713B true CN113155713B (en) | 2023-05-05 |
Family
ID=76875246
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CN202110592184.5A Active CN113155713B (en) | 2021-05-28 | 2021-05-28 | Label-free high-content video flow cytometer and method based on transfer learning |
Country Status (1)
Country | Link |
---|---|
CN (1) | CN113155713B (en) |
Families Citing this family (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN118655065A (en) * | 2024-06-17 | 2024-09-17 | 中国科学院空天信息创新研究院 | A flow imaging cell classification system and method based on ultrasonic focusing and deep learning |
Citations (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN108444897A (en) * | 2018-03-06 | 2018-08-24 | 山东大学 | Label-free micro-current controlled cell instrument and method based on mating plate illumination and sheath Flow Technique |
Family Cites Families (5)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US9013692B2 (en) * | 2008-06-12 | 2015-04-21 | East Carolina University | Flow cytometer apparatus for three dimensional difraction imaging and related methods |
EP3865875A1 (en) * | 2011-09-25 | 2021-08-18 | Labrador Diagnostics LLC | Systems and methods for multi-analysis |
CN102507508B (en) * | 2011-09-28 | 2014-03-12 | 天津大学 | Flow measurement system for detecting tumor cells and analysis and monitoring method |
CN104266955A (en) * | 2014-09-02 | 2015-01-07 | 上海凯度机电科技有限公司 | High content image flow biological microscopic analysis system |
CN105181649B (en) * | 2015-10-09 | 2018-03-30 | 山东大学 | A kind of Novel free marking mode identifies cell instrument method |
-
2021
- 2021-05-28 CN CN202110592184.5A patent/CN113155713B/en active Active
Patent Citations (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN108444897A (en) * | 2018-03-06 | 2018-08-24 | 山东大学 | Label-free micro-current controlled cell instrument and method based on mating plate illumination and sheath Flow Technique |
Non-Patent Citations (1)
Title |
---|
吴岩,毕力夫.流式细胞计量术的原理.内蒙古医学院学报.2002,(03),全文. * |
Also Published As
Publication number | Publication date |
---|---|
CN113155713A (en) | 2021-07-23 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
US12223704B2 (en) | Label-free cell classification and screening system based on hybrid transfer learning | |
US10430640B2 (en) | System and method for classification of particles in a fluid sample | |
US11940371B2 (en) | Apparatuses, systems and methods for imaging flow cytometry | |
CN104266955A (en) | High content image flow biological microscopic analysis system | |
WO2020007326A1 (en) | High-throughput parallel raman spectrometer based on single cell detection | |
US10180398B2 (en) | Trajectory-based triggering system for hyperspectral imaging flow cytometer | |
CN113689456B (en) | Exosome particle size analysis device and exosome particle size analysis method based on deep learning | |
CN105181649B (en) | A kind of Novel free marking mode identifies cell instrument method | |
CN104502255A (en) | Three-dimensional imaging flow cytometer device | |
JP2015510592A (en) | Flow cytometer with digital holographic microscope | |
CN101702053A (en) | Method for automatically focusing microscope system in urinary sediment examination equipment | |
US11371929B2 (en) | Systems, devices and methods for three-dimensional imaging of moving particles | |
EP3865849A1 (en) | Sperm picking system | |
CN114782326B (en) | A system for classifying cervical cell images | |
CN101796391A (en) | Blood examination apparatus | |
CN113155713B (en) | Label-free high-content video flow cytometer and method based on transfer learning | |
CN104266956A (en) | High content image flow biological microscopic analysis method | |
JPH06102152A (en) | Standard solution for flow particle image analyzer | |
CN114813518A (en) | A label-free flow detection device and method based on single-camera dual-modal imaging | |
CN118688075A (en) | A single-cell high-throughput detection system and method based on integrated three-dimensional focusing | |
CN114778419B (en) | High-magnification optical amplification imaging flow cytometer | |
CN114518362A (en) | Sperm quality analysis device, system, method and readable storage medium | |
US20220299420A1 (en) | Systems and methods for image cytometry | |
CN114778420A (en) | Method and device for automatically counting algae | |
CN118111892A (en) | Ultra-multipath imaging flow cytometry detection device and method based on single source and single detector |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
PB01 | Publication | ||
PB01 | Publication | ||
SE01 | Entry into force of request for substantive examination | ||
SE01 | Entry into force of request for substantive examination | ||
GR01 | Patent grant | ||
GR01 | Patent grant |