CN112143782A - Method for monitoring stability of barley malting process - Google Patents
Method for monitoring stability of barley malting process Download PDFInfo
- Publication number
- CN112143782A CN112143782A CN202011062493.3A CN202011062493A CN112143782A CN 112143782 A CN112143782 A CN 112143782A CN 202011062493 A CN202011062493 A CN 202011062493A CN 112143782 A CN112143782 A CN 112143782A
- Authority
- CN
- China
- Prior art keywords
- seq
- malt
- barley
- primer
- gene
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Pending
Links
- 238000000034 method Methods 0.000 title claims abstract description 75
- 238000004890 malting Methods 0.000 title claims abstract description 46
- 238000012544 monitoring process Methods 0.000 title claims abstract description 9
- 235000007340 Hordeum vulgare Nutrition 0.000 title abstract description 78
- 240000005979 Hordeum vulgare Species 0.000 title 1
- 108090000623 proteins and genes Proteins 0.000 claims abstract description 54
- 230000014509 gene expression Effects 0.000 claims abstract description 47
- 230000035784 germination Effects 0.000 claims abstract description 18
- 238000010839 reverse transcription Methods 0.000 claims abstract description 17
- 238000003757 reverse transcription PCR Methods 0.000 claims abstract description 17
- 238000005251 capillar electrophoresis Methods 0.000 claims abstract description 16
- 238000005516 engineering process Methods 0.000 claims abstract description 4
- 108091032973 (ribonucleotides)n+m Proteins 0.000 claims description 53
- 230000003321 amplification Effects 0.000 claims description 23
- 238000003199 nucleic acid amplification method Methods 0.000 claims description 23
- GXCLVBGFBYZDAG-UHFFFAOYSA-N N-[2-(1H-indol-3-yl)ethyl]-N-methylprop-2-en-1-amine Chemical compound CN(CCC1=CNC2=C1C=CC=C2)CC=C GXCLVBGFBYZDAG-UHFFFAOYSA-N 0.000 claims description 20
- 238000006243 chemical reaction Methods 0.000 claims description 17
- 238000004519 manufacturing process Methods 0.000 claims description 16
- 210000004027 cell Anatomy 0.000 claims description 15
- 238000000513 principal component analysis Methods 0.000 claims description 15
- 239000002299 complementary DNA Substances 0.000 claims description 12
- 238000001962 electrophoresis Methods 0.000 claims description 11
- 239000007788 liquid Substances 0.000 claims description 11
- IJGRMHOSHXDMSA-UHFFFAOYSA-N Atomic nitrogen Chemical compound N#N IJGRMHOSHXDMSA-UHFFFAOYSA-N 0.000 claims description 10
- 238000005070 sampling Methods 0.000 claims description 9
- 238000011144 upstream manufacturing Methods 0.000 claims description 7
- 238000000137 annealing Methods 0.000 claims description 5
- 238000004925 denaturation Methods 0.000 claims description 5
- 230000036425 denaturation Effects 0.000 claims description 5
- 229910052757 nitrogen Inorganic materials 0.000 claims description 5
- 238000012257 pre-denaturation Methods 0.000 claims description 5
- 238000004445 quantitative analysis Methods 0.000 claims description 5
- 238000002791 soaking Methods 0.000 claims description 5
- 102100033770 Alpha-amylase 1C Human genes 0.000 claims description 4
- 101000779871 Homo sapiens Alpha-amylase 1A Proteins 0.000 claims description 4
- 101000779870 Homo sapiens Alpha-amylase 1B Proteins 0.000 claims description 4
- 101000779869 Homo sapiens Alpha-amylase 1C Proteins 0.000 claims description 4
- 108020004999 messenger RNA Proteins 0.000 claims description 4
- 238000012216 screening Methods 0.000 claims description 4
- 230000002194 synthesizing effect Effects 0.000 claims description 3
- 102000004157 Hydrolases Human genes 0.000 claims description 2
- 108090000604 Hydrolases Proteins 0.000 claims description 2
- 240000008881 Oenanthe javanica Species 0.000 claims description 2
- 241000209140 Triticum Species 0.000 claims description 2
- 235000021307 Triticum Nutrition 0.000 claims description 2
- 210000002421 cell wall Anatomy 0.000 claims description 2
- 238000003801 milling Methods 0.000 claims description 2
- 230000015572 biosynthetic process Effects 0.000 claims 1
- 238000003786 synthesis reaction Methods 0.000 claims 1
- 241000209219 Hordeum Species 0.000 abstract description 77
- 239000000047 product Substances 0.000 description 15
- 238000002123 RNA extraction Methods 0.000 description 12
- 235000013405 beer Nutrition 0.000 description 9
- 238000011156 evaluation Methods 0.000 description 9
- 239000000203 mixture Substances 0.000 description 9
- HEDRZPFGACZZDS-UHFFFAOYSA-N Chloroform Chemical compound ClC(Cl)Cl HEDRZPFGACZZDS-UHFFFAOYSA-N 0.000 description 6
- LFQSCWFLJHTTHZ-UHFFFAOYSA-N Ethanol Chemical compound CCO LFQSCWFLJHTTHZ-UHFFFAOYSA-N 0.000 description 6
- ZHNUHDYFZUAESO-UHFFFAOYSA-N Formamide Chemical compound NC=O ZHNUHDYFZUAESO-UHFFFAOYSA-N 0.000 description 6
- VYPSYNLAJGMNEJ-UHFFFAOYSA-N Silicium dioxide Chemical compound O=[Si]=O VYPSYNLAJGMNEJ-UHFFFAOYSA-N 0.000 description 6
- 239000000741 silica gel Substances 0.000 description 6
- 229910002027 silica gel Inorganic materials 0.000 description 6
- 239000006228 supernatant Substances 0.000 description 6
- 239000002699 waste material Substances 0.000 description 6
- 238000004458 analytical method Methods 0.000 description 4
- 102000016928 DNA-directed DNA polymerase Human genes 0.000 description 3
- 108010014303 DNA-directed DNA polymerase Proteins 0.000 description 3
- 239000005662 Paraffin oil Substances 0.000 description 3
- 238000010804 cDNA synthesis Methods 0.000 description 3
- 238000005119 centrifugation Methods 0.000 description 3
- 239000003153 chemical reaction reagent Substances 0.000 description 3
- 230000009089 cytolysis Effects 0.000 description 3
- 230000000694 effects Effects 0.000 description 3
- 238000002360 preparation method Methods 0.000 description 3
- 238000000926 separation method Methods 0.000 description 3
- 238000012546 transfer Methods 0.000 description 3
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Substances O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 3
- 240000004808 Saccharomyces cerevisiae Species 0.000 description 2
- 150000001413 amino acids Chemical class 0.000 description 2
- 150000004676 glycans Chemical class 0.000 description 2
- 235000015097 nutrients Nutrition 0.000 description 2
- 229920001282 polysaccharide Polymers 0.000 description 2
- 239000005017 polysaccharide Substances 0.000 description 2
- 239000004382 Amylase Substances 0.000 description 1
- 102000013142 Amylases Human genes 0.000 description 1
- 108010065511 Amylases Proteins 0.000 description 1
- 235000008694 Humulus lupulus Nutrition 0.000 description 1
- 108091005804 Peptidases Proteins 0.000 description 1
- 239000004365 Protease Substances 0.000 description 1
- 102100037486 Reverse transcriptase/ribonuclease H Human genes 0.000 description 1
- 229920002472 Starch Polymers 0.000 description 1
- 230000005856 abnormality Effects 0.000 description 1
- 235000019418 amylase Nutrition 0.000 description 1
- 238000013124 brewing process Methods 0.000 description 1
- 238000004090 dissolution Methods 0.000 description 1
- 238000000855 fermentation Methods 0.000 description 1
- 230000004151 fermentation Effects 0.000 description 1
- 239000000796 flavoring agent Substances 0.000 description 1
- 235000019634 flavors Nutrition 0.000 description 1
- 238000011835 investigation Methods 0.000 description 1
- 229920002521 macromolecule Polymers 0.000 description 1
- 230000008092 positive effect Effects 0.000 description 1
- 230000007065 protein hydrolysis Effects 0.000 description 1
- 102000004169 proteins and genes Human genes 0.000 description 1
- 230000017854 proteolysis Effects 0.000 description 1
- 238000003908 quality control method Methods 0.000 description 1
- 238000005063 solubilization Methods 0.000 description 1
- 230000007928 solubilization Effects 0.000 description 1
- 235000019698 starch Nutrition 0.000 description 1
- 239000008107 starch Substances 0.000 description 1
- 239000000126 substance Substances 0.000 description 1
Images
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/6851—Quantitative amplification
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Engineering & Computer Science (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Health & Medical Sciences (AREA)
- Biophysics (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Immunology (AREA)
- Microbiology (AREA)
- Molecular Biology (AREA)
- Analytical Chemistry (AREA)
- Physics & Mathematics (AREA)
- Biotechnology (AREA)
- Biochemistry (AREA)
- Bioinformatics & Cheminformatics (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Genetics & Genomics (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Abstract
The invention provides a method for monitoring the stability of a barley malting process, which belongs to the technical field of malting and adopts the technology of RT-PCR reverse transcription and capillary electrophoresis to monitor the expression quantity of related genes in the barley malting process so as to monitor the stability of barley in the malting process. The method provided by the invention can accurately evaluate the barley germination condition in the malting stage, and has guiding significance for controlling the barley quality from the source.
Description
Technical Field
The invention belongs to the technical field of malting, and particularly relates to a method for monitoring stability of a barley malting process.
Background
The various components of beer are derived from malt, hops and yeast. The quality of malt directly affects the quality of beer. The malt provides nutrient substances such as sugar, amino acid and the like for yeast fermentation, and simultaneously, the mellow and smooth mouthfeel of the beer is increased. The malt plays a significant role in the production, quality, cost and flavor stability of beer. The selection of high-quality malt becomes the key for producing high-quality beer for beer production enterprises.
The malting process is a process for preparing barley from raw barley, is the beginning of beer production, and has a decisive influence on the beer brewing process, the type of finished products and the quality of the finished products. During the malting process, the biological macromolecules such as protein, polysaccharide and the like of barley seeds are gradually dissolved, and nutrients such as sugar, amino acid and the like are provided for barley germination. The quality of the barley is essentially caused by the dissolution difference in the barley germination process, so that the quality control of the barley from the source has important significance.
Disclosure of Invention
The invention provides a method for monitoring the stability of a barley malting process, which can accurately evaluate the barley germination condition in a malting stage and has guiding significance for controlling the quality of barley from the source.
In order to achieve the above objects, the present invention provides a method for monitoring the stability of barley malting process, which employs RT-PCR reverse transcription and capillary electrophoresis technology in combination to monitor the stability of malt in malting process by monitoring the expression level of genes related to malt germination process.
Preferably, the method comprises the following steps:
screening related genes related to the malt hydrolase, and designing a multiplex primer according to the sequence of the related genes obtained by screening;
extracting to obtain total RNA of the malt cells;
taking total RNA of the malt cells as a template, and carrying out mRNA reverse transcription amplification on the total RNA by using a designed multiple primer to obtain an amplification product;
and quantitatively analyzing the expression quantity of the amplified product by utilizing capillary electrophoresis, and comparing the expression quantity with a gene expression map of a standard process to judge whether the malt is stable in the malting process.
Preferably, the related gene is selected from the group consisting of related genes LD, AMY1, AMY4, GLU, ASP, CYS, SERI, SERIII, MET, TRX, PDI, SEP, WRKY and internal control gene ACT. It is understood that the above genes are selected because they are involved in barley starch, proteolysis-related functions, and are closely related to barley solubilization during malting, thereby characterizing the germination state of barley during malting.
Preferably, the upstream primers of the multiplex primer designed according to the related gene are SEQ ID NO.1, SEQ ID NO.2, SEQ ID NO.3, SEQ ID NO.4, SEQ ID NO.5, SEQ ID NO.6, SEQ ID NO.7, SEQ ID NO.8, SEQ ID NO.9, SEQ ID NO.10, SEQ ID NO.11, SEQ ID NO.12, SEQ ID NO.13 and SEQ ID NO.14 in sequence;
the downstream primers of the designed multiple primers are sequentially SEQ ID NO.15, SEQ ID NO.16, SEQ ID NO.17, SEQ ID NO.18, SEQ ID NO.19, SEQ ID NO.20, SEQ ID NO.21, SEQ ID NO.22, SEQ ID NO.23, SEQ ID NO.24, SEQ ID NO.25, SEQ ID NO.26, SEQ ID NO.27 and SEQ ID NO. 28.
Preferably, the cell walls of the malt sample are disrupted by liquid nitrogen milling to extract malt total RNA.
Preferably, the reverse transcription and amplification of mRNA using the designed multiplex primer specifically comprises:
synthesizing a first cDNA chain by taking purified total RNA of the malt cells as a template and taking a downstream primer of a multiple primer designed according to related genes as a specific primer, wherein the reaction system is 10 mu L;
the first strand of the cDNA synthesized as described above was used as a template, and the upstream primer of the multiplex primer designed based on 13 related genes was used as a specific primer to perform RT-PCR amplification reaction.
Preferably, the reaction parameters for synthesizing the first strand of cDNA are specifically: 48 ℃ for 1 minute; 60 minutes at 42 ℃; 95 ℃ for 5 minutes.
Preferably, the parameters of the RT-PCR amplification reaction are specifically as follows: pre-denaturation at 95 ℃ for 10 minutes; denaturation at 94 ℃ for 30 seconds; the annealing temperature is 56 ℃ for 30 seconds; extension at 71 ℃ for 1min, and 35 cycles.
Preferably, the quantitative analysis of the expression level of the amplification product by capillary electrophoresis specifically comprises:
obtaining electrophoresis peak of each gene by capillary electrophoresis, wherein the expression quantity of each gene is gene peak height H/internal control gene ACT peak height Hact。
Preferably, the step of judging whether the barley is stable in the production process by comparing the gene expression profile with that of a standard process is as follows:
sampling the malt in the 5 stages of the production process of the end of wheat soaking, the first day of germination, the second day of germination, the third day of germination and the fourth day of germination, and obtaining the gene expression quantity of 13 related genes in the 5 stages in total under the standard process, wherein 65 data points are counted;
sampling is carried out under a new production process by adopting the same sampling mode, and the gene expression quantity of 13 genes in 5 stages is obtained, wherein 65 data points are calculated;
performing dimensionality reduction on the two groups of data by using a Principal Component Analysis (PCA) method to obtain principal component scores of the two groups of data;
if the difference value of the principal component scores of the two groups of data is less than or equal to 0.5, the gene expression of the new production process is not greatly different from the standard process;
if the difference in the principal component scores of the two sets of data is >0.5, the gene expression of the new production process is considered to be significantly different from the standard process.
Compared with the prior art, the invention has the advantages and positive effects that:
according to the invention, related genes related to hydrolysis of proteins and polysaccharides in the barley germination process are selected, multiple primers are designed based on the related genes, the reverse transcription amplification RT-PCR technology is used in combination to detect the amplification of the related genes and the expression quantity of the related genes by capillary electrophoresis, so that the difference among different samples can be effectively judged, and whether the whole barley making process is stable or not is judged by comparing with a standard process map. Based on the above, by analyzing the weight of each gene expression in the principal component, it is also possible to confirm which production stage has a difference in gene expression, and further, to analyze in a targeted manner whether there is an abnormality in the production stage. Therefore, the method provided by the invention can accurately evaluate the barley germination condition in the malting stage, and has guiding significance for controlling the barley quality from the source.
Drawings
FIG. 1 is a gene expression profile of a standard process malting process provided in an embodiment of the present invention;
FIG. 2 is a heat map of gene expression during barley A malting according to an embodiment of the present invention;
FIG. 3 is a heat map of gene expression during barley malting B provided by an embodiment of the present invention;
FIG. 4 is a heat map of gene expression during barley C malting according to an embodiment of the present invention.
Detailed Description
The technical solutions in the embodiments of the present invention will be clearly and completely described below, and it is obvious that the described embodiments are only a part of the embodiments of the present invention, and not all embodiments. All other embodiments, which can be derived by a person skilled in the art from the embodiments given herein without making any creative effort, shall fall within the protection scope of the present invention.
Example 1: evaluation of stability of newly purchased batch A barley malting Process
For a batch of barley a newly purchased in a factory, evaluation of malting stability was performed.
1) Green barley sampling:
during the process of preparing the green barley, the green barley which is germinated for 1 day, 2 days, 3 days and 3 days after the barley soaking is finished is taken. In order to ensure that the vital activity of green barley is not changed, the sample should be immediately subjected to RNA extraction or stored at-80 ℃.
2) Crushing green barley:
in order to ensure that RNA in green barley is not degraded, green barley was ground using liquid nitrogen.
3) RNA extraction:
the crushed green barley was subjected to RNA extraction by adding TRIZOL. TRIZOL is a total RNA extraction reagent, and can directly extract total RNA from cells or tissues.
50-100mg of sample was taken and 1ml of Trizol was added. After lysis by shaking, centrifugation was carried out at 12000g at 4 ℃ for 5min, and the supernatant was transferred to a Phasemarker tube and allowed to stand for 5 min. 0.2ml of chloroform was added, shaken manually for 15s, and left to stand for 10 min. Centrifuge at 12000g for 10min at 4 ℃. The supernatant (450. mu.l and 550. mu.l) was taken into an EP tube, 250. mu.l of 96% ethanol was added, and the mixture was mixed by a gun tip. The mixture was transferred to a silica gel tube, centrifuged at 12000g for 1min, and the effluent was removed. Add 700. mu.l WB1, 12000g and centrifuge for 1min to remove the waste liquid. Add 500. mu.l WB2, 12000g and centrifuge for 1min to remove the waste liquid. Add 500. mu.l WB2, centrifuge at 12000g for 1min and transfer the silica gel tube to a 1.5ml EP tube. Adding 50 μ l of nucleic-free water, standing for 1min, and centrifuging at 12000g for 1 min. The centrifuged RNA solution was collected and stored at-80 ℃.
4) RT-PCR reverse transcription:
using the purified barley cell RNA as a template, a genome Lab of Beckmann Coulter was usedTMThe GeXP start kit utilizes the downstream primer of the designed multiple primers as a specific primer, synthesizes a first cDNA chain by taking the total RNA of barley cells as a template, and has a reaction system of 10 mu L. The first strand cDNA synthesis reaction parameters were set as follows: 48 ℃ for 1 minute; 60 minutes at 42 ℃; 95 ℃ for 5 minutes.
Then, DNA polymerase and genome Lab from Beckmann Coulter were usedTMGeXP start kit. RT-PCR amplification reaction is carried out by using the first strand of the synthesized cDNA as a template and the upstream primer of the 13 multiplex primers as a specific primer. The RT-PCR amplification parameters were set as follows: pre-denaturation at 95 ℃ for 10 min; denaturation at 94 ℃ for 30 seconds; the annealing temperature is 56 ℃ and 30 seconds; extending at 71 ℃ for 1 minute, circulating for 35 times, and finally obtaining a reverse transcription amplification product of the expression gene.
5) Analysis of gene expression level:
and (3) carrying out quantitative analysis on the reverse transcription product by utilizing capillary electrophoresis. Mu.l of the PCR multiplex product was added to the wells of the upper plate containing 39. mu.l of a mixture of 95% deionized formamide (SLS) and 400bpMarker, mixed well with a pipette and covered with a drop of paraffin oil. Additionally 250. mu.l of separation buffer was added to each well of the buffer plate. After all the preparations are finished, the capillary electrophoresis is carried out on a machine.
After electrophoresis is finished, the expression quantity of different genes at different stages is obtained by the ratio of the electrophoresis peak height of the related gene to the electrophoresis peak height of the reference gene ACT, and the figure 1 and the figure 2 are expression quantity heat maps of different stages of specific genes respectively.
6) Evaluation of malting stability
PCA (principal component analysis) is carried out on the gene expression data of the two samples to obtain the PCA of the principal component score of the standard malting processStandard of merit2.5, main component score PCA of barley A malting processBarley AThe difference between the two was less than 0.5 when it was 2.9, so barley a was considered to be similar to the standard process with little difference.
Example 2: evaluation of stability of newly purchased batch B barley malting Process
For a batch of barley B newly purchased in a factory, evaluation of malting stability was performed.
1) Green barley sampling:
during the process of preparing the green barley, the green barley which is germinated for 1 day, 2 days, 3 days and 3 days after the barley soaking is finished is taken. In order to ensure that the vital activity of green barley is not changed, the sample should be immediately subjected to RNA extraction or stored at-80 ℃.
2) Crushing green barley:
in order to ensure that RNA in green barley is not degraded, green barley was ground using liquid nitrogen.
3) RNA extraction:
the crushed green barley was subjected to RNA extraction by adding TRIZOL. TRIZOL is a total RNA extraction reagent, and can directly extract total RNA from cells or tissues.
50-100mg of sample was taken and 1ml of Trizol was added. After lysis by shaking, centrifugation was carried out at 12000g at 4 ℃ for 5min, and the supernatant was transferred to a Phasemarker tube and allowed to stand for 5 min. 0.2ml of chloroform was added, shaken manually for 15s, and left to stand for 10 min. Centrifuge at 12000g for 10min at 4 ℃. The supernatant (450. mu.l and 550. mu.l) was taken into an EP tube, 250. mu.l of 96% ethanol was added, and the mixture was mixed by a gun tip. The mixture was transferred to a silica gel tube, centrifuged at 12000g for 1min, and the effluent was removed. Add 700. mu.l WB1, 12000g and centrifuge for 1min to remove the waste liquid. Add 500. mu.l WB2, 12000g and centrifuge for 1min to remove the waste liquid. Add 500. mu.l WB2, centrifuge at 12000g for 1min and transfer the silica gel tube to a 1.5ml EP tube. Adding 50 μ l of nucleic-free water, standing for 1min, and centrifuging at 12000g for 1 min. The centrifuged RNA solution was collected and stored at-80 ℃.
4) RT-PCR reverse transcription:
using the purified barley cell RNA as a template, a genome Lab of Beckmann Coulter was usedTMThe GeXP start kit utilizes the downstream primer of the designed multiple primers as a specific primer, synthesizes a first cDNA chain by taking the total RNA of barley cells as a template, and has a reaction system of 10 mu L. The first strand cDNA synthesis reaction parameters were set as follows: 48 ℃ for 1 minute; 60 minutes at 42 ℃; 95 ℃ for 5 minutes.
Then, DNA polymerase and genome Lab from Beckmann Coulter were usedTMGeXP start kit. RT-PCR amplification reaction is carried out by using the first strand of the synthesized cDNA as a template and the upstream primer of the 13 multiplex primers as a specific primer. The RT-PCR amplification parameters were set as follows: pre-denaturation at 95 ℃ for 10 min; denaturation at 94 ℃ for 30 seconds; the annealing temperature is 56 ℃ and 30 seconds; extending at 71 ℃ for 1 minute, circulating for 35 times, and finally obtaining a reverse transcription amplification product of the expression gene.
5) Analysis of gene expression level:
and (3) carrying out quantitative analysis on the reverse transcription product by utilizing capillary electrophoresis. Mu.l of the PCR multiplex product was added to the wells of the upper plate containing 39. mu.l of a mixture of 95% deionized formamide (SLS) and 400bpMarker, mixed well with a pipette and covered with a drop of paraffin oil. Additionally 250. mu.l of separation buffer was added to each well of the buffer plate. After all the preparations are finished, the capillary electrophoresis is carried out on a machine.
And after the electrophoresis is finished, obtaining the expression quantity of the unused genes at different stages by the ratio of the electrophoresis peak height of the related genes to the electrophoresis peak height of the reference gene ACT. FIGS. 1 and 3 are heat maps of expression levels of specific genes at different stages, respectively.
6) Evaluation of malting stability
By aligning two samplesPerforming Principal Component Analysis (PCA) on the gene expression data of the product to obtain PCA of the principal component score of the standard malting processStandard of merit1.9, barley A Process principal Components score PCABarley BThe difference between the two is more than 0.5 when the barley B is 1.2, so that the barley B malting process is considered to have larger difference from the standard process, the amylase and protease related gene expression quantity difference between the first and second days of germination is larger through weight analysis, and the investigation reason is caused by certain fluctuation of the malting process at the initial stage of germination.
Example 3: evaluation of stability of newly purchased batch C barley malting Process
For a batch of C barley newly purchased in a factory, evaluation of malting stability was performed at the micro-malting stage.
1) Green barley sampling:
during the process of preparing the green barley, the green barley which is germinated for 1 day, 2 days, 3 days and 3 days after the barley soaking is finished is taken. In order to ensure that the vital activity of green barley is not changed, the sample should be immediately subjected to RNA extraction or stored at-80 ℃.
2) Crushing green barley:
in order to ensure that RNA in green barley is not degraded, green barley was ground using liquid nitrogen.
3) RNA extraction:
the crushed green barley was subjected to RNA extraction by adding TRIZOL. TRIZOL is a total RNA extraction reagent, and can directly extract total RNA from cells or tissues.
50-100mg of sample was taken and 1ml of Trizol was added. After lysis by shaking, centrifugation was carried out at 12000g at 4 ℃ for 5min, and the supernatant was transferred to a Phasemarker tube and allowed to stand for 5 min. 0.2ml of chloroform was added, shaken manually for 15s, and left to stand for 10 min. Centrifuge at 12000g for 10min at 4 ℃. The supernatant (450. mu.l and 550. mu.l) was taken into an EP tube, 250. mu.l of 96% ethanol was added, and the mixture was mixed by a gun tip. The mixture was transferred to a silica gel tube, centrifuged at 12000g for 1min, and the effluent was removed. Add 700. mu.l WB1, 12000g and centrifuge for 1min to remove the waste liquid. Add 500. mu.l WB2, 12000g and centrifuge for 1min to remove the waste liquid. Add 500. mu.l WB2, centrifuge at 12000g for 1min and transfer the silica gel tube to a 1.5ml EP tube. Adding 50 μ l of nucleic-free water, standing for 1min, and centrifuging at 12000g for 1 min. The centrifuged RNA solution was collected and stored at-80 ℃.
4) RT-PCR reverse transcription:
using the purified barley cell RNA as a template, a genome Lab of Beckmann Coulter was usedTMThe GeXP start kit utilizes the downstream primer of the designed multiple primers as a specific primer, synthesizes a first cDNA chain by taking the total RNA of barley cells as a template, and has a reaction system of 10 mu L. The first strand cDNA synthesis reaction parameters were set as follows: 48 ℃ for 1 minute; 60 minutes at 42 ℃; 95 ℃ for 5 minutes.
Then, DNA polymerase and genome Lab from Beckmann Coulter were usedTMGeXP start kit. RT-PCR amplification reaction is carried out by using the first strand of the synthesized cDNA as a template and the upstream primer of the 13 multiplex primers as a specific primer. The RT-PCR amplification parameters were set as follows: pre-denaturation at 95 ℃ for 10 min; denaturation at 94 ℃ for 30 seconds; the annealing temperature is 56 ℃ and 30 seconds; extending at 71 ℃ for 1 minute, circulating for 35 times, and finally obtaining a reverse transcription amplification product of the expression gene.
5) Analysis of gene expression level:
and (3) carrying out quantitative analysis on the reverse transcription product by utilizing capillary electrophoresis. Mu.l of the PCR multiplex product was added to the wells of the upper plate containing 39. mu.l of a mixture of 95% deionized formamide (SLS) and 400bpMarker, mixed well with a pipette and covered with a drop of paraffin oil. Additionally 250. mu.l of separation buffer was added to each well of the buffer plate. After all the preparations are finished, the capillary electrophoresis is carried out on a machine.
And after the electrophoresis is finished, obtaining the expression quantity of the unused genes at different stages by the ratio of the electrophoresis peak height of the related genes to the electrophoresis peak height of the reference gene ACT. FIGS. 1 and 4 are heat maps of expression levels of specific genes at different stages, respectively.
6) Evaluation of malting stability
PCA (principal component analysis) is carried out on the gene expression data of the two samples to obtain the PCA of the principal component score of the standard malting processStandard of merit3.2, principal Components score PCA of barley C malting ProcessBarley CThe difference between the two is more than 0.5 when the value is 4.3, so that the barley C malting process is considered to have larger difference from the standard process. Due to the micro-wheat process controlTo be precise, it is therefore considered that varieties of barley C and standard malt differ greatly, resulting in large differences in gene expression.
Sequence listing
<110> Qingdao beer Ltd
<120> method for monitoring stability of barley malting process
<160> 28
<170> PatentIn version 3.5
<210> 1
<211> 38
<212> RNA
<213> Forward primer LD
<400> 1
AGGTGACACTATAGAATATGCTCTTCAAAGCCTTACAA 38
<210> 2
<211> 38
<212> RNA
<213> Forward primer AMY1
<400> 2
AGGTGACACTATAGAATAAAGCAGAGCGGCGGGTGGTA 38
<210> 3
<211> 38
<212> RNA
<213> Forward primer AMY4
<400> 3
AGGTGACACTATAGAATATACATCTTGTTCTGGTGGGA 38
<210> 4
<211> 38
<212> RNA
<213> forward primer GLU
<400> 4
AGGTGACACTATAGAATAACTATGCCGAGTTCTGCTTC 38
<210> 5
<211> 38
<212> RNA
<213> Forward primer ASP
<400> 5
AGGTGACACTATAGAATAGCTACCTCCACTCACGCTAC 38
<210> 6
<211> 38
<212> RNA
<213> Forward primer CYS
<400> 6
AGGTGACACTATAGAATAGTTGCGATGCTAACAAGAAA 38
<210> 7
<211> 37
<212> RNA
<213> Forward primer SER I
<400> 7
<210> 8
<211> 36
<212> RNA
<213> Forward primer SER III
<400> 8
AGGTGACACTATAGAATAATGTCGCTCGTCTGGAAC 36
<210> 9
<211> 37
<212> RNA
<213> Forward primer MET
<400> 9
<210> 10
<211> 38
<212> RNA
<213> Forward primer TRX
<400> 10
AGGTGACACTATAGAATAAACTTCAGTGCTTCGTGGTG 38
<210> 11
<211> 37
<212> RNA
<213> Forward primer PDI
<400> 11
<210> 12
<211> 36
<212> RNA
<213> Forward primer SEP
<400> 12
AGGTGACACTATAGAATAAATCTGAGGTCCAGTCCG 36
<210> 13
<211> 37
<212> RNA
<213> Forward primer WRKY
<400> 13
<210> 14
<211> 36
<212> RNA
<213> internal control Gene ACT
<400> 14
AGGTGACACTATAGAATAATGGTCAAGGCTGGTTTC 36
<210> 15
<211> 37
<212> RNA
<213> reverse primer LD
<400> 15
<210> 16
<211> 38
<212> RNA
<213> reverse primer AMY1
<400> 16
GTACGACTCACTATAGGGATTCGTTGGAGACGGAGTGC 38
<210> 17
<211> 41
<212> RNA
<213> reverse primer AMY4
<400> 17
GTACGACTCACTATAGGGATCTGCCTATGTTTATCCTGATT 41
<210> 18
<211> 39
<212> RNA
<213> reverse primer GLU
<400> 18
GTACGACTCACTATAGGGATGGAAGTCCCTCGCCCTCTG 39
<210> 19
<211> 40
<212> RNA
<213> reverse primer ASP
<400> 19
<210> 20
<211> 38
<212> RNA
<213> reverse primer CYS
<400> 20
GTACGACTCACTATAGGGACCGTGAAGATACCCGATTT 38
<210> 21
<211> 38
<212> RNA
<213> reverse primer SER I
<400> 21
GTACGACTCACTATAGGGATCCTTGTATCCCTTTGACG 38
<210> 22
<211> 41
<212> RNA
<213> reverse primer SER III
<400> 22
GTACGACTCACTATAGGGACTGTATAGGCTTTGTATTGGAT 41
<210> 23
<211> 37
<212> RNA
<213> reverse primer MET
<400> 23
<210> 24
<211> 37
<212> RNA
<213> reverse primer TRX
<400> 24
<210> 25
<211> 37
<212> RNA
<213> reverse primer PDI
<400> 25
<210> 26
<211> 39
<212> RNA
<213> reverse primer SEP
<400> 26
GTACGACTCACTATAGGGACATTAAGAAGGTGGAAATCG 39
<210> 27
<211> 37
<212> RNA
<213> reverse primer WRKY
<400> 27
<210> 28
<211> 37
<212> RNA
<213> internal control Gene ACT
<400> 28
Claims (10)
1. A method for monitoring the stability of malt malting process is characterized in that RT-PCR reverse transcription and capillary electrophoresis technology are used together to monitor the expression quantity of relative genes in malt malting process so as to monitor the stability of malt in malting process.
2. The method of claim 1, comprising the steps of:
screening related genes related to the malt hydrolase, and designing a multiplex primer according to the sequence of the related genes obtained by screening;
extracting to obtain total RNA of the malt cells;
taking total RNA of the malt cells as a template, and carrying out mRNA reverse transcription amplification on the total RNA by using a designed multiple primer to obtain an amplification product;
and quantitatively analyzing the expression quantity of the amplified product by utilizing capillary electrophoresis, and comparing the expression quantity with a gene expression map of a standard process to judge whether the malt is stable in the malting process.
3. The method of claim 2, wherein the related gene is selected from the group consisting of related genes LD, AMY1, AMY4, GLU, ASP, CYS, SERI, SERIII, MET, TRX, PDI, SEP, WRKY, and Intro-Control gene ACT.
4. The method of claim 3, wherein the upstream primers of the multiplex primers designed based on the above-mentioned related genes are SEQ ID NO.1, SEQ ID NO.2, SEQ ID NO.3, SEQ ID NO.4, SEQ ID NO.5, SEQ ID NO.6, SEQ ID NO.7, SEQ ID NO.8, SEQ ID NO.9, SEQ ID NO.10, SEQ ID NO.11, SEQ ID NO.12, SEQ ID NO.13, SEQ ID NO.14, in that order;
the downstream primers of the designed multiple primers are sequentially SEQ ID NO.15, SEQ ID NO.16, SEQ ID NO.17, SEQ ID NO.18, SEQ ID NO.19, SEQ ID NO.20, SEQ ID NO.21, SEQ ID NO.22, SEQ ID NO.23, SEQ ID NO.24, SEQ ID NO.25, SEQ ID NO.26, SEQ ID NO.27 and SEQ ID NO. 28.
5. The method according to claim 2, wherein the cell walls of the malt sample are disrupted by liquid nitrogen milling to extract total RNA from malt.
6. The method of claim 4, wherein the reverse transcription amplification of mRNA using the designed multiplex primers specifically comprises:
synthesizing a first cDNA chain by taking purified total RNA of the malt cells as a template and taking a downstream primer of a multiple primer designed according to related genes as a specific primer, wherein the reaction system is 10 mu L;
the first strand of the cDNA synthesized as described above was used as a template, and the upstream primer of the multiplex primer designed based on 13 related genes was used as a specific primer to perform RT-PCR amplification reaction.
7. The method of claim 6, wherein the reaction parameters for the first strand synthesis of cDNA are: 48 ℃ for 1 minute; 60 minutes at 42 ℃; 95 ℃ for 5 minutes.
8. The method according to claim 6, wherein the parameters of the RT-PCR amplification reaction are specifically: pre-denaturation at 95 ℃ for 10 minutes; denaturation at 94 ℃ for 30 seconds; the annealing temperature is 56 ℃ for 30 seconds; extension at 71 ℃ for 1min, and 35 cycles.
9. The method according to claim 2, wherein the quantitative analysis of the expression level of the amplification product by capillary electrophoresis comprises:
obtaining electrophoresis peak of each gene by capillary electrophoresis, wherein the expression quantity of each gene is gene peak height H/internal control gene ACT peak height Hact。
10. The method according to claim 2, wherein the determination of the stability of malt during the production process by comparison with the gene expression profile of the standard process is specifically:
sampling the malt in the 5 stages of the production process of the end of wheat soaking, the first day of germination, the second day of germination, the third day of germination and the fourth day of germination, and obtaining the gene expression quantity of 13 related genes in the 5 stages in total under the standard process, wherein 65 data points are counted;
sampling is carried out under a new production process by adopting the same sampling mode, and the gene expression quantity of 13 genes in 5 stages is obtained, wherein 65 data points are calculated;
performing dimensionality reduction on the two groups of data by using a Principal Component Analysis (PCA) method to obtain principal component scores of the two groups of data;
if the difference value of the principal component scores of the two groups of data is less than or equal to 0.5, the gene expression of the new production process is not greatly different from the standard process;
if the difference in the principal component scores of the two sets of data is >0.5, the gene expression of the new production process is considered to be significantly different from the standard process.
Priority Applications (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN202011062493.3A CN112143782A (en) | 2020-09-30 | 2020-09-30 | Method for monitoring stability of barley malting process |
Applications Claiming Priority (1)
Application Number | Priority Date | Filing Date | Title |
---|---|---|---|
CN202011062493.3A CN112143782A (en) | 2020-09-30 | 2020-09-30 | Method for monitoring stability of barley malting process |
Publications (1)
Publication Number | Publication Date |
---|---|
CN112143782A true CN112143782A (en) | 2020-12-29 |
Family
ID=73951623
Family Applications (1)
Application Number | Title | Priority Date | Filing Date |
---|---|---|---|
CN202011062493.3A Pending CN112143782A (en) | 2020-09-30 | 2020-09-30 | Method for monitoring stability of barley malting process |
Country Status (1)
Country | Link |
---|---|
CN (1) | CN112143782A (en) |
Cited By (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2024037669A1 (en) * | 2022-11-24 | 2024-02-22 | 青岛啤酒股份有限公司 | Method for regulating and controlling malt pyf on basis of gene expression in malting process and use thereof |
Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2009020459A2 (en) * | 2006-08-04 | 2009-02-12 | Verenium Corporation | Glucanases, nucleic acids encoding them and methods for making and using them |
CN108342458A (en) * | 2018-04-13 | 2018-07-31 | 青岛啤酒股份有限公司 | Malt leaching rate evaluation method based on gene expression monitoring |
CN108531565A (en) * | 2018-04-13 | 2018-09-14 | 青岛啤酒股份有限公司 | Malt solubility evaluation method based on gene expression monitoring |
-
2020
- 2020-09-30 CN CN202011062493.3A patent/CN112143782A/en active Pending
Patent Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2009020459A2 (en) * | 2006-08-04 | 2009-02-12 | Verenium Corporation | Glucanases, nucleic acids encoding them and methods for making and using them |
CN108342458A (en) * | 2018-04-13 | 2018-07-31 | 青岛啤酒股份有限公司 | Malt leaching rate evaluation method based on gene expression monitoring |
CN108531565A (en) * | 2018-04-13 | 2018-09-14 | 青岛啤酒股份有限公司 | Malt solubility evaluation method based on gene expression monitoring |
Non-Patent Citations (4)
Title |
---|
侯红萍主编: "《肿瘤临床试验 第3版》", 31 March 2016, 中国农业大学出版社 * |
胡丽媛 石殿瑜 译: "制麦和糖化过程中不同β葡聚糖水解酶的相关性", 《啤酒科技》 * |
董海洲主编: "《民以食为天》", 31 October 2013, 山东科学技术出版社 * |
金玉来 顾国贤: "制麦对蛋白水解酶活性及氨基氮含量的影响", 《江苏农学院学报》 * |
Cited By (1)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
WO2024037669A1 (en) * | 2022-11-24 | 2024-02-22 | 青岛啤酒股份有限公司 | Method for regulating and controlling malt pyf on basis of gene expression in malting process and use thereof |
Similar Documents
Publication | Publication Date | Title |
---|---|---|
Savazzini et al. | DNA analysis in wines: Development of methods for enhanced extraction and real-time polymerase chain reaction quantification | |
CN108342458B (en) | Malt leaching rate evaluation method based on gene expression monitoring | |
CN112143782A (en) | Method for monitoring stability of barley malting process | |
CN108531565B (en) | Malt solubility evaluation method based on gene expression monitoring | |
JP2003199599A (en) | Method for detecting plant belonging to specific genus | |
CN115786576A (en) | Malt PYF performance prediction method based on barley gene expression in malting process and application thereof | |
JP4450856B2 (en) | Barley variety identification method and barley variety with excellent brewing quality | |
WO2024037669A1 (en) | Method for regulating and controlling malt pyf on basis of gene expression in malting process and use thereof | |
CN107881253A (en) | Barley SSR primer sets and the method using primer sets structure malting barley variety finger-print | |
CN116694663A (en) | Gene related to litchi pulp sugar accumulation type, molecular marker, primer pair and application thereof | |
EP1865072A1 (en) | Method of controlling the flavor of alcoholic drink | |
US10450618B2 (en) | Method for identifying variety of hop | |
Leišová-Svobodová et al. | Malting quality molecular markers for barley breeding | |
WO2011083777A1 (en) | Barley selection method, malt, and fermented malt beverage | |
CN112195254A (en) | Method for interfering MSTN cattle skeletal muscle satellite cell real-time fluorescence quantitative PCR (polymerase chain reaction) reference gene screening | |
CN116411127B (en) | Molecular marker primer combination for rapidly identifying mature-period characters of peach fruits and application thereof | |
CN117737281B (en) | Internal reference genes suitable for fluorescent quantitative PCR in different tissues of Liquidambar formosana and their special primers and applications | |
CN118166148B (en) | SNP locus closely linked with pumpkin fruit size major QTL, molecular marker, primer pair and application thereof | |
CN114164218B (en) | Wheat Dough Stability Time Gene, Its Detection Marker and Application | |
JP5672002B2 (en) | Barley selection method | |
CN116790795B (en) | An InDel molecular marker primer set for identification of honeysuckle plum and its main varieties | |
CN108977567B (en) | Method for identifying hop purity by SSR (simple sequence repeat) fluorescence sequencing technology | |
CN118703687A (en) | Application of PP2A and EIF5A as internal reference genes for fluorescence quantification in different milk thistle tissues | |
CN118291481A (en) | Fluorescence quantitative internal reference genes of Liquidambar formosana with different leaf colors and their primers and applications | |
WO2003031653A1 (en) | METHOD OF SELECTING BARLEY VARIETY, BARLEY β-AMYLASE GENE AND PROCESS FOR PRODUCING MALT ALCOHOLIC DRINK |
Legal Events
Date | Code | Title | Description |
---|---|---|---|
PB01 | Publication | ||
PB01 | Publication | ||
SE01 | Entry into force of request for substantive examination | ||
SE01 | Entry into force of request for substantive examination | ||
RJ01 | Rejection of invention patent application after publication |
Application publication date: 20201229 |
|
RJ01 | Rejection of invention patent application after publication |