CN112592925B - Stable genetic transformation system for lycium ruthenicum and application thereof - Google Patents
Stable genetic transformation system for lycium ruthenicum and application thereof Download PDFInfo
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Abstract
Description
技术领域technical field
本发明属于林木生物技术及分子生物学领域,具体涉及一种黑果枸杞稳定遗传转化体系及其应用。The invention belongs to the fields of forestry biotechnology and molecular biology, and specifically relates to a stable genetic transformation system of Lycium barbarum and its application.
背景技术Background technique
黑果枸杞(Lycium ruthenicum Murr.)是茄科枸杞属多年生灌木,株高约20~50cm,主要分布在宁夏、青海、甘肃、新疆等西北荒漠地区,呈片状丛生分布,耐干旱、贫瘠,是黑河流域额济纳地区荒漠群落的优势种和建群种植物,在水土保持、防风固沙等方面发挥重要作用。黑果枸杞果实中含丰富的氨基酸、花青素、多糖及多酚等活性成分,其中原花青素含量更达果实之最,有很高的药用价值,是维、藏医的常用药。随着黑果枸杞的生态价值及经济价值逐渐受到重视,对黑果枸杞基因功能的研究日趋深入。目前对于黑果枸杞的研究主要集中在果实营养成分、药用成分、色素和多糖提取工艺及药理分析方面。研究发现其果实成分具备抗辐射、调节肠道菌群、抗氧化、抗癌、抗疲劳、增强免疫力、抗衰老等功能。此外,新近研究发现黑果枸杞多酚能够延缓氧化应激相关神经退行性疾病的发生和进展;黑果枸杞多糖对氧葡萄糖剥夺/复氧诱导的大鼠原代皮质神经元损伤起神经保护作用。黑果枸杞亦被称为“天然原花青素之王”。黑果枸杞色素是一种无毒级物质,具有良好的食品安全性。其色素具有着色力强、稳定性好、加工简单等特点,可广泛应用于医药、食品、纺织等行业。综上,黑果枸杞是重要的生态经济型灌木,开发应用前景广阔。Black fruit wolfberry (Lycium ruthenicum Murr.) is a perennial shrub belonging to the Solanaceae Lycium genus, with a plant height of about 20-50 cm. It is mainly distributed in northwest desert areas such as Ningxia, Qinghai, Gansu, and Xinjiang. It is the dominant and constructive species of desert communities in the Ejina area of the Heihe River Basin, and plays an important role in soil and water conservation, windbreak and sand fixation. Lycium barbarum fruit is rich in active ingredients such as amino acids, anthocyanins, polysaccharides and polyphenols, among which the content of proanthocyanidins is the highest in the fruit, which has high medicinal value and is commonly used in Uyghur and Tibetan medicine. As the ecological value and economic value of Lycium barbarum are gradually paid attention to, the research on the gene function of Lycium barbarum is getting more and more in-depth. At present, the research on Lycium barbarum black fruit mainly focuses on fruit nutritional components, medicinal components, pigment and polysaccharide extraction technology and pharmacological analysis. Studies have found that its fruit components have the functions of anti-radiation, regulating intestinal flora, anti-oxidation, anti-cancer, anti-fatigue, enhancing immunity, and anti-aging. In addition, recent studies have found that Lycium barbarum polyphenols can delay the occurrence and progression of oxidative stress-related neurodegenerative diseases; Lycium barbarum polysaccharides have neuroprotective effects on primary cortical neuron damage induced by oxygen glucose deprivation/reoxygenation in rats . Black fruit wolfberry is also known as "the king of natural proanthocyanidins". Lycium barbarum pigment is a non-toxic grade substance with good food safety. The pigment has the characteristics of strong tinting strength, good stability, and simple processing, and can be widely used in medicine, food, textile and other industries. In conclusion, Lycium barbarum is an important ecological and economical shrub with broad prospects for development and application.
尽管具备上述诸多优势,黑果枸杞同时具备棘刺多、果皮薄和易得根腐病等生产劣势。快速有效的黑果枸杞稳定遗传转化体系,不仅可用于揭示其关键优良性状相关基因的功能,而且可以达到快速分子育种改良不利性状的目的。Despite the above-mentioned many advantages, black fruit wolfberry also has production disadvantages such as many thorns, thin peel and easy root rot. The fast and effective stable genetic transformation system of Lycium barbarum can not only be used to reveal the functions of genes related to its key good traits, but also can achieve the purpose of rapid molecular breeding to improve unfavorable traits.
目前报道的黑果枸杞稳定遗传转化体系均是基于愈伤的再生体系,且均采用农杆菌菌株GV3101;未见农杆菌菌株EHA105和LBA4404成功转化枸杞的报道,更未见基于快速直接器官发生的黑果枸杞稳定遗传转化的成功报道。农杆菌介导植物稳定遗传转化的筛选方法有正向选择法和负向选择法。基于抗生素和除草剂的负向选择法比较常用。但是由于负向选择原理是未转化成功的细胞/组织在抗性培养基上死亡,而部分细胞死亡通常会对周围转化成功细胞造成伤害,从而导致即便有成功转化细胞也不能如愿获得抗性植株。The currently reported stable genetic transformation systems of Lycium barbarum black fruit are all callus-based regeneration systems, and all use Agrobacterium strain GV3101; there are no reports of successful transformation of Lycium barbarum with Agrobacterium strains EHA105 and LBA4404, let alone rapid and direct organogenesis. The successful report of stable genetic transformation of Lycium barbarum black fruit. The screening methods for Agrobacterium-mediated plant stable genetic transformation include positive selection and negative selection. Negative selection based on antibiotics and herbicides is commonly used. However, due to the principle of negative selection, untransformed cells/tissues die on the resistant medium, and part of the cell death usually causes damage to the surrounding successfully transformed cells, resulting in the inability to obtain resistant plants even if there are successfully transformed cells .
发明内容Contents of the invention
本发明目的是提供一种黑果枸杞稳定遗传转化体系及其应用。The purpose of the present invention is to provide a stable genetic transformation system of Lycium barbarum and its application.
无刺黑果枸杞蔗糖合酶SUS基因,它的碱基序列如序列表SEQ ID NO.1所示。The base sequence of the sucrose synthase SUS gene of Lycium barbarum Lycium barbarum is shown in SEQ ID NO.1 of the sequence table.
一种转基因植物表达载体质粒,它是在植物表达载体中插入了SUS。 The utility model relates to a transgenic plant expression vector plasmid, in which SUS is inserted into the plant expression vector.
一种转基因植物表达载体质粒,它是在植物表达载体中插入了SUS+X融合基因,X代表转基因目的基因,SUS基因为如序列表SEQ ID NO.1所示的基因;A transgenic plant expression vector plasmid, in which a SUS + X fusion gene is inserted into the plant expression vector, X represents the transgenic target gene, and the SUS gene is the gene shown in the sequence table SEQ ID NO.1;
所述的X为GFP基因; The X is the GFP gene;
所述的植物表达载体为pRI101AN。The plant expression vector is pRI101AN.
一种重组农杆菌,它转化了所述的一种转基因植物表达载体质粒;A recombinant Agrobacterium, which has transformed the expression vector plasmid of a transgenic plant;
所述的农杆菌为EHA105或LBA4404。The Agrobacterium is EHA105 or LBA4404.
一种黑果枸杞稳定遗传转化体系,它包括:A stable genetic transformation system of Lycium barbarum, comprising:
1)取黑果枸杞叶尖外植体预培养1~2d,加入所述的重组农杆菌侵染,所述的预培养的培养基由4.74 g/l的 MS干粉 、40 g/l的蔗糖和4.8 g/l的琼脂组成;1) Pre-cultivate the explants of Lycium barbarum leaf tips for 1-2 days, and then add the recombinant Agrobacterium to infect. The pre-culture medium consists of 4.74 g/l MS dry powder, 40 g/l sucrose and 4.8 g/l of agar composition;
2)侵染后,接种到共培养培养基中,暗培养,直至叶片外植体周围长出白色农杆菌;所述的共培养培养基由4.74 g/l的MS干粉、40g/l的蔗糖、4.8g/l的琼脂和100 μM AS组成;2) After infection, inoculate into the co-cultivation medium and culture in dark until white Agrobacterium grows around the leaf explants; the co-cultivation medium consists of 4.74 g/l MS dry powder, 40 g/l sucrose , 4.8g/l agar and 100 μM AS;
3)共培养后,用含有500 mg/l Cef的无菌水清洗黑果枸杞叶片外植体;将外植体接种到选择培养基,培养至开始生芽形成完整抗性小植株;所述的选择培养基由4.74g/l的MS干粉、40 g/l的蔗糖、4.8g/l的琼脂、3 mg/l的Kana和300mg/l的Cef组成;3) After co-cultivation, the explants of Lycium barbarum leaves were washed with sterile water containing 500 mg/l Cef; the explants were inoculated into the selection medium, and cultured until budding began to form complete resistant plantlets; The selection medium of 4.74g/l MS dry powder, the sucrose of 40 g/l, the agar of 4.8g/l, the Kana of 3 mg/l and the Cef of 300mg/l;
4)步骤3)所述的抗性小植株的芽长至高度4.5~5.5cm,剪取1.5~2.5cm带顶芽茎,接种到抗性生根培养基中,培养至芽能够生根并能正常生长;所述的抗性生根培养基由2.37g/l的MS干粉、20g/l的蔗糖、4.8 g/l的琼脂、5 mg/l的Kana、300 mg/l的Cef组成。4) The buds of the resistant plantlets described in step 3) grow to a height of 4.5~5.5cm, cut off 1.5~2.5cm stems with terminal buds, inoculate them into the resistant rooting medium, and cultivate until the buds can root and can be normal Growth; the resistant rooting medium is composed of MS dry powder of 2.37g/l, sucrose of 20g/l, agar of 4.8 g/l, Kana of 5 mg/l, and Cef of 300 mg/l.
本发明提供了无刺黑果枸杞蔗糖合酶SUS基因,它的碱基序列如序列表SEQ IDNO.1所示;一种转基因植物表达载体质粒,它是在植物表达载体中插入了SUS+X融合基因,X代表转基因目的基因,SUS基因为如序列表SEQ ID NO.1所示的基因;一种黑果枸杞稳定遗传转化体系,它包括:取黑果枸杞叶尖外植体预培养1d,加入所述的重组农杆菌侵染;侵染后,接种到共培养培养基中,暗培养,直至叶片外植体周围长出白色农杆菌;共培养后,用无菌水清洗黑果枸杞叶片外植体;将外植体接种到选择培养基,培养至开始生芽形成完整抗性小植株;待芽长至高度4.5~5.5cm,剪取1.5~2.5cm带顶芽茎,接种到抗性生根培养基中,培养至芽能够生根并能正常生长;The invention provides the SUS gene of sucrose synthase from Lycium barbarum thorn, its base sequence is shown in the sequence table SEQ ID NO.1; a transgenic plant expression vector plasmid, which is inserted into the plant expression vector with SUS + X A fusion gene, X represents the transgenic target gene, and the SUS gene is the gene shown in the sequence table SEQ ID NO.1; a stable genetic transformation system of Lycium barbarum black fruit, which includes: taking the leaf tip explants of Lycium barbarum black fruit and pre-cultivating them for 1d , adding the recombinant Agrobacterium to infect; after inoculation, inoculate into the co-cultivation medium, and cultivate in dark until white Agrobacterium grows around the leaf explants; after co-cultivation, wash the black wolfberry with sterile water Leaf explants; inoculate the explants into the selection medium, and cultivate until buds start to form complete resistant plantlets; when the buds grow to a height of 4.5-5.5 cm, cut 1.5-2.5 cm stems with terminal buds and inoculate them into In the resistant rooting medium, cultivate until the buds can take root and grow normally;
本发明的有益效果:采用农杆菌菌株EHA105和LBA4404实现对黑果枸杞的稳定遗传转化,转化效率高达8.33-16.65%;thornlessSUS来自无刺黑果枸杞;全程无需任何外源激素;不经过愈伤阶段,缩短转化周期,减少农杆菌污染可能;低浓度Kana即可以达到筛选效果,又可以降低对植物材料的伤害;无激素和低浓度Kana筛选致使抗性植株生长良好健壮;发现高表达绿色荧光蛋白对黑果枸杞有毒害,植株出现生长缓慢等不利性状,但是高表达GFP与thornlessSUS的融合基因SUSGFP可以降低这种毒害,植株可以正常生长,组成型高表达thornlessSUS的黑果枸杞植株表现出茎干粗、分根孽能力强、须根数量大增等特点。Beneficial effects of the present invention: Agrobacterium strains EHA105 and LBA4404 are used to achieve stable genetic transformation of Lycium barbarum black fruit, and the transformation efficiency is as high as 8.33-16.65%; thornlessSUS comes from Lycium barbarum thornless; no exogenous hormone is needed in the whole process; no callus is required stage, shorten the transformation cycle, and reduce the possibility of Agrobacterium contamination; low-concentration Kana can achieve the screening effect and reduce the damage to plant materials; hormone-free and low-concentration Kana screening results in good and robust growth of resistant plants; high expression of green fluorescence was found The protein is toxic to Lycium barbarum, and the plants have unfavorable traits such as slow growth , but the fusion gene SUSGFP that highly expresses GFP and thornlessSUS can reduce this toxicity, and the plants can grow normally. It has the characteristics of thick stem, strong ability to divide roots, and a large increase in the number of fibrous roots.
本发明建立了一种极低卡那霉素(Kana)浓度的筛选转化体系。该浓度下未转化成功外植体不会形成植株,但也不会迅速死亡;转化成功外植体可以迅速形成健康抗性植株;建立了一种快速、高效、低成本、易操作的黑果枸杞稳定遗传转化体系,包括筛选建立目标基因群体,成功克隆无刺黑果枸杞蔗糖合酶基因(thornlessSUS)的CDS全长,构建含单个基因GFP、thornlessSUS的超表达载体,构建含融合基因thornlessSUS-GFP的超表达载体,筛选建立受体植物群体,转化黑果枸杞快速获得具备抗性且表达目的基因的植株,以及成功转基因植株性状的鉴定等。The invention establishes a screening transformation system with very low concentration of kanamycin (Kana). Under this concentration, the non-transformed explants will not form plants, but they will not die quickly; the transformed explants can quickly form healthy resistant plants; a fast, efficient, low-cost, and easy-to-operate black fruit Lycium barbarum stable genetic transformation system, including screening and establishing target gene groups, successfully cloning the full-length CDS of the thornless black fruit sucrose synthase gene ( thornlessSUS ), constructing an overexpression vector containing a single gene GFP and thornlessSUS , and constructing a fusion gene thornlessSUS- GFP overexpression vector, screening and establishment of recipient plant populations, transformation of Lycium barbarum to quickly obtain plants with resistance and expression of target genes, and identification of traits of successfully transgenic plants, etc.
附图说明Description of drawings
图1 表达载体的表达单元结构图;(A)pRI-GFP;(B)pRI-SUS;(C) pRI-SUSGFP;Figure 1 Structural diagram of the expression unit of the expression vector; (A) pRI-GFP; (B) pRI-SUS; (C) pRI-SUSGFP;
图2 黑果枸杞叶片外植体Kana浓度筛选;A.接种14d后生根的叶片外植体(对照);B.接种28d后生根外植体开始生芽(对照);C.接种30d后Kana浓度为3mg/l的叶片外植体;D.接种30d后Kana浓度高于3mg/l的叶片外植体;Figure 2 Screening of Kana concentration in leaf explants of Lycium barbarum; A. Rooted leaf explants 14 days after inoculation (control); B. Rooted explants began to sprout 28 days after inoculation (control); C. Kana 30 days after inoculation Concentration is the leaf explant of 3mg/l; D. the leaf explant of Kana concentration higher than 3mg/l after inoculation 30d;
图3 农杆菌转化获得的黑果枸杞转基因植株;A.筛选培养30d时未经过转化的黑果枸杞叶尖外植体(对照);B.被转化的筛选培养17d时的生根叶尖外植体;C-E.筛选培养30d时经过转化的生芽叶片外植体;F,G.接种在含有Kana和Cef的生根培养基20d后的转基因植株;H.接种在含有Kana和Cef的生根培养基20d后的未经过转化的植株;I.转基因植株(左)与未经过转化植株(右)生根情况;Figure 3 Transgenic plants of Lycium barbarum black fruit transformed with Agrobacterium; A. Untransformed Lycium barbarum leaf tip explants (control) at 30 days of screening culture; B. Rooting leaf tip explants of transformed Lycium barbarum fruit at 17 days of screening culture C-E. Transformed sprouting leaf explants at 30 days of selection; F, G. Transgenic plants inoculated on the rooting medium containing Kana and Cef for 20 days; H. Inoculated on the rooting medium containing Kana and Cef Untransformed plants after 20 days; I. Rooting situation of transgenic plants (left) and untransformed plants (right);
图4 pRI-SUS载体转基因植株PCR验证;M:DL2000 DNA Plus Marker;1-4:转基因抗性植株;5,6:阴性对照,未转化植株;7:阳性对照,pRI-SUS载体;9:空白对照,水;Figure 4 PCR verification of pRI-SUS vector transgenic plants; M: DL2000 DNA Plus Marker; 1-4: Transgenic resistant plants; 5, 6: Negative control, untransformed plants; 7: Positive control, pRI-SUS vector; 9: Blank control, water;
图5 pRI-SUSGFP载体转基因植株PCR验证。M:DL2000 DNA Marker;1-4:转基因抗性植株;5,6:阴性对照,未经转化植株;7:阳性对照,pRI-SUSGFP载体质粒;8:空白对照,水;Figure 5 PCR verification of pRI-SUSGFP vector transgenic plants. M: DL2000 DNA Marker; 1-4: Transgenic resistant plants; 5, 6: Negative control, untransformed plants; 7: Positive control, pRI-SUSGFP vector plasmid; 8: Blank control, water;
图6 pRI-SUS载体转基因植株半定量PCR验证。M:DL2000 DNA Marker; 1:水(对照); 2-3:未转化植株根;4-5:未转化植株茎;6-7:未转化植株叶;8-9:转化抗性植株根;10-11:转化抗性植株茎;12-13:转化抗性植株叶Figure 6 Semi-quantitative PCR verification of pRI-SUS vector transgenic plants. M: DL2000 DNA Marker; 1: water (control); 2-3: roots of untransformed plants; 4-5: stems of untransformed plants; 6-7: leaves of untransformed plants; 8-9: roots of transformed resistant plants; 10-11: Stems of transformed resistant plants; 12-13: Leaves of transformed resistant plants
图7 激光共聚焦显微镜观察转融合基因SS-GFP的黑果枸杞叶片。Fig. 7 Laser confocal microscope observation of the leaves of Lycium barbarum with fusion gene SS-GFP .
具体实施方式Detailed ways
实施例1 thornlessSUS基因克隆Example 1 Cloning of thornlessSUS gene
原始实验材料:从多株有刺成年黑果枸杞采集成熟种子,湿润条件下37 ℃催芽24h后于超净工作台中进行表面杀菌(75%酒精处理30-60 S,0.1%升汞处理1-2 min,无菌清水冲洗3-5次),吸干表面水分后横向接种到1/2MS培养基(1/2MS大量元素+1/2MS微量元素+1/2MS铁盐+1/2MS有机成分+2%蔗糖+0.45-0.5%琼脂粉,pH值5.8-6.0)。完全黑暗24-26 ℃条件下待种子萌发后置于12 h光照/12 h黑暗的光周期条件下培养。光由LED灯管提供,强度为48 μmol/m2/s。待无菌种苗发育出10-20片叶时,取幼嫩含1-2叶腋的茎段(去叶)作为外植体,竖向下端朝下插入茎培养基2-3 mm。上述茎培养基为MS培养基含4 % (w/v)蔗糖,0.50 % (w/v) 琼脂粉和0.1-0.2 mg /L 6-BA, pH值5.8. 光周期和温度条件同上述种苗培养。该培养条件下,部分种苗得来的外植体插入培养基的茎切口先产生结节样愈伤,然后愈伤于相同培养基上形成大量不定芽丛;同时腋芽也会迅速萌生丛生芽。待愈伤产生的不定芽丛高度超过1 cm时,切/剪下芽体接种到含0. 2 mg /L IBA的1/2MS培养基诱导生根。待芽体生根且茎发育到含10-20片叶时,再次按照上述方法取茎段作为外植体,诱导不定芽生,切芽诱导生根。如此进行2-6代的再生培养,可以从一粒黑杞成熟种子获得一个组培无性系群体。将瓶内的各个生根无性系群体分别做好标记,置于窗台自然光照下驯化,温度23-28 ℃,待茎干粗壮且叶色深绿时移栽入口径为15 cm的花盆。移栽基质为1草炭:1腐殖土:2菜园土,基质移栽之前装入聚乙烯食用菌袋封口于121 ℃湿热条件下灭菌30-60 min。将组培苗根部培养基清洗干净并置于广谱抗菌药工作液中浸泡5-10 min,之后移栽入盆中基质,并将基质浇透水覆盖带孔塑料膜。注意一瓶移入一盆中。10 d内盆土含水率保持在100%田间持水量,10 d后可逐渐揭开覆盖的塑料膜,盆土含水率保持在90-100%田间持水量。移栽于温室内进行,环境温度为25±2 ℃,光照为散射自然光。待盆苗开始抽新茎时,将其逐渐转移到直射自然光照下,盆土田间持水量仍然保持 90%以上。对移栽且刚恢复生长的各个组培无性系进行盆栽控水试验(温室自然光照下),将每个无性系移栽苗分为两组,将其田间持水量分别控制在90%以上和60%以下。选取一个典型的在>90%田间持水量条件下保持无刺的无性株系。取其幼嫩尚未木质化的徒长完全无刺茎,去掉叶片,剪取最顶端的三个茎节作为高通量转录组测序(RNA-Seq)和基因克隆的原始实验材料。Raw experimental materials: Mature seeds were collected from several thorny adult Lycium barbarum berries, germinated at 37 ℃ for 24 hours under humid conditions, and then sterilized on the surface in an ultra-clean workbench (75% alcohol treatment for 30-60 s, 0.1% mercury liter treatment for 1- 2 min, rinse with sterile water 3-5 times), blot the surface moisture and inoculate horizontally into 1/2MS medium (1/2MS macroelements + 1/2MS trace elements + 1/2MS iron salt + 1/2MS organic components +2% sucrose +0.45-0.5% agar powder, pH 5.8-6.0). After germination, the seeds were cultured under a photoperiod of 12 h light/12 h dark at 24-26 °C in complete darkness. Light is provided by LED tubes with an intensity of 48 μmol/m 2 /s. When the aseptic seedlings develop 10-20 leaves, take young stem segments (leaves removed) containing 1-2 leaf axils as explants, and insert 2-3 mm into the stem medium with the vertical lower end facing down. The above-mentioned stem medium is MS medium containing 4% (w/v) sucrose, 0.50% (w/v) agar powder and 0.1-0.2 mg/L 6-BA, pH value 5.8. The photoperiod and temperature conditions are the same as the above-mentioned species Seedling cultivation. Under this culture condition, some of the explants obtained from seedlings inserted into the stem incision of the medium first produced nodular callus, and then the callus formed a large number of adventitious bud clusters on the same medium; at the same time, the axillary buds also rapidly germinated clustered buds . When the height of the adventitious bud cluster produced by the callus exceeds 1 cm, cut/cut the bud body and inoculate it into 1/2MS medium containing 0.2 mg/L IBA to induce rooting. When the buds take root and the stem develops to contain 10-20 leaves, take the stem segment as an explant again according to the above method, induce adventitious buds, and cut the buds to induce rooting. Carrying out 2-6 generations of regenerative culture in this way can obtain a group of tissue-cultured clones from a mature seed of black barbarum. Each rooting clone group in the bottle was marked separately, placed on the window sill under natural light for domestication, the temperature was 23-28 °C, and when the stems were strong and the leaves were dark green, they were transplanted into flowerpots with a diameter of 15 cm. The transplanting substrate is 1 peat: 1 humus: 2 vegetable garden soil. Before transplanting the substrate, put it into a polyethylene edible fungus bag, seal it, and sterilize it at 121 ℃ for 30-60 minutes under humid and hot conditions. Clean the root medium of the tissue culture seedlings and soak them in the broad-spectrum antibacterial working solution for 5-10 minutes, then transplant them into the substrate in the pot, and cover the substrate with perforated plastic film with water. Note that a bottle is moved into a basin. The water content of the pot soil was kept at 100% of the field capacity within 10 days, and the covered plastic film could be gradually uncovered after 10 days, and the water content of the pot soil was kept at 90-100% of the field capacity. Transplanting was carried out in a greenhouse, the ambient temperature was 25±2°C, and the light was scattered natural light. When the potted seedlings start to take out new stems, they are gradually transferred to direct natural light, and the field water holding capacity of the potted soil remains above 90%. A potted water control test (under natural light in the greenhouse) was carried out on each tissue culture clone that had been transplanted and had just resumed growth. The transplanted seedlings of each clone were divided into two groups, and their field water holding capacity was controlled at more than 90% and Below 60%. Select a typical clone that remains thornless at >90% field capacity. Take the young, elongated and completely thornless stems that have not been lignified, remove the leaves, and cut the top three stem nodes as the original experimental materials for high-throughput transcriptome sequencing (RNA-Seq) and gene cloning.
通过百迈克公司的RNA-Seq,获得无刺黑果枸杞蔗糖合酶基因(thornlessSUS)部分表达序列。根据此序列,采用软件Primer Premier5设计引物,用于thornlessSUS克隆;引物设计如下:The partial expression sequence of the sucrose synthase gene ( thornlessSUS ) of Lycium barbarum thornless was obtained by the RNA-Seq of Biomec. According to this sequence, use the software Primer Premier5 to design primers for thornless SUS cloning; the primers are designed as follows:
SUS-F:5'-GGAAAGAATGGCAGCCAGTAG- 3'SUS-F: 5'-GGAAAGAATGGCAGCCAGTAG-3'
SUS-R:5'- CCAGTGTCGGGATAACCAAG- 3';SUS-R: 5'-CCAGTGTCGGGATAACCAAG-3';
采用上述无刺茎节为材料,采用Ultrapure RNA Kit提取总RNA并合成第一链cDNA,具体方法如下:Using the above-mentioned thorn-free stem nodes as materials, the Ultrapure RNA Kit was used to extract total RNA and synthesize the first-strand cDNA. The specific method is as follows:
1)取100-200mg茎节材料在液氮中充分研磨,加入1ml TRIzon Reagent,混匀;1) Take 100-200mg stem node material and grind it fully in liquid nitrogen, add 1ml TRIzon Reagent, and mix well;
2)加入TRIzon Reagent后反复吹打几次,使样本充分裂解;室温放置5 min,使蛋白核酸复合物完全分离;2) After adding TRIzon Reagent, pipette repeatedly several times to fully lyse the sample; place it at room temperature for 5 minutes to completely separate the protein-nucleic acid complex;
3)加入200μl氯仿,盖好管盖,剧烈振荡15s,室温放置2min;3) Add 200 μl chloroform, cover the tube cap, shake vigorously for 15 seconds, and place at room temperature for 2 minutes;
4)在4℃下,12000 rpm离心10 min,将位于上层水相中的RNA移到一个新的RNaseFree离心管中;4) Centrifuge at 12,000 rpm for 10 min at 4°C, and transfer the RNA in the upper aqueous phase to a new RNaseFree centrifuge tube;
5)加入200 μl的70%乙醇(无RNase水配制),颠倒混匀;5) Add 200 μl of 70% ethanol (prepared with RNase-free water), invert and mix;
6)将上步所得溶液全部加入到已装入收集管的吸附柱中。12000 rpm离心20 s,倒掉收集管中的废液,将吸附柱重新放回收集管中;6) Add all the solution obtained in the previous step into the adsorption column that has been loaded into the collection tube. Centrifuge at 12000 rpm for 20 s, pour off the waste liquid in the collection tube, and put the adsorption column back into the collection tube;
7)向吸附柱中加入700 μl Buffer RW1,12000 rpm离心20 s,倒掉收集管中的废液,将吸附柱重新放回收集管中;7) Add 700 μl Buffer RW1 to the adsorption column, centrifuge at 12000 rpm for 20 s, discard the waste liquid in the collection tube, and put the adsorption column back into the collection tube;
8)向吸附柱中加入500 μl Buffer RW2(使用前加入无水乙醇),12000 rpm离心20s,倒掉收集管中的废液,将吸附柱重新放回收集管中;8) Add 500 μl Buffer RW2 (add absolute ethanol before use) to the adsorption column, centrifuge at 12000 rpm for 20s, discard the waste liquid in the collection tube, and put the adsorption column back into the collection tube;
9)重复步骤8);9) Repeat step 8);
10)12000 rpm离心2 min,倒掉收集管中废液。将吸附柱置于室温5-10 min,彻底晾干;10) Centrifuge at 12000 rpm for 2 min, and discard the waste liquid in the collection tube. Place the adsorption column at room temperature for 5-10 minutes and dry it thoroughly;
11)将吸附柱置于一个新的无RNase离心管中,向吸附柱的中间部位加入20-50 μlRNase-Free Water,室温放置1 min,12000 rpm离心1 min,收集RNA溶液,电泳并采用微量核酸蛋白测定仪确定浓度、完整性和纯度符合实验要求。-70℃—-80℃保存RNA,防止降解。11) Put the adsorption column in a new RNase-free centrifuge tube, add 20-50 μl RNase-Free Water to the middle part of the adsorption column, place at room temperature for 1 min, centrifuge at 12000 rpm for 1 min, collect the RNA solution, electrophoresis and use micropipette Nucleic acid protein analyzer to determine the concentration, integrity and purity meet the experimental requirements. Store RNA at -70°C—-80°C to prevent degradation.
12)使用M-mlV Reverse Transcriptase(M1701)合成cDNA: 整个反应体系在0.2ml PCR管中进行,反应体系如下:12) Use M-mlV Reverse Transcriptase (M1701) to synthesize cDNA: The entire reaction system is carried out in a 0.2ml PCR tube, and the reaction system is as follows:
RNA 5μlRNA 5μl
Oligo d(T)15 1μlOligo d(T) 15 1μl
DEPC水 9μlDEPC water 9μl
总体积 15μlTotal volume 15μl
反应过程如下:70℃ 5min,迅速放到冰上,冰浴2min;加入1 μl M-mlV,5 μl M-mlV 5×Reaction Buffer,5 μl dNTP,1 μl RNase,3μl 无菌水(RNase free);42℃ 60min,4 ℃ 保存。The reaction process is as follows: 70°C for 5 minutes, quickly put it on ice, and ice bath for 2 minutes; add 1 μl M-mlV, 5 μl M-
以上述合成的cDNA作为模板,采用引物对SUS-F和SUS-R进行PCR,体系如下:Use the cDNA synthesized above as a template, and use primers to perform PCR on SUS-F and SUS-R. The system is as follows:
cDNA 1μlcDNA 1μl
SUS-F 0.5μlSUS-F 0.5μl
SUS-R 0.5μlSUS-R 0.5μl
Taq 0.25μlTaq 0.25μl
Taq Buffer 2.5μlTaq Buffer 2.5μl
dNTP 0.5μldNTP 0.5μl
超纯水 19.75 μlUltrapure water 19.75 μl
总体积 25μlTotal volume 25μl
PCR反应程序为:95 ℃ 5 min;95 ℃ 30 s;退火温度56 -60 ℃ 30 s,72 ℃ 延伸1 min,35个循环;72℃后延伸5min。The PCR reaction program was: 95°C for 5 min; 95°C for 30 s; annealing temperature 56-60°C for 30 s, 72°C for 1 min, 35 cycles; 72°C for 5 min.
将PCR产物在1 %的琼脂糖凝胶上电泳,凝胶成像系统观察,拍照,胶回收理想片段、连接T载体(pUCm-T Vector试剂盒)转化,送到北京华大基因进行测序。测序结果证明获得的thornlessSUS序列无终止密码子。故采用3’RACE获得thornlessSUS基因的完整CDS。根据上述获得的thornlessSUS基因的部分序列设计上游引物C751:5’-GGGAAACACTGCTCAACG-3’;下游引物选用3’RACE的通用引物B26:5’- GACTCGAGTCGACATCGATTTTTTTTTTTTTTTTT-3’;通过PCR方法扩增thornlessSUS基因3’区;PCR反应体系如下:The PCR product was electrophoresed on a 1% agarose gel, observed by a gel imaging system, photographed, the ideal fragment was recovered from the gel, transformed with a T vector (pUCm-T Vector kit), and sent to Beijing BGI for sequencing. Sequencing results proved that the obtained thornlessSUS sequence has no stop codon. Therefore, 3'RACE was used to obtain the complete CDS of thornlessSUS gene. According to the partial sequence of the thornlessSUS gene obtained above, the upstream primer C751: 5'-GGGAAACACTGCTCAACG-3' was designed; the downstream primer was the universal primer B26 of 3'RACE: 5'- GACTCGAGTCGACATCGATTTTTTTTTTTTTTTTT-3'; the 3' of the thornlessSUS gene was amplified by PCR Area; PCR reaction system is as follows:
cDNA 1μlcDNA 1μl
C751 0.5μlC751 0.5μl
B26 0.5 μlB26 0.5 μl
Taq 0.25μlTaq 0.25μl
Taq Buffer 2.5 μlTaq Buffer 2.5 μl
dNTP 0.5 μldNTP 0.5 μl
超纯水 19.75 μlUltrapure water 19.75 μl
总体积 25 μlTotal volume 25 μl
PCR反应程序为:95 ℃ 5 min;95 ℃ 30 s;46 ℃ 30 s,退火时间为30 s,72 ℃2min,35个循环;72 ℃ 5min;The PCR reaction program was: 95 °C for 5 min; 95 °C for 30 s; 46 °C for 30 s, annealing time of 30 s, 72 °C for 2 min, 35 cycles; 72 °C for 5 min;
将PCR产物在1 %的琼脂糖凝胶上电泳观察基因扩增情况,凝胶成像系统观察,拍照。选择条带单一清晰的PCR产物,胶回收,连接T载体转化后,送至北京华大基因测序。根据测序结果,拼接得到该基因CDS全长序列。将该序列在NCBI上对比分析,预计获得thornlessSUS基因CDS全长。根据全长序列采用软件Primer Premier5设计上游引物F:5’-ATGGCAGCCAGTAGTCTTAGCA-3’和下游引物R-2:5 ’-TAAATCCCAGATAATGTCATCACTT-3’,通过PCR扩增thornlessSUS基因CDS全长。PCR反应体系如下:The PCR product was electrophoresed on a 1% agarose gel to observe the gene amplification, and the gel imaging system was used to observe and take pictures. Select the PCR product with a single and clear band, recover from the gel, connect to the T vector for transformation, and send it to Beijing Huada Gene for sequencing. According to the sequencing results, the full-length CDS sequence of the gene was spliced. The sequence was compared and analyzed on NCBI, and the full-length CDS of the thornlessSUS gene was expected to be obtained. According to the full-length sequence, the upstream primer F: 5'-ATGGCAGCCAGTAGTCTTAGCA-3' and the downstream primer R-2: 5'-TAAATCCCAGATAATGTCATCACTT-3' were designed using the software Primer Premier5, and the full-length CDS of the thornlessSUS gene was amplified by PCR. The PCR reaction system is as follows:
cDNA 1μlcDNA 1μl
F 0.5μlF 0.5μl
R-2 0.5μlR-2 0.5μl
Taq 0.25μlTaq 0.25μl
Taq Buffer 2.5μlTaq Buffer 2.5μl
dNTP 0.5μldNTP 0.5μl
超纯水 19.75μlUltrapure water 19.75μl
总体积 25μlTotal volume 25μl
PCR反应程序为:95 ℃ 5 min;95 ℃ 30 s;设置5个退火梯度,61.4 -55.6 ℃ 30s,72 ℃ 5 min,35个循环;72 ℃ 10min;4 ℃保存;The PCR reaction program was: 95 °C for 5 min; 95 °C for 30 s; set 5 annealing gradients, 61.4-55.6 °C for 30 s, 72 °C for 5 min, 35 cycles; 72 °C for 10 min; 4 °C storage;
将PCR产物用1 %的琼脂糖凝胶电泳观察基因扩增情况,凝胶成像系统观察,拍照。选择条带单一清晰的目标PCR产物,切胶回收,连接T载体转化后,送至北京华大基因测序,获得的thornlessSUS全长CDS序列如序列表SEQ ID NO.1所示。The PCR products were electrophoresed on a 1% agarose gel to observe the gene amplification, and the gel imaging system was used to observe and take pictures. The target PCR product with a single and clear band was selected, recovered by cutting the gel, connected to the T vector for transformation, and then sent to Beijing Huada Gene for sequencing. The obtained full-length CDS sequence of thornlessSUS is shown in the sequence table SEQ ID NO.1.
上述实验用到的胶回收采用康为世纪生物科技有限公司的DNA凝胶回收试剂盒,具体方法如下:The gel used in the above experiments was recovered using the DNA gel recovery kit of Kangwei Century Biotechnology Co., Ltd. The specific method is as follows:
1)将单一目的DNA条带切下,放入两个2 ml离心管中,并称量胶的重量;1) Cut out the single target DNA band, put it into two 2 ml centrifuge tubes, and weigh the gel;
2)向放有胶块的离心管中加入一倍体积的Buffer PG;2) Add one volume of Buffer PG to the centrifuge tube containing the gel block;
3)50℃水浴,每隔2-3 min温和地上下颠倒离心管,直至胶块充分溶解,溶液为黄色;3) In a water bath at 50°C, gently invert the centrifuge tube up and down every 2-3 minutes until the glue is fully dissolved and the solution is yellow;
4)向已装入收集管中的吸附柱中加入200 μl Buffer PS,13000 rpm离心1 min,弃废液,将吸附柱放回收集管中;4) Add 200 μl Buffer PS to the adsorption column loaded into the collection tube, centrifuge at 13000 rpm for 1 min, discard the waste liquid, and put the adsorption column back into the collection tube;
5)将步骤3)得到的溶液加入吸附柱中,室温放置2 min,13000 rpm离心1 min,弃废液,将吸附柱放回收集管中;5) Add the solution obtained in step 3) into the adsorption column, place at room temperature for 2 minutes, centrifuge at 13,000 rpm for 1 minute, discard the waste liquid, and put the adsorption column back into the collection tube;
6)向吸附柱中加入450μl Buffer PW(事先加入无水乙醇),13000 rpm离心1 min,弃废液,将吸附柱放回收集管中;6) Add 450 μl Buffer PW (add absolute ethanol in advance) to the adsorption column, centrifuge at 13000 rpm for 1 min, discard the waste liquid, and put the adsorption column back into the collection tube;
7)重复步骤6);7) Repeat step 6);
8)13000 rpm离心1 min ,弃废液,将吸附柱放回收集管中;8) Centrifuge at 13000 rpm for 1 min, discard the waste liquid, and put the adsorption column back into the collection tube;
9)将吸附柱放到一个新的1.5 ml离心管中,悬空滴加50 μl Buffer EB,室温放置2min,13000 rpm离心1min,-20℃保存。9) Put the adsorption column into a new 1.5 ml centrifuge tube, add 50 μl Buffer EB dropwise in the air, place at room temperature for 2 minutes, centrifuge at 13,000 rpm for 1 minute, and store at -20°C.
10)取1 μl以纯化的DNA片段在1 %的琼脂糖凝胶上电泳,凝胶成像系统观察,拍照。10) Take 1 μl of the purified DNA fragments and electrophoresis on 1% agarose gel, observe and take pictures with the gel imaging system.
所述的连接T载体转化,均采用pUCm-T载体进行连接,具体方法如下:取0.2 pmol的纯化稀释后的DNA片段与50 ng的pUCm-T载体连接,反应体系如下:The transformation of the ligated T vector is all connected with the pUCm-T vector, and the specific method is as follows: take 0.2 pmol of the purified and diluted DNA fragment and connect it with 50 ng of the pUCm-T vector, and the reaction system is as follows:
纯化稀释后的DNA片段 5 μl(根据长度和浓度调整体积)Purify 5 μl of diluted DNA fragment (adjust volume according to length and concentration)
pUCm-T Vector 1 μlpUCm-
10 x Ligation Buffer 1 μl10
50 % PEG 4000 1 μl50% PEG 4000 1 μl
T4 DNA Ligase 1 μl
ddH2O 1 μl
总体积 10 μl10 μl total volume
16 ℃过夜连接。Ligate overnight at 16°C.
上述实验中连接后的产物,均转入大肠杆菌DH5α感受态中进行测序,具体操作步骤如下:The ligated products in the above experiments were all transferred into Escherichia coli DH5α competent for sequencing. The specific operation steps are as follows:
1)将感受态细胞中置于冰水浴中化冻,取5 μl连接产物加入到50 μl的感受态细胞中,轻轻混匀;1) Thaw the competent cells in an ice-water bath, add 5 μl of the ligation product to 50 μl of competent cells, and mix gently;
2)冰水浴30 min,不要晃动;2) Ice-water bath for 30 minutes, do not shake;
3)42 ℃热击60 s,不要晃动;3) Heat shock at 42°C for 60 s without shaking;
4)冰水浴2 min,不要晃动;4) Ice-water bath for 2 minutes, do not shake;
5)加入500 μl无菌的LB液体培养基;5) Add 500 μl sterile LB liquid medium;
6)37 ℃,180 rpm震荡复苏60 min;6) 37 ℃, 180 rpm shaking recovery for 60 minutes;
7)4000 rpm离心1 min,取100 μl菌液涂布在具有Amp抗性(100 mg/l)的LB固体培养基上,37 ℃倒置培养。7) Centrifuge at 4000 rpm for 1 min, take 100 μl of the bacterial liquid and spread it on the LB solid medium with Amp resistance (100 mg/l), and culture it upside down at 37 °C.
用无菌的白色枪头挑取多个单菌落,加入到添加100 mg/l 的氨苄青霉素(Amp)(生工)的5 ml LB液体培养基中,37 ℃,180 rpm培养12-16 h。取扩大培养的菌液用M13引物(M13-F: 5’-GTTGTAAAACGACGGCCAG-3’; M13-R: 5’-CAGGAAACAGCTATGACCATGATTACG-3’)通过PCR的方法验证DNA片段是否成功连接到T载体上。PCR反应体系如下:Pick multiple single colonies with a sterile white tip, add them to 5 ml LB liquid medium supplemented with 100 mg/l ampicillin (Amp) (Shenggong), and culture at 37 °C, 180 rpm for 12-16 h . Take the expanded culture and use M13 primers (M13-F: 5’-GTTGTAAAACGACGGCCAG-3’; M13-R: 5’-CAGGAAACAGCTATGACCATGATTACG-3’) to verify whether the DNA fragment is successfully connected to the T vector by PCR. The PCR reaction system is as follows:
单菌落菌液 1μlSingle colony liquid 1μl
M13-F 0.5μlM13-F 0.5μl
M13-R 0.5μlM13-R 0.5μl
Taq 0.25μlTaq 0.25μl
Taq Buffer 2.5μlTaq Buffer 2.5μl
dNTP 0.5μldNTP 0.5μl
超纯水 19.75μlUltrapure water 19.75μl
总体积 25 μlTotal volume 25 μl
PCR反应程序为:95 ℃ 15 min;95 ℃ 30 s;55 ℃ 30 s,72 ℃ 5min,35个循环;72 ℃ 10min;4 ℃保存。取3 μl PCR产物在1 %的琼脂糖凝胶上电泳,观察基因扩增情况,凝胶成像系统观察,拍照。选择条带单一清晰的PCR产物对应的菌种送至北京华大基因测序。The PCR reaction program was: 95°C for 15 min; 95°C for 30 s; 55°C for 30 s, 72°C for 5 min, 35 cycles; 72°C for 10 min; 4°C for storage. Take 3 μl of PCR products and electrophoresis on 1% agarose gel to observe the gene amplification, observe with gel imaging system, and take pictures. Select the strain corresponding to the PCR product with a single clear band and send it to Beijing Huada Gene for sequencing.
实施例2 重组载体的构建Example 2 Construction of recombinant vector
原始载体为pRI101AN(张志宏教授课题组保存),通过PCR在GFP基因CDS两端添加5' NdeI 和 3' EcoRI酶切位点及保护碱基,然后通过双酶切和连接的方式,将GFP基因连接至pRI101AN载体,构建载体命名为pRI-GFP(图1A);The original vector is pRI101AN (preserved by Professor Zhang Zhihong’s research group). 5’ Nde I and 3’ Eco RI restriction sites and protective bases were added to both ends of the CDS of the GFP gene by PCR, and then double-digested and ligated. The GFP gene was connected to the pRI101AN vector, and the constructed vector was named pRI-GFP (Figure 1A);
通过PCR的方法在黑果枸杞thornlessSUS基因CDS两端添加5' NdeI 和 3' EcoRI酶切位点及保护碱基,通过NdeI 和 3' EcoRI双酶切及连接将thornlessSUS的CDS连接至pRI101AN载体,得到的重组载体命名为pRI-SUS(图1B);Add 5' Nde I and 3' Eco RI restriction sites and protective bases at both ends of the CDS of the thornlessSUS gene in Lycium barbarum by PCR, and connect the CDS of thornlessSUS through Nde I and 3' Eco RI double restriction and ligation to the pRI101AN vector, and the resulting recombinant vector was named pRI-SUS (Figure 1B);
在GFP基因两端添加 5' EcoRI 和 3' EcoRI ,通过酶切位点 5' EcoRI 和 3'EcoRI,使用重组的方法将GFP基因克隆至重组载体pRI-SUS中,得到的重组载体命名为pRI-SUSGFP(图1C)。Add 5' Eco RI and 3' Eco RI at both ends of the GFP gene, and clone the GFP gene into the recombinant vector pRI-SUS through the restriction site 5' Eco RI and 3' Eco RI, and the resulting recombinant The vector was named pRI-SUSGFP (Figure 1C).
2、重组载体质粒转入感受态细胞2. Transform the recombinant vector plasmid into competent cells
以上构建完的载体均要转化大肠杆菌并进行验证和测序(华大)以验证序列及方向的正确性;重组载体质粒转入大肠杆菌感受态DH5α中,具体操作步骤如下:The above-constructed vectors should be transformed into E. coli and verified and sequenced (BGI) to verify the correctness of the sequence and direction; the recombinant vector plasmids are transformed into E. coli competent DH5α. The specific operation steps are as follows:
1)将感受态细胞中置于冰水浴中化冻,取三种表达载体的质粒各3 μl加入到50 μl的感受态细胞中,轻轻混匀;1) Thaw the competent cells in an ice-water bath, take 3 μl of each of the three expression vector plasmids and add them to 50 μl of competent cells, and mix gently;
2)冰水浴30 min,不要晃动;2) Ice-water bath for 30 minutes, do not shake;
3)42 ℃热击60 s,不要晃动;3) Heat shock at 42°C for 60 s without shaking;
4)冰水浴2 min,不要晃动;4) Ice-water bath for 2 minutes, do not shake;
5)加入500 μl无菌的LB液体培养基;5) Add 500 μl sterile LB liquid medium;
6)37 ℃,180 rpm震荡复苏60 min;6) 37 ℃, 180 rpm shaking recovery for 60 minutes;
7)4000 rpm离心1 min,取100 μl菌液涂布在具有Kana抗性(50 mg/l)的LB固体培养基上,37 ℃倒置培养。7) Centrifuge at 4000 rpm for 1 min, take 100 μl of the bacterial liquid and spread it on the LB solid medium with Kana resistance (50 mg/l), and culture it upside down at 37 °C.
用无菌的白色枪头挑取多个单菌落,加入到具有Kana抗性(50 mg/l)的5 ml LB液体培养基中,37 ℃,180 rpm培养12-16 h。取扩大培养的菌液,通过PCR的方法检验重组质粒是否转入大肠杆菌感受态DH5α中。Pick multiple single colonies with a sterile white tip, add them to 5 ml LB liquid medium with Kana resistance (50 mg/l), and incubate at 37 °C, 180 rpm for 12-16 h. Take the expanded cultured bacterial solution, and check whether the recombinant plasmid is transferred into Escherichia coli competent DH5α by PCR method.
验证pRI-GFP载体的PCR反应体系如下:The PCR reaction system for verifying the pRI-GFP vector is as follows:
单菌落菌液 1 μl
GFP-F5’- TGCTTCAGCCGCTACCCC -3’ 0.5μlGFP-F5'-TGCTTCAGCCGCTACCCC-3' 0.5μl
GFP-R 5’- ATCGCGCTTCTCGTTGGG -3’ 0.5μlGFP-R 5'-ATCGCGCTTCTCGTTGGG-3' 0.5μl
Taq 0.25 μlTaq 0.25 μl
Taq Buffer 2.5 μlTaq Buffer 2.5 μl
dNTP 0.5 μldNTP 0.5 μl
超纯水 19.75μlUltrapure water 19.75μl
总体积 25μlTotal volume 25μl
PCR反应程序为:95 ℃ 15 min;95 ℃ 30 s;58 ℃ 30 s,72 ℃ 1min,35个循环;72 ℃ 10 min。取3 μl PCR产物在1 %的琼脂糖凝胶上电泳,观察基因扩增情况,凝胶成像系统观察,拍照。选择条带单一清晰且长度正确的PCR产物对应的菌液送至北京华大基因测序;GFP基因序列如序列表SEQ ID NO.2所示。The PCR reaction program was: 95°C for 15 min; 95°C for 30 s; 58°C for 30 s, 72°C for 1 min, 35 cycles; 72°C for 10 min. Take 3 μl of PCR products and electrophoresis on 1% agarose gel to observe the gene amplification, observe with gel imaging system, and take pictures. The bacterial solution corresponding to the PCR product with a single clear band and the correct length was selected and sent to Beijing Huada Gene for sequencing; the GFP gene sequence is shown in the sequence table SEQ ID NO.2.
验证pRI-SUS载体转化效果的的PCR反应体系如下:The PCR reaction system to verify the transformation effect of pRI-SUS vector is as follows:
单菌落菌液 1 μl
SUS-F 5’-GGAAAGAATGGCAGCCAGTAG -3’ 0.5μlSUS-F 5'-GGAAAGAATGGCAGCCAGTAG-3' 0.5μl
SUS-R 5’- CCAGTGTCGGGATAACCAAG -3’ 0.5μlSUS-R 5'-CCAGTGTCGGGATAACCAAG-3' 0.5μl
Taq 0.25μlTaq 0.25μl
Taq Buffer 2.5μlTaq Buffer 2.5μl
dNTP 0.5 μldNTP 0.5 μl
超纯水 19.75μlUltrapure water 19.75μl
总体积 25μlTotal volume 25μl
PCR反应程序为:95℃ 15 min;95℃ 30 s,58℃ 30 s,72℃ 1min,35个循环;72℃10 min;4℃保存。取3 μl PCR产物在1 %的琼脂糖凝胶上电泳,观察基因扩增情况,凝胶成像系统观察,拍照。选择条带单一清晰且长度正确的PCR产物对应的菌液送至北京华大基因测序;获得序列与上述thornlessSUS全长CDS序列相同。The PCR reaction program was: 95°C for 15 min; 35 cycles of 95°C for 30 s, 58°C for 30 s, and 72°C for 1 min; 72°C for 10 min; and storage at 4°
验证pRI-SUSGFP载体转化效果的PCR反应体系如下:The PCR reaction system for verifying the transformation effect of pRI-SUSGFP vector is as follows:
单菌落菌液 1 μl
SGFP-F5’- ACCCCTCATGGTTATTTCGCT -3’ 0.5μlSGFP-F5'- ACCCCTCATGGTTATTTCGCT-3' 0.5 μl
SGFP-R5’- TCACCTTGATGCCGTTCTTCT -3’ 0.5 μlSGFP-R5'-TCACCTTGATGCCGTTTCTTCT-3' 0.5 μl
Taq 0.25μlTaq 0.25μl
Taq Buffer 2.5μlTaq Buffer 2.5μl
dNTP 0.5μldNTP 0.5μl
超纯水 19.75μlUltrapure water 19.75μl
总体积 25μlTotal volume 25μl
PCR反应程序为:95 ℃ 15 min;95 ℃ 30 s;58 ℃ 30 s,72 ℃ 2.5 min,35个循环;72 ℃ 10min。取3 μl PCR产物在1 %的琼脂糖凝胶上电泳,观察基因扩增情况,凝胶成像系统观察,拍照。选择条带单一清晰且长度位置正确PCR产物对应的菌液送至北京华大基因测序;载体中SUSGFP融合基因序列如序列表SEQ ID NO.3所示。The PCR reaction program was: 95 °C for 15 min; 95 °C for 30 s; 58 °C for 30 s, 72 °C for 2.5 min, 35 cycles; 72 °C for 10 min. Take 3 μl of PCR products and electrophoresis on 1% agarose gel to observe the gene amplification, observe with gel imaging system, and take pictures. Select the bacterial solution corresponding to the PCR product with a single clear band and the correct length and position, and send it to Beijing Huada Gene for sequencing; the sequence of the SUSGFP fusion gene in the vector is shown in SEQ ID NO.3 in the sequence table.
重组载体(质粒)提取方法:将上述序列验证正确的DH5α菌种划线于Kana抗性(50mg/l)的LB固体培养基,置于37 ℃条件下培养至长出单菌落,挑取单菌落接种于液体LB培养基(50 mg/l Kana),于37 ℃,180 rpm活化,使用中科泰瑞生物科技有限公司的质粒提取试剂盒提取菌液质粒,具体操作步骤如下:Recombinant vector (plasmid) extraction method: Streak the DH5α strain with the correct sequence verified above on Kana-resistant (50 mg/l) LB solid medium, culture it at 37 °C until a single colony grows, and pick a single colony. Bacterial colonies were inoculated in liquid LB medium (50 mg/l Kana), activated at 37 °C, 180 rpm, and plasmids were extracted using the plasmid extraction kit from Zhongke Tairui Biotechnology Co., Ltd. The specific operation steps are as follows:
1)取4 ml过夜培养的菌液于离心管中,10000 rpm离心1 min,用移液枪尽量吸出上清液,通过两次离心将菌体收集到一个离心管中;1) Take 4 ml of overnight cultured bacterial solution in a centrifuge tube, centrifuge at 10,000 rpm for 1 min, suck out the supernatant as much as possible with a pipette gun, and collect the bacteria into a centrifuge tube through two centrifuges;
2)向菌体沉淀中加入250 μl溶液PI(事先加入RNaseA),5 μl Lysis Dye,此时溶液为红色,用涡旋振荡器彻底悬浮菌体;2) Add 250 μl solution PI (with RNaseA added in advance) and 5 μl Lysis Dye to the cell pellet. At this time, the solution is red. Suspend the cells thoroughly with a vortex shaker;
3)向离心管中加入250 μl溶液P2,温和地上下翻转6-8次,使菌体裂解;3) Add 250 μl solution P2 to the centrifuge tube, gently turn it up and down 6-8 times to lyse the bacteria;
4)向离心管中加入350 μl溶液P3,温和地上下翻转6-8次,充分混匀,此时出现黄色絮状沉淀,10000 rpm离心10 min;4) Add 350 μl solution P3 to the centrifuge tube, gently turn it up and down 6-8 times, and mix well. At this time, a yellow flocculent precipitate appears, and centrifuge at 10,000 rpm for 10 min;
5)用移液枪将上清液转移到吸附柱中(吸附柱放入收集管中),10000 rpm离心45s,弃废液;5) Use a pipette gun to transfer the supernatant to the adsorption column (the adsorption column is placed in the collection tube), centrifuge at 10000 rpm for 45s, and discard the waste liquid;
6)向吸附柱中加入700 μl PW(事先加入无水乙醇),10000 rpm离心45 s,弃废液;6) Add 700 μl PW (add absolute ethanol in advance) to the adsorption column, centrifuge at 10000 rpm for 45 s, and discard the waste liquid;
7)向吸附柱中加入500 μl PW(事先加入无水乙醇),10000 rpm离心45 s,弃废液;7) Add 500 μl PW (add absolute ethanol in advance) to the adsorption column, centrifuge at 10000 rpm for 45 s, and discard the waste liquid;
8)10000 rpm离心2 min;8) Centrifuge at 10000 rpm for 2 min;
9)将吸附柱放入干净的1.5 ml离心管中,加入60 μl溶液EB,室温放置2 min,10000 rpm离心2 min;9) Put the adsorption column into a clean 1.5 ml centrifuge tube, add 60 μl solution EB, place at room temperature for 2 minutes, and centrifuge at 10,000 rpm for 2 minutes;
将提取的质粒通过电泳等方法验证后置于-20 ℃保存,以备转化农杆菌感受态。The extracted plasmid was verified by electrophoresis and other methods and then stored at -20 °C in preparation for transformation of Agrobacterium competent.
实施例3 受体材料的制备Example 3 Preparation of acceptor material
从多株有刺成年黑果枸杞采集成熟种子,置于湿润无菌纱布中37 ℃催芽24 h后于超净工作台中进行表面杀菌(75%酒精处理30-60 S,0.1%升汞处理1-2 min,无菌清水冲洗3-5次),吸干表面水分后横向接种到1/2MS培养基(MS干粉2.37 g/l+20 g/l蔗糖+ 4.5-5.0g/l琼脂粉,pH值5.8-6.0)。完全黑暗23-27 ℃条件下待种子萌发后置于12 h光照/12 h黑暗的光周期条件下培养。光由LED灯管提供,强度为48 μmol/m2/s。待无菌种苗高度超过8cm且低于11cm时,将植株切为两部分:3-5 cm高的带顶茎和去顶带根下半部分。将两部分接入新鲜配置的不含有任何外源植物激素的1/2MS培养基,待上半部分生根,下半部分侧枝或根孽萌发,且株高达8-11 cm时,再次切下3-5 cm高的带顶茎,并将带顶上部和带根下部再次转接到新鲜配置的不含激素1/2MS培养基,株高再次达8-11 cm,继续按照上述方法切割转接。这样经过4代以上的转接,将生根、生长及繁殖相对快速的株系保留并分别做好标记。将上述繁殖筛选出的无性系幼嫩叶片的尖端部分剪下3-5 mm作为外植体,近轴面朝下接种到MS培养基(MS干粉4.74 g/l+蔗糖40 g/l+琼脂4.8-5.0 g/l, pH=5.8)。将此条件下能通过直接器官发生路径形成完整植株的无性系株系保留,并将直接器官发生获得植株的完全展开的幼嫩叶片尖端部分3-5 mm再次剪下作为外植体,近轴面朝下接种到MS培养基,待叶尖外植体通过直接器官发生形成植株之后,再次切叶尖外植体、接种、繁殖……如此进行10代以上的叶尖直接器官发生,将通过直接器官发生形成的幼嫩植株作为遗传转化的受体提供者。除种子萌发前置于黑暗条件下,其他培养的光周期等光照条件均同种子萌发后条件相同,温度均为25±2 ℃。所用MS干粉及琼脂粉均购自济南市中天组培园艺用品有限公司,蔗糖购自生工。调节pH值采用1M的NaOH(生工),培养基121℃高压灭菌20 min后置于培养室观察7 d,确定无菌且正常之后方可用于接种。Mature seeds were collected from several prickly adult Lycium barbarum berries, placed in moist sterile gauze at 37 ℃ for 24 h, and then sterilized on the surface in an ultra-clean workbench (75% alcohol for 30-60 s, 0.1% mercuric chloride for 1 -2 min, rinse with sterile water 3-5 times), blot the surface moisture and inoculate horizontally on 1/2 MS medium (MS dry powder 2.37 g/l+20 g/l sucrose+4.5-5.0 g/l agar powder, pH 5.8-6.0). After germination, the seeds were cultured under a photoperiod of 12 h light/12 h dark in complete darkness at 23-27 °C. Light is provided by LED tubes with an intensity of 48 μmol/m 2 /s. When the height of the aseptic seedling exceeds 8 cm and is lower than 11 cm, the plant is cut into two parts: the 3-5 cm high stem with the top and the lower half with the root without the top. Put the two parts into freshly prepared 1/2MS medium that does not contain any exogenous phytohormones, and when the upper part takes root, the lower part of side branches or roots germinates, and the height of the plant is 8-11 cm, cut off another 3 -5 cm high stems with tops, and transfer the upper part of the top and the lower part of the root to the freshly prepared hormone-free 1/2MS medium, and the plant height reaches 8-11 cm again, continue to cut and transfer according to the above method . In this way, through more than 4 generations of transfer, the relatively fast strains of rooting, growth and reproduction are retained and marked respectively. Cut off 3-5 mm from the tip part of the young leaves of the clones screened out above as explants, and inoculate them on MS medium (MS dry powder 4.74 g/l+ sucrose 40 g/l+ agar 4.8- 5.0 g/l, pH=5.8). Under these conditions, the clonal lines capable of forming complete plants through the direct organogenesis pathway were retained, and the 3-5 mm tips of the fully expanded young leaves of the plants obtained by direct organogenesis were cut again as explants, adaxial Inoculate MS medium face down, and after the leaf tip explants form plants through direct organogenesis, cut the leaf tip explants again, inoculate, and propagate... In this way, the leaf tip direct organogenesis of more than 10 generations will pass through Young plants with direct organogenesis serve as recipient donors for genetic transformation. Except that the seeds were placed under dark conditions before germination, the photoperiod and other light conditions for other cultures were the same as those after seed germination, and the temperature was 25±2 °C. The MS dry powder and agar powder used were purchased from Jinan Zhongtian Tissue Culture Gardening Supplies Co., Ltd., and the sucrose was purchased from Shenggong. 1M NaOH (Sanko) was used to adjust the pH value, and the medium was autoclaved at 121°C for 20 minutes and then placed in the culture room for observation for 7 days. It was confirmed that it was sterile and normal before it could be used for inoculation.
实施例4 选择培养基中卡那霉素筛选浓度的确定The determination of kanamycin screening concentration in the selection medium of
选取状态良好且发育基本一致的黑果枸杞无性系苗,在超净台中用无菌的剪子剪取幼嫩叶片尖端的一半作为外植体。将外植体背面朝上接种到含有不同浓度卡那霉素(Kana,生工)的MS培养基中(MS干粉 4.74 g/l+蔗糖40 g/l+琼脂4.8 g/l,pH=5.6-6.0),培养基的Kana浓度分别设置为0,1,2,3,4,5,6,7,8,9,10,15,20,25,30,35,40,50,100 mg/l,每个处理接种至少90个外植体。组培室温度为25±2 ℃,调节pH值采用1M的NaOH(生工),培养基121℃高压灭菌20 min后,尚未凝固之前添加过滤除菌(0.22 μm)的Kana母液。培养室光源为LED灯管,光周期为12 h光照/12 h黑暗。结果显示, 7 d后培养基中不添加Kana的对照组及Kanna浓度为1 mg/l,2 mg/l的黑果枸杞叶尖外植体开始生根,14 d后生根率达到最大,最高可达到100 %。10 d后Kanna浓度为3 mg/l的黑果枸杞叶片外植体开始生根,生根率为18.89 %,其余浓度仍无变化。28 d后不添加Kana的对照组及Kanna浓度为1 mg/l,2 mg/l的黑果枸杞叶片外植体开始生芽,生芽率分别为52.22 %,35.56 %,32.22 %。Kanna浓度为3mg/l的黑果枸杞叶片外植体生根后,在根长到1 cm左右时停止生长,且后续无任何芽体产生。接种一段时间后,除已经生芽的对照及Kanna浓度为1 -2 mg/l的黑果枸杞叶片外植体以外,其余处理的黑果枸杞叶片外植体逐渐死亡。Kanna浓度为3 mg/l的黑果枸杞叶片外植体虽然有短根产生,但是根伸长生长受到抑制,且不能产生任何芽体形成植株,最后叶片外植体也逐渐变黄死亡(图2)。因此,本试验选用添加Kanna浓度为3 mg/l的MS培养基作为初始选择培养基。该浓度可以达到筛选目的,且能降低对植物材料的伤害,以达到使转化成功的叶脉切口细胞尽可能生根出芽的目的。Select the clone seedlings of Lycium barbarum in good condition and basically the same development, and use sterile scissors to cut half of the tip of the young leaves in an ultra-clean bench as explants. The explants were inoculated backside up into MS medium containing different concentrations of kanamycin (Kana, Sanko) (MS dry powder 4.74 g/l+ sucrose 40 g/l+ agar 4.8 g/l, pH=5.6-6.0 ), the Kana concentration of the medium was set to 0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 15, 20, 25, 30, 35, 40, 50, 100 mg/l , at least 90 explants were inoculated per treatment. The temperature of the tissue culture room was 25±2°C, and the pH value was adjusted using 1M NaOH (Sanko). After the medium was autoclaved at 121°C for 20 minutes, filter-sterilized (0.22 μm) Kana mother solution was added before solidification. The light source in the culture room was an LED tube, and the photoperiod was 12 h light/12 h dark. The results showed that the control group without Kana added to the medium and the concentration of Kanna at 1 mg/l, 2 mg/l of Lycium barbarum leaf tip explants began to take root after 7 days, and the rooting rate reached the maximum after 14 days, and the highest up to 100%. After 10 days, the leaf explants of Lycium barbarum with a Kanna concentration of 3 mg/l began to take root, and the rooting rate was 18.89%, and the rest of the concentration remained unchanged. After 28 days, the control group without Kana and the explants of Lycium barbarum berries with Kanna concentrations of 1 mg/l and 2 mg/l began to sprout, and the germination rates were 52.22 %, 35.56 %, and 32.22 %, respectively. After rooting, the leaf explants of Lycium barbarum with a Kanna concentration of 3 mg/l stopped growing when the root length reached about 1 cm, and no buds were produced subsequently. After inoculation for a period of time, except for the budding control and the leaf explants of Lycium barbarum with Kanna concentration of 1-2 mg/l, the leaf explants of Lycium barbarum of other treatments died gradually. Although the leaf explants of Lycium barbarum with a Kanna concentration of 3 mg/l produced short roots, the elongation and growth of the roots were inhibited, and no buds could be produced to form plants, and finally the leaf explants gradually turned yellow and died (Fig. 2). Therefore, MS medium supplemented with Kanna concentration of 3 mg/l was selected as the initial selection medium in this experiment. This concentration can achieve the purpose of screening, and can reduce the damage to the plant material, so as to achieve the purpose of making the successfully transformed leaf vein incision cells take root and sprout as much as possible.
实施例5 头孢噻肟钠使用浓度的确定
采用沈阳农业大学张志宏教授课题组保存的根瘤农杆菌菌株EHA105和LBA4404。将存放在-80℃冰箱的农杆菌置于冰上静置融化,在超净工作台中用无菌的接种丝蘸取少量菌液,划线培养在含有50 mg/l 利福平(Rif)的YEP固体培养基上,27-28 ℃倒置培养2-3d;在超净工作台中用无菌的白色枪头挑取农杆菌单菌落,加入到含有50 mg/l Rif的YEP液体培养基中,27-28 ℃,180-200 rpm震荡培养10 h至OD600约为0.5左右,吸取约100 μl菌液均匀涂抹在含有50 mg/l Rif的YEP固体培养基。将圆形的小滤纸片分别用100、150、200、250、300、350、400、450和500 mg/l的头孢噻肟钠(Cef)溶液浸湿,并置于上述涂抹均匀的固体培养基,27-28 ℃条件下静置过夜培养。过夜观察发现浸有≥300 mg/l Cef溶液的滤纸能够完全抑制农杆菌EHA105和LBA4404生长。故300 mg/l选作筛选培养基中Cef的使用浓度,以抑制农杆菌的再次爆发。500 mg/l选做洗涤液中的Cef的浓度。在单独使用Cef抑制农杆菌的实验中,如发现有农杆菌长出,可联合使用300 mg/l羧苄青霉素和300-700 mg/l的Cef以达到更强的抑制效果。Agrobacterium tumefaciens strains EHA105 and LBA4404 preserved by the research group of Professor Zhang Zhihong of Shenyang Agricultural University were used. Put the Agrobacterium stored in the -80°C refrigerator on ice and let it melt, dip a small amount of bacterial liquid with a sterile inoculation wire in the ultra-clean workbench, and culture it in a line containing 50 mg/l rifampicin (Rif) On the YEP solid medium, cultivate it upside down at 27-28 ℃ for 2-3 days; pick a single colony of Agrobacterium with a sterile white tip in the ultra-clean workbench, and add it to the YEP liquid medium containing 50 mg/l Rif , 27-28 ℃, 180-200 rpm shaking culture for 10 h until OD600 is about 0.5, pipette about 100 μl of bacterial liquid and spread evenly on YEP solid medium containing 50 mg/l Rif. Soak the circular small filter paper pieces with 100, 150, 200, 250, 300, 350, 400, 450 and 500 mg/l cefotaxime sodium (Cef) solutions respectively, and place them on the above-mentioned uniformly smeared solid culture cultured overnight at 27-28°C. Overnight observation found that filter paper soaked with ≥300 mg/l Cef solution could completely inhibit the growth of Agrobacterium EHA105 and LBA4404. Therefore, 300 mg/l was selected as the concentration of Cef in the screening medium to inhibit the outbreak of Agrobacterium again. 500 mg/l was selected as the concentration of Cef in the washing solution. In the experiment of using Cef alone to inhibit Agrobacterium, if it is found that Agrobacterium grows, 300 mg/l carbenicillin and 300-700 mg/l Cef can be used in combination to achieve a stronger inhibitory effect.
实施例6 农杆菌感受态的制备Example 6 Preparation of Competent Agrobacterium
将存放在-80 ℃冰箱的农杆菌EHA105,LBA4404(沈阳农业大学张志宏教授课题组保存)冰上静置融化,在超净工作台中用无菌的接种丝蘸取少量菌液,划线培养在含有50mg/l Rif的YEP固体培养基上,27-28 ℃倒置培养2-3 d;在超净工作台中用无菌的白色枪头挑取农杆菌EHA105,LBA4404单菌落,加入到含有50 mg/l Rif的YEP液体培养基中,28℃,180 rpm震荡培养10 h至OD600约为0.5左右,在超净工作台中取5 ml已经活化好的菌液加入到无菌的50 ml离心管中,冰上静置10 min;4 ℃,5000 rpm离心10 min,用移液枪吸去上清液;在超净工作台中向离心管中加入5 ml提前在冰上预冷的25 mM的CaCl2溶液(过滤器过滤除菌)将菌体重悬,冰上静置20 min,4 ℃,5000 rpm离心10 min,弃上清液;在超净工作台中向离心管中加入1 ml提前预冷的25 mM的CaCl2溶液,再次重悬菌体,冰上静置20min,农杆菌感受态细胞经液氮速冻后-80 ℃保存备用。Agrobacterium EHA105 and LBA4404 (preserved by the research group of Professor Zhang Zhihong of Shenyang Agricultural University) stored in the refrigerator at -80 ℃ were left to melt on ice, and a small amount of bacterial liquid was dipped in a sterile inoculation wire in the ultra-clean workbench, and cultured by streaking on the On the YEP solid medium containing 50mg/l Rif, cultivate it upside down at 27-28 ℃ for 2-3 days; use a sterile white tip to pick up a single colony of Agrobacterium EHA105 and LBA4404 in the ultra-clean workbench, and add it to the culture medium containing 50 mg /l Rif’s YEP liquid medium, 28°C, 180 rpm shaking culture for 10 h until the OD 600 is about 0.5, take 5 ml of the activated bacterial liquid in the ultra-clean workbench and add it to a sterile 50 ml centrifuge tube Place on ice for 10 min; centrifuge at 5,000 rpm for 10 min at 4°C, and remove the supernatant with a pipette; add 5 ml of 25 mM pre-cooled on ice to the centrifuge tube in an ultra-clean workbench. Resuspend the bacteria in CaCl 2 solution (sterilized by filter), let stand on ice for 20 min, centrifuge at 5000 rpm for 10 min at 4 °C, discard the supernatant; add 1 ml pre-prepared Cold 25 mM CaCl 2 solution was used to resuspend the cells again, and let it stand on ice for 20 minutes. Agrobacterium competent cells were quick-frozen in liquid nitrogen and stored at -80°C for later use.
实施例7 重组载体转化农杆菌Example 7 Transformation of Agrobacterium with recombinant vector
在超净台中用移液枪吸取5 μl重组载体(pRI-GFP,pRI-SUS或pRI-SUSGFP)加入到50 μl农杆菌EHA105,LBA4404感受态中,轻轻混匀;冰上静置5 min,放入液氮中速冻1 min;37 ℃水浴5 min,冰浴2 min;在超净工作台中向离心管中加入800 μl YEP液体培养基,28℃,180 rpm震荡培养4 h,5000 rpm室温下离心5 min,用移液枪吸取多余的液体培养基,约留100 μl的液体,重悬菌体,将菌液用无菌的涂菌棒涂布在含有50 mg/l Rif和50 mg/lKana的YEP固体培养基上,27-28 ℃倒置培养2-3 d;在超净工作台中用无菌的接种丝挑取农杆菌单菌落,均匀涂抹在含有50 mg/l Rif和50 mg/l Kana的YEP固体培养基上,28 ℃倒置培养1-2 d;在超净工作台中用白色枪头挑取二转的农杆菌菌苔,通过PCR的方法检验重组质粒是否转入农杆菌感受态,PCR反应体系(菌苔代替菌液,超纯水补充体积到25 μl)和程序与1.2中检验重组质粒是否转入大肠杆菌感受态DH5α中相同;根据电泳结果,选取与目的片段条带长度一致的二转菌落,在28 ℃,180 rpm的摇床上,用含有50 mg/l Rif和50mg/l Kana的5 ml YEP液体培养基中震荡培养,用灭过菌的甘油与菌液1:1保存,用于测序和侵染等后续实验。将测序验证正确的菌种用于后续遗传转化,将含有各种载体的工程菌分别简称为EHA105pRI-GFP、EHA105pRI-SUS、EHA105pRI-SUSGFP、LBA4404pRI-GFP、LBA4404pRI-SUS和LBA4404pRI-SUSGFP。
实施例8 农杆菌介导的遗传转化Example 8 Agrobacterium-mediated genetic transformation
一、菌液的制备和侵染1. Preparation and infection of bacterial solution
在超净工作台中,用无菌的接种丝蘸取少量EHA105pRI-GFP、EHA105pRI-SUS、EHA105pRI-SUSGFP、LBA4404pRI-GFP、LBA4404pRI-SUS或LBA4404pRI-SUSGFP菌种,划线培养在含有50mg/l Rif和50mg/l Kana的YEP固体培养基上,于27-28 ℃条件下倒置培养2-3 d;在超净台中,用白色枪头挑取农杆菌单菌落,用含有50mg/l Rif和50mg/l Kana的5ml YEP液体培养基中震荡培养18h;在超净台中,用移液枪吸取1ml活化好的菌液加入到50 ml含有50 mg/l Rif和50 mg/l Kana的5 ml YEP液体培养基中继续震荡培养至EHA105pRI-GFP、EHA105pRI-SUS和EHA105pRI-SUSGFP菌液的OD600值为0.39-0.61,而LBA4404pRI-GFP、LBA4404pRI-SUS或LBA4404pRI-SUSGFP菌液的OD600值为0.39-0.80时,4℃,5000 rpm离心5 min,弃上清液,在超净台中用灭过菌的MS液体培养基(MS干粉 4.74 g/l+蔗糖40 g/l,pH=5.8)1:1重悬菌体,冰上放置1h备用。用MS液体培养基重悬菌体前加入过滤除菌的乙酰丁香酮(AS)致使其终浓度为100 μM,以增加转化效率。In the ultra-clean workbench, dip a small amount of EHA105 pRI-GFP , EHA105 pRI-SUS , EHA105 pRI-SUSGFP , LBA4404 pRI-GFP , LBA4404 pRI-SUS or LBA4404 pRI-SUSGFP strains with sterile inoculation silk, and culture them in streaks On the YEP solid medium containing 50mg/l Rif and 50mg/l Kana, culture it upside down at 27-28 ℃ for 2-3 days; in the ultra-clean bench, pick a single colony of Agrobacterium with a white tip, and use 50mg/l Rif and 50mg/l Kana in 5ml YEP liquid culture medium with shaking for 18h; l Continue shaking culture in 5 ml YEP liquid medium of Kana until the OD 600 value of EHA105 pRI-GFP , EHA105 pRI-SUS and EHA105 pRI-SUSGFP bacteria liquid is 0.39-0.61, while LBA4404 pRI-GFP , LBA4404 pRI-SUS or When the OD 600 value of the LBA4404 pRI-SUSGFP bacterial solution is 0.39-0.80, centrifuge at 5000 rpm for 5 min at 4°C, discard the supernatant, and use sterilized MS liquid medium (MS dry powder 4.74 g/l+ Sucrose 40 g/l, pH=5.8) 1:1 resuspend the bacteria, keep on ice for 1h for later use. Add filter-sterilized acetosyringone (AS) to a final concentration of 100 μM before resuspending the cells in MS liquid medium to increase transformation efficiency.
将重悬的菌液倒入灭过菌的培养皿中,将没有经过预培养,预培养1d,预培养2d的黑果枸杞叶尖外植体置于滤纸吸干水分后,分别加入到含有菌液的培养皿中侵染。以上6种菌的侵染时间均设置为5~15min。侵染过程中每隔一段时间轻轻晃动培养皿,促进农杆菌侵染黑果枸杞叶片外植体。侵染结束后,将黑果枸杞叶尖外植体用镊子转移到无菌的滤纸上,吸干多余菌液。以上操作均在超净台中进行。预培养在25±2 ℃的组培室内黑暗条件下进行,同样采用叶尖外植体,背面朝上接种,预培养培养基为MS培养基(MS干粉 4.74 g/l+蔗糖40 g/l+琼脂4.8 g/l),pH值采用NaOH调整到5.8,121℃高压灭菌20min。Pour the resuspended bacterial solution into a sterilized Petri dish, place the leaf tip explants of Lycium barbarum berries that have not been pre-cultivated, pre-cultivated for 1 day, and pre-cultured for 2 days, and put them on filter paper to absorb the water, and then add them to containing Infection in the Petri dish of bacterial liquid. The infection time of the above 6 kinds of bacteria was set at 5-15min. During the infection process, the petri dish was gently shaken at regular intervals to promote the Agrobacterium infection of the leaf explants of Lycium barbarum. After the infection, the leaf tip explants of Lycium barbarum black fruit were transferred to sterile filter paper with tweezers, and the excess bacterial solution was blotted dry. All the above operations were carried out in a clean bench. Pre-cultivation was carried out under dark conditions in a tissue culture room at 25±2°C. Leaf tip explants were also used and inoculated with the back facing up. The pre-cultivation medium was MS medium (MS dry powder 4.74 g/l+sucrose 40 g/l+agar 4.8 g/l), the pH value was adjusted to 5.8 with NaOH, and autoclaved at 121°C for 20 minutes.
二、共培养2. Co-cultivation
将吸干菌液的黑果枸杞叶尖外植体用无菌的镊子采用背面朝上方式接种到共培养培养基中(MS干粉 4.74 g/l+蔗糖40 g/l+琼脂4.8 g/l+100 μM AS,pH=5.8),每个培养皿放置22-23个外植体。继续于上述组培室内暗培养2-3 d,直至叶片外植体周围长出白色农杆菌。Inoculate the leaf tip explants of Lycium barbarum black fruit that had been sucked dry into the co-cultivation medium (MS dry powder 4.74 g/l+ sucrose 40 g/l+ agar 4.8 g/l+100 μM AS, pH=5.8), place 22-23 explants per dish. Continue the dark culture in the above-mentioned tissue culture room for 2-3 days until white Agrobacterium grows around the leaf explants.
三、选择培养和抗性植株的产生3. Selective culture and generation of resistant plants
结束共培养后,用含有500 mg/l 的Cef(0.22 μm无菌滤膜过滤除菌)的无菌水清洗黑果枸杞叶片外植体5-6次,直至外植体周围无农杆菌。将清洗干净的叶尖外植体用镊子转移至无菌的滤纸上,吸干多余的液体后背面朝上接种到选择培养基(MS干粉 4.74 g/l+蔗糖40 g/l+琼脂4.8 g/l+3 mg/l Kana+300 mg/l Cef,pH=5.8)中。培养室光照等条件与“卡那霉素筛选浓度的确定”部分相同。每7 d将更换一次选择培养基。选择培养过程中,培养基中加Kana进行筛选,尽量避免出现逃逸植株。实验设置严格的对照组。经过转化的黑果枸杞叶尖外植体,筛选培养10 d后开始生根,17d后生根率达到最高,而未经过转化的黑果枸杞叶尖外植体在具有Kana(3 mg/l)抗性的选择培养基上逐渐黄化死亡;筛选培养28 d后生根叶尖外植体的根基部开始生芽形成完整抗性小植株(图3)。数据统计显示:(1)EHA105pRI-GFP遗传转化率高达8.33%;(2)LBA4404pRI-GFP遗传转化率高达8.33%;(3)LBA4404pRI-SUS遗传转化率高达16.65%;(4)EHA105pRI-SUSGFP遗传转化率高达8.33%;(5)LBA4404pRI-SUSGFP遗传转化率高达8.33%;(6) EHA105pRI-SUS遗传转化率高达8.33%。上述转化率=筛选培养基上叶尖外植体出芽率/非转基因条件下叶尖外植体的平均出芽率(对照)*100%。本方法未经愈伤阶段获得抗性植株,减少侵染农杆菌再次爆发的危险,周期短,且抗性植株生长健壮。After co-cultivation, the explants of Lycium barbarum leaves were washed 5-6 times with sterile water containing 500 mg/l Cef (0.22 μm sterile filter membrane filtration), until there was no Agrobacterium around the explants. Transfer the cleaned leaf tip explants to sterile filter paper with tweezers, blot the excess liquid and inoculate the selective medium (MS dry powder 4.74 g/l+ sucrose 40 g/l+ agar 4.8 g/l +3 mg/l Kana+300 mg/l Cef, pH=5.8). Conditions such as light in the culture room are the same as those in the "Determination of Kanamycin Screening Concentration". The selection medium will be replaced every 7 days. During the selective cultivation process, Kana was added to the culture medium for screening to avoid escape plants as much as possible. A strict control group was set up in the experiment. The transformed leaf tip explants of Lycium barbarum black fruit began to root after 10 days of selection and culture, and the rooting rate reached the highest after 17 days, while the leaf tip explants of untransformed Lycium barbarum berries were resistant to Kana (3 mg/l). Gradually yellowed and died on the selective medium; after 28 days of selective culture, the roots of the rooted leaf tip explants began to sprout and form complete resistant plantlets (Fig. 3). Statistics show: (1) EHA105 pRI-GFP genetic transformation rate is as high as 8.33%; (2) LBA4404 pRI-GFP genetic transformation rate is as high as 8.33%; (3) LBA4404 pRI-SUS genetic transformation rate is as high as 16.65%; (4) EHA105 The genetic transformation rate of pRI-SUSGFP was as high as 8.33%; (5) the genetic transformation rate of LBA4404 pRI-SUSGFP was as high as 8.33%; (6) the genetic transformation rate of EHA105 pRI-SUS was as high as 8.33%. The above transformation rate=germination rate of leaf tip explants on screening medium/average germination rate of leaf tip explants under non-transgenic conditions (control)*100%. The method obtains resistant plants without a callus stage, reduces the risk of outbreak of Agrobacterium infection again, has a short period, and the resistant plants grow robustly.
四、二次筛选抗性植株4. Secondary screening of resistant plants
为了更加有效避免逃植株的产生,我们进行了二次筛选实验;具体方法是,待上述抗性芽长至高度5 cm左右时,在超净台中,剪取2 cm左右带顶芽茎,接种到抗性生根培养基(MS干粉 2.37 g/l+蔗糖20 g/l+琼脂4.8 g/l+5 mg/l Kana+300 mg/l Cef,pH=5.8)中;经过30 d的培养后,抗性芽生根并能正常生长(图3),不能生根的视为逃逸芽被淘汰。实验设置严格对照组;结果显示几乎所有上步(选择培养)筛选出的抗性材料均能产生根二次形成完整抗性植株。In order to avoid the emergence of escaped plants more effectively, we conducted a secondary screening experiment; the specific method is, when the above-mentioned resistant buds grow to a height of about 5 cm, cut about 2 cm of terminal bud stems in an ultra-clean bench, and inoculate into the resistant rooting medium (MS dry powder 2.37 g/l+sucrose 20 g/l+agar 4.8 g/l+5 mg/l Kana+300 mg/l Cef, pH=5.8); after 30 days of culture, the resistant Sexual buds take root and can grow normally (Figure 3), and those that cannot take root are regarded as escaped buds and are eliminated. A strict control group was set in the experiment; the results showed that almost all the resistant materials screened in the previous step (selection culture) could produce roots and form complete resistant plants.
实施例9 转基因植株的验证Example 9 Verification of transgenic plants
从DNA(PCR)、RNA(RT-PCR)和蛋白(激光共聚焦显微观察GFP)水平对以上筛选出的抗性植株进行鉴定。The resistant plants screened above were identified from the levels of DNA (PCR), RNA (RT-PCR) and protein (observation of GFP by laser confocal microscopy).
一、DNA水平检测1. DNA level detection
用CTAB法提取抗性植株及未经过转化对照材料的DNA。具体操作步骤如下:The DNA of resistant plants and untransformed control materials was extracted by CTAB method. The specific operation steps are as follows:
1)分别取100 mg抗性及对照植株叶片于500 μl裂解液中研磨,收集于2 ml离心管中;1) Grind 100 mg leaves of resistant and control plants in 500 μl lysate, and collect them in 2 ml centrifuge tubes;
2)65 ℃水浴30 min,中间颠倒混匀数次;2) Water bath at 65 ℃ for 30 minutes, invert and mix several times in the middle;
3)向离心管中加入等体积的500 μl DNA抽提剂,颠倒混匀;3) Add an equal volume of 500 μl DNA Extraction Reagent to the centrifuge tube and mix by inverting;
4)12000 rpm离心10 min;4) Centrifuge at 12000 rpm for 10 min;
5)用移液枪吸取上清液于另一个干净的2ml离心管中,加入0.7倍体积350 μl的异丙醇,颠倒混匀,冰浴5 min;5) Use a pipette gun to draw the supernatant into another clean 2ml centrifuge tube, add 0.7 times the volume of 350 μl isopropanol, invert to mix, and ice-bath for 5 minutes;
6)12000 rpm离心2 min,弃上清液,管口向下倒置1 min,去除异丙醇;6) Centrifuge at 12000 rpm for 2 min, discard the supernatant, and invert the tube for 1 min to remove isopropanol;
7)加入500 μl的70 %的无水乙醇漂洗沉淀,12000 rpm离心1 min,弃上清液;7) Add 500 μl of 70% absolute ethanol to rinse the pellet, centrifuge at 12000 rpm for 1 min, and discard the supernatant;
8)重复步骤7);8) Repeat step 7);
9)用移液枪尽量吸出残留的无水乙醇,室温放置数分钟,去除残留的无水乙醇;9) Use a pipette gun to suck out the residual absolute ethanol as much as possible, and leave it at room temperature for several minutes to remove the residual absolute ethanol;
10)加入50 μl的TE溶解DNA沉淀,-20 ℃保存。10) Add 50 μl of TE to dissolve the DNA pellet and store at -20°C.
取3 μl DNA在1 %的琼脂糖凝胶上电泳,观察DNA提取情况,凝胶成像系统观察,拍照。Take 3 μl of DNA and electrophoresis on 1% agarose gel, observe the DNA extraction, observe with a gel imaging system, and take pictures.
以提取的DNA为模板,通过PCR扩增验证转化植株是否为阳性植株。转化pRI-SUSGFP重组载体的植株PCR验证所用引物,PCR反应体系及PCR反应程序与验证重组载体是否转入感受态细胞相同。转化pRI-SUS重组载体的植株PCR验证所用引物为根据Npt II基因部分序列所设计的引物,PCR反应体系如下:Using the extracted DNA as a template, verify whether the transformed plants are positive plants by PCR amplification. The primers, PCR reaction system and PCR reaction procedure used for the PCR verification of plants transformed with the pRI-SUSGFP recombinant vector are the same as those for verifying whether the recombinant vector is transferred into competent cells. The primers used for the PCR verification of the plants transformed with the pRI-SUS recombinant vector are primers designed according to the partial sequence of the Npt II gene. The PCR reaction system is as follows:
DNA 1 μl
Primer-F (Npt II-F) 0.5μlPrimer-F (Npt II-F) 0.5μl
Primer-R (Npt II-R) 0.5 μlPrimer-R (Npt II-R) 0.5 μl
Taq 0.25 μlTaq 0.25 μl
Taq Buffer 2.5 μlTaq Buffer 2.5 μl
dNTP 0.5 μldNTP 0.5 μl
超纯水 19.75 μlUltrapure water 19.75 μl
总体积 25 μlTotal volume 25 μl
PCR反应程序为:95 ℃ 5 min;95 ℃ 30 s;58 ℃ 30 s,72 ℃ 2 min,35个循环;72 ℃ 10min;4 ℃保存。取3 μl PCR产物在1 %的琼脂糖凝胶上电泳,观察基因扩增情况,凝胶成像系统观察,拍照。The PCR reaction program was: 95°C for 5 min; 95°C for 30 s; 58°C for 30 s, 72°C for 2 min, 35 cycles; 72°C for 10 min; 4°C for storage. Take 3 μl of PCR products and electrophoresis on 1% agarose gel to observe the gene amplification, observe with gel imaging system, and take pictures.
结果发现pRI-SUS转化的抗性植株在4500 bp处扩增出条带,并且条带长度与阳性对照(pRI-SUS载体质粒)一致,未经过转化的对照植株在相同位置上无条带(图4),初步证明获得过表达SUS基因的黑果枸杞转基因植株;被pRI-SUSGFP转化的抗性株植株,扩增出的条带长度与阳性对照(pRI-SUSGFP载体质粒)一致,初步证明获得转融合基因植株(图5中的3、4泳道)。The results showed that the pRI-SUS transformed resistant plants amplified a band at 4500 bp, and the length of the band was consistent with that of the positive control (pRI-SUS vector plasmid), while the untransformed control plants had no band at the same position ( Fig. 4), it is preliminarily proved that the transgenic plants of Lycium barbarum overexpressing the SUS gene were obtained; the length of the amplified band of the resistant plants transformed with pRI-SUSGFP was consistent with that of the positive control (pRI-SUSGFP vector plasmid), which was preliminarily proved The transfused gene plants were obtained (
二、RNA水平检测2. RNA level detection
利用RNA提取试剂盒Ultrapure RNA Kit,提取抗性及对照植株根、茎、叶的总RNA。使用M-mlV Reverse Transcriptase(M1701)合成cDNA。具体操作步骤与上面相同。The RNA extraction kit Ultrapure RNA Kit was used to extract the total RNA of roots, stems and leaves of resistant and control plants. cDNA was synthesized using M-mlV Reverse Transcriptase (M1701). The specific operation steps are the same as above.
用微量核酸蛋白测定仪检测cDNA浓度,以稀释到相同浓度的cDNA为模板,用内参基因检测cDNA是否可用。PCR反应体系如下:Use a micronucleic acid protein analyzer to detect the cDNA concentration, use the cDNA diluted to the same concentration as a template, and use the internal reference gene to detect whether the cDNA is available. The PCR reaction system is as follows:
cDNA 1 μl
Primer-F (Actin-F) 0.5 μlPrimer-F (Actin-F) 0.5 μl
Primer-R (Actin-R) 0.5 μlPrimer-R (Actin-R) 0.5 μl
Taq 0.25 μlTaq 0.25 μl
Taq Buffer 2.5 μlTaq Buffer 2.5 μl
dNTP 0.5 μldNTP 0.5 μl
超纯水 19.75 μlUltrapure water 19.75 μl
总体积 25 μlTotal volume 25 μl
PCR反应程序为:95 ℃ 5 min;95 ℃ 30 s;58 ℃ 30 s,72 ℃ 30 s,30个循环;72 ℃ 10 min;4 ℃保存。取3 μl PCR产物在1 %的琼脂糖凝胶上电泳,观察基因扩增情况,凝胶成像系统观察,拍照。The PCR reaction program was: 95°C for 5 min; 95°C for 30 s; 30 cycles of 58°C for 30 s and 72°C for 30 s; 72°C for 10 min; and storage at 4°
选用经过验证可用的稀释到相同浓度的cDNA为模板,用半定量PCR的方法验证转化植株目的基因表达情况。PCR反应体系如下:The verified and available cDNA diluted to the same concentration was selected as a template, and the expression of the target gene in the transformed plant was verified by semi-quantitative PCR. The PCR reaction system is as follows:
PCR反应程序为:95℃ 5min;95℃ 30s;58 ℃ 30 s,72℃ 1min,30个循环;72℃10min;4℃保存;取3 μl PCR产物在1 %的琼脂糖凝胶上电泳,对比观察目标条带的亮度,凝胶成像系统观察,拍照;结果显示,转基因抗性植株的根、茎、叶中thornlessSUS基因表达水平明显高于未经转化的对照(图6);说明经过转化,目标基因thornlessSUS在黑果枸杞根茎叶中均呈现过量表达(转录)。The PCR reaction program was: 95°C for 5 min; 95°C for 30 s; 58°C for 30 s, 72°C for 1 min, 30 cycles; 72°C for 10 min; 4°C storage; 3 μl of PCR products were electrophoresed on 1% agarose gel, Compare and observe the brightness of the target band, observe with the gel imaging system, and take pictures; the results show that the expression level of the thornlessSUS gene in the roots, stems, and leaves of the transgenic resistant plants is significantly higher than that of the untransformed control (Figure 6); , the target gene thornlessSUS was overexpressed (transcribed) in the roots, stems and leaves of Lycium barbarum.
三、GFP荧光检测3. GFP fluorescence detection
在超净台中,用无菌的剪子剪取经载体pRI-GFP和pRI-SUSGFP转化的抗性植株叶片及没经过转化的对照植株叶片,用解剖刀横向剖开叶片,用激光共聚焦显微镜,在550 nm的波长下观察是否有GFP表达。注意控制对照和抗性材料的观察条件完全一致。结果显示被GFP和融合基因SUSGFP转化的抗性植株中均有GFP蛋白表达(图7)。In the ultra-clean bench, use sterile scissors to cut the leaves of the resistant plants transformed with the vectors pRI-GFP and pRI-SUSGFP and the leaves of the control plants that have not been transformed, and cut the leaves horizontally with a scalpel. GFP expression was observed at a wavelength of 550 nm. Note that the observation conditions for the control control and the resistant material are exactly the same. The results showed that GFP protein was expressed in the resistant plants transformed by GFP and fusion gene SUSGFP (Fig. 7).
四、转基因植株的性状改变4. Changes in traits of transgenic plants
本发明发现,CaMV 35S启动子控制下GFP基因在黑果枸杞中异源组成型高表达,可以对植株产生毒副作,瓶内植株出现生长缓慢等不利性状,但是当GFP与thornlessSUS融合为SUS-GFP,并稳定转化黑果枸杞时,成功转基因植株可以正常生长,证明融合了thornlessSUS的GFP,即便仍然呈组成型高表达,对黑果枸杞的毒副作用也显著降低。组成型高表达thornlessSUS的黑果枸杞植株表现出茎干粗、分根孽能力强、须根数量大增等特点(图3D)。The present invention finds that under the control of the
序列表sequence listing
<110> 沈阳农业大学<110> Shenyang Agricultural University
<120> 一种黑果枸杞稳定遗传转化体系及其应用<120> A Stable Genetic Transformation System of Lycium barbarum Black Fruit and Its Application
<160> 3<160> 3
<170> SIPOSequenceListing 1.0<170> SIPOSequenceListing 1.0
<210> 1<210> 1
<211> 2412<211> 2412
<212> DNA<212>DNA
<213> 黑果枸杞(Lycium ruthenicum Murr.)<213> Lycium ruthenicum Murr.
<400> 1<400> 1
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aagacacttt ctgactccat tggtaatggt ttggagtttc ttaatcgcca tattgcttca 480aagacacttt ctgactccat tggtaatggt ttggagtttc ttaatcgcca tattgcttca 480
acaatgttcc atgacaagga gattgccaag tgcctccttg actttctcag acagcataac 540acaatgttcc atgacaagga gattgccaag tgcctccttg actttctcag acagcataac 540
tacaaaggaa agtcattgat ggtgaaagaa agcatccaaa gcctggaaag tttccaatat 600tacaaaggaa agtcattgat ggtgaaagaa agcatccaaa gcctggaaag tttccaatat 600
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gtgcaagaaa caatctgtca tttgttgcac ctccttgagg ctcctaatgc atcttccttg 780gtgcaagaaa caatctgtca tttgttgcac ctccttgagg ctcctaatgc atcttccttg 780
gaaaaattcc ttggaagaat cccattggtt ttcaatgttg tcattctcac ccctcatggt 840gaaaaattcc ttggaagaat cccattggtt ttcaatgttg tcattctcac ccctcatggt 840
tatttcgctc aagaaaacgt ccttggttat cccgacactg gtggccaggt tgtgtacatt 900tatttcgctc aagaaaacgt ccttggttat cccgacactg gtggccaggt tgtgtacatt 900
cttgatcaag ttccagccat ggagcgtgag atgcttctcc gtttgaagct tcaaggactt 960cttgatcaag ttccagccat ggagcgtgag atgcttctcc gtttgaagct tcaaggactt 960
gatgatatcc tcccccggat ccttgttgta acaaggctgc tgcctgatgc agttggaacc 1020gatgatatcc tcccccggat ccttgttgta acaaggctgc tgcctgatgc agttggaacc 1020
acttgtggtg agcgcatgga gaaagtatat ggggcagagc attctcatat tattcgtgtt 1080acttgtggtg agcgcatgga gaaagtatat ggggcagagc attctcatat tattcgtgtt 1080
ccatttagaa ctgagaaagg aatgttgcgc aaatggatct caagattcga agtctggcca 1140ccatttagaa ctgagaaagg aatgttgcgc aaatggatct caagattcga agtctggcca 1140
tacatggaaa ctttcactga ggatgtcgcg gaagaacttg tcaaagagct gcaagctaaa 1200tacatggaaa ctttcactga ggatgtcgcg gaagaacttg tcaaagagct gcaagctaaa 1200
ccagacttga tcattggaaa ctacagtgag ggaaaccttg ctgcctcctt gttggctaag 1260ccagacttga tcattggaaa ctacagtgag ggaaaccttg ctgcctcctt gttggctaag 1260
aaatttgggg ctactcaatg cacaatagct catgccttgg agaaaaccaa gtatccaaac 1320aaatttgggg ctactcaatg cacaatagct catgccttgg agaaaaccaa gtatccaaac 1320
tctgaccttt actggaagaa atttgatgac aagtatcatt tctcaagtca gttcagtgct 1380tctgaccttt actggaagaa atttgatgac aagtatcatt tctcaagtca gttcagtgct 1380
gatctttttg cgatgaatca cactgatttc atcatcacca gcactttcca agaaatcgct 1440gatctttttg cgatgaatca cactgatttc atcatcacca gcactttcca agaaatcgct 1440
ggaagcaaga atactgtagg gcagtatgag agccacactg cttttaccat gcctggattg 1500ggaagcaaga atactgtagg gcagtatgag agccaacactg cttttaccat gcctggattg 1500
taccgagtag tccatggaat tgattcattt gatccaaaat tcaacattgt ctcccctggg 1560taccgagtag tccatggaat tgattcattt gatccaaaat tcaacattgt ctcccctggg 1560
gctgatatgt cgatctactt cccttacaca gaaaaggaaa aaaggctaaa caatttccac 1620gctgatatgt cgatctactt cccttacaca gaaaaggaaa aaaggctaaa caatttccac 1620
ccggaaattg aagaactact ctacagtcct gttgagaaca aagagcacct atgtgtgttg 1680ccggaaattg aagaactact ctacagtcct gttgagaaca aagagcacct atgtgtgttg 1680
aaggaccgga acaagccaat tctcttcacc atggcaaggc tagatcgcgt gaagaatcta 1740aaggaccgga acaagccaat tctcttcacc atggcaaggc tagatcgcgt gaagaatcta 1740
acagggctcg ttgaatggta tgccaagaat gcaaggctga gagagcttgt taaccttgtg 1800acagggctcg ttgaatggta tgccaagaat gcaaggctga gagagcttgt taaccttgtg 1800
gttgttggtg gagacagaag gaaagaatcc aaggatttgg aagagcaagc agagatgaaa 1860gttgttggtg gagacagaag gaaagaatcc aaggatttgg aagagcaagc agagatgaaa 1860
aaaatgtatg accttattga aacctacaac ctgaatggac aattcaggtg gatttcttct 1920aaaatgtatg accttattga aacctacaac ctgaatggac aattcaggtg gatttcttct 1920
cagatgaatc gtataaggaa cggagagctt taccgatata ttgcagacac gaggggtgct 1980cagatgaatc gtataaggaa cggagagctt taccgatata ttgcagacac gaggggtgct 1980
ttcgttcagc cagctttcta cgaggctttc ggtttgacag ttgttgaatc catgacttgt 2040ttcgttcagc cagctttcta cgaggctttc ggtttgacag ttgttgaatc catgacttgt 2040
ggtttgccaa cttttgctac ttgtaatggt ggaccatttg agattatagt gcatggaaaa 2100ggtttgccaa cttttgctac ttgtaatggt ggaccatttg agattatagt gcatggaaaa 2100
tctggattcc acattgaccc taatcagggt gacaggaatg ctgatctttt ggtcaatttc 2160tctggattcc acattgaccc taatcagggt gacaggaatg ctgatctttt ggtcaatttc 2160
tttgagaaat ccaaagaaga tccaagttat tgggataaca tttccaaggg aggcctacaa 2220tttgagaaat ccaaagaaga tccaagttat tgggataaca tttccaaggg aggcctacaa 2220
cgcatcattg agaagtatac atggcaaatt tattcacaga aagtgatgac attatctggg 2280cgcatcattg agaagtatac atggcaaatt tattcacaga aagtgatgac attatctggg 2280
atttatggat tctggaagta tgcaaccaca aatgacaaag ttgctagtgc aaagaagcgc 2340atttatggat tctggaagta tgcaaccaca aatgacaaag ttgctagtgc aaagaagcgc 2340
tatctcgaaa tgttttatga acttatgttt aagaaagctg ctgagaaagt tccactggct 2400tatctcgaaa tgttttatga acttatgttt aagaaagctg ctgagaaagt tccactggct 2400
attgatgaat ag 2412attgatgaat ag 2412
<210> 2<210> 2
<211> 723<211> 723
<212> DNA<212>DNA
<213> 发光型水螅水母(luminous hydromedusan Aequorea)<213> Luminous hydromedusan Aequorea
<400> 2<400> 2
atggtgagca agggcgagga gctgttcacc ggggtggtgc ccatcctggt cgagctggac 60atggtgagca agggcgagga gctgttcacc ggggtggtgc ccatcctggt cgagctggac 60
ggcgacgtga acggccacaa gttcagcgtg tccggcgagg gcgagggcga tgccacctac 120ggcgacgtga acggccacaa gttcagcgtg tccggcgagg gcgagggcga tgccacctac 120
ggcaagctga ccctgaagtt catctgcacc accggcaagc tgcccgtgcc ctggcccacc 180ggcaagctga ccctgaagtt catctgcacc accggcaagc tgcccgtgcc ctggcccacc 180
ctcgtgacca ccttcaccta cggcgtgcag tgcttcagcc gctaccccga ccacatgaag 240ctcgtgacca ccttcaccta cggcgtgcag tgcttcagcc gctaccccga ccacatgaag 240
cagcacgact tcttcaagtc cgccatgccc gaaggctacg tccaggagcg caccatcttc 300cagcacgact tcttcaagtc cgccatgccc gaaggctacg tccaggagcg caccatcttc 300
ttcaaggacg acggcaacta caagacccgc gccgaggtga agttcgaggg cgacaccctg 360ttcaaggacg acggcaacta caagacccgc gccgaggtga agttcgaggg cgacaccctg 360
gtgaaccgca tcgagctgaa gggcatcgac ttcaaggagg acggcaacat cctggggcac 420gtgaaccgca tcgagctgaa gggcatcgac ttcaaggagg acggcaacat cctggggcac 420
aagctggagt acaactacaa cagccacaac gtctatatca tggccgacaa gcagaagaac 480aagctggagt acaactacaa cagccacaac gtctatatca tggccgacaa gcagaagaac 480
ggcatcaagg tgaacttcaa gatccgccac aacatcgagg acggcagcgt gcagctcgcc 540ggcatcaagg tgaacttcaa gatccgccac aacatcgagg acggcagcgt gcagctcgcc 540
gaccactacc agcagaacac ccccatcggc gacggccccg tgctgctgcc cgacaaccac 600gaccactacc agcagaacac ccccatcggc gacggccccg tgctgctgcc cgacaaccac 600
tacctgagca cccagtccgc cctgagcaaa gaccccaacg agaagcgcga tcacatggtc 660tacctgagca cccagtccgc cctgagcaaa gaccccaacg agaagcgcga tcacatggtc 660
ctgctggagt tcgtgaccgc cgccgggatc actcacggca tggacgagct gtacagatct 720ctgctggagt tcgtgaccgc cgccgggatc actcacggca tggacgagct gtacagatct 720
taa 723taa 723
<210> 3<210> 3
<211> 3132<211> 3132
<212> DNA<212>DNA
<213> 黑果枸杞(Lycium ruthenicum Murr.)<213> Lycium ruthenicum Murr.
<400> 3<400> 3
atggcagcca gtagtcttag cattaaggac cgtttggagg aatccatttt ggctcgtcca 60atggcagcca gtagtcttag cattaaggac cgtttggagg aatccatttt ggctcgtcca 60
gatgaaattt cggcactcaa gtcaagggtt gaaactgaag ggaaaggggt catgaaacca 120gatgaaattt cggcactcaa gtcaagggtt gaaactgaag ggaaaggggt catgaaacca 120
cttgatctct tgaaccattt gatttctgtg aatactaaga agaatggagt aaatgttggt 180cttgatctct tgaaccattt gatttctgtg aatactaaga agaatggagt aaatgttggt 180
gccagtgcac tcgtggaagt tctcagttgc agccaagaag ctgtgattgt accaccacaa 240gccagtgcac tcgtggaagt tctcagttgc agccaagaag ctgtgattgt accaccacaa 240
cttgcactag ctgtacgtcc aaggcccggt gtgtgggagt atgtgtcact gaatcttaag 300cttgcactag ctgtacgtcc aaggcccggt gtgtgggagt atgtgtcact gaatcttaag 300
acaaagaaag tggctgaatt gagcatcccc aaataccttc aattgaaaga gaacgctgtc 360acaaagaaag tggctgaatt gagcatcccc aaataccttc aattgaaaga gaacgctgtc 360
gatgaaagtg gaaacgtctt ggaaatggat tttgagccat ttactactgt aactcctcca 420gatgaaagtg gaaacgtctt ggaaatggat tttgagccat ttactactgt aactcctcca 420
aagacacttt ctgactccat tggtaatggt ttggagtttc ttaatcgcca tattgcttca 480aagacacttt ctgactccat tggtaatggt ttggagtttc ttaatcgcca tattgcttca 480
acaatgttcc atgacaagga gattgccaag tgcctccttg actttctcag acagcataac 540acaatgttcc atgacaagga gattgccaag tgcctccttg actttctcag acagcataac 540
tacaaaggaa agtcattgat ggtgaaagaa agcatccaaa gcctggaaag tttccaatat 600tacaaaggaa agtcattgat ggtgaaagaa agcatccaaa gcctggaaag tttccaatat 600
gtcctgaaaa aagcagagga atatctgcac tctctgaatc cagaaactcc atactctaac 660gtcctgaaaa aagcagagga atatctgcac tctctgaatc cagaaactcc atactctaac 660
tttgaatcga aatttgaaga gattggcttg gaaagagggt ggggaaacac tgctcaacgc 720tttgaatcga aatttgaaga gattggcttg gaaagagggt ggggaaacac tgctcaacgc 720
gtgcaagaaa caatctgtca tttgttgcac ctccttgagg ctcctaatgc atcttccttg 780gtgcaagaaa caatctgtca tttgttgcac ctccttgagg ctcctaatgc atcttccttg 780
gaaaaattcc ttggaagaat cccattggtt ttcaatgttg tcattctcac ccctcatggt 840gaaaaattcc ttggaagaat cccattggtt ttcaatgttg tcattctcac ccctcatggt 840
tatttcgctc aagaaaacgt ccttggttat cccgacactg gtggccaggt tgtgtacatt 900tatttcgctc aagaaaacgt ccttggttat cccgacactg gtggccaggt tgtgtacatt 900
cttgatcaag ttccagccat ggagcgtgag atgcttctcc gtttgaagct tcaaggactt 960cttgatcaag ttccagccat ggagcgtgag atgcttctcc gtttgaagct tcaaggactt 960
gatgatatcc tcccccggat ccttgttgta acaaggctgc tgcctgatgc agttggaacc 1020gatgatatcc tcccccggat ccttgttgta acaaggctgc tgcctgatgc agttggaacc 1020
acttgtggtg agcgcatgga gaaagtatat ggggcagagc attctcatat tattcgtgtt 1080acttgtggtg agcgcatgga gaaagtatat ggggcagagc attctcatat tattcgtgtt 1080
ccatttagaa ctgagaaagg aatgttgcgc aaatggatct caagattcga agtctggcca 1140ccatttagaa ctgagaaagg aatgttgcgc aaatggatct caagattcga agtctggcca 1140
tacatggaaa ctttcactga ggatgtcgcg gaagaacttg tcaaagagct gcaagctaaa 1200tacatggaaa ctttcactga ggatgtcgcg gaagaacttg tcaaagagct gcaagctaaa 1200
ccagacttga tcattggaaa ctacagtgag ggaaaccttg ctgcctcctt gttggctaag 1260ccagacttga tcattggaaa ctacagtgag ggaaaccttg ctgcctcctt gttggctaag 1260
aaatttgggg ctactcaatg cacaatagct catgccttgg agaaaaccaa gtatccaaac 1320aaatttgggg ctactcaatg cacaatagct catgccttgg agaaaaccaa gtatccaaac 1320
tctgaccttt actggaagaa atttgatgac aagtatcatt tctcaagtca gttcagtgct 1380tctgaccttt actggaagaa atttgatgac aagtatcatt tctcaagtca gttcagtgct 1380
gatctttttg cgatgaatca cactgatttc atcatcacca gcactttcca agaaatcgct 1440gatctttttg cgatgaatca cactgatttc atcatcacca gcactttcca agaaatcgct 1440
ggaagcaaga atactgtagg gcagtatgag agccacactg cttttaccat gcctggattg 1500ggaagcaaga atactgtagg gcagtatgag agccaacactg cttttaccat gcctggattg 1500
taccgagtag tccatggaat tgattcattt gatccaaaat tcaacattgt ctcccctggg 1560taccgagtag tccatggaat tgattcattt gatccaaaat tcaacattgt ctcccctggg 1560
gctgatatgt cgatctactt cccttacaca gaaaaggaaa aaaggctaaa caatttccac 1620gctgatatgt cgatctactt cccttacaca gaaaaggaaa aaaggctaaa caatttccac 1620
ccggaaattg aagaactact ctacagtcct gttgagaaca aagagcacct atgtgtgttg 1680ccggaaattg aagaactact ctacagtcct gttgagaaca aagagcacct atgtgtgttg 1680
aaggaccgga acaagccaat tctcttcacc atggcaaggc tagatcgcgt gaagaatcta 1740aaggaccgga acaagccaat tctcttcacc atggcaaggc tagatcgcgt gaagaatcta 1740
acagggctcg ttgaatggta tgccaagaat gcaaggctga gagagcttgt taaccttgtg 1800acagggctcg ttgaatggta tgccaagaat gcaaggctga gagagcttgt taaccttgtg 1800
gttgttggtg gagacagaag gaaagaatcc aaggatttgg aagagcaagc agagatgaaa 1860gttgttggtg gagacagaag gaaagaatcc aaggatttgg aagagcaagc agagatgaaa 1860
aaaatgtatg accttattga aacctacaac ctgaatggac aattcaggtg gatttcttct 1920aaaatgtatg accttattga aacctacaac ctgaatggac aattcaggtg gatttcttct 1920
cagatgaatc gtataaggaa cggagagctt taccgatata ttgcagacac gaggggtgct 1980cagatgaatc gtataaggaa cggagagctt taccgatata ttgcagacac gaggggtgct 1980
ttcgttcagc cagctttcta cgaggctttc ggtttgacag ttgttgaatc catgacttgt 2040ttcgttcagc cagctttcta cgaggctttc ggtttgacag ttgttgaatc catgacttgt 2040
ggtttgccaa cttttgctac ttgtaatggt ggaccatttg agattatagt gcatggaaaa 2100ggtttgccaa cttttgctac ttgtaatggt ggaccatttg agattatagt gcatggaaaa 2100
tctggattcc acattgaccc taatcagggt gacaggaatg ctgatctttt ggtcaatttc 2160tctggattcc acattgaccc taatcagggt gacaggaatg ctgatctttt ggtcaatttc 2160
tttgagaaat ccaaagaaga tccaagttat tgggataaca tttccaaggg aggcctacaa 2220tttgagaaat ccaaagaaga tccaagttat tgggataaca tttccaaggg aggcctacaa 2220
cgcatcattg agaagtatac atggcaaatt tattcacaga aagtgatgac attatctggg 2280cgcatcattg agaagtatac atggcaaatt tattcacaga aagtgatgac attatctggg 2280
atttatggat tctggaagta tgcaaccaca aatgacaaag ttgctagtgc aaagaagcgc 2340atttatggat tctggaagta tgcaaccaca aatgacaaag ttgctagtgc aaagaagcgc 2340
tatctcgaaa tgttttatga acttatgttt aagaaagctg ctgagaaagt tccactggct 2400tatctcgaaa tgttttatga acttatgttt aagaaagctg ctgagaaagt tccactggct 2400
attgatgaaa tggtgagcaa gggcgaggag ctgttcaccg gggtggtgcc catcctggtc 2460attgatgaaa tggtgagcaa gggcgaggag ctgttcaccg gggtggtgcc catcctggtc 2460
gagctggacg gcgacgtgaa cggccacaag ttcagcgtgt ccggcgaggg cgagggcgat 2520gagctggacg gcgacgtgaa cggccacaag ttcagcgtgt ccggcgaggg cgagggcgat 2520
gccacctacg gcaagctgac cctgaagttc atctgcacca ccggcaagct gcccgtgccc 2580gccacctacg gcaagctgac cctgaagttc atctgcacca ccggcaagct gcccgtgccc 2580
tggcccaccc tcgtgaccac cttcacctac ggcgtgcagt gcttcagccg ctaccccgac 2640tggcccaccc tcgtgaccac cttcacctac ggcgtgcagt gcttcagccg ctaccccgac 2640
cacatgaagc agcacgactt cttcaagtcc gccatgcccg aaggctacgt ccaggagcgc 2700cacatgaagc agcacgactt cttcaagtcc gccatgcccg aaggctacgt ccaggagcgc 2700
accatcttct tcaaggacga cggcaactac aagacccgcg ccgaggtgaa gttcgagggc 2760accatcttct tcaaggacga cggcaactac aagacccgcg ccgaggtgaa gttcgagggc 2760
gacaccctgg tgaaccgcat cgagctgaag ggcatcgact tcaaggagga cggcaacatc 2820gacaccctgg tgaaccgcat cgagctgaag ggcatcgact tcaaggagga cggcaacatc 2820
ctggggcaca agctggagta caactacaac agccacaacg tctatatcat ggccgacaag 2880ctggggcaca agctggagta caactacaac agccacaacg tctatatcat ggccgacaag 2880
cagaagaacg gcatcaaggt gaacttcaag atccgccaca acatcgagga cggcagcgtg 2940cagaagaacg gcatcaaggt gaacttcaag atccgccaca acatcgagga cggcagcgtg 2940
cagctcgccg accactacca gcagaacacc cccatcggcg acggccccgt gctgctgccc 3000cagctcgccg accactacca gcagaacacc cccatcggcg acggccccgt gctgctgccc 3000
gacaaccact acctgagcac ccagtccgcc ctgagcaaag accccaacga gaagcgcgat 3060gacaaccact acctgagcac ccagtccgcc ctgagcaaag accccaacga gaagcgcgat 3060
cacatggtcc tgctggagtt cgtgaccgcc gccgggatca ctcacggcat ggacgagctg 3120cacatggtcc tgctggagtt cgtgaccgcc gccgggatca ctcacggcat ggacgagctg 3120
tacagatctt aa 3132tacagatctt aa 3132
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