Detailed Description
The following examples are intended to illustrate the invention but are not intended to limit the scope of the invention. Unless otherwise specified, the technical means used in the examples are conventional means well known to those skilled in the art, and the raw materials used are commercially available products.
The media used in the following examples are specifically as follows:
NA medium: 3.0 g/L of beef extract powder, 10.0 g/L of peptone, 5.0 g/L of sodium chloride, 18.0 g/L of agar powder, 1000 mL of distilled water and pH 7.2.
NB medium: 3.0 g/L of beef extract powder, 10.0 g/L of peptone, 5.0 g/L of sodium chloride, 1000 mL of distilled water and pH 7.2.
Example 1 isolation, purification and screening of an endophytic antagonistic bacterium TN50 of bergamot pear
(1) Separation of fragrant pear endophytic bacteria: washing collected branches, flowers, leaves and fruits of healthy bergamot pears under tap water for 1-2 h, washing with sterile water, and weighing petals, branches (cut into small sections of 0.5-1 cm) and leaves and fruits (cut into 4 mm)2Tissue blocks) of 1 g, soaking in 75% alcohol for 1 min, soaking in 1% sodium hypochlorite for 2-5 min, and washing with sterile water for 3-5 times. And (3) respectively coating 0.l mL of the last sterile water washing liquid on an NA culture medium, placing the NA culture medium in a thermostat at 28 ℃ for culturing for 2-3 d, observing whether sterile colonies grow out, and detecting whether the surface of the sample is sterilized completely. And (3) putting the sample with the thoroughly-sterilized surface into a sterilized mortar, adding l0 mL of PBS buffer solution into each 1 g of the sample to fully grind the tissue, standing for 10 min, sucking the supernatant by using a pipette gun, adding the supernatant into test tube sterile water, and fully and uniformly mixing to prepare diluents with different dilutions. And (3) sucking 100 muL of sample diluent, injecting the sample diluent onto an NA culture medium flat plate, uniformly coating, and putting the sample diluent into a constant-temperature incubator for 28 ℃ culture for 2-3 d. Selecting single colony according to different forms, colors and sizes of the colony grown on the plate, repeatedly streaking and purifying, transferring to the slant of NA culture medium, and preserving at 4 ℃.
(2) Preparing fermentation liquor of a strain to be detected: inoculating pure culture of the strain to be tested into NB culture solution with bottling amount of 80 mL/250 mL, shaking at 28 deg.C for 24 h to OD600And (d) = 1.0-1.2 fermentation liquor. Diluting the fermentation liquid to obtain viable bacteria with concentration of 109cfu/mL of the bacterial fermentation broth.
(3) Preparing fermentation filtrate of the strain to be detected: collecting 200 mL fermentation liquor, centrifuging at 10000 r/min for 20 min at 4 ℃, collecting supernatant, filtering and sterilizing through a 0.22 mu m microporous filter membrane, and storing at 4 ℃ for later use.
(4) Preliminary screening of pear fire blight bacterium antagonistic strains: taking a pear fire blight bacterium suspension (the concentration is 10)7cfu/mL) 0.1 mL was plated on NA media plates. Dipping a ring of thalli on a single colony activated by the endophytic bacterial strain to be detected by using an inoculating ring, and carrying out point inoculation on 4 points at equal distance on the circumference of 2 cm of the edge of a bacterium coating plate, wherein each bacterial strain is repeated for 3 times. Culturing at 26-28 deg.C for 2-3 days to obtain crossThe size of the relative inhibition zone is measured by a cross method.
(5) Rescreening pear fire blight bacterium antagonistic strains: re-screening adopts a paper filter disc method, 0.1 mL of pear fire blight bacterium suspension is uniformly coated on an NA flat plate, 4 sterilization paper filter discs (diameter is 4 mm) are placed at equal distance positions on the circumference of 2 cm away from the edge of the bacteria coating flat plate, a liquid transfer gun is used for sucking 5 mu L of primary screening antagonistic bacterium suspension to be dripped on the paper filter discs, NB liquid culture medium with equal sterilization is added as a control, and after 2-3 d cultivation is carried out at 28 ℃, the size of a bacteriostatic circle is measured by a cross method. Each strain was replicated in 3 dishes.
(6) And (3) testing the antagonistic action of TN50 fermentation filtrate on pear fire blight bacteria: taking 0.1 mL of pear fire blight bacterium suspension to evenly spread on an NA flat plate, punching 3 round holes in the positions with equal distances on the circumference of 2 cm away from the edge of the bacterium spreading flat plate by using a puncher (with the diameter of 5 mm), sucking 100 mu L TN50 fermentation filtrate by using a liquid transfer gun, dropwise adding the fermentation filtrate into the holes, taking NB liquid culture medium with the same amount of sterilization as a control, and measuring the size of a bacteriostatic ring by using a cross method after culturing for 2-3 d at 28 ℃. Each strain was replicated in 3 dishes. And measuring the diameter of the inhibition zone, and counting the inhibition rate. Bacteriostasis rate (%) = [ (diameter of bacteriostasis zone-5 mm)/(diameter of bacteriostasis zone) ] × 100%.
Adding 100 muL of each of the erwinia amylovora bacterial suspension and TN50 fermentation filtrate into 50 mL/200 mL of bottled NB culture solution, co-culturing at 30 ℃ and 160 r/min for 24 h, measuring the viable count of pathogenic bacteria by using a dilution plate counting method by taking the culture solution only inoculated with the same amount of the erwinia amylovora bacterial suspension as a control, and counting the reduction rate of the viable count. The reduction rate of the viable count of pathogenic bacteria (%) = (viable count of pathogenic bacteria culture solution-viable count of pathogenic bacteria culture solution added with TN50 fermentation filtrate)/viable count of pathogenic bacteria culture solution x 100%.
Test results show that the TN50 strain does not generate a bacteriostatic zone on a plate culture medium, but has high growth speed and strong competitive power, and can quickly cover the erwinia amylovora bacterial colonies within 24 hours (see figure 1). The TN50 strain fermentation filtrate has obvious inhibition effect on the erwinia amylovora (see figure 2 and table 1), the diameter of an inhibition zone reaches 26.27 mm, and the inhibition rate is 80.96%; the TN50 strain fermentation filtrate and the erwinia amylovora are co-cultured, the reduction rate of the viable count of the erwinia amylovora reaches 99.99 percent (see table 2), and the antibacterial effect is strongest in the determined antagonistic strain.
TABLE 1 antagonistic action of partial antagonistic bacterial strain fermentation filtrate on erwinia amylovora
TABLE 2 reduction rate of partial antagonistic bacterial strain fermentation filtrate on viable bacteria of erwinia amylovora
Example 2 identification of TN50 Strain
Strain TN50 was streaked onto NA medium, incubated at 28 ℃ for 24 h, and its colony morphology was observed and described. Meanwhile, gram staining is carried out, and the size, the shape, the existence, the shape, the implantation position and the like of the thalli of the test strains are observed, and the physiological and biochemical processes mainly refer to a common bacteria system identification manual.
(1) Bacterial colony characteristics and thallus morphology characteristics
TN50 has the colony characteristics shown in FIG. 3, and has round shape, luster viscosity, uniform edge, opacity, light yellow color, and rod-like shape shown in FIG. 4, G-No spores, no flagella.
(2) Physiological and biochemical property identification
The determination is carried out by referring to the method in the handbook of identifying common bacteria systems, and the test results are shown in Table 3.
TABLE 3 physiological and biochemical characteristics of TN50
(3) 16S rDNA gene sequence determination and analysis
PCR amplification is carried out by taking total DNA of TN50 strain extracted by a thermal cracking method as a template, and primers are bacterial 16S rRNA universal primers 27F (5'-AGAGTTTGATCCTGGCTCAG-3') and 1429R (5'-CTACGGCTACCTTGTTACGA-3'). The PCR reaction system is 25 muL: 1.0 muL of DNA template, 1.0 muL of 10 mumol/L27F/1429R, 1.5 muL of 10 mmol/L dNTPs, 2.5 muL of 10 XPCR Buffer (2.5 mmol/L MgCl2), 0.5 muL of 2.5U/muL TaqDNA polymerase, and supplementing sterilized ultrapure water to 25 muL. The reaction conditions are as follows: pre-denaturation at 94 ℃ for 5 min; denaturation at 94 ℃ for 45 s, annealing at 58 ℃ for 45 s, extension at 72 ℃ for 1.5 min, and 35 cycles; extension at 72 deg.C for 7 min, and storage at 4 deg.C. After the amplification product is detected by 10 g/L agarose gel electrophoresis, the PCR product is subjected to clone sequencing by Shanghai biological engineering Co., Ltd, and the sequencing result is shown as SEQ ID No. 1.
The obtained sequence results were subjected to BLAST search at the National Center for Biotechnology Information (NCBI) of the United states, a model strain having high similarity was selected as a reference strain, and a 16S rDNA gene phylogenetic tree was constructed using the Neighbor-joining method (Neighbor-joining) in MEGA5.0 software, with a self-developed value (Bootstrap) of 1000. The results show (FIG. 5), TN50 strain and model strainKlebsiella variicolaThe strain YD8 (KY 887765.1) is positioned on the same phylogenetic branch, and the similarity reaches 99.7 percent at most. The TN50 strain is identified as the Klebsiella by integrating morphological characteristics, physiological and biochemical characteristics and the developmental analysis result of the 16S DNA systemKlebsiellasp.). The strains have been deposited in the Budapest treaty International Collection of microorganisms: china general microbiological culture Collection center (CGMCC for short). And (4) storage address: the institute of microbiology, national academy of sciences No. 3, Xilu No. 1, Beijing, Chaoyang, Beijing. The preservation date is 11 months and 18 days in 2020, and the preservation number is CGMCC No. 21204.
Example 3 in vitro inflorescence determination of Klebsiella TN50 Strain on the control Effect of Pear fire blight
Collecting flowering branches at the initial flowering stage of a bergamot pear orchard, and inserting the flowering branches into 0.05% NaCl solution for corrosion prevention and moisture preservation. Spraying TN50 fermentation liquor by using a handheld pressure sprayer to inoculate pear inflorescences, spraying bacterial liquid to each flower by about 80 mu L, inoculating 50 inflorescences, and repeating for 3 times; meanwhile, spraying 4000-fold liquid contrast of agricultural streptomycin (produced by North China pharmaceutical factory and containing 72% of active ingredients) and sterile water as blank contrast, and spraying and inoculating pathogen bacterial liquid after culturing for 24 hours in an artificial climate box with 25 ℃ and 70% air humidity, wherein each flower is about 80 mu L. And (3) placing the inoculated inflorescences in an artificial climate box for culturing at 25 ℃ and 70% air humidity, observing and recording the morbidity after 3 days, 5 days and 7 days, counting the floral rot rate, and calculating the control effect. After the test is finished, the plant materials with diseases are destroyed after being sterilized by dry heat. Flower rot rate (%) = (number of diseased flowers/total flowers) × 100%; the control effect of flower rot (%) = (control flower rot rate-treated flower rot rate)/control flower rot rate × 100%.
The results show (table 4, fig. 6), TN50 fermentation broth was sprayed on the isolated bergamot pear inflorescence, then pathogenic bacteria were inoculated, and then the flower rot rate of each treatment of 3 d, 5 d and 7 d was investigated, and the protective effect was calculated. The contrast of the TN50 fermentation liquor which is not sprayed begins to generate the flower rot symptom in the anther, stigma, honey gland, calyx, ovary, flower stalk and the like of the bergamot pear inflorescence on the 2 nd day after the pathogenic bacteria are inoculated, and the treatment of spraying the TN50 fermentation liquor can delay the time of the flower rot symptom to a certain extent, reduce the flower rot rate and realize the difference among different strains. The 7-balance control effect of TN50 reaches 52.36 percent, and is close to that of agricultural streptomycin (60.67 percent).
TABLE 4 TN50 determination of the in vitro inflorescence control effect on pear fire blight
Example 4 Du pear potting test to determine the control effect of Klebsiella TN50 strain on the fire blight of pear
(1) Protective prevention effect of TN50 on pear fire blight
The test was carried out in a laboratory climatic chamber with potted 2-year old birch seedlings as the inoculation material. Spray TN50 fermentation broth with hand-held pressure sprayer until leaves and branches are completely wet, spray 5 pots (about 25 branches) per strain, repeat 3 times. Meanwhile, 4000 times of liquid for spraying agricultural streptomycin (produced by North China pharmaceutical factory, 72% of effective component) is used as a contrast, and sterile water spraying is used as a blank contrast. And (3) culturing the inoculated birch pear seedlings in an artificial climate box with the temperature of 28.5 ℃, the relative humidity of 75% and the illumination of 12 h. And spraying to inoculate pathogen bacteria liquid after 72 h, and continuously culturing in an artificial climate box. Observing the disease condition every day, recording the number of diseased branches, measuring the length of the branch withers, the proportion of the length of the branch withers to the length of the inoculated branches and the disease grade. And calculating the morbidity and disease index according to the statistical result, and counting the prevention effect. After the test is finished, the plant materials with diseases are destroyed after being sterilized by dry heat.
(2) Therapeutic control effect of TN50 on pear fire blight
Therapeutic test the inoculation sequence of pathogenic bacteria and antagonistic bacteria is opposite to that of protective test, i.e. spraying inoculation pathogenic bacteria liquid for 72 h on the birch seedling, then spraying TN50 fermentation liquid, and other test materials, culture conditions, and prevention effect investigation method are all consistent with the protective test.
Referring to the method of Paprstein et al and improving, the disease classification standard of the in vitro branch inoculated by the pathogenic bacteria of the erwinia amylovora is established: grade 0, the branch has no disease spots; the length of the lesion of the branch accounts for 1% -5% of the length of the inoculated branch in the level I; grade III, the length of the lesion of the branch accounts for 6% -15% of the length of the inoculated branch; grade V, the length of the lesion of the branch accounts for 16% -30% of the length of the inoculated branch; in the VII level, the length of the lesion of the branch accounts for 31% -50% of the length of the inoculated branch; and the length of the disease spots of the branch accounts for more than 51 percent of the length of the inoculated branch at IX level. And dividing pathogenicity of pathogenic bacteria according to disease indexes of the same time after the isolated branches are inoculated.
Incidence (%) = (number of diseased branches/number of total inoculated branches) × 100%; disease index = (number of diseased branches at each stage × disease-level representative value)/(number of inoculated total branches × highest-level value) × 100; the control effect of the paraquat (%) = (control disease index-treatment disease index)/control disease index is multiplied by 100%.
The protective test results (see table 5) show that the pre-spraying of TN50 on the birch pear seedlings can obviously reduce the branch withering rate and the disease index (P is less than 0.05), and the average protective control effect of 7-15 d is 67.22%. Wherein the control effect is the highest at 10 d (71.33%), and the control effect is still stable at 67.03% at 15 d.
The results of the therapeutic tests show that (see table 6), the spraying of TN50 has obvious therapeutic effect on the paraquat of the birch pear seedlings. The control effect of the TN50 strain with the best control effect is maintained to be more than 65% at 7 d and 10 d, and the average treatment control effect of 7-15 d is 63.88%.
TABLE 5 TN50 protective control of pyretic blight of birch pear
TABLE 6 TN50 therapeutic control of pyretic blight of pyrus betulaefolia
Sequence listing
<110> Sinkiang university of agriculture
<120> Klebsiella and application thereof in prevention and control of fruit tree pear fire blight
<160> 1
<170> SIPOSequenceListing 1.0
<210> 1
<211> 1435
<212> DNA
<213> Klebsiella sp (Klebsiella sp.)
<400> 1
ctggggcggc tacacatgca gtcgagcggt agcacagaga gcttgctctc gggtgacgag 60
cggcggacgg gtgagtaatg tctgggaaac tgcctgatgg agggggataa ctactggaaa 120
cggtagctaa taccgcataa cgtcgcaaga ccaaagtggg ggaccttcgg gcctcatgcc 180
atcagatgtg cccagatggg attagctggt aggtggggta acggctcacc taggcgacga 240
tccctagctg gtctgagagg atgaccagcc acactggaac tgagacacgg tccagactcc 300
tacgggaggc agcagtgggg aatattgcac aatgggcgca agcctgatgc agccatgccg 360
cgtgtgtgaa gaaggccttc gggttgtaaa gcactttcag cggggaggaa ggcggtgagg 420
ttaataacct catcgattga cgttacccgc agaagaagca ccggctaact ccgtgccagc 480
agccgcggta atacggaggg tgcaagcgtt aatcggaatt actgggcgta aagcgcacgc 540
aggcggtctg tcaagtcgga tgtgaaatcc ccgggctcaa cctgggaact gcattcgaaa 600
ctggcaggct agagtcttgt agaggggggt agaattccag gtgtagcggt gaaatgcgta 660
gagatctgga ggaataccgg tggcgaaggc ggccccctgg acaaagactg acgctcaggt 720
gcgaaagcgt ggggagcaaa caggattaga taccctggta gtccacgctg taaacgatgt 780
cgatttggag gttgtgccct tgaggcgtgg cttccggagc taacgcgtta aatcgaccgc 840
ctggggagta cggccgcaag gttaaaactc aaatgaattg acgggggccc gcacaagcgg 900
tggagcatgt ggtttaattc gatgcaacgc gaagaacctt acctggtctt gacatccaca 960
gaactttcca gagatggatt ggtgccttcg ggaactgtga gacaggtgct gcatggctgt 1020
cgtcagctcg tgttgtgaaa tgttgggtta agtcccgcaa cgagcgcaac ccttatcctt 1080
tgttgccagc ggttaggccg ggaactcaaa ggagactgcc agtgataaac tggaggaagg 1140
tggggatgac gtcaagtcat catggccctt acgaccaggg ctacacacgt gctacaatgg 1200
catatacaaa gagaagcgac ctcgcgagag caagcggacc tcataaagta tgtcgtagtc 1260
cggattggag tctgcaactc gactccatga agtcggaatc gctagtaatc gtagatcaga 1320
atgctacggt gaatacgttc ccgggccttg tacacaccgc ccgtcacacc atgggagtgg 1380
gttgcaaaag aagtaggtag cttaaccttc gggagggcgc taccacttga taagg 1435