CN113087807B - Shiga toxin B subunit recombinant protein-based probe for detecting carbohydrate antigen and preparation method thereof - Google Patents
Shiga toxin B subunit recombinant protein-based probe for detecting carbohydrate antigen and preparation method thereof Download PDFInfo
- Publication number
- CN113087807B CN113087807B CN202110338813.1A CN202110338813A CN113087807B CN 113087807 B CN113087807 B CN 113087807B CN 202110338813 A CN202110338813 A CN 202110338813A CN 113087807 B CN113087807 B CN 113087807B
- Authority
- CN
- China
- Prior art keywords
- shiga toxin
- recombinant protein
- subunit
- biotinylation
- protein
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Active
Links
- 108010079723 Shiga Toxin Proteins 0.000 title claims abstract description 118
- 102000007056 Recombinant Fusion Proteins Human genes 0.000 title claims abstract description 93
- 108010008281 Recombinant Fusion Proteins Proteins 0.000 title claims abstract description 93
- 239000000427 antigen Substances 0.000 title claims abstract description 51
- 108091007433 antigens Proteins 0.000 title claims abstract description 51
- 102000036639 antigens Human genes 0.000 title claims abstract description 51
- 150000001720 carbohydrates Chemical class 0.000 title claims abstract description 48
- 239000000523 sample Substances 0.000 title claims abstract description 43
- 238000002360 preparation method Methods 0.000 title claims abstract description 15
- 108090000765 processed proteins & peptides Proteins 0.000 claims abstract description 41
- YBJHBAHKTGYVGT-ZKWXMUAHSA-N (+)-Biotin Chemical group N1C(=O)N[C@@H]2[C@H](CCCCC(=O)O)SC[C@@H]21 YBJHBAHKTGYVGT-ZKWXMUAHSA-N 0.000 claims abstract description 34
- 238000001514 detection method Methods 0.000 claims abstract description 26
- 229960002685 biotin Drugs 0.000 claims abstract description 22
- 239000011616 biotin Substances 0.000 claims abstract description 22
- 239000002096 quantum dot Substances 0.000 claims abstract description 18
- 235000020958 biotin Nutrition 0.000 claims abstract description 17
- 108010090804 Streptavidin Proteins 0.000 claims abstract description 16
- 230000006287 biotinylation Effects 0.000 claims abstract description 16
- 238000007413 biotinylation Methods 0.000 claims abstract description 16
- 238000012986 modification Methods 0.000 claims abstract description 15
- 230000004048 modification Effects 0.000 claims abstract description 15
- 238000000746 purification Methods 0.000 claims abstract description 13
- 230000004927 fusion Effects 0.000 claims abstract description 11
- 238000000338 in vitro Methods 0.000 claims abstract description 9
- 230000008878 coupling Effects 0.000 claims abstract description 5
- 238000010168 coupling process Methods 0.000 claims abstract description 5
- 238000005859 coupling reaction Methods 0.000 claims abstract description 5
- 230000009465 prokaryotic expression Effects 0.000 claims abstract description 4
- 108090000790 Enzymes Proteins 0.000 claims abstract 2
- 102000004190 Enzymes Human genes 0.000 claims abstract 2
- 108090000623 proteins and genes Proteins 0.000 claims description 41
- 102000004169 proteins and genes Human genes 0.000 claims description 37
- 238000000034 method Methods 0.000 claims description 16
- FAPWRFPIFSIZLT-UHFFFAOYSA-M Sodium chloride Chemical compound [Na+].[Cl-] FAPWRFPIFSIZLT-UHFFFAOYSA-M 0.000 claims description 12
- 102000004196 processed proteins & peptides Human genes 0.000 claims description 11
- 108090000279 Peptidyltransferases Proteins 0.000 claims description 10
- 150000001413 amino acids Chemical group 0.000 claims description 9
- 239000000872 buffer Substances 0.000 claims description 9
- 125000003178 carboxy group Chemical group [H]OC(*)=O 0.000 claims description 9
- 230000002255 enzymatic effect Effects 0.000 claims description 9
- DHMQDGOQFOQNFH-UHFFFAOYSA-N Glycine Chemical compound NCC(O)=O DHMQDGOQFOQNFH-UHFFFAOYSA-N 0.000 claims description 8
- 238000006243 chemical reaction Methods 0.000 claims description 8
- 238000006911 enzymatic reaction Methods 0.000 claims description 7
- 239000011780 sodium chloride Substances 0.000 claims description 6
- 239000007983 Tris buffer Substances 0.000 claims description 5
- LENZDBCJOHFCAS-UHFFFAOYSA-N tris Chemical compound OCC(N)(CO)CO LENZDBCJOHFCAS-UHFFFAOYSA-N 0.000 claims description 5
- 239000004471 Glycine Substances 0.000 claims description 4
- 230000010355 oscillation Effects 0.000 claims description 4
- 229920001184 polypeptide Polymers 0.000 claims description 4
- 150000001615 biotins Chemical class 0.000 claims description 2
- 239000007853 buffer solution Substances 0.000 claims 2
- 239000001110 calcium chloride Substances 0.000 claims 1
- 229910001628 calcium chloride Inorganic materials 0.000 claims 1
- 238000002372 labelling Methods 0.000 claims 1
- 238000002156 mixing Methods 0.000 claims 1
- 230000014509 gene expression Effects 0.000 abstract description 9
- 238000000684 flow cytometry Methods 0.000 abstract description 8
- 206010028980 Neoplasm Diseases 0.000 abstract description 7
- 238000003745 diagnosis Methods 0.000 abstract description 4
- 210000004881 tumor cell Anatomy 0.000 abstract description 4
- 230000035945 sensitivity Effects 0.000 abstract description 3
- 210000004027 cell Anatomy 0.000 description 31
- 235000018102 proteins Nutrition 0.000 description 28
- PXHVJJICTQNCMI-UHFFFAOYSA-N Nickel Chemical compound [Ni] PXHVJJICTQNCMI-UHFFFAOYSA-N 0.000 description 12
- 238000002474 experimental method Methods 0.000 description 7
- PEDCQBHIVMGVHV-UHFFFAOYSA-N Glycerine Chemical compound OCC(O)CO PEDCQBHIVMGVHV-UHFFFAOYSA-N 0.000 description 6
- 238000010586 diagram Methods 0.000 description 6
- 229910052759 nickel Inorganic materials 0.000 description 6
- 150000002339 glycosphingolipids Chemical class 0.000 description 5
- 239000006228 supernatant Substances 0.000 description 5
- GPICTNQYKHHHTH-GUBZILKMSA-N Leu-Gln-Ser Chemical compound CC(C)C[C@H](N)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CO)C(O)=O GPICTNQYKHHHTH-GUBZILKMSA-N 0.000 description 4
- UBDDORVPVLEECX-FJXKBIBVSA-N Thr-Gly-Met Chemical compound [H]N[C@@H]([C@@H](C)O)C(=O)NCC(=O)N[C@@H](CCSC)C(O)=O UBDDORVPVLEECX-FJXKBIBVSA-N 0.000 description 4
- 238000005119 centrifugation Methods 0.000 description 4
- XKUKSGPZAADMRA-UHFFFAOYSA-N glycyl-glycyl-glycine Chemical compound NCC(=O)NCC(=O)NCC(O)=O XKUKSGPZAADMRA-UHFFFAOYSA-N 0.000 description 4
- 238000002415 sodium dodecyl sulfate polyacrylamide gel electrophoresis Methods 0.000 description 4
- 241001198387 Escherichia coli BL21(DE3) Species 0.000 description 3
- MGSDFCKWGHNUSM-QVPNGJTFSA-N alpha-L-Fucp-(1->2)-beta-D-Galp-(1->3)-beta-D-GlcpNAc Chemical compound O[C@H]1[C@H](O)[C@H](O)[C@H](C)O[C@H]1O[C@H]1[C@H](O[C@@H]2[C@H]([C@H](O)O[C@H](CO)[C@H]2O)NC(C)=O)O[C@H](CO)[C@H](O)[C@@H]1O MGSDFCKWGHNUSM-QVPNGJTFSA-N 0.000 description 3
- 238000004458 analytical method Methods 0.000 description 3
- 201000011510 cancer Diseases 0.000 description 3
- 238000013461 design Methods 0.000 description 3
- 238000000855 fermentation Methods 0.000 description 3
- 230000004151 fermentation Effects 0.000 description 3
- 108010067216 glycyl-glycyl-glycine Proteins 0.000 description 3
- RAXXELZNTBOGNW-UHFFFAOYSA-N imidazole Natural products C1=CNC=N1 RAXXELZNTBOGNW-UHFFFAOYSA-N 0.000 description 3
- 239000002773 nucleotide Substances 0.000 description 3
- 125000003729 nucleotide group Chemical group 0.000 description 3
- 125000003088 (fluoren-9-ylmethoxy)carbonyl group Chemical group 0.000 description 2
- WQVYAWIMAWTGMW-ZLUOBGJFSA-N Ala-Asp-Cys Chemical compound C[C@@H](C(=O)N[C@@H](CC(=O)O)C(=O)N[C@@H](CS)C(=O)O)N WQVYAWIMAWTGMW-ZLUOBGJFSA-N 0.000 description 2
- FVSOUJZKYWEFOB-KBIXCLLPSA-N Ala-Gln-Ile Chemical compound CC[C@H](C)[C@@H](C(O)=O)NC(=O)[C@H](CCC(N)=O)NC(=O)[C@H](C)N FVSOUJZKYWEFOB-KBIXCLLPSA-N 0.000 description 2
- BLGHHPHXVJWCNK-GUBZILKMSA-N Ala-Gln-Leu Chemical compound [H]N[C@@H](C)C(=O)N[C@@H](CCC(N)=O)C(=O)N[C@@H](CC(C)C)C(O)=O BLGHHPHXVJWCNK-GUBZILKMSA-N 0.000 description 2
- SUHLZMHFRALVSY-YUMQZZPRSA-N Ala-Lys-Gly Chemical compound NCCCC[C@H](NC(=O)[C@@H](N)C)C(=O)NCC(O)=O SUHLZMHFRALVSY-YUMQZZPRSA-N 0.000 description 2
- FSPQNLYOFCXUCE-BPUTZDHNSA-N Arg-Trp-Asn Chemical compound C1=CC=C2C(=C1)C(=CN2)C[C@@H](C(=O)N[C@@H](CC(=O)N)C(=O)O)NC(=O)[C@H](CCCN=C(N)N)N FSPQNLYOFCXUCE-BPUTZDHNSA-N 0.000 description 2
- BRCVLJZIIFBSPF-ZLUOBGJFSA-N Asn-Ala-Cys Chemical compound C[C@@H](C(=O)N[C@@H](CS)C(=O)O)NC(=O)[C@H](CC(=O)N)N BRCVLJZIIFBSPF-ZLUOBGJFSA-N 0.000 description 2
- KSBHCUSPLWRVEK-ZLUOBGJFSA-N Asn-Asn-Asp Chemical compound [H]N[C@@H](CC(N)=O)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CC(O)=O)C(O)=O KSBHCUSPLWRVEK-ZLUOBGJFSA-N 0.000 description 2
- BFOYULZBKYOKAN-OLHMAJIHSA-N Asp-Asp-Thr Chemical compound [H]N[C@@H](CC(O)=O)C(=O)N[C@@H](CC(O)=O)C(=O)N[C@@H]([C@@H](C)O)C(O)=O BFOYULZBKYOKAN-OLHMAJIHSA-N 0.000 description 2
- VSMYBNPOHYAXSD-GUBZILKMSA-N Asp-Lys-Glu Chemical compound OC(=O)C[C@H](N)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CCC(O)=O)C(O)=O VSMYBNPOHYAXSD-GUBZILKMSA-N 0.000 description 2
- GXHDGYOXPNQCKM-XVSYOHENSA-N Asp-Thr-Phe Chemical compound C[C@H]([C@@H](C(=O)N[C@@H](CC1=CC=CC=C1)C(=O)O)NC(=O)[C@H](CC(=O)O)N)O GXHDGYOXPNQCKM-XVSYOHENSA-N 0.000 description 2
- FNXOZWPPOJRBRE-XGEHTFHBSA-N Cys-Val-Thr Chemical compound C[C@H]([C@@H](C(=O)O)NC(=O)[C@H](C(C)C)NC(=O)[C@H](CS)N)O FNXOZWPPOJRBRE-XGEHTFHBSA-N 0.000 description 2
- 241000588724 Escherichia coli Species 0.000 description 2
- XQDGOJPVMSWZSO-SRVKXCTJSA-N Gln-Pro-Leu Chemical compound CC(C)C[C@@H](C(=O)O)NC(=O)[C@@H]1CCCN1C(=O)[C@H](CCC(=O)N)N XQDGOJPVMSWZSO-SRVKXCTJSA-N 0.000 description 2
- BKMOHWJHXQLFEX-IRIUXVKKSA-N Glu-Tyr-Thr Chemical compound C[C@H]([C@@H](C(=O)O)NC(=O)[C@H](CC1=CC=C(C=C1)O)NC(=O)[C@H](CCC(=O)O)N)O BKMOHWJHXQLFEX-IRIUXVKKSA-N 0.000 description 2
- FGGKGJHCVMYGCD-UKJIMTQDSA-N Glu-Val-Ile Chemical compound [H]N[C@@H](CCC(O)=O)C(=O)N[C@@H](C(C)C)C(=O)N[C@@H]([C@@H](C)CC)C(O)=O FGGKGJHCVMYGCD-UKJIMTQDSA-N 0.000 description 2
- KAJAOGBVWCYGHZ-JTQLQIEISA-N Gly-Gly-Phe Chemical compound [NH3+]CC(=O)NCC(=O)N[C@H](C([O-])=O)CC1=CC=CC=C1 KAJAOGBVWCYGHZ-JTQLQIEISA-N 0.000 description 2
- OQQKUTVULYLCDG-ONGXEEELSA-N Gly-Lys-Val Chemical compound CC(C)[C@H](NC(=O)[C@H](CCCCN)NC(=O)CN)C(O)=O OQQKUTVULYLCDG-ONGXEEELSA-N 0.000 description 2
- WMGHDYWNHNLGBV-ONGXEEELSA-N Gly-Phe-Ala Chemical compound OC(=O)[C@H](C)NC(=O)[C@@H](NC(=O)CN)CC1=CC=CC=C1 WMGHDYWNHNLGBV-ONGXEEELSA-N 0.000 description 2
- NOQPTNXSGNPJNS-YUMQZZPRSA-N His-Asn-Gly Chemical compound [H]N[C@@H](CC1=CNC=N1)C(=O)N[C@@H](CC(N)=O)C(=O)NCC(O)=O NOQPTNXSGNPJNS-YUMQZZPRSA-N 0.000 description 2
- CKRFDMPBSWYOBT-PPCPHDFISA-N Ile-Lys-Thr Chemical compound CC[C@H](C)[C@@H](C(=O)N[C@@H](CCCCN)C(=O)N[C@@H]([C@@H](C)O)C(=O)O)N CKRFDMPBSWYOBT-PPCPHDFISA-N 0.000 description 2
- CQGSYZCULZMEDE-UHFFFAOYSA-N Leu-Gln-Pro Natural products CC(C)CC(N)C(=O)NC(CCC(N)=O)C(=O)N1CCCC1C(O)=O CQGSYZCULZMEDE-UHFFFAOYSA-N 0.000 description 2
- RXGLHDWAZQECBI-SRVKXCTJSA-N Leu-Leu-Ser Chemical compound CC(C)C[C@H](N)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](CO)C(O)=O RXGLHDWAZQECBI-SRVKXCTJSA-N 0.000 description 2
- YWKNKRAKOCLOLH-OEAJRASXSA-N Leu-Phe-Thr Chemical compound CC(C)C[C@H](N)C(=O)N[C@H](C(=O)N[C@@H]([C@@H](C)O)C(O)=O)CC1=CC=CC=C1 YWKNKRAKOCLOLH-OEAJRASXSA-N 0.000 description 2
- ODUQLUADRKMHOZ-JYJNAYRXSA-N Lys-Glu-Tyr Chemical compound C1=CC(=CC=C1C[C@@H](C(=O)O)NC(=O)[C@H](CCC(=O)O)NC(=O)[C@H](CCCCN)N)O ODUQLUADRKMHOZ-JYJNAYRXSA-N 0.000 description 2
- QBEPTBMRQALPEV-MNXVOIDGSA-N Lys-Ile-Glu Chemical compound OC(=O)CC[C@@H](C(O)=O)NC(=O)[C@H]([C@@H](C)CC)NC(=O)[C@@H](N)CCCCN QBEPTBMRQALPEV-MNXVOIDGSA-N 0.000 description 2
- DIBZLYZXTSVGLN-CIUDSAMLSA-N Lys-Ser-Ser Chemical compound [H]N[C@@H](CCCCN)C(=O)N[C@@H](CO)C(=O)N[C@@H](CO)C(O)=O DIBZLYZXTSVGLN-CIUDSAMLSA-N 0.000 description 2
- PELXPRPDQRFBGQ-KKUMJFAQSA-N Lys-Tyr-Asn Chemical compound C1=CC(=CC=C1C[C@@H](C(=O)N[C@@H](CC(=O)N)C(=O)O)NC(=O)[C@H](CCCCN)N)O PELXPRPDQRFBGQ-KKUMJFAQSA-N 0.000 description 2
- VKCPHIOZDWUFSW-ONGXEEELSA-N Lys-Val-Gly Chemical compound OC(=O)CNC(=O)[C@H](C(C)C)NC(=O)[C@@H](N)CCCCN VKCPHIOZDWUFSW-ONGXEEELSA-N 0.000 description 2
- 206010027476 Metastases Diseases 0.000 description 2
- YBAFDPFAUTYYRW-UHFFFAOYSA-N N-L-alpha-glutamyl-L-leucine Natural products CC(C)CC(C(O)=O)NC(=O)C(N)CCC(O)=O YBAFDPFAUTYYRW-UHFFFAOYSA-N 0.000 description 2
- XMBSYZWANAQXEV-UHFFFAOYSA-N N-alpha-L-glutamyl-L-phenylalanine Natural products OC(=O)CCC(N)C(=O)NC(C(O)=O)CC1=CC=CC=C1 XMBSYZWANAQXEV-UHFFFAOYSA-N 0.000 description 2
- 239000001888 Peptone Substances 0.000 description 2
- 108010080698 Peptones Proteins 0.000 description 2
- IPFXYNKCXYGSSV-KKUMJFAQSA-N Phe-Ser-Lys Chemical compound C1=CC=C(C=C1)C[C@@H](C(=O)N[C@@H](CO)C(=O)N[C@@H](CCCCN)C(=O)O)N IPFXYNKCXYGSSV-KKUMJFAQSA-N 0.000 description 2
- MSSXKZBDKZAHCX-UNQGMJICSA-N Phe-Thr-Val Chemical compound [H]N[C@@H](CC1=CC=CC=C1)C(=O)N[C@@H]([C@@H](C)O)C(=O)N[C@@H](C(C)C)C(O)=O MSSXKZBDKZAHCX-UNQGMJICSA-N 0.000 description 2
- 240000004808 Saccharomyces cerevisiae Species 0.000 description 2
- UIGMAMGZOJVTDN-WHFBIAKZSA-N Ser-Gly-Ser Chemical compound OC[C@H](N)C(=O)NCC(=O)N[C@@H](CO)C(O)=O UIGMAMGZOJVTDN-WHFBIAKZSA-N 0.000 description 2
- DHPPWTOLRWYIDS-XKBZYTNZSA-N Thr-Cys-Glu Chemical compound [H]N[C@@H]([C@@H](C)O)C(=O)N[C@@H](CS)C(=O)N[C@@H](CCC(O)=O)C(O)=O DHPPWTOLRWYIDS-XKBZYTNZSA-N 0.000 description 2
- NDXSOKGYKCGYKT-VEVYYDQMSA-N Thr-Pro-Asp Chemical compound C[C@@H](O)[C@H](N)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CC(O)=O)C(O)=O NDXSOKGYKCGYKT-VEVYYDQMSA-N 0.000 description 2
- PWONLXBUSVIZPH-RHYQMDGZSA-N Thr-Val-Lys Chemical compound C[C@H]([C@@H](C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CCCCN)C(=O)O)N)O PWONLXBUSVIZPH-RHYQMDGZSA-N 0.000 description 2
- KZTLZZQTJMCGIP-ZJDVBMNYSA-N Thr-Val-Thr Chemical compound [H]N[C@@H]([C@@H](C)O)C(=O)N[C@@H](C(C)C)C(=O)N[C@@H]([C@@H](C)O)C(O)=O KZTLZZQTJMCGIP-ZJDVBMNYSA-N 0.000 description 2
- ADBFWLXCCKIXBQ-XIRDDKMYSA-N Trp-Asn-Leu Chemical compound CC(C)C[C@@H](C(=O)O)NC(=O)[C@H](CC(=O)N)NC(=O)[C@H](CC1=CNC2=CC=CC=C21)N ADBFWLXCCKIXBQ-XIRDDKMYSA-N 0.000 description 2
- VMXLNDRJXVAJFT-JYBASQMISA-N Trp-Thr-Ser Chemical compound C[C@H]([C@@H](C(=O)N[C@@H](CO)C(=O)O)NC(=O)[C@H](CC1=CNC2=CC=CC=C21)N)O VMXLNDRJXVAJFT-JYBASQMISA-N 0.000 description 2
- PEVVXUGSAKEPEN-AVGNSLFASA-N Tyr-Asn-Glu Chemical compound [H]N[C@@H](CC1=CC=C(O)C=C1)C(=O)N[C@@H](CC(N)=O)C(=O)N[C@@H](CCC(O)=O)C(O)=O PEVVXUGSAKEPEN-AVGNSLFASA-N 0.000 description 2
- QHDXUYOYTPWCSK-RCOVLWMOSA-N Val-Asp-Gly Chemical compound CC(C)[C@@H](C(=O)N[C@@H](CC(=O)O)C(=O)NCC(=O)O)N QHDXUYOYTPWCSK-RCOVLWMOSA-N 0.000 description 2
- JXGWQYWDUOWQHA-DZKIICNBSA-N Val-Gln-Phe Chemical compound CC(C)[C@@H](C(=O)N[C@@H](CCC(=O)N)C(=O)N[C@@H](CC1=CC=CC=C1)C(=O)O)N JXGWQYWDUOWQHA-DZKIICNBSA-N 0.000 description 2
- WUFHZIRMAZZWRS-OSUNSFLBSA-N Val-Thr-Ile Chemical compound CC[C@H](C)[C@@H](C(=O)O)NC(=O)[C@H]([C@@H](C)O)NC(=O)[C@H](C(C)C)N WUFHZIRMAZZWRS-OSUNSFLBSA-N 0.000 description 2
- 108010005233 alanylglutamic acid Proteins 0.000 description 2
- 230000027455 binding Effects 0.000 description 2
- 210000000170 cell membrane Anatomy 0.000 description 2
- 208000029742 colonic neoplasm Diseases 0.000 description 2
- 238000000295 emission spectrum Methods 0.000 description 2
- 108010063718 gamma-glutamylaspartic acid Proteins 0.000 description 2
- 230000013595 glycosylation Effects 0.000 description 2
- 238000006206 glycosylation reaction Methods 0.000 description 2
- HNDVDQJCIGZPNO-UHFFFAOYSA-N histidine Natural products OC(=O)C(N)CC1=CN=CN1 HNDVDQJCIGZPNO-UHFFFAOYSA-N 0.000 description 2
- 230000009401 metastasis Effects 0.000 description 2
- 235000019319 peptone Nutrition 0.000 description 2
- 108010051242 phenylalanylserine Proteins 0.000 description 2
- 239000013612 plasmid Substances 0.000 description 2
- 239000000843 powder Substances 0.000 description 2
- 230000008569 process Effects 0.000 description 2
- 238000010532 solid phase synthesis reaction Methods 0.000 description 2
- 108010061238 threonyl-glycine Proteins 0.000 description 2
- 108010073969 valyllysine Proteins 0.000 description 2
- IGXNPQWXIRIGBF-KEOOTSPTSA-N (2s)-2-[[(2s)-2-[[(2s)-2-[[(2s)-2-[[(2s)-2-amino-3-(1h-imidazol-5-yl)propanoyl]amino]-3-(1h-imidazol-5-yl)propanoyl]amino]-3-(1h-imidazol-5-yl)propanoyl]amino]-3-(1h-imidazol-5-yl)propanoyl]amino]-3-(1h-imidazol-5-yl)propanoic acid Chemical compound C([C@H](N)C(=O)N[C@@H](CC=1NC=NC=1)C(=O)N[C@@H](CC=1NC=NC=1)C(=O)N[C@@H](CC=1NC=NC=1)C(=O)N[C@@H](CC=1NC=NC=1)C(O)=O)C1=CN=CN1 IGXNPQWXIRIGBF-KEOOTSPTSA-N 0.000 description 1
- WWVANQJRLPIHNS-BKPPORCPSA-N 2-iminobiotin Chemical compound N1C(=N)N[C@H]2[C@H](CCCCC(=O)O)SC[C@H]21 WWVANQJRLPIHNS-BKPPORCPSA-N 0.000 description 1
- NGNQZCDZXSOVQU-UHFFFAOYSA-N 8,16,18,26,34,36-hexahydroxyhentetracontane-2,6,10,14,24,28,32-heptone Chemical compound CCCCCC(O)CC(O)CC(=O)CCCC(=O)CC(O)CC(=O)CCCCCC(O)CC(O)CC(=O)CCCC(=O)CC(O)CC(=O)CCCC(C)=O NGNQZCDZXSOVQU-UHFFFAOYSA-N 0.000 description 1
- ZVFVBBGVOILKPO-WHFBIAKZSA-N Ala-Gly-Ala Chemical compound C[C@H](N)C(=O)NCC(=O)N[C@@H](C)C(O)=O ZVFVBBGVOILKPO-WHFBIAKZSA-N 0.000 description 1
- VWEWCZSUWOEEFM-WDSKDSINSA-N Ala-Gly-Ala-Gly Chemical compound C[C@H](N)C(=O)NCC(=O)N[C@@H](C)C(=O)NCC(O)=O VWEWCZSUWOEEFM-WDSKDSINSA-N 0.000 description 1
- OYJCVIGKMXUVKB-GARJFASQSA-N Ala-Leu-Pro Chemical compound C[C@@H](C(=O)N[C@@H](CC(C)C)C(=O)N1CCC[C@@H]1C(=O)O)N OYJCVIGKMXUVKB-GARJFASQSA-N 0.000 description 1
- CTQIOCMSIJATNX-WHFBIAKZSA-N Asn-Gly-Ala Chemical compound [H]N[C@@H](CC(N)=O)C(=O)NCC(=O)N[C@@H](C)C(O)=O CTQIOCMSIJATNX-WHFBIAKZSA-N 0.000 description 1
- 241000894006 Bacteria Species 0.000 description 1
- 108020004705 Codon Proteins 0.000 description 1
- 206010009944 Colon cancer Diseases 0.000 description 1
- 206010052360 Colorectal adenocarcinoma Diseases 0.000 description 1
- FKXCBKCOSVIGCT-AVGNSLFASA-N Gln-Lys-Leu Chemical compound [H]N[C@@H](CCC(N)=O)C(=O)N[C@@H](CCCCN)C(=O)N[C@@H](CC(C)C)C(O)=O FKXCBKCOSVIGCT-AVGNSLFASA-N 0.000 description 1
- JVSBYEDSSRZQGV-GUBZILKMSA-N Glu-Asp-Leu Chemical compound CC(C)C[C@@H](C(O)=O)NC(=O)[C@H](CC(O)=O)NC(=O)[C@@H](N)CCC(O)=O JVSBYEDSSRZQGV-GUBZILKMSA-N 0.000 description 1
- LVCHEMOPBORRLB-DCAQKATOSA-N Glu-Gln-Lys Chemical compound NCCCC[C@H](NC(=O)[C@H](CCC(N)=O)NC(=O)[C@@H](N)CCC(O)=O)C(O)=O LVCHEMOPBORRLB-DCAQKATOSA-N 0.000 description 1
- NKLRYVLERDYDBI-FXQIFTODSA-N Glu-Glu-Asp Chemical compound OC(=O)CC[C@H](N)C(=O)N[C@@H](CCC(O)=O)C(=O)N[C@@H](CC(O)=O)C(O)=O NKLRYVLERDYDBI-FXQIFTODSA-N 0.000 description 1
- GPSHCSTUYOQPAI-JHEQGTHGSA-N Glu-Thr-Gly Chemical compound [H]N[C@@H](CCC(O)=O)C(=O)N[C@@H]([C@@H](C)O)C(=O)NCC(O)=O GPSHCSTUYOQPAI-JHEQGTHGSA-N 0.000 description 1
- WHUUTDBJXJRKMK-UHFFFAOYSA-N Glutamic acid Natural products OC(=O)C(N)CCC(O)=O WHUUTDBJXJRKMK-UHFFFAOYSA-N 0.000 description 1
- PYTZFYUXZZHOAD-WHFBIAKZSA-N Gly-Ala-Ala Chemical compound OC(=O)[C@H](C)NC(=O)[C@H](C)NC(=O)CN PYTZFYUXZZHOAD-WHFBIAKZSA-N 0.000 description 1
- CQIIXEHDSZUSAG-QWRGUYRKSA-N Gly-His-His Chemical compound C([C@H](NC(=O)CN)C(=O)N[C@@H](CC=1NC=NC=1)C(O)=O)C1=CN=CN1 CQIIXEHDSZUSAG-QWRGUYRKSA-N 0.000 description 1
- 108010093488 His-His-His-His-His-His Proteins 0.000 description 1
- ZNOBVZFCHNHKHA-KBIXCLLPSA-N Ile-Ser-Glu Chemical compound CC[C@H](C)[C@@H](C(=O)N[C@@H](CO)C(=O)N[C@@H](CCC(=O)O)C(=O)O)N ZNOBVZFCHNHKHA-KBIXCLLPSA-N 0.000 description 1
- ROHFNLRQFUQHCH-YFKPBYRVSA-N L-leucine Chemical compound CC(C)C[C@H](N)C(O)=O ROHFNLRQFUQHCH-YFKPBYRVSA-N 0.000 description 1
- HRTRLSRYZZKPCO-BJDJZHNGSA-N Leu-Ile-Ser Chemical compound [H]N[C@@H](CC(C)C)C(=O)N[C@@H]([C@@H](C)CC)C(=O)N[C@@H](CO)C(O)=O HRTRLSRYZZKPCO-BJDJZHNGSA-N 0.000 description 1
- VULJUQZPSOASBZ-SRVKXCTJSA-N Leu-Pro-Glu Chemical compound [H]N[C@@H](CC(C)C)C(=O)N1CCC[C@H]1C(=O)N[C@@H](CCC(O)=O)C(O)=O VULJUQZPSOASBZ-SRVKXCTJSA-N 0.000 description 1
- ROHFNLRQFUQHCH-UHFFFAOYSA-N Leucine Natural products CC(C)CC(N)C(O)=O ROHFNLRQFUQHCH-UHFFFAOYSA-N 0.000 description 1
- 206010025323 Lymphomas Diseases 0.000 description 1
- MPGJIHFJCXTVEX-KKUMJFAQSA-N Phe-Arg-Glu Chemical compound [H]N[C@@H](CC1=CC=CC=C1)C(=O)N[C@@H](CCCNC(N)=N)C(=O)N[C@@H](CCC(O)=O)C(O)=O MPGJIHFJCXTVEX-KKUMJFAQSA-N 0.000 description 1
- ONIBWKKTOPOVIA-UHFFFAOYSA-N Proline Natural products OC(=O)C1CCCN1 ONIBWKKTOPOVIA-UHFFFAOYSA-N 0.000 description 1
- 108010017898 Shiga Toxins Proteins 0.000 description 1
- 241000607768 Shigella Species 0.000 description 1
- XPNSAQMEAVSQRD-FBCQKBJTSA-N Thr-Gly-Gly Chemical compound C[C@@H](O)[C@H](N)C(=O)NCC(=O)NCC(O)=O XPNSAQMEAVSQRD-FBCQKBJTSA-N 0.000 description 1
- AYFVYJQAPQTCCC-UHFFFAOYSA-N Threonine Natural products CC(O)C(N)C(O)=O AYFVYJQAPQTCCC-UHFFFAOYSA-N 0.000 description 1
- 239000004473 Threonine Substances 0.000 description 1
- 101710117021 Tyrosine-protein phosphatase YopH Proteins 0.000 description 1
- 230000002159 abnormal effect Effects 0.000 description 1
- KOSRFJWDECSPRO-UHFFFAOYSA-N alpha-L-glutamyl-L-glutamic acid Natural products OC(=O)CCC(N)C(=O)NC(CCC(O)=O)C(O)=O KOSRFJWDECSPRO-UHFFFAOYSA-N 0.000 description 1
- AVKUERGKIZMTKX-NJBDSQKTSA-N ampicillin Chemical compound C1([C@@H](N)C(=O)N[C@H]2[C@H]3SC([C@@H](N3C2=O)C(O)=O)(C)C)=CC=CC=C1 AVKUERGKIZMTKX-NJBDSQKTSA-N 0.000 description 1
- 229960000723 ampicillin Drugs 0.000 description 1
- 230000003698 anagen phase Effects 0.000 description 1
- 108010038633 aspartylglutamate Proteins 0.000 description 1
- 230000009286 beneficial effect Effects 0.000 description 1
- 238000006555 catalytic reaction Methods 0.000 description 1
- 230000024245 cell differentiation Effects 0.000 description 1
- 230000010261 cell growth Effects 0.000 description 1
- 238000003776 cleavage reaction Methods 0.000 description 1
- 201000010897 colon adenocarcinoma Diseases 0.000 description 1
- 238000007796 conventional method Methods 0.000 description 1
- 230000003247 decreasing effect Effects 0.000 description 1
- 230000007812 deficiency Effects 0.000 description 1
- 238000006073 displacement reaction Methods 0.000 description 1
- 239000003814 drug Substances 0.000 description 1
- 230000000694 effects Effects 0.000 description 1
- 230000005284 excitation Effects 0.000 description 1
- 235000013305 food Nutrition 0.000 description 1
- 239000012634 fragment Substances 0.000 description 1
- 238000013467 fragmentation Methods 0.000 description 1
- 238000006062 fragmentation reaction Methods 0.000 description 1
- 235000013922 glutamic acid Nutrition 0.000 description 1
- 239000004220 glutamic acid Substances 0.000 description 1
- 108010055341 glutamyl-glutamic acid Proteins 0.000 description 1
- VPZXBVLAVMBEQI-UHFFFAOYSA-N glycyl-DL-alpha-alanine Natural products OC(=O)C(C)NC(=O)CN VPZXBVLAVMBEQI-UHFFFAOYSA-N 0.000 description 1
- 108010020688 glycylhistidine Proteins 0.000 description 1
- 108010028295 histidylhistidine Proteins 0.000 description 1
- 239000012535 impurity Substances 0.000 description 1
- 238000011534 incubation Methods 0.000 description 1
- 239000000411 inducer Substances 0.000 description 1
- 230000006698 induction Effects 0.000 description 1
- 239000002054 inoculum Substances 0.000 description 1
- BPHPUYQFMNQIOC-NXRLNHOXSA-N isopropyl beta-D-thiogalactopyranoside Chemical compound CC(C)S[C@@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O BPHPUYQFMNQIOC-NXRLNHOXSA-N 0.000 description 1
- 238000004020 luminiscence type Methods 0.000 description 1
- 210000004962 mammalian cell Anatomy 0.000 description 1
- 239000003550 marker Substances 0.000 description 1
- 239000000463 material Substances 0.000 description 1
- 239000012528 membrane Substances 0.000 description 1
- 239000000203 mixture Substances 0.000 description 1
- 238000002715 modification method Methods 0.000 description 1
- 208000025113 myeloid leukemia Diseases 0.000 description 1
- 230000007935 neutral effect Effects 0.000 description 1
- 238000005457 optimization Methods 0.000 description 1
- 230000002018 overexpression Effects 0.000 description 1
- 230000001575 pathological effect Effects 0.000 description 1
- 239000000047 product Substances 0.000 description 1
- 238000001742 protein purification Methods 0.000 description 1
- 238000011160 research Methods 0.000 description 1
- 230000007017 scission Effects 0.000 description 1
- 238000012216 screening Methods 0.000 description 1
- 230000019491 signal transduction Effects 0.000 description 1
- 239000000243 solution Substances 0.000 description 1
- 108090000250 sortase A Proteins 0.000 description 1
- 239000000758 substrate Substances 0.000 description 1
- 230000002588 toxic effect Effects 0.000 description 1
- 238000011282 treatment Methods 0.000 description 1
- 239000000439 tumor marker Substances 0.000 description 1
- 230000001018 virulence Effects 0.000 description 1
- 238000001262 western blot Methods 0.000 description 1
- HFQKBOPMAOTAIR-TZSVBWBLSA-N α-d-galactosyl-(1->4)-β-d-galactosyl-(1->4)-β-d-glucosylceramide Chemical compound O[C@@H]1[C@@H](O)[C@H](OC[C@@H]([C@H](O)/C=C/CCCCCCCCCCCCC)NC(C)=O)O[C@H](CO)[C@H]1O[C@H]1[C@H](O)[C@@H](O)[C@@H](O[C@@H]2[C@@H]([C@@H](O)[C@@H](O)[C@@H](CO)O2)O)[C@@H](CO)O1 HFQKBOPMAOTAIR-TZSVBWBLSA-N 0.000 description 1
Images
Classifications
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K14/00—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof
- C07K14/195—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria
- C07K14/24—Peptides having more than 20 amino acids; Gastrins; Somatostatins; Melanotropins; Derivatives thereof from bacteria from Enterobacteriaceae (F), e.g. Citrobacter, Serratia, Proteus, Providencia, Morganella, Yersinia
- C07K14/25—Shigella (G)
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12P—FERMENTATION OR ENZYME-USING PROCESSES TO SYNTHESISE A DESIRED CHEMICAL COMPOUND OR COMPOSITION OR TO SEPARATE OPTICAL ISOMERS FROM A RACEMIC MIXTURE
- C12P21/00—Preparation of peptides or proteins
- C12P21/02—Preparation of peptides or proteins having a known sequence of two or more amino acids, e.g. glutathione
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
- G01N33/574—Immunoassay; Biospecific binding assay; Materials therefor for cancer
- G01N33/57407—Specifically defined cancers
- G01N33/57419—Specifically defined cancers of colon
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/53—Immunoassay; Biospecific binding assay; Materials therefor
- G01N33/574—Immunoassay; Biospecific binding assay; Materials therefor for cancer
- G01N33/57484—Immunoassay; Biospecific binding assay; Materials therefor for cancer involving compounds serving as markers for tumor, cancer, neoplasia, e.g. cellular determinants, receptors, heat shock/stress proteins, A-protein, oligosaccharides, metabolites
- G01N33/57492—Immunoassay; Biospecific binding assay; Materials therefor for cancer involving compounds serving as markers for tumor, cancer, neoplasia, e.g. cellular determinants, receptors, heat shock/stress proteins, A-protein, oligosaccharides, metabolites involving compounds localized on the membrane of tumor or cancer cells
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N33/00—Investigating or analysing materials by specific methods not covered by groups G01N1/00 - G01N31/00
- G01N33/48—Biological material, e.g. blood, urine; Haemocytometers
- G01N33/50—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing
- G01N33/58—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving labelled substances
- G01N33/588—Chemical analysis of biological material, e.g. blood, urine; Testing involving biospecific ligand binding methods; Immunological testing involving labelled substances with semiconductor nanocrystal label, e.g. quantum dots
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2319/00—Fusion polypeptide
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2319/00—Fusion polypeptide
- C07K2319/20—Fusion polypeptide containing a tag with affinity for a non-protein ligand
- C07K2319/21—Fusion polypeptide containing a tag with affinity for a non-protein ligand containing a His-tag
-
- C—CHEMISTRY; METALLURGY
- C07—ORGANIC CHEMISTRY
- C07K—PEPTIDES
- C07K2319/00—Fusion polypeptide
- C07K2319/40—Fusion polypeptide containing a tag for immunodetection, or an epitope for immunisation
- C07K2319/41—Fusion polypeptide containing a tag for immunodetection, or an epitope for immunisation containing a Myc-tag
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N2333/00—Assays involving biological materials from specific organisms or of a specific nature
- G01N2333/195—Assays involving biological materials from specific organisms or of a specific nature from bacteria
- G01N2333/24—Assays involving biological materials from specific organisms or of a specific nature from bacteria from Enterobacteriaceae (F), e.g. Citrobacter, Serratia, Proteus, Providencia, Morganella, Yersinia
- G01N2333/25—Shigella (G)
Landscapes
- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Chemical & Material Sciences (AREA)
- Engineering & Computer Science (AREA)
- Molecular Biology (AREA)
- Immunology (AREA)
- Urology & Nephrology (AREA)
- Hematology (AREA)
- Biomedical Technology (AREA)
- Biochemistry (AREA)
- General Health & Medical Sciences (AREA)
- Organic Chemistry (AREA)
- Cell Biology (AREA)
- Microbiology (AREA)
- Biotechnology (AREA)
- Medicinal Chemistry (AREA)
- Analytical Chemistry (AREA)
- Physics & Mathematics (AREA)
- Oncology (AREA)
- Food Science & Technology (AREA)
- General Physics & Mathematics (AREA)
- Pathology (AREA)
- Hospice & Palliative Care (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Genetics & Genomics (AREA)
- Wood Science & Technology (AREA)
- Zoology (AREA)
- Gastroenterology & Hepatology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Chemical & Material Sciences (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Biophysics (AREA)
- General Engineering & Computer Science (AREA)
- Crystallography & Structural Chemistry (AREA)
- Materials Engineering (AREA)
- Nanotechnology (AREA)
- Peptides Or Proteins (AREA)
Abstract
Description
技术领域technical field
本发明属于生物医学/抗原检测技术领域,具体涉及一种用于检测糖类抗原的基于志贺毒素B亚基重组蛋白的探针、制备方法。The invention belongs to the technical field of biomedicine/antigen detection, and in particular relates to a Shiga toxin B subunit recombinant protein-based probe and a preparation method for detecting carbohydrate antigens.
背景技术Background technique
糖类抗原是一种肿瘤标志物。糖基化水平和结构的改变是肿瘤细胞的普遍特征,因此某些糖类抗原可以作为标志物用于肿瘤的检测诊断和治疗。糖类抗原不是某种特定种类肿瘤所特有的,不同的糖类抗原在不同的恶性肿瘤中存在特异性,而作为联合标志物应用还可以进一步提高恶性肿瘤诊断的准确率。常见的肿瘤相关糖抗原包括,Gb3、Gb4、Globo-H、GM2、GD2、GD3、Fuc-GM1、LeY、SSEA、forssman等。Carbohydrate antigen is a tumor marker. Changes in glycosylation level and structure are common features of tumor cells, so some carbohydrate antigens can be used as markers for tumor detection, diagnosis and treatment. Carbohydrate antigens are not unique to a specific type of tumor, and different carbohydrate antigens are specific in different malignant tumors, and their application as a combined marker can further improve the accuracy of malignant tumor diagnosis. Common tumor-associated carbohydrate antigens include Gb3, Gb4, Globo-H, GM2, GD2, GD3, Fuc-GM1, LeY, SSEA, forssman, etc.
鞘糖脂Gb3是一种中性的糖类抗原,其结构为Gal1-4Gal1-4Glc-Cer。鞘糖脂Gb3广泛存在于哺乳动物细胞膜表面,在细胞的生长、分化、信号传导等方面起到非常重要的作用。鞘糖脂Gb3的非正常表达会引起机体一系列的病变反应。目前的研究结果表明:鞘糖脂Gb3的过量表达与结肠癌的转移有关,目前发现几乎所有癌细胞转移都伴随着细胞表面糖基化的改变。Glycosphingolipid Gb 3 is a neutral carbohydrate antigen with a structure of Gal1-4Gal1-4Glc-Cer. Glycosphingolipid Gb 3 widely exists on the surface of mammalian cell membrane and plays a very important role in cell growth, differentiation and signal transduction. The abnormal expression of glycosphingolipid Gb 3 can cause a series of pathological reactions in the body. The current research results show that the overexpression of glycosphingolipid Gb 3 is related to the metastasis of colon cancer, and it is found that almost all cancer cell metastasis is accompanied by changes in cell surface glycosylation.
现行对Gb3的检测主要是使用商业化抗Gb3抗体进行蛋白质印迹实验。由于实验周期长、商业化抗体昂贵等原因限制了其应用。The current detection of Gb 3 is mainly by western blotting experiments using commercial anti-Gb 3 antibodies. Its application is limited due to the long experimental period and the expensive commercialization of antibodies.
志贺毒素是志贺氏菌和某些大肠杆菌产生的毒力蛋白因子,可以特异性的结合人体宿主细胞表明的Gb3糖类抗原。志贺毒素是由A亚基蛋白质和B亚基蛋白组成的复合物,A亚基蛋白具有毒力活性,B亚基具有Gb3糖抗原结合活性。志贺毒素包括志贺毒素1和志贺毒素2两种类别。志贺毒素B亚基蛋白包括志贺毒素1B亚基和志贺毒素2B亚基。Shiga toxin is a virulence protein factor produced by Shigella and some Escherichia coli, which can specifically bind to the Gb 3 carbohydrate antigen expressed by human host cells. Shiga toxin is a complex composed of A subunit protein and B subunit protein, A subunit protein has virulence activity, B subunit has Gb 3 carbohydrate antigen binding activity. Shiga toxins include Shiga toxin 1 and Shiga
志贺毒素B亚基的功能是特异性结合Gb3糖类抗原。志贺毒素B亚基单独存在时不具有志贺毒素的毒性活力,但保持了志贺毒素对Gb3糖类抗原的结合特性,因此可以以重组的志贺毒素B亚基蛋白作为Gb3识别单位开发肿瘤细胞Gb3糖类抗原的检测探针。The function of the Shiga toxin B subunit is to specifically bind the Gb 3 carbohydrate antigen. Shiga toxin B subunit does not have the toxic activity of Shiga toxin when it exists alone, but maintains the binding property of Shiga toxin to Gb 3 carbohydrate antigen, so the recombinant Shiga toxin B subunit protein can be recognized as Gb 3 The unit develops detection probes for Gb 3 carbohydrate antigens in tumor cells.
但是,目前尚无有效的利用志贺毒素B亚基制备Gb3的检测探针的相关报道。However, there is no relevant report on the effective use of Shiga toxin B subunit to prepare the detection probe of Gb 3 .
发明内容SUMMARY OF THE INVENTION
发明目的:为了克服现有技术中存在的不足,本发明提供一种用于检测糖类抗原的基于志贺毒素B亚基重组蛋白的探针、制备方法,Purpose of the invention: In order to overcome the deficiencies in the prior art, the present invention provides a probe and a preparation method based on Shiga toxin B subunit recombinant protein for detecting carbohydrate antigens,
技术方案:为实现上述目的,本发明采用的技术方案为:Technical scheme: In order to realize the above-mentioned purpose, the technical scheme adopted in the present invention is:
本发明是一种检测糖类抗原的基于志贺毒素B亚基重组蛋白的探针,首先外源表达志贺毒素B亚基重组蛋白,然后将志贺毒素B亚基重组蛋白与生物素化短肽进行体外酶法融合修饰,得到生物素化志贺毒素B亚基重组蛋白,最后将生物素化志贺毒素B亚基重组蛋白与链霉亲和素标记量子点偶联形成探针。The invention is a probe based on the recombinant protein of Shiga toxin B subunit for detecting carbohydrate antigens. First, the recombinant protein of Shiga toxin B subunit is exogenously expressed, and then the recombinant protein of Shiga toxin B subunit is combined with biotinylated short protein. The peptide was subjected to in vitro enzymatic fusion modification to obtain a biotinylated Shiga toxin B subunit recombinant protein. Finally, the biotinylated Shiga toxin B subunit recombinant protein was coupled with streptavidin-labeled quantum dots to form a probe.
所述的外源表达,包括在原核大肠杆菌E.coli BL21(DE3)中。Said exogenous expression is included in prokaryotic E. coli BL21 (DE3).
本发明的一个目的在于,提供一种用于检测糖类抗原的基于志贺毒素B亚基重组蛋白的探针,该探针由以下两个部分偶联形成:An object of the present invention is to provide a probe for detecting carbohydrate antigens based on Shiga toxin B subunit recombinant protein, the probe is formed by coupling the following two parts:
a、生物素化志贺毒素B亚基重组蛋白,a. Biotinylated Shiga toxin B subunit recombinant protein,
b、链霉亲和素标记量子点;b. Streptavidin-labeled quantum dots;
其中,所述生物素化志贺毒素B亚基重组蛋白由以下组分经体外酶法融合修饰获得:Wherein, the biotinylated Shiga toxin B subunit recombinant protein is obtained by in vitro enzymatic fusion modification of the following components:
c、志贺毒素B亚基重组蛋白,c. Shiga toxin B subunit recombinant protein,
d、生物素化短肽;d. Biotinylated short peptides;
其中,所述志贺毒素B亚基重组蛋白由志贺毒素B亚基蛋白经羧基端修饰获得,所述羧基端修饰为:在所述志贺毒素B亚基蛋白的羧基端修饰Myc标签、转肽酶A识别位点、His标签序列;Wherein, the Shiga toxin B subunit recombinant protein is obtained from Shiga toxin B subunit protein by modifying the carboxyl terminus, and the carboxyl terminus modification is: modifying the Myc tag on the carboxyl terminus of the Shiga toxin B subunit protein, Transpeptidase A recognition site, His tag sequence;
所述志贺毒素B亚基蛋白包括志贺毒素1B亚基蛋白和志贺毒素2B亚基蛋白;The Shiga toxin B subunit protein includes Shiga toxin 1B subunit protein and Shiga toxin 2B subunit protein;
所述生物素化短肽为含有生物素基团的短肽。The biotinylated short peptide is a short peptide containing a biotin group.
进一步的,所述志贺毒素2B亚基重组蛋白的氨基酸序列如SEQ ID No.2所示,编码所述志贺毒素2B亚基重组蛋白的核苷酸序列如SEQ ID No.3所示;所述志贺毒素1B亚基重组蛋白的氨基酸序列如SEQ ID No.6所示,编码所述志贺毒素1B亚基重组蛋白的核苷酸序列如SEQ ID No.7所示。Further, the amino acid sequence of the Shiga toxin 2B subunit recombinant protein is shown in SEQ ID No.2, and the nucleotide sequence encoding the Shiga toxin 2B subunit recombinant protein is shown in SEQ ID No.3; The amino acid sequence of the Shiga toxin 1B subunit recombinant protein is shown in SEQ ID No.6, and the nucleotide sequence encoding the Shiga toxin 1B subunit recombinant protein is shown in SEQ ID No.7.
进一步的,所述生物素化短肽包括短肽和至少一个生物素分子,其中,短肽为含有用于所述酶法融合所需的甘氨酸标签的多肽,也可以为任何对短肽序列进行的改变和增减而具有同样功能的多肽,优选的,本发明实施例选取的其中一种短肽的氨基酸结构组成如SEQ ID No.4所示。所述生物素分子包括任何可以结合链霉亲和素的生物素类似物,如2-亚氨基生物素(2-iminobiotin)。Further, the biotinylated short peptide includes a short peptide and at least one biotin molecule, wherein, the short peptide is a polypeptide containing a glycine tag required for the enzymatic fusion, and can also be any short peptide sequence performed on the short peptide sequence. A polypeptide having the same function by changing and increasing or decreasing it, preferably, the amino acid structure composition of one of the short peptides selected in the embodiment of the present invention is shown in SEQ ID No.4. The biotin molecule includes any biotin analog that can bind to streptavidin, such as 2-iminobiotin.
进一步的,所述体外酶法融合修饰的方法为,以包含Tris、NaCl、CaCl2的pH7.5PBS缓冲液为酶反应体系,在所述酶反应体系中加入志贺毒素B亚基重组蛋白、生物素短肽及转肽酶A,于4-25℃振荡反应1-5h获得所述生物素化志贺毒素B亚基重组蛋白。Further, the method for the in vitro enzymatic fusion modification is to use a pH7.5 PBS buffer containing Tris, NaCl , and CaCl as an enzyme reaction system, and add Shiga toxin B subunit recombinant protein, Biotinylated peptides and transpeptidase A were shaken at 4-25°C for 1-5 hours to obtain the biotinylated Shiga toxin B subunit recombinant protein.
更进一步的,所述酶反应体系中包含50mM Tris、150mM NaCl、5mM CaCl2的pH6.0-8.0PB缓冲液;所述志贺毒素B亚基重组蛋白的浓度为10-50μM,所述生物素短肽的浓度为300-400μM,所述转肽酶A的浓度为2-5μM。Further, the enzyme reaction system comprises pH6.0-8.0PB buffer of 50mM Tris, 150mM NaCl, 5mM CaCl 2 ; the concentration of the Shiga toxin B subunit recombinant protein is 10-50 μM, and the biological The concentration of the short peptide is 300-400 μM, and the concentration of the transpeptidase A is 2-5 μM.
进一步的,所述探针的制备方法为,生物素化志贺毒素B亚基重组蛋白、链霉亲和素标记量子点的偶联探针混合于pH6.0-8.0PBS缓冲液中,4-25℃下避光,振荡反应30min-2h。Further, the preparation method of the probe is as follows: the biotinylated Shiga toxin B subunit recombinant protein and the conjugated probe of streptavidin-labeled quantum dots are mixed in a pH6.0-8.0 PBS buffer, 4 Protect from light at -25°C, and shake the reaction for 30min-2h.
更进一步的,所述生物素化志贺毒素B亚基重组蛋白浓度为1μM;所述链霉亲和素标记量子点的浓度为5-50nM,振荡转速为10-200rpm。Further, the concentration of the biotinylated Shiga toxin B subunit recombinant protein is 1 μM; the concentration of the streptavidin-labeled quantum dots is 5-50 nM, and the oscillation speed is 10-200 rpm.
本发明的另一目的在于,提供一种用于检测糖类抗原的基于志贺毒素B亚基重组蛋白的探针的制备方法,包括以下步骤:Another object of the present invention is to provide a method for preparing a probe based on Shiga toxin B subunit recombinant protein for detecting carbohydrate antigens, comprising the following steps:
1)志贺毒素B亚基重组蛋白的原核表达和纯化;1) Prokaryotic expression and purification of Shiga toxin B subunit recombinant protein;
2)生物素短肽的制备:基于Fmoc法多肽固相合成生物素短肽;2) Preparation of short biotin peptides: solid-phase synthesis of short biotin peptides based on Fmoc method;
3)所述志贺毒素B亚基重组蛋白与生物素化短肽的体外酶法融合修饰,得生物素化志贺毒素B亚基重组蛋白;3) In vitro enzymatic fusion modification of the Shiga toxin B subunit recombinant protein and biotinylated short peptide to obtain a biotinylated Shiga toxin B subunit recombinant protein;
4)所述生物素化志贺毒素B亚基重组蛋白与链霉亲和素标记量子点进行偶联,制备得所述探针。4) The biotinylated Shiga toxin B subunit recombinant protein is coupled with streptavidin-labeled quantum dots to prepare the probe.
本发明的另一目的在于,提供一种用于检测糖类抗原的基于志贺毒素B亚基重组蛋白的探针的应用,用于细胞的糖类抗原的微量检测,所述糖类抗原包括Gb3、Gb4;所述细胞的糖类抗原的微量检测是指,检测细胞中糖类抗原类的肿瘤标志物。Another object of the present invention is to provide an application of a probe based on the recombinant protein of Shiga toxin B subunit for detecting carbohydrate antigens, for the micro-detection of carbohydrate antigens in cells, wherein the carbohydrate antigens include Gb3, Gb4; the micro-detection of carbohydrate antigens in cells refers to the detection of tumor markers of carbohydrate antigens in cells.
进一步的,将该探针与待测细胞于4-37℃静置孵育,离心PBS清洗后,进行流式细胞术检测荧光,激发波长为紫外或蓝光,发射光谱605nm±5nm;其中,所述探针的浓度为5-50nM,所述孵育时间为30min-2h。Further, the probe was incubated with the cells to be tested at 4-37°C, and after centrifugation with PBS, the fluorescence was detected by flow cytometry, the excitation wavelength was ultraviolet or blue light, and the emission spectrum was 605nm±5nm; The concentration of the probe is 5-50 nM, and the incubation time is 30 min-2 h.
有益效果:本发明提供的用于检测糖类抗原的志贺毒素B亚基重组蛋白偶联探针、制备方法,与现有技术相比,具有以下优势:本发明成功构建了基于志贺毒素检测糖类抗原如、Gb4、Globo-H、GM2、GD2、GD3、Fuc-GM1、LeY、SSEA、forssman等,尤其是Gb3的检测方法。该方法具有成本低、方法简便、实验周期短、检测灵敏度高等优点,为其在生物、医学、食品等领域相关指标的检测打下了基础。Beneficial effects: Compared with the prior art, the Shiga toxin B subunit recombinant protein-coupled probe and preparation method provided by the present invention have the following advantages: the present invention has successfully constructed a Shiga toxin-based Detection of carbohydrate antigens such as Gb4, Globo-H, GM2, GD2, GD3, Fuc-GM1, LeY, SSEA, forssman, etc., especially the detection method of Gb 3 . The method has the advantages of low cost, simple method, short experimental period and high detection sensitivity, which lays a foundation for the detection of relevant indicators in the fields of biology, medicine, and food.
附图说明Description of drawings
图1为本技术路线示意图。Figure 1 is a schematic diagram of the technical route.
图2是志贺毒素2B亚基重组蛋白纯化流程中关键参数检测图;Fig. 2 is the detection chart of key parameters in the purification process of Shiga toxin 2B subunit recombinant protein;
图3是SDS-PAGE图;泳道M为标准蛋白样品,泳道1为纯化后的志贺毒素2B亚基重组蛋白Stx2B-His。Figure 3 is an SDS-PAGE graph; lane M is the standard protein sample,
图4是SDS-PAGE图;泳道M为标准蛋白样品,泳道1为纯化后的志贺毒素2B亚基重组蛋白Stx2B-His,泳道2为纯化后的生物素化修饰的志贺毒素2B亚基重组蛋白Stx2B-biotin。Figure 4 is an SDS-PAGE graph; lane M is the standard protein sample,
图5为流式细胞术分析量子点修饰的志贺毒素2B亚基重组蛋白检测K562细胞(人 髓性白血病细胞)表面的糖类抗原Gb3的能力。实验中以PBS作为空白对照NC,设置250nM和500nM两个浓度梯度。A为流式位移图,B为平均荧光强度柱状图(n=3,p<0.05)。Figure 5 is a flow cytometry analysis of the ability of the quantum dot-modified Shiga toxin 2B subunit recombinant protein to detect the carbohydrate antigen Gb 3 on the surface of K562 cells (human myeloid leukemia cells) . In the experiment, PBS was used as the blank control NC, and two concentration gradients of 250 nM and 500 nM were set. A is the flow shift diagram, and B is the histogram of the mean fluorescence intensity (n=3, p<0.05).
图6为流式细胞术分析量子点修饰的志贺毒素2B亚基重组蛋白检测Raji细胞(人 淋巴瘤细胞)表面的糖类抗原Gb3的能力。实验中以PBS作为空白对照,设置250nM和500nM两个浓度梯度。A为流式位移图,B为平均荧光强度柱状图(n=3,p<0.05)。Figure 6 is a flow cytometry analysis of the ability of the quantum dot-modified Shiga toxin 2B subunit recombinant protein to detect the carbohydrate antigen Gb 3 on the surface of Raji cells (human lymphoma cells) . In the experiment, PBS was used as a blank control, and two concentration gradients of 250 nM and 500 nM were set. A is the flow shift diagram, and B is the histogram of the mean fluorescence intensity (n=3, p<0.05).
图7为流式细胞术分析量子点修饰的志贺毒素2B亚基重组蛋白检测Caco-2细胞 (人克隆结肠腺癌细胞)表面的糖类抗原Gb3的能力。实验中以PBS作为空白对照,设置250nM和500nM两个浓度梯度。A为流式位移图,B为平均荧光强度柱状图(n=3,p<0.05)。Figure 7 is a flow cytometry analysis of the ability of the quantum dot-modified Shiga toxin 2B subunit recombinant protein to detect the carbohydrate antigen Gb 3 on the surface of Caco-2 cells (human cloned colon adenocarcinoma cells) . In the experiment, PBS was used as a blank control, and two concentration gradients of 250 nM and 500 nM were set. A is the flow shift diagram, and B is the histogram of the mean fluorescence intensity (n=3, p<0.05).
图8为流式细胞术分析量子点修饰的志贺毒素2B亚基重组蛋白检测HT-29细胞(人 结直肠腺癌细胞)表面的糖类抗原Gb3的能力。实验中以PBS作为空白对照,设置250nM和500nM两个浓度梯度。A为流式位移图,B为平均荧光强度柱状图(n=3,p<0.05)。Figure 8 is a flow cytometry analysis of the ability of quantum dot-modified Shiga toxin 2B subunit recombinant protein to detect carbohydrate antigen Gb 3 on the surface of HT-29 cells (human colorectal adenocarcinoma cells) . In the experiment, PBS was used as a blank control, and two concentration gradients of 250 nM and 500 nM were set. A is the flow shift diagram, and B is the histogram of the mean fluorescence intensity (n=3, p<0.05).
具体实施方式Detailed ways
本发明属于生物医学及抗原检测技术领域,具体涉及一种检测糖类抗原的基于志贺毒素B亚基重组蛋白的探针、制备方法,如图1所示,制备本发明的探针包括步骤:The invention belongs to the technical field of biomedicine and antigen detection, and in particular relates to a probe based on Shiga toxin B subunit recombinant protein for detecting carbohydrate antigens, and a preparation method. As shown in FIG. 1 , the preparation of the probe of the present invention includes steps :
a、志贺毒素B亚基重组蛋白的原核表达和纯化;a. Prokaryotic expression and purification of Shiga toxin B subunit recombinant protein;
b、含有生物素基团短肽的制备:基于Fmoc法多肽固相合成生物素短肽;b. Preparation of short peptides containing biotin groups: solid-phase synthesis of biotin short peptides based on Fmoc method;
c、上述重组蛋白与生物素化短肽的体外酶法融合修饰;c. In vitro enzymatic fusion modification of the above recombinant protein and biotinylated short peptide;
d、生物素化志贺毒素B亚基重组蛋白与链霉亲和素标记量子点的偶联探针制备。d. Preparation of conjugated probes of biotinylated Shiga toxin B subunit recombinant protein and streptavidin-labeled quantum dots.
其中,制备上述志贺毒素B亚基重组蛋白的方法,步骤如下:Wherein, the method for preparing the above-mentioned Shiga toxin B subunit recombinant protein, the steps are as follows:
1)设计目的基因序列,在其羧基端加入MYC标签、转肽酶A(Sortase A)识别位点、His标签。1) Design the target gene sequence, add MYC tag, transpeptidase A (Sortase A) recognition site and His tag to its carboxyl terminus.
2)利用大肠杆菌表达目的基因片段;2) using Escherichia coli to express the target gene fragment;
3)采用镍柱纯化得到目的蛋白;3) using nickel column purification to obtain the target protein;
4)将目标蛋白与带有生物素基团的短肽在转肽酶A的催化作用下进行连接;4) linking the target protein with a short peptide with a biotin group under the catalysis of transpeptidase A;
5)镍柱纯化得到带有生物素化的目的蛋白。5) The target protein with biotinylation is obtained by nickel column purification.
本发明所述的探针,结合流式细胞术能够有效检测多种肿瘤细胞表面糖类抗原尤其如Gb3的表达,可以应用于以Gb3等糖类抗原为肿瘤标志物的检测和诊断。所述糖类抗原检测方法,制备成本低、检测专一性强、灵敏度高。The probe of the present invention, combined with flow cytometry, can effectively detect the expression of various tumor cell surface carbohydrate antigens, especially Gb3, and can be applied to the detection and diagnosis of Gb3 and other carbohydrate antigens as tumor markers. The carbohydrate antigen detection method has the advantages of low preparation cost, strong detection specificity and high sensitivity.
下面结合附图和实施例对本发明作更进一步的说明。但应当理解这些实施例并非限制本发明的范围。The present invention will be further described below with reference to the accompanying drawings and embodiments. It should be understood, however, that these examples do not limit the scope of the invention.
实施例Example
实施例选用志贺毒素2B亚基重组蛋白与Gb3作为示例说明。The embodiment uses Shiga toxin 2B subunit recombinant protein and Gb3 as examples.
根据下述实施例,可以更好的理解本发明。然而,本领域的技术人员容易理解,实施例所描述的具体的物料配比、工艺条件及其结果仅用于说明本发明,而不应当也不会限制权利要求书中所详细描述的本发明。The present invention can be better understood from the following examples. However, those skilled in the art can easily understand that the specific material ratios, process conditions and results described in the examples are only used to illustrate the present invention, and should not and will not limit the present invention described in detail in the claims. .
在本发明中所使用的术语,除非另有说明,一般具有本领域普通技术人员通常理解的含义。Terms used in the present invention generally have the meanings commonly understood by those of ordinary skill in the art unless otherwise specified.
在以下实施例中,未详细描述的各种过程和方法是本领域中公知的常规方法。In the following examples, various procedures and methods not described in detail are conventional methods well known in the art.
实施例1志贺毒素2B亚基重组蛋白序列的设计Example 1 Design of the recombinant protein sequence of Shiga toxin 2B subunit
查找志贺毒素2B亚基蛋白质序列(GenBank ID:AAD25446.1,SEQ ID No.1),对其羧基端进行修饰。首先,在志贺毒素2B亚基蛋白质的序列羧基末端加入MYC标签(EQKLISEEDLNGAA)、转肽酶A酶切的识别位点LPETGG(L:亮氨酸;P:脯氨酸;E:谷氨酸;T:苏氨酸;G:甘氨酸);然后再加入组氨酸纯化标签His即HHHHHH(H:组氨酸),将该重组蛋白命名为Stx2B-His,其氨基酸序列如SEQ ID No.2所示。Find the protein sequence of Shiga toxin 2B subunit (GenBank ID: AAD25446.1, SEQ ID No. 1), and modify its carboxyl terminus. First, a MYC tag (EQKLISEEDLNGAA) and a recognition site LPETGG (L: leucine; P: proline; E: glutamic acid) for cleavage by transpeptidase A were added to the carboxyl terminus of the Shiga toxin 2B subunit protein. ; T: threonine; G: glycine); then add histidine purification tag His, namely HHHHHH (H: histidine), the recombinant protein is named Stx2B-His, and its amino acid sequence is as SEQ ID No.2 shown.
设计好蛋白质序列后,将蛋白质序列交于商业化公司进行密码子优化。将优化后的基因序列(SEQ ID No.3)插入pET22b(+)质粒中,并将该质粒转入大肠杆菌E.coli BL21(DE3)。该菌株即为含有目标基因的发酵菌株。After the protein sequence is designed, the protein sequence is handed over to a commercial company for codon optimization. The optimized gene sequence (SEQ ID No. 3) was inserted into the pET22b(+) plasmid, and the plasmid was transformed into E. coli BL21 (DE3). This strain is a fermentation strain containing the target gene.
实施例2志贺毒素2B亚基重组蛋白的表达与纯化Example 2 Expression and purification of Shiga toxin 2B subunit recombinant protein
取20μL含重组蛋白Stx2B-His甘油菌至3mL氨苄抗性的LB培养基(蛋白胨10g/L,酵母粉5g/L,氯化钠10g/L),37℃,200rpm过夜培养,第二天按照4%的接种量转接TB发酵培养基(蛋白胨12g/L,酵母粉24g/L,甘油4g/L,KH2PO4 23.1g/L,K2HPO4 125.4g/L),待菌浓达到OD600为0.6-1.2之后,加入终浓度为0.4mM的诱导剂IPTG进行诱导,蛋白表达的条件为20℃,200rpm,表达时间为24h。外源表达可在原核大肠杆菌E.coli BL21(DE3)中进行。Take 20 μL of glycerol bacteria containing recombinant protein Stx2B-His to 3 mL of ampicillin-resistant LB medium (peptone 10g/L, yeast powder 5g/L, sodium chloride 10g/L), 37 ℃, 200rpm overnight culture, the next day according to 4% of the inoculum was transferred to TB fermentation medium (peptone 12g/L, yeast powder 24g/L, glycerol 4g/L, KH 2 PO 4 23.1g/L, K 2 HPO 4 125.4g/L). After reaching an OD 600 of 0.6-1.2, the inducer IPTG with a final concentration of 0.4 mM was added for induction. The conditions of protein expression were 20 °C, 200 rpm, and the expression time was 24 h. Exogenous expression can be performed in prokaryotic E. coli BL21 (DE3).
发酵完毕后,9000rpm离心5min收集菌体,弃置上清。菌体用破壁缓冲液(10mMTris,500mM NaCl,pH8.0)重悬后,用超声破碎仪进行破碎,破碎条件为:冰浴,运行2s,停3s,运行时长20min。破碎完毕后,9000rpm离心10min,重复三次,以彻底除去细胞碎片,得到澄清的破壁上清。破壁上清先在4℃环境下与镍柱孵育2-4h,然后用含25mM咪洗涤镍柱以去除杂蛋白。用含25mM-500mM咪唑的破壁缓冲液梯度将重组蛋白Stx2B-His洗下。纯化后的蛋白经脱盐后冻干,置于-20℃备用。After fermentation, the cells were collected by centrifugation at 9000 rpm for 5 min, and the supernatant was discarded. The cells were resuspended in wall-breaking buffer (10 mM Tris, 500 mM NaCl, pH 8.0), and then disrupted with an ultrasonic crusher. The crushing conditions were: ice bath, running for 2 s, stopping for 3 s, and running for 20 min. After the fragmentation was completed, centrifugation at 9000 rpm for 10 min was repeated three times to completely remove cell debris to obtain a clear fragmented supernatant. The broken supernatant was incubated with the nickel column for 2-4 h at 4°C, and then the nickel column was washed with 25mM imidium to remove impurity proteins. The recombinant protein Stx2B-His was washed down with a gradient of wall breaking buffer containing 25mM-500mM imidazole. The purified protein was desalted, lyophilized, and kept at -20°C for later use.
图2为重组蛋白纯化过程中的关键参数检测图。图3为纯化后的重组蛋白SDS-PAGE图,经Image J软件灰度分析表明,纯化后的Stx2B-His的纯度在95%以上。Figure 2 is a diagram showing the detection of key parameters in the process of recombinant protein purification. Figure 3 is the SDS-PAGE image of the purified recombinant protein. The grayscale analysis of Image J software shows that the purity of the purified Stx2B-His is above 95%.
实施例3志贺毒素2B亚基重组蛋白的生物素化修饰与纯化Example 3 Biotinylation modification and purification of Shiga toxin 2B subunit recombinant protein
酶反应体系为50mM Tris,150mM NaCl,5mM CaCl2缓冲液,pH7.5PBS缓冲液,志贺毒素2B亚基重组蛋白底物浓度为20μM,生物素短肽的浓度为400μM,转肽酶A终浓度为5Μm,其中,生物素短肽所用的短肽为含有用于所述酶法融合所需的甘氨酸标签的多肽。反应条件为16℃,200rpm,2h。反应完成后,利用镍柱纯化所得蛋白。使用1x PBS缓冲液冲洗镍柱,收集流穿液。对流穿的蛋白经脱盐后冻干,置于-20℃备用,命名该蛋白为Stx2B-biotin。The enzyme reaction system was 50 mM Tris, 150 mM NaCl, 5 mM CaCl 2 buffer, pH 7.5 PBS buffer, the concentration of Shiga toxin 2B subunit recombinant protein substrate was 20 μM, the concentration of biotin short peptide was 400 μM, and the final concentration of transpeptidase A was The concentration was 5 μM, wherein the short peptide used for the biotin short peptide was a polypeptide containing a glycine tag required for the enzymatic fusion. The reaction conditions were 16°C, 200rpm, 2h. After the reaction was completed, the resulting protein was purified using a nickel column. Rinse the nickel column with 1x PBS buffer and collect the flow-through. The flow-through protein was desalted, lyophilized, and placed at -20°C for use. The protein was named Stx2B-biotin.
图4中的SDS-PAGE结果分析表明,Stx2B-biotin较Stx2B-His分子量有明显变化,且纯化后的Stx2B-biotin的纯度在95%以上。The analysis of the SDS-PAGE results in Figure 4 shows that the molecular weight of Stx2B-biotin is significantly changed compared with that of Stx2B-His, and the purity of the purified Stx2B-biotin is above 95%.
实施例4链霉亲和素标记量子点的偶联探针修饰生物素化志贺毒素2B亚基重组蛋白Example 4 Biotinylated Shiga toxin 2B subunit recombinant protein modified by conjugated probe of streptavidin-labeled quantum dots
量子点修饰体系为1x PBS溶液,pH7.0;Stx2B-biotin浓度为1μM,链霉亲和素标记的量子点浓度为20nM。反应条件为室温,避光,50rpm,避光2h。反应完成后,无需纯化,直接用于后续实验;本步产物也可分装。2-8℃保存。The quantum dot modification system was 1x PBS solution, pH 7.0; the concentration of Stx2B-biotin was 1 μM, and the concentration of streptavidin-labeled quantum dots was 20 nM. The reaction conditions were room temperature, protected from light, 50 rpm, and protected from light for 2 h. After the reaction is completed, it is directly used in subsequent experiments without purification; the product of this step can also be packaged. Store at 2-8°C.
实施例5量子点标记的志贺毒素2B亚基重组蛋白用于细胞表面糖类抗原Gb3的检测Example 5 Quantum dot-labeled Shiga toxin 2B subunit recombinant protein is used for the detection of cell surface carbohydrate antigen Gb3
6孔板内接种对数生长期的待测细胞,培养24小时;重悬后收集每孔细胞于单支的流式管内,离心去上清,PBS洗涤细胞2次,每管中加入100μL上述制备的量子点修饰的重组Ⅱ型志贺毒素2B亚基,构成浓度为20nM的探针;4℃,静置孵育30min;离心去除上清,PBS洗涤细胞2次,离心5min;每管加入200μL PBS重悬细胞,上机检测。The cells to be tested in the logarithmic growth phase were inoculated into 6-well plates and cultured for 24 hours; after resuspending, the cells in each well were collected in a single flow tube, centrifuged to remove the supernatant, and the cells were washed twice with PBS, and 100 μL of the above-mentioned cells were added to each tube. The prepared quantum dot-modified recombinant type II Shiga toxin 2B subunit constitutes a probe with a concentration of 20 nM; incubate at 4°C for 30 min; remove the supernatant by centrifugation, wash the cells twice with PBS, and centrifuge for 5 min; add 200 μL to each tube Cells were resuspended in PBS and detected on the machine.
图5、图6、图7及图8分析表明,对于阴性细胞群K562细胞,没有明显的位移和平均荧光强度差异;对于阳性细胞群Raji、Caco-2、HT-29细胞,较PBS对照,其位移及平均荧光强度有明显变化,且可以看出浓度梯度,表明本实施例可以达到上述目的。同时由于量子点优秀的发光特性,其背景较低、发射光谱窄而对称。The analysis of Figure 5, Figure 6, Figure 7 and Figure 8 shows that for the negative cell group K562 cells, there is no obvious shift and average fluorescence intensity difference; for the positive cell group Raji, Caco-2, HT-29 cells, compared with the PBS control, The displacement and the average fluorescence intensity have obvious changes, and the concentration gradient can be seen, indicating that this embodiment can achieve the above purpose. At the same time, due to the excellent luminescence properties of quantum dots, the background is low, and the emission spectrum is narrow and symmetrical.
以上实施例说明,志贺毒素2B亚基重组蛋白,可特异性与细胞膜上表面鞘糖脂Gb3受体结合;同时结合流式细胞术,最快可以在1h内完成细胞筛查,大大节省了实验所需时间。同理可知,该实施例同样适用于与志贺毒素2B亚基蛋白具有完全相同功能的志贺毒素1B亚基蛋白,制备成基于志贺毒素1B亚基重组蛋白的偶联探针。同理,该实施例也适用于细胞膜上的其他糖类抗原,如与结构、功能均类似的Gb4,以及其他糖类抗原如Globo-H、GM2、GD2、GD3、Fuc-GM1、LeY、SSEA、forssman等。The above example shows that the recombinant protein of Shiga toxin 2B subunit can specifically bind to the glycosphingolipid Gb 3 receptor on the surface of the cell membrane; at the same time, combined with flow cytometry, the cell screening can be completed within 1 hour at the fastest, saving a lot of money time required for the experiment. Similarly, this example is also applicable to Shiga toxin 1B subunit protein which has the same function as Shiga toxin 2B subunit protein to prepare a coupled probe based on Shiga toxin 1B subunit recombinant protein. Similarly, this embodiment is also applicable to other carbohydrate antigens on the cell membrane, such as Gb4 which is similar in structure and function, and other carbohydrate antigens such as Globo-H, GM2, GD2, GD3, Fuc-GM1, LeY, SSEA , Forssman et al.
实施例6链霉亲和素标记量子点的偶联探针修饰生物素化的志贺毒素1B亚基重组蛋白Example 6 Conjugated probe of streptavidin-labeled quantum dots Modified biotinylated Shiga toxin 1B subunit recombinant protein
贺毒素1B亚基重组蛋白序列的设计、志贺毒素1B亚基重组蛋白的表达与纯化、志贺毒素1B亚基重组蛋白的生物素化修饰与纯化,同实施例1、2、3,其中,志贺毒素1B亚基蛋白的氨基酸序列如SEQ ID No.5所示,志贺毒素1B亚基重组蛋白的氨基酸序列如SEQ IDNo.6所示,编码该志贺毒素1B亚基重组蛋白的核苷酸序列如SEQ ID No.7所示;短肽同为如SEQ ID No.4所示。The design of the recombinant protein sequence of Shiga toxin 1B subunit, the expression and purification of the recombinant protein of Shiga toxin 1B subunit, and the biotinylation modification and purification of the recombinant protein of Shiga toxin 1B subunit, the same as in Examples 1, 2, and 3, wherein , the amino acid sequence of Shiga toxin 1B subunit protein is shown in SEQ ID No. 5, the amino acid sequence of Shiga toxin 1B subunit recombinant protein is shown in SEQ ID No. 6, and the protein encoding the Shiga toxin 1B subunit recombinant protein is shown in SEQ ID No. 6. The nucleotide sequence is shown in SEQ ID No.7; the short peptide is also shown in SEQ ID No.4.
量子点修饰方法同实施例4,获得的探针用于细胞表面糖类抗原如Gb3、Gb4的检测。The quantum dot modification method is the same as that in Example 4, and the obtained probe is used for the detection of cell surface carbohydrate antigens such as Gb3 and Gb4.
以上所述仅是本发明的优选实施方式,应当指出:对于本技术领域的普通技术人员来说,在不脱离本发明原理的前提下,还可以做出若干改进和润饰,这些改进和润饰也应视为本发明的保护范围。The above is only the preferred embodiment of the present invention, it should be pointed out that: for those skilled in the art, without departing from the principle of the present invention, several improvements and modifications can also be made, and these improvements and modifications are also It should be regarded as the protection scope of the present invention.
序列表 sequence listing
<110> 江南大学<110> Jiangnan University
<120> 一种检测糖类抗原的基于志贺毒素B亚基重组蛋白的探针、制备方法<120> A probe and preparation method based on Shiga toxin B subunit recombinant protein for detecting carbohydrate antigens
<160> 7<160> 7
<170> SIPOSequenceListing 1.0<170> SIPOSequenceListing 1.0
<210> 1<210> 1
<211> 70<211> 70
<212> PRT<212> PRT
<213> 志贺毒素2B亚基蛋白()<213> Shiga toxin 2B subunit protein ()
<400> 1<400> 1
Ala Asp Cys Ala Lys Gly Lys Ile Glu Phe Ser Lys Tyr Asn Glu AspAla Asp Cys Ala Lys Gly Lys Ile Glu Phe Ser Lys Tyr Asn Glu Asp
1 5 10 151 5 10 15
Asp Thr Phe Thr Val Lys Val Asp Gly Lys Glu Tyr Trp Thr Ser ArgAsp Thr Phe Thr Val Lys Val Asp Gly Lys Glu Tyr Trp Thr Ser Arg
20 25 30 20 25 30
Trp Asn Leu Gln Pro Leu Leu Gln Ser Ala Gln Leu Thr Gly Met ThrTrp Asn Leu Gln Pro Leu Leu Gln Ser Ala Gln Leu Thr Gly Met Thr
35 40 45 35 40 45
Val Thr Ile Lys Ser Ser Thr Cys Glu Ser Gly Ser Gly Phe Ala GluVal Thr Ile Lys Ser Ser Thr Cys Glu Ser Gly Ser Gly Phe Ala Glu
50 55 60 50 55 60
Val Gln Phe Asn Asn AspVal Gln Phe Asn Asn Asp
65 7065 70
<210> 2<210> 2
<211> 96<211> 96
<212> PRT<212> PRT
<213> 志贺毒素2B亚基重组蛋白()<213> Shiga toxin 2B subunit recombinant protein ()
<400> 2<400> 2
Ala Asp Cys Ala Lys Gly Lys Ile Glu Phe Ser Lys Tyr Asn Glu AspAla Asp Cys Ala Lys Gly Lys Ile Glu Phe Ser Lys Tyr Asn Glu Asp
1 5 10 151 5 10 15
Asp Thr Phe Thr Val Lys Val Asp Gly Lys Glu Tyr Trp Thr Ser ArgAsp Thr Phe Thr Val Lys Val Asp Gly Lys Glu Tyr Trp Thr Ser Arg
20 25 30 20 25 30
Trp Asn Leu Gln Pro Leu Leu Gln Ser Ala Gln Leu Thr Gly Met ThrTrp Asn Leu Gln Pro Leu Leu Gln Ser Ala Gln Leu Thr Gly Met Thr
35 40 45 35 40 45
Val Thr Ile Lys Ser Ser Thr Cys Glu Ser Gly Ser Gly Phe Ala GluVal Thr Ile Lys Ser Ser Thr Cys Glu Ser Gly Ser Gly Phe Ala Glu
50 55 60 50 55 60
Val Gln Phe Asn Asn Asp Glu Gln Lys Leu Ile Ser Glu Glu Asp LeuVal Gln Phe Asn Asn Asp Glu Gln Lys Leu Ile Ser Glu Glu Asp Leu
65 70 75 8065 70 75 80
Asn Gly Ala Ala Leu Pro Glu Thr Gly Gly His His His His His HisAsn Gly Ala Ala Leu Pro Glu Thr Gly Gly His His His His His His
85 90 95 85 90 95
<210> 3<210> 3
<211> 288<211> 288
<212> DNA<212> DNA
<213> 志贺毒素2B亚基重组蛋白()<213> Shiga toxin 2B subunit recombinant protein ()
<400> 3<400> 3
gctgattgtg caaaaggtaa aattgaattt tccaagtaca acgaagacga tacctttacc 60gctgattgtg caaaaggtaa aattgaattt tccaagtaca acgaagacga tacctttacc 60
gttaaagtgg atggcaaaga atattggacc agccgctgga atctgcagcc gctgctgcag 120gttaaagtgg atggcaaaga atattggacc agccgctgga atctgcagcc gctgctgcag 120
agcgcacagc tgaccggtat gaccgttacc attaagagca gcacctgcga aagcggtagc 180agcgcacagc tgaccggtat gaccgttacc attaagagca gcacctgcga aagcggtagc 180
ggctttgccg aagttcagtt taataatgat gaacagaagc tgattagcga agaagatctg 240ggctttgccg aagttcagtt taataatgat gaacagaagc tgattagcga agaagatctg 240
aatggtgccg cactgccgga aaccggtggt catcatcatc atcaccat 288aatggtgccg cactgccgga aaccggtggt catcatcatc atcaccat 288
<210> 4<210> 4
<211> 11<211> 11
<212> PRT<212> PRT
<213> 短肽()<213> short peptide ()
<400> 4<400> 4
Gly Gly Gly Ala Gly Ala Gly Ala Gly Ala LysGly Gly Gly Ala Gly Ala Gly Ala Gly Ala Lys
1 5 101 5 10
<210> 5<210> 5
<211> 69<211> 69
<212> PRT<212> PRT
<213> 志贺毒素1B亚基蛋白()<213> Shiga toxin 1B subunit protein ()
<400> 5<400> 5
Thr Pro Asp Cys Val Thr Gly Lys Val Glu Tyr Thr Lys Tyr Asn AspThr Pro Asp Cys Val Thr Gly Lys Val Glu Tyr Thr Lys Tyr Asn Asp
1 5 10 151 5 10 15
Asp Asp Thr Phe Thr Val Lys Val Gly Asp Lys Glu Leu Phe Thr AsnAsp Asp Thr Phe Thr Val Lys Val Gly Asp Lys Glu Leu Phe Thr Asn
20 25 30 20 25 30
Arg Trp Asn Leu Gln Ser Leu Leu Leu Ser Ala Gln Ile Thr Gly MetArg Trp Asn Leu Gln Ser Leu Leu Leu Ser Ala Gln Ile Thr Gly Met
35 40 45 35 40 45
Thr Val Thr Ile Lys Thr Asn Ala Cys His Asn Gly Gly Gly Phe SerThr Val Thr Ile Lys Thr Asn Ala Cys His Asn Gly Gly Gly Phe Ser
50 55 60 50 55 60
Glu Val Ile Phe ArgGlu Val Ile Phe Arg
6565
<210> 6<210> 6
<211> 95<211> 95
<212> PRT<212> PRT
<213> 志贺毒素1B亚基重组蛋白()<213> Shiga toxin 1B subunit recombinant protein ()
<400> 6<400> 6
Thr Pro Asp Cys Val Thr Gly Lys Val Glu Tyr Thr Lys Tyr Asn AspThr Pro Asp Cys Val Thr Gly Lys Val Glu Tyr Thr Lys Tyr Asn Asp
1 5 10 151 5 10 15
Asp Asp Thr Phe Thr Val Lys Val Gly Asp Lys Glu Leu Phe Thr AsnAsp Asp Thr Phe Thr Val Lys Val Gly Asp Lys Glu Leu Phe Thr Asn
20 25 30 20 25 30
Arg Trp Asn Leu Gln Ser Leu Leu Leu Ser Ala Gln Ile Thr Gly MetArg Trp Asn Leu Gln Ser Leu Leu Leu Ser Ala Gln Ile Thr Gly Met
35 40 45 35 40 45
Thr Val Thr Ile Lys Thr Asn Ala Cys His Asn Gly Gly Gly Phe SerThr Val Thr Ile Lys Thr Asn Ala Cys His Asn Gly Gly Gly Phe Ser
50 55 60 50 55 60
Glu Val Ile Phe Arg Glu Gln Lys Leu Ile Ser Glu Glu Asp Leu AsnGlu Val Ile Phe Arg Glu Gln Lys Leu Ile Ser Glu Glu Asp Leu Asn
65 70 75 8065 70 75 80
Gly Ala Ala Leu Pro Glu Thr Gly Gly His His His His His HisGly Ala Ala Leu Pro Glu Thr Gly Gly His His His His His His
85 90 95 85 90 95
<210> 7<210> 7
<211> 285<211> 285
<212> DNA<212> DNA
<213> 志贺毒素1B亚基重组蛋白()<213> Shiga toxin 1B subunit recombinant protein ()
<400> 7<400> 7
acccctgatt gcgtgaccgg caaagtggaa tataccaaat ataatgatga cgataccttc 60acccctgatt gcgtgaccgg caaagtggaa tataccaaat ataatgatga cgataccttc 60
accgtgaaag tgggcgataa agaactgttt accaatcgtt ggaatctgca gagtctgctg 120accgtgaaag tgggcgataa agaactgttt accaatcgtt ggaatctgca gagtctgctg 120
ctgagtgccc agattaccgg tatgaccgtg accattaaga ccaatgcatg tcataatggc 180ctgagtgccc agattaccgg tatgaccgtg accattaaga ccaatgcatg tcataatggc 180
ggtggcttta gcgaagtgat ttttcgtgaa cagaaactga ttagcgaaga agatctgaat 240ggtggcttta gcgaagtgat ttttcgtgaa cagaaactga ttagcgaaga agatctgaat 240
ggtgcagcac tgccggaaac cggtggccat catcatcatc accat 285ggtgcagcac tgccggaaac cggtggccat catcatcatc accat 285
Claims (7)
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN202110338813.1A CN113087807B (en) | 2021-03-30 | 2021-03-30 | Shiga toxin B subunit recombinant protein-based probe for detecting carbohydrate antigen and preparation method thereof |
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN202110338813.1A CN113087807B (en) | 2021-03-30 | 2021-03-30 | Shiga toxin B subunit recombinant protein-based probe for detecting carbohydrate antigen and preparation method thereof |
Publications (2)
Publication Number | Publication Date |
---|---|
CN113087807A CN113087807A (en) | 2021-07-09 |
CN113087807B true CN113087807B (en) | 2022-06-17 |
Family
ID=76670885
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CN202110338813.1A Active CN113087807B (en) | 2021-03-30 | 2021-03-30 | Shiga toxin B subunit recombinant protein-based probe for detecting carbohydrate antigen and preparation method thereof |
Country Status (1)
Country | Link |
---|---|
CN (1) | CN113087807B (en) |
Citations (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN106018804A (en) * | 2016-06-27 | 2016-10-12 | 杨国林 | Kit for detecting shiga-toxigenic escherichia coli in food |
CN107541504A (en) * | 2016-06-24 | 2018-01-05 | 江南大学 | A kind of method using transpeptidase Sortase A modified proteins |
Family Cites Families (6)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
US5955293A (en) * | 1989-10-17 | 1999-09-21 | New England Medical Center Hospitals, Inc. | Assays for shiga toxin and shiga-like toxins |
CN101363848B (en) * | 2008-09-24 | 2013-05-29 | 深圳市菲鹏生物股份有限公司 | Double antigen sandwich method for detecting antibody by indirectly marked nanometer granule and kit thereof |
CN108414766A (en) * | 2018-01-29 | 2018-08-17 | 上海良润生物医药科技有限公司 | Kit for quantitatively detecting diabetes autoantibody and its application |
CN211505565U (en) * | 2020-02-04 | 2020-09-15 | 江苏省疾病预防控制中心(江苏省公共卫生研究院) | Quantum dot-labeled rapid immunochromatographic test strip for detecting type I Shiga toxin |
CN111593080B (en) * | 2020-05-14 | 2022-06-10 | 武汉糖智药业有限公司 | A kind of α-galactose antigenic active precursor and its synthesis method and application |
CN113777295B (en) * | 2021-09-15 | 2024-03-19 | 江南大学 | High-sensitivity quantum dot probe for detecting tumor marker PD-L1, preparation method and application |
-
2021
- 2021-03-30 CN CN202110338813.1A patent/CN113087807B/en active Active
Patent Citations (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN107541504A (en) * | 2016-06-24 | 2018-01-05 | 江南大学 | A kind of method using transpeptidase Sortase A modified proteins |
CN106018804A (en) * | 2016-06-27 | 2016-10-12 | 杨国林 | Kit for detecting shiga-toxigenic escherichia coli in food |
Non-Patent Citations (2)
Title |
---|
NCBI.Shiga toxin Stx2 subunit B [Escherichia coli].《Genbank database》.2020, * |
NCBI.TPA: Shiga toxin Stx1 subunit B [Escherichia coli].《Genbank database》.2020, * |
Also Published As
Publication number | Publication date |
---|---|
CN113087807A (en) | 2021-07-09 |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
CN109627344B (en) | cAMP fluorescent probe and application thereof | |
CN113777295B (en) | High-sensitivity quantum dot probe for detecting tumor marker PD-L1, preparation method and application | |
CN114380920B (en) | Human alpha fetoprotein fusion protein, and preparation method and application thereof | |
EP2493913B1 (en) | High stability streptavidin mutant proteins | |
CN108314710B (en) | Mycoplasma pneumoniae recombinant antigen and application thereof | |
CN101570756B (en) | New-type label protein and application thereof | |
KR20180087431A (en) | FKBP domain having a transglutaminase recognition site | |
CN117062828A (en) | Polypeptides interacting with peptide tags at the loop or terminal and uses thereof | |
CN114057861B (en) | A bio-PROTAC artificial protein targeting UBE2C | |
US12103980B2 (en) | Development of recombinant chicken IGY SCFV antibody raised against human thymidine kinase 1 expressed in prokaryotic cells and use thereof | |
CN113087807B (en) | Shiga toxin B subunit recombinant protein-based probe for detecting carbohydrate antigen and preparation method thereof | |
JP2013527752A (en) | HPV antibody screening method using fusion polypeptide HPV antigen | |
JP2006340717A (en) | Method for evaluating bondability to g protein-coupled receptor and composition for evaluation, fused protein, and gene | |
CN110078832B (en) | A kind of secondary antibody based on ZZ domain and its preparation method and application | |
CN100489101C (en) | G-eGFP protein, preparation method, and application | |
WO2024032020A1 (en) | Enhanced monomeric staygold protein and use thereof | |
KR100843634B1 (en) | Cell Permeation Delivery Peptide and Biologics Comprising the Same | |
CN110128540B (en) | A secondary antibody based on a portable blood glucose meter | |
Cao et al. | Construction and characterization of an enhanced GFP-tagged anti-BAFF scFv antibody | |
CN110724202A (en) | ADAMTS13 substrate with histidine tag as well as preparation method and application thereof | |
Petrovskaya et al. | Fluorescent fusion proteins derived from the tenth human fibronectin domain | |
WO2014193176A1 (en) | Methionyl trna synthetase for biosynthesis of photomethionine-labeled protein and method for preparing photoactive protein g variant using same | |
CN101906420B (en) | Human filaggrin gene prokaryotic expression system and application of expressed protein | |
WO2023058762A1 (en) | Fluorescent vhh antibody | |
KR101505697B1 (en) | Membrane protein expression vector comprising major envelope protein p9 of systovirus phi12 as a fusion partner and method for producing membrane protein using the same |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
PB01 | Publication | ||
PB01 | Publication | ||
SE01 | Entry into force of request for substantive examination | ||
SE01 | Entry into force of request for substantive examination | ||
GR01 | Patent grant | ||
GR01 | Patent grant |