CN112126680B - Kit and method for screening trace endocrine disruptors based on fluorescent quantitative PCR - Google Patents
Kit and method for screening trace endocrine disruptors based on fluorescent quantitative PCR Download PDFInfo
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Abstract
本发明公开了一种基于荧光定量PCR筛选痕量内分泌干扰物的试剂盒及方法,包含生物磁珠‑NR‑LBD蛋白溶液、NCoA‑DNA标签嵌合物溶液、一对特异性引物、结合反应液以及荧光定量PCR反应体系。本发明首先将活化的生物磁珠‑NR‑LBD蛋白溶液、NCoA‑DNA标签嵌合物溶液和适量体积的待测物质用结合反应液共同孵育,然后磁性分离清洗所述检测体系并用1×荧光定量PCR反应体系重悬,再加入特异性引物进行荧光定量PCR扩增,根据Ct值定量表征待测物质的核受体活性。本试剂盒及检测方法具有特异性强、重复性好、检出限低、超高灵敏度、测试通量高、快速简便的优点。
The invention discloses a kit and method for screening trace amounts of endocrine disruptors based on fluorescence quantitative PCR, comprising a biological magnetic bead-NR-LBD protein solution, an NCoA-DNA tag chimera solution, a pair of specific primers, a binding reaction solution and fluorescence quantitative PCR reaction system. In the present invention, the activated biological magnetic beads-NR-LBD protein solution, the NCoA-DNA label chimera solution and the appropriate volume of the substance to be tested are incubated together with the binding reaction solution, and then the detection system is magnetically separated and cleaned, and 1× fluorescent The quantitative PCR reaction system was resuspended, and then specific primers were added to carry out fluorescence quantitative PCR amplification, and the nuclear receptor activity of the substance to be tested was quantitatively characterized according to the Ct value. The kit and the detection method have the advantages of strong specificity, good repeatability, low detection limit, ultra-high sensitivity, high test throughput, rapidity and simplicity.
Description
技术领域technical field
本发明涉及环境化合物的检测技术领域,特别是涉及一种基于荧光定量PCR筛选痕量内分泌干扰物的试剂盒及方法。The invention relates to the technical field of detection of environmental compounds, in particular to a kit and method for screening trace endocrine disruptors based on fluorescence quantitative PCR.
背景技术Background technique
生态环境安全和食品安全是关系人类生存的两大重要因素,拥有良好的生态环境和足够安全的食品供给,人类才能更健康地生存和发展。然而,人类工业和农业在推动经济迅猛发展的同时也给环境安全和食品安全带来沉重的负担。越来越多的化合物通过各种方式途径进入到人类的生存环境中,它们在环境中稳定存在,具有很强的生物积累性。内分泌干扰物(Endocrine Disrupting Chemicals,EDCs)也称环境激素,是指环境中存在的外源性干扰人类或动物内分泌系统诸环节并导致异常效应的化学物质。它们通过摄入、接触、积累等各种非直接途径给生物体带来异常影响,即使极低的浓度也可能引起生殖障碍、发育异常、行为异常、免疫功能减退、幼体死亡等问题。内分泌干扰物种类繁多、毒性持久、危害潜伏期长,可过生物富集和食物链的传递,最终对高等动物和人类造成危害。Ecological environment safety and food safety are two important factors related to human survival. With a good ecological environment and sufficient and safe food supply, human beings can survive and develop more healthily. However, while promoting the rapid economic development, human industry and agriculture also bring a heavy burden to environmental safety and food safety. More and more compounds enter the human living environment through various ways, and they exist stably in the environment and have strong bioaccumulation. Endocrine Disrupting Chemicals (EDCs), also known as environmental hormones, refer to chemical substances existing in the environment that interfere with various aspects of the endocrine system of humans or animals and cause abnormal effects. They have abnormal effects on organisms through various indirect ways such as ingestion, exposure, accumulation, etc. Even extremely low concentrations may cause reproductive disorders, developmental abnormalities, behavioral abnormalities, immune dysfunction, and larval death. Endocrine disruptors have a wide variety of types, long-lasting toxicity and long incubation period. They can pass through biological enrichment and food chain transmission, and eventually cause harm to higher animals and humans.
环境内分泌干扰物质种类繁多,结构复杂多变,许多人工合成的化学物质具有内分泌干扰活性。近年来,环境样本中典型EDCs被广泛检出,其检出浓度达到PPt-PPb级。尽管这些痕量化合物的内分泌干扰效应已经引起足够多的重视,但由于其在环境中分布非常广泛,且含量通常低,加之样品基质复杂,其内分泌干扰活性往往难以被检测出。环境中内分泌干扰物的水平与人类及其他生物健康之间存在非常复杂的相关性,内分泌干扰物的检测对保障环境中人和动物的安全非常必要。采用生物学检测方法可快速测定或筛选内分泌干扰物,并确定其内分泌干扰活性。体外试验具有前处理不复杂、经济、快速等优点,因此常用于环境化合物内分泌干扰活性的初步评价。传统的受体结合/转录激活试验大多需要进行实验材料(细胞、酵母等)的培养,对实验室条件要求高,筛检程序复杂、成本较高,受实验材料个体敏感性的限制重复性差,检测精度低,筛选能力有限。此外,免疫分析方法基于抗原抗体的特异性反应来测定EDCs,具有较高的特异性和灵敏度,但抗体制备难度较大,由于抗体的特异性,只适用于单一化合物的检测分析,难以应用到现场监测。环境介质中这些痕量化合物的含量、迁移转化以及生物体对环境内分泌干扰物暴露的研究,离不开对它们的定量分析,因此开发新的快速、灵敏、经济高效的毒理学分析方法显得尤为迫切。There are many kinds of environmental endocrine disrupting substances with complex and changeable structures. Many synthetic chemicals have endocrine disrupting activity. In recent years, typical EDCs have been widely detected in environmental samples, and their detection concentrations have reached the PPt-PPb level. Although enough attention has been paid to the endocrine disrupting effects of these trace compounds, their endocrine disrupting activities are often difficult to detect due to their wide distribution in the environment and usually low levels, as well as complex sample matrices. There is a very complex correlation between the levels of endocrine disruptors in the environment and the health of humans and other organisms, and the detection of endocrine disruptors is necessary to ensure the safety of humans and animals in the environment. The use of biological detection methods can rapidly measure or screen endocrine disruptors, and determine their endocrine disrupting activities. The in vitro test has the advantages of uncomplicated, economical and rapid pretreatment, so it is often used for the preliminary evaluation of the endocrine disrupting activity of environmental compounds. Most of the traditional receptor binding/transcription activation assays require the cultivation of experimental materials (cells, yeast, etc.), which require high laboratory conditions, complex screening procedures, high cost, and poor repeatability due to the individual sensitivity of experimental materials. The detection accuracy is low and the screening ability is limited. In addition, immunoassays are based on the specific reaction of antigen-antibody to detect EDCs, which has high specificity and sensitivity, but the preparation of antibodies is difficult. On-site monitoring. The research on the content, migration and transformation of these trace compounds in environmental media and the exposure of organisms to environmental endocrine disruptors is inseparable from their quantitative analysis. Therefore, it is particularly important to develop new rapid, sensitive, and cost-effective toxicological analysis methods. urgent.
发明内容SUMMARY OF THE INVENTION
为了克服上述现有技术的不足,本发明提供了一种基于荧光定量PCR筛选痕量内分泌干扰物的试剂盒及方法,从而实现环境痕量污染物内分泌干扰活性的高效、高通量、高灵敏快速检测。In order to overcome the above-mentioned deficiencies of the prior art, the present invention provides a kit and method for screening trace endocrine disruptors based on fluorescence quantitative PCR, so as to achieve high efficiency, high throughput and high sensitivity of the endocrine disrupting activity of environmental trace pollutants Quick check.
本发明解决上述技术问题采用的技术方案如下:The technical scheme adopted by the present invention to solve the above-mentioned technical problems is as follows:
本发明的一方面是提供一种基于荧光定量PCR筛选痕量内分泌干扰物的试剂盒,包括生物磁珠-NR-LBD蛋白溶液、NCoA-DNA标签嵌合物溶液、一对特异性引物、结合反应液以及荧光定量PCR反应体系。One aspect of the present invention is to provide a kit for screening trace amounts of endocrine disruptors based on fluorescence quantitative PCR, comprising a biological magnetic bead-NR-LBD protein solution, an NCoA-DNA tag chimera solution, a pair of specific primers, a combination of Reaction solution and fluorescence quantitative PCR reaction system.
进一步地,所述生物磁珠-NR-LBD蛋白通过以下步骤制备得到:Further, the biological magnetic beads-NR-LBD protein is prepared by the following steps:
首先是通过以人或小鼠细胞或组织的cDNA为模板,参考NCBI公布的与人或小鼠健康关系密切的人或小鼠核受体NR的编码序列,对其配体结合域NR-LBD的编码序列进行扩增;The first is to use the cDNA of human or mouse cells or tissues as a template and refer to the coding sequence of the human or mouse nuclear receptor NR published by NCBI, which is closely related to human or mouse health, and its ligand binding domain NR-LBD. Amplification of the coding sequence;
然后经原核细胞表达与纯化获得NR-LBD蛋白。进一步与预处理的生物磁珠联合孵育,获得生物磁珠-NR-LBD蛋白。Then the NR-LBD protein was obtained by prokaryotic expression and purification. It was further incubated with the pretreated biomagnetic beads to obtain the biomagnetic beads-NR-LBD protein.
进一步地,所述NCoA-DNA标签嵌合物通过以下步骤制备得到:Further, the NCoA-DNA tag chimera is prepared by the following steps:
首先是通过以人或小鼠细胞或组织的cDNA为模板,参考NCBI公布的人或小鼠核受体共激活因子NCoA的编码序列,对核受体共激活因子NCoA的编码序列进行扩增;The first is to amplify the coding sequence of nuclear receptor coactivator NCoA by referring to the coding sequence of human or mouse nuclear receptor coactivator NCoA published by NCBI using the cDNA of human or mouse cells or tissues as a template;
然后经原核细胞表达与纯化获得NCoA蛋白。进一步采用DNA-蛋白交联的策略将NCoA蛋白与DNA标签序列组装成NCoA-DNA标签嵌合物。Then the NCoA protein was obtained by prokaryotic expression and purification. The NCoA protein and DNA tag sequences were further assembled into NCoA-DNA tag chimeras by DNA-protein cross-linking strategy.
更进一步地,所述与人或小鼠健康关系密切的核受体NR包括雌激素受体ER、孕激素受体PR、雄激素受体AR、甲状腺激素受体TR、糖皮质激素受体GR、盐皮质激素受体MR、过氧化物酶体增殖物激活受体PPAR、组成型雄甾烷受体CAR、孕烷X受体PXR、维生素D受体VDR、维甲酸受体RAR、维甲酸相关孤核受体ROR、肝脏X受体LXR、法尼醇X受体FXR和雌激素相关受体ERR。Further, the nuclear receptor NR closely related to human or mouse health includes estrogen receptor ER, progesterone receptor PR, androgen receptor AR, thyroid hormone receptor TR, glucocorticoid receptor GR , mineralocorticoid receptor MR, peroxisome proliferator-activated receptor PPAR, constitutive androstane receptor CAR, pregnane X receptor PXR, vitamin D receptor VDR, retinoic acid receptor RAR, retinoic acid Related orphan nuclear receptor ROR, liver X receptor LXR, farnesoid X receptor FXR and estrogen related receptor ERR.
更进一步地,所述ER包括ERα、ERβ;所述TR包括TRα、TRβ;所述GR包括GRα、GRβ;所述PPAR包括PPARα、PPARβ/δ和PPARγ;所述RAR包括RARα、RARβ、RARγ;所述ROR包括RORα、RORβ、RORγ;所述LXR包括LXRα和LXRβ;所述ERR包括ERRα、ERRβ、ERRγ。Further, the ER includes ERα, ERβ; the TR includes TRα, TRβ; the GR includes GRα, GRβ; the PPAR includes PPARα, PPARβ/δ and PPARγ; the RAR includes RARα, RARβ, RARγ; The ROR includes RORα, RORβ, and RORγ; the LXR includes LXRα and LXRβ; the ERR includes ERRα, ERRβ, and ERRγ.
更进一步地,上述人或小鼠核受体共激活因子NCoA包括甾醇受体共激活因子(Steriod Receptor Coactivator,SRC)、激活的信号共整合因子2(Activating SignalCointegrator 2,ASC-2)、过氧化物酶体增殖物激活受体γ共激活因子1(PeroxisomeProliferator Activated ReceptorγCoactivator 1,PGC 1)。Further, the above-mentioned human or mouse nuclear receptor coactivator NCoA includes sterol receptor coactivator (Steriod Receptor Coactivator, SRC), activated signal co-integrator 2 (Activating SignalCointegrator 2, ASC-2), peroxidation Biosome proliferator-activated receptor gamma coactivator 1 (PeroxisomeProliferator Activated Receptor gamma Coactivator 1, PGC 1).
更进一步地,所述SRC包括SRC-1/NcoA1、SRC-2/TIF-2/GRIP1/NcoA、SRC3/NCOA3/AIB、NCOA4、NCOA5、NCOA6/NRC/ASC-2/TRBP/PRIP/RAP250、CBP/p300、CARM1/PRMT1等;所述PGC 1包括PGC-1α、PGC-1β、PRC等。Further, the SRC includes SRC-1/NcoA1, SRC-2/TIF-2/GRIP1/NcoA, SRC3/NCOA3/AIB, NCOA4, NCOA5, NCOA6/NRC/ASC-2/TRBP/PRIP/RAP250, CBP/p300, CARM1/PRMT1, etc.; the PGC 1 includes PGC-1α, PGC-1β, PRC and the like.
进一步地,所述DNA标签序列为来源于自然存在的基因或人工合成基因的,长度为50-300bp的任意核苷酸序列。Further, the DNA tag sequence is any nucleotide sequence with a length of 50-300 bp derived from a naturally occurring gene or an artificially synthesized gene.
进一步地,所述特异性引物由正向引物和反向引物组成,为以所述DNA标签序列为靶序列设计,长度为15-30bp的寡核苷酸序列。Further, the specific primer is composed of a forward primer and a reverse primer, and is an oligonucleotide sequence with a length of 15-30 bp designed with the DNA tag sequence as the target sequence.
进一步地,所述结合反应液组分包括DTT、MgCl2、KCl、Triton X-100、BSA以及Tris缓冲液。优选地,结合反应液组分为1mM DTT、5mM MgCl2、50mM KCl、0.02%Triton X-100、0.1mg/mL BSA、10mM Tris-HCl,pH为7.5。Further, the components of the binding reaction solution include DTT, MgCl 2 , KCl, Triton X-100, BSA and Tris buffer. Preferably, the components of the binding reaction solution are 1 mM DTT, 5 mM MgCl 2 , 50 mM KCl, 0.02% Triton X-100, 0.1 mg/mL BSA, 10 mM Tris-HCl, and the pH is 7.5.
进一步地,所述荧光定量PCR反应体系组分包括2×SYBR Green I qPCR Mix、50×Rox和ddH2O,其用于荧光定量PCR反应时均用ddH2O稀释成1×工作液。Further, the components of the fluorescent quantitative PCR reaction system include 2×SYBR Green I qPCR Mix, 50×Rox and ddH 2 O, which are all diluted with ddH 2 O to 1× working solution when used in the fluorescent quantitative PCR reaction.
本发明的另一方面是提供一种基于荧光定量PCR筛选痕量内分泌干扰物的方法,包括以下步骤:Another aspect of the present invention is to provide a method for screening trace endocrine disruptors based on fluorescence quantitative PCR, comprising the following steps:
(1)生物磁珠-NR-LBD蛋白的活化:取适量生物磁珠-NR-LBD蛋白溶液用预冷的结合反应液清洗活化,磁性分离弃去上清液,重复洗涤一次,用预冷的结合反应液重悬获得活化的生物磁珠-NR-LBD蛋白溶液;(1) Activation of biomagnetic beads-NR-LBD protein: take an appropriate amount of biomagnetic beads-NR-LBD protein solution, wash and activate with pre-cooled binding reaction solution, magnetically separate and discard the supernatant, repeat the washing once, and use pre-cooling The binding reaction solution was resuspended to obtain the activated biological magnetic beads-NR-LBD protein solution;
(2)检测体系的配制和孵育:在反应管将活化的生物磁珠-NR-LBD蛋白溶液、NCoA-DNA标签嵌合物溶液和待测物用预冷的结合反应液混匀,配成检测体系,低温孵育;(2) Preparation and incubation of detection system: Mix the activated biomagnetic beads-NR-LBD protein solution, NCoA-DNA tag chimera solution and the analyte with the pre-cooled binding reaction solution in a reaction tube to prepare a Detection system, low temperature incubation;
(3)检测体系的清洗:孵育结束后用预冷的结合反应液清洗所述检测体系,磁性分离弃去上清液,重复洗涤一次,用预冷的1×荧光定量PCR反应体系重悬;(3) Cleaning of the detection system: after the incubation, the detection system was washed with the pre-cooled binding reaction solution, the supernatant was discarded by magnetic separation, the washing was repeated once, and the pre-cooled 1× fluorescence quantitative PCR reaction system was used to resuspend;
(4)特异性引物的添加和荧光定量PCR扩增反应:在反应管中再添加特异性引物进行荧光定量PCR扩增反应,设置熔解曲线分析扩增产物的特异性,以Ct值反映体系中结合的DNA片段的量,以添加蒸馏水的空白对照为本底,采用2-ΔΔCt法,计算待测物的相对受体活性。(4) Addition of specific primers and fluorescence quantitative PCR amplification reaction: Add specific primers to the reaction tube for fluorescence quantitative PCR amplification reaction, set melting curve to analyze the specificity of the amplified product, and reflect the Ct value in the system The amount of DNA fragments bound was based on the blank control with distilled water as the base, and the 2- ΔΔCt method was used to calculate the relative receptor activity of the analyte.
进一步地,试剂盒的准备:包含生物磁珠-NR-LBD蛋白和NCoA-DNA标签嵌合物的制备:Further, preparation of the kit: preparation of biomagnetic beads-NR-LBD protein and NCoA-DNA tag chimera:
其中,所述生物磁珠-NR-LBD蛋白首先是通过以人或小鼠细胞或组织的cDNA为模板,参考NCBI公布的与人或小鼠健康关系密切的人或小鼠核受体NR的编码序列,对其配体结合域NR-LBD的编码序列进行扩增,然后经原核细胞表达与纯化获得NR-LBD蛋白。进一步与预处理的生物磁珠联合孵育,获得生物磁珠-NR-LBD蛋白。所述NCoA-DNA标签嵌合物首先是通过以人或小鼠细胞或组织的cDNA为模板,参考NCBI公布的人或小鼠核受体共激活因子NCoA的编码序列,对核受体共激活因子NCoA的编码序列进行扩增,然后经原核细胞表达与纯化获得NCoA蛋白。进一步采用DNA-蛋白交联的策略将NCoA蛋白与DNA标签序列组装成NCoA-DNA标签嵌合物。Among them, the biological magnetic beads-NR-LBD protein is firstly obtained by using the cDNA of human or mouse cells or tissues as a template, referring to the human or mouse nuclear receptor NR published by NCBI which is closely related to human or mouse health. The coding sequence is amplified, and the coding sequence of the ligand binding domain NR-LBD is amplified, and then the NR-LBD protein is obtained by expressing and purifying in prokaryotic cells. It was further incubated with the pretreated biomagnetic beads to obtain the biomagnetic beads-NR-LBD protein. The NCoA-DNA tag chimera firstly uses human or mouse cell or tissue cDNA as a template and refers to the coding sequence of human or mouse nuclear receptor coactivator NCoA published by NCBI to co-activate nuclear receptors. The coding sequence of factor NCoA is amplified, and then expressed and purified by prokaryotic cells to obtain NCoA protein. The NCoA protein and DNA tag sequences were further assembled into NCoA-DNA tag chimeras by using the strategy of DNA-protein cross-linking.
进一步地,所述与人或小鼠健康关系密切的核受体NR包括雌激素受体ER、孕激素受体PR、雄激素受体AR、甲状腺激素受体TR、糖皮质激素受体GR、盐皮质激素受体MR、过氧化物酶体增殖物激活受体PPAR、组成型雄甾烷受体CAR、孕烷X受体PXR、维生素D受体VDR、维甲酸受体RAR、维甲酸相关孤核受体ROR、肝脏X受体LXR、法尼醇X受体FXR和雌激素相关受体ERR。Further, the nuclear receptor NR closely related to human or mouse health includes estrogen receptor ER, progesterone receptor PR, androgen receptor AR, thyroid hormone receptor TR, glucocorticoid receptor GR, Mineralocorticoid receptor MR, peroxisome proliferator-activated receptor PPAR, constitutive androstane receptor CAR, pregnane X receptor PXR, vitamin D receptor VDR, retinoic acid receptor RAR, retinoic acid related Orphan nuclear receptor ROR, liver X receptor LXR, farnesoid X receptor FXR and estrogen-related receptor ERR.
更进一步地,所述ER包括ERα、ERβ;所述TR包括TRα、TRβ;所述GR包括GRα、GRβ;所述PPAR包括PPARα、PPARβ/δ和PPARγ;所述RAR包括RARα、RARβ、RARγ;所述ROR包括RORα、RORβ、RORγ;所述LXR包括LXRα和LXRβ;所述ERR包括ERRα、ERRβ、ERRγ。Further, the ER includes ERα, ERβ; the TR includes TRα, TRβ; the GR includes GRα, GRβ; the PPAR includes PPARα, PPARβ/δ and PPARγ; the RAR includes RARα, RARβ, RARγ; The ROR includes RORα, RORβ, and RORγ; the LXR includes LXRα and LXRβ; the ERR includes ERRα, ERRβ, and ERRγ.
进一步地,上述人或小鼠核受体共激活因子NCoA包括甾醇受体共激活因子(Steriod Receptor Coactivator,SRC)、激活的信号共整合因子2(Activating SignalCointegrator 2,ASC-2)、过氧化物酶体增殖物激活受体γ共激活因子1(PeroxisomeProliferator Activated ReceptorγCoactivator 1,PGC 1)。Further, the above-mentioned human or mouse nuclear receptor coactivator NCoA includes sterol receptor coactivator (Steriod Receptor Coactivator, SRC), activated signal co-integrator 2 (Activating SignalCointegrator 2, ASC-2), peroxide Peroxisome Proliferator Activated Receptor γ Coactivator 1 (PGC 1).
更进一步地,所述SRC包括SRC-1/NcoA1、SRC-2/TIF-2/GRIP1/NcoA、SRC3/NCOA3/AIB、NCOA4、NCOA5、NCOA6/NRC/ASC-2/TRBP/PRIP/RAP250、CBP/p300、CARM1/PRMT1等;所述PGC 1包括PGC-1α、PGC-1β、PRC等。Further, the SRC includes SRC-1/NcoA1, SRC-2/TIF-2/GRIP1/NcoA, SRC3/NCOA3/AIB, NCOA4, NCOA5, NCOA6/NRC/ASC-2/TRBP/PRIP/RAP250, CBP/p300, CARM1/PRMT1, etc.; the PGC 1 includes PGC-1α, PGC-1β, PRC and the like.
进一步地,步骤(1)、(2)和(3)中所述预冷方法为置于冰上;所述预冷及低温温度为0-8℃,优选为4℃。Further, the precooling method in steps (1), (2) and (3) is to place on ice; the precooling and low temperature temperature are 0-8°C, preferably 4°C.
进一步地,步骤(2)所述生物磁珠-NR-LBD蛋白在检测体系中的浓度范围(以NR-LBD蛋白计)为0.01-0.05μg/μL,优选为0.03μg/μL;所述NCoA-DNA标签嵌合物在检测体系中的浓度范围(以NCoA蛋白计)为0.01-0.05μg/μL,优选为0.03μg/μL。Further, the concentration range of the biological magnetic beads-NR-LBD protein in the detection system (calculated as NR-LBD protein) in step (2) is 0.01-0.05 μg/μL, preferably 0.03 μg/μL; the NCoA - The concentration range of the DNA tag chimera in the detection system (calculated as NCoA protein) is 0.01-0.05 μg/μL, preferably 0.03 μg/μL.
进一步地,步骤(2)所述反应孵育时间为20-60min,优选为30min。Further, the reaction incubation time in step (2) is 20-60 min, preferably 30 min.
进一步地,步骤(1)、(2)和(3)中所述结合反应液组分包括DTT、MgCl2、KCl、TritonX-100、BSA以及Tris缓冲液。优选地,结合反应液组分为1mM DTT、5mM MgCl2、50mM KCl、0.02%Triton X-100、0.1mg/mL BSA、10mM Tris-HCl,pH为7.5。Further, the components of the binding reaction solution in steps (1), (2) and (3) include DTT, MgCl 2 , KCl, TritonX-100, BSA and Tris buffer. Preferably, the components of the binding reaction solution are 1 mM DTT, 5 mM MgCl 2 , 50 mM KCl, 0.02% Triton X-100, 0.1 mg/mL BSA, 10 mM Tris-HCl, and the pH is 7.5.
进一步地,步骤(3)所述1×荧光定量PCR反应体系组分包括用ddH2O稀释的1×SYBR Green I qPCR Mix和1×Rox。Further, the components of the 1× fluorescence quantitative PCR reaction system in step (3) include 1× SYBR Green I qPCR Mix and 1× Rox diluted with ddH 2 O.
本发明基于荧光定量PCR技术快速检测化学品的内分泌干扰活性,其主要反应组分为生物磁珠-NR-LBD蛋白溶液、NCoA-DNA标签嵌合物溶液和一对特异性引物。本发明的原理为:待测样品中的受检物质(有内分泌干扰活性的化合物)与固相载体(生物磁珠)上的NR-LBD受体蛋白结合,改变受体蛋白的构象,使其能与NCoA-DNA标签嵌合物上的NCoA进一步结合形成聚合物。然后通过洗板除去非结合物并用1×荧光定量PCR反应体系重悬,此时再加入特异性引物通过荧光定量PCR扩增将信号放大,SYBR Green I染料结合聚合物中的双链DNA片段发出荧光。因而监测扩增循环过程中DNA扩增得到的荧光强度,根据不同待测物浓度下的Ct值可间接表征不同待测物与受体蛋白结合的强弱。The invention rapidly detects the endocrine disrupting activity of chemicals based on fluorescence quantitative PCR technology, and the main reaction components are biological magnetic beads-NR-LBD protein solution, NCoA-DNA tag chimera solution and a pair of specific primers. The principle of the present invention is as follows: the tested substance (compound with endocrine disrupting activity) in the sample to be tested is combined with the NR-LBD receptor protein on the solid phase carrier (biological magnetic bead), and the conformation of the receptor protein is changed, so that the It can further combine with NCoA on the NCoA-DNA tag chimera to form a polymer. Then, wash the plate to remove the unbound material and resuspend it with 1× fluorescent quantitative PCR reaction system. At this time, specific primers are added to amplify the signal by fluorescent quantitative PCR amplification, and the double-stranded DNA fragment in the SYBR Green I dye-binding polymer is emitted. Fluorescence. Therefore, the fluorescence intensity obtained by DNA amplification during the amplification cycle is monitored, and the strength of the binding between different analytes and receptor proteins can be indirectly characterized according to the Ct values at different analyte concentrations.
与现有技术相比,本发明的有益效果是:Compared with the prior art, the beneficial effects of the present invention are:
(1)特异性强、重复性好、检出限低、超高灵敏度:(1) Strong specificity, good repeatability, low detection limit, and ultra-high sensitivity:
本发明提供的NR-LBD受体蛋白被固定到固相载体(生物磁珠)上,结构和性质更稳定,能够抵抗一定的环境因素干扰。进而联合实时荧光定量PCR技术作为定量手段,通过PCR使反应体系中聚合的DNA片段呈指数级扩增,从而将检测信号放大数百万倍,检出限可达1×10-13M,灵敏度大大高于常见的ELISA和免疫荧光等免疫检测方法。The NR-LBD receptor protein provided by the present invention is immobilized on a solid-phase carrier (biomagnetic bead), and has more stable structure and properties, and can resist certain environmental factors. Then combined with real-time fluorescent quantitative PCR technology as a quantitative method, the polymerized DNA fragments in the reaction system are amplified exponentially by PCR, thereby amplifying the detection signal millions of times, the detection limit can reach 1 × 10 -13 M, and the sensitivity Much higher than the common immunodetection methods such as ELISA and immunofluorescence.
(2)反应体积小、测试通量高、易自动化:(2) Small reaction volume, high test throughput, and easy automation:
本发明提供的检测方法所用反应管为96孔板、384孔板或芯片等实时定量PCR耗材,可在同一块反应板上同时进行多个样品内分泌干扰活性或同一个样品多个核受体活性的检测,易于实现自动化和高通量检测,可用于大量样本的筛选。以384孔板测试为例,每孔反应体积仅需10-25μL,可一次实现20种化学物质特定受体激动剂或拮抗剂活性的高通量测定。具体测算如下:20种化学物质(6个浓度梯度×3平行/物质)=360孔+1种阳性对照物质(5个浓度梯度×3平行/物质)=21孔+3孔(空白对照)+3孔(阴性对照)。因此,利用本发明提供的检测方案,通量可以比现有技术提高5倍,由一次测试4种物质增加到20种物质。The reaction tubes used in the detection method provided by the present invention are real-time quantitative PCR consumables such as 96-well plate, 384-well plate or chip, etc., and the endocrine disrupting activity of multiple samples or the activities of multiple nuclear receptors of the same sample can be simultaneously performed on the same reaction plate. The detection is easy to realize automation and high-throughput detection, and can be used for the screening of a large number of samples. Taking the 384-well plate test as an example, the reaction volume per well is only 10-25 μL, which can realize the high-throughput determination of the specific receptor agonist or antagonist activity of 20 chemicals at one time. The specific calculation is as follows: 20 chemical substances (6 concentration gradients × 3 parallels/substance) = 360 wells + 1 positive control substance (5 concentration gradients × 3 parallels/substance) = 21 wells + 3 wells (blank control) + 3 wells (negative control). Therefore, using the detection scheme provided by the present invention, the throughput can be increased by 5 times compared with the prior art, and the test can be increased from 4 kinds of substances to 20 kinds of substances at one time.
(3)快速简便:(3) Quick and easy:
本发明提供的检测方法不需要活细胞作为实验材料,操作简便,易于掌握和运用,分析周期短。以384孔板测试为例,整个检测时长仅为3.5小时。具体测算如下:活化预混试剂和测试物质384孔加样(1.5小时)+低温孵育反应(0.5小时)+上机扩增读数(1.5小时)=3.5小时。因此,利用本发明提供的检测方案,速度可以比现有技术提高3倍以上,可以由现在的12小时完成一次测试减少到3.5小时即可完成一次测试。The detection method provided by the present invention does not require living cells as experimental materials, is simple to operate, easy to grasp and use, and has a short analysis period. Taking the 384-well plate test as an example, the entire detection time is only 3.5 hours. The specific calculation is as follows: 384-well loading of activated premixed reagents and test substances (1.5 hours) + low temperature incubation reaction (0.5 hours) + on-board amplification reading (1.5 hours) = 3.5 hours. Therefore, using the detection scheme provided by the present invention, the speed can be increased by more than 3 times compared with the prior art, and one test can be completed in 3.5 hours from the current 12 hours.
附图说明Description of drawings
图1为一种基于荧光定量PCR筛选痕量内分泌干扰物的方法示意图。Figure 1 is a schematic diagram of a method for screening trace endocrine disruptors based on real-time PCR.
图2为不同化学物质的mERα受体活性曲线图。(A)为双酚类物质的mERα受体活性;(B)为水杨酸酯类物质的mERα受体活性;(C)和(D)为烷基酚类物质的mERα受体活性。Figure 2 is a graph showing the mERα receptor activity curves of different chemicals. (A) is the mERα receptor activity of bisphenols; (B) is the mERα receptor activity of salicylates; (C) and (D) are the mERα receptor activities of alkylphenols.
具体实施方式Detailed ways
下面将结合本发明实施例中的附图1,对本发明实施例中的技术方案进行清楚、完整地描述,显然,所描述的实施例仅仅是本发明一部分实施例,而不是全部的实施例。The technical solutions in the embodiments of the present invention will be clearly and completely described below with reference to FIG.
一、生物磁珠-小鼠mERα-LBD蛋白的制备1. Preparation of biological magnetic beads-mouse mERα-LBD protein
用Trizol试剂提取小鼠肝脏组织的总RNA,反转成cDNA为模板。参考NCBI公布的小鼠雌激素相关受体mERα(NCBI GenBank:NP_001289460.1)的编码序列,设计引物扩增得到其序列。利用双酶切方法,将mERα-LBD(314..551aa)的编码基因连接到原核表达载体pGEX-4T-1上,转化大肠杆菌DH5α感受态细胞,筛选阳性克隆测序,获得重组表达载体pGEX-4T-mERα-LBD。提取重组质粒,转化大肠杆菌BL21感受态细胞,获得mERα-LBD重组表达菌。将重组菌于37℃下进行放大培养,加入IPTG诱导表达。然后通过超声破碎、亲和层析对重组蛋白进行纯化得到mERα-LBD蛋白,通过SDS-PAGE电泳检测目的蛋白的表达和纯化情况,并测定纯化蛋白的浓度,分析重组蛋白的酶学性质。进一步与预处理的生物磁珠联合孵育,获得生物磁珠-mERα-LBD蛋白。Total RNA from mouse liver tissue was extracted with Trizol reagent, and reversed into cDNA as template. Referring to the coding sequence of mouse estrogen-related receptor mERα (NCBI GenBank: NP_001289460.1) published by NCBI, primers were designed to amplify the sequence. The encoding gene of mERα-LBD (314..551aa) was ligated into the prokaryotic expression vector pGEX-4T-1 by double digestion method, transformed into E. coli DH5α competent cells, screened for positive clones and sequenced to obtain the recombinant expression vector pGEX- 4T-mERα-LBD. The recombinant plasmid was extracted and transformed into E. coli BL21 competent cells to obtain mERα-LBD recombinant expression bacteria. The recombinant bacteria were amplified and cultured at 37°C, and IPTG was added to induce expression. Then, the recombinant protein was purified by sonication and affinity chromatography to obtain mERα-LBD protein. The expression and purification of the target protein were detected by SDS-PAGE electrophoresis, and the concentration of the purified protein was determined to analyze the enzymatic properties of the recombinant protein. It was further incubated with the pretreated biomagnetic beads to obtain the biomagnetic beads-mERα-LBD protein.
二、mNCoA2-DNA标签嵌合物的制备2. Preparation of mNCoA2-DNA tag chimeras
用Trizol试剂提取小鼠肝脏组织的总RNA,反转成cDNA为模板。参考NCBI公布的小鼠核受体共激活因子mNCoA2(NCBI GenBank:NP_001289631.1)的编码序列,设计引物扩增得到其序列。利用双酶切的方法,将mNCoA2连接到原核表达载体pET-28a(+)上,转化大肠杆菌DH5α感受态细胞,筛选阳性克隆。提取重组质粒,转化大肠杆菌BL21感受态细胞,获得mNCoA2重组表达菌。将重组菌于37℃下进行放大培养,加入IPTG诱导表达。然后通过超声破碎、亲和层析对重组蛋白分别进行纯化得到mNCoA2蛋白,通过SDS-PAGE电泳检测目的蛋白的表达和纯化情况,并测定纯化蛋白的浓度,分析重组蛋白的酶学性质。选择质粒pET-28a(+)上酶切位点Nco I和Xho I之间的一段DNA序列为PCR扩增时的标签序列,进一步通过生物素-亲和素体系将mNCoA2蛋白与DNA标签序列组装成mNCoA2-DNA标签嵌合物。Total RNA from mouse liver tissue was extracted with Trizol reagent, and reversed into cDNA as template. Referring to the coding sequence of mouse nuclear receptor coactivator mNCoA2 (NCBI GenBank: NP_001289631.1) published by NCBI, primers were designed to amplify the sequence. Using the method of double digestion, mNCoA2 was connected to the prokaryotic expression vector pET-28a(+), transformed into E. coli DH5α competent cells, and screened for positive clones. The recombinant plasmid was extracted and transformed into E. coli BL21 competent cells to obtain mNCoA2 recombinant expression bacteria. The recombinant bacteria were amplified and cultured at 37°C, and IPTG was added to induce expression. Then, the recombinant protein was purified by sonication and affinity chromatography to obtain mNCoA2 protein. The expression and purification of the target protein were detected by SDS-PAGE electrophoresis, the concentration of purified protein was determined, and the enzymatic properties of the recombinant protein were analyzed. A DNA sequence between the restriction sites Nco I and Xho I on the plasmid pET-28a(+) was selected as the tag sequence during PCR amplification, and the mNCoA2 protein was further assembled with the DNA tag sequence through the biotin-avidin system into mNCoA2-DNA tag chimeras.
三、不同浓度化学品mERα受体活性的快速测定3. Rapid determination of mERα receptor activity of chemicals at different concentrations
以mERα的反向激动剂他莫昔芬为标准样品,检测化学品的雌激素相关受体活性。所测试化合物包括:双酚类:双酚F(BPF)、双酚S(BPS)、双酚芴(BHPF)、双酚AP(BPAP)、双酚BP(BPBP);水杨酸酯类:水杨酸丙酯、水杨酸丁酯、水杨酸异丁酯和乙二醇水杨酸酯;烷基酚类:4-甲基苯酚、4-乙基苯酚、4-异丙基苯酚、4-仲丁基苯酚、4-叔丁基苯酚、4-戊基苯酚、4-叔戊基苯酚、4-叔辛基苯酚、壬基酚及4-苄基苯酚。Using tamoxifen, an inverse agonist of mERα, as a standard sample, the estrogen-related receptor activity of chemicals was detected. Compounds tested include: Bisphenols: Bisphenol F (BPF), Bisphenol S (BPS), Bisphenol Fluorene (BHPF), Bisphenol AP (BPAP), Bisphenol BP (BPBP); Salicylates: Propyl salicylate, butyl salicylate, isobutyl salicylate, and ethylene glycol salicylate; alkylphenols: 4-methylphenol, 4-ethylphenol, 4-isopropylphenol , 4-sec-butylphenol, 4-tert-butylphenol, 4-pentylphenol, 4-tert-amylphenol, 4-tert-octylphenol, nonylphenol and 4-benzylphenol.
取≥1.2mg的生物磁珠-mERα-LBD蛋白溶液用预冷的结合反应液(1mM DTT、5mMMgCl2、50mM KCl、0.02%Triton X-100、0.1mg/mL BSA、10mM Tris-HCl,pH 7.5)清洗活化,磁性分离弃去上清液,重复洗涤一次,用500μL预冷的结合反应液重悬获得活化的生物磁珠-mERα-LBD蛋白溶液。将384孔板放置冰上预冷,在每个反应孔中加入10μL活化的生物磁珠-mERα-LBD蛋白、10μL mNCoA2-DNA标签嵌合物和1μL不同浓度的待测物质,用预冷的结合反应液混匀配成检测体系,低温孵育30min。孵育结束后用预冷的结合反应液清洗检测体系,磁性分离弃去上清液,重复洗涤一次,用8μL预冷的1×荧光定量PCR反应体系(1×SYBRGreen I qPCR Mix和1×Rox)重悬。随后在每个反应孔中再添加1μL特异性正向引物(其序列为5'ATGGGCAGCAGCCATCAT 3')和1μL特异性反向引物(其序列为5'ATCCGCGACCCATTTGCT3')。用封板膜封住各孔,置于ABI 7500荧光定量PCR仪中进行荧光定量PCR扩增反应。扩增程序为:95℃预变性5min;95℃变性30s,55℃退火30s,72℃延伸1min,循环40次;最后72℃延伸5min。反应结束后确认荧光定量PCR的扩增曲线和熔解曲线,计算比较不同测试物质的mERα受体活性。结果如图2所示,双酚类物质中BPF和BPS的mERα受体活性高于其他三个双酚物质,BPAP仅在低浓度时具有雌激素活性,为弱雌激素受体活性物质,而BHPF、BPBP几乎没有雌激素受体活性;水杨酸类物质中水杨酸异丁酯mERα受体活性最高,其次是水杨酸丁酯具有较为显著的雌激素活性,而水杨酸丙酯和乙二醇水杨酸酯活性均较弱;烷基酚类物质中4-乙基苯酚、4-异丙基苯酚、4-叔丁基苯酚、4-叔戊基苯酚、4-叔辛基苯酚、4-戊基苯酚、4-苄基苯酚、4-仲丁基苯酚、壬基酚和4-甲基苯酚均具有较高雌激素受体活性,是雌激素受体激动剂。Take ≥1.2 mg of biomagnetic beads-mERα-LBD protein solution with pre-cooled binding reaction solution (1 mM DTT, 5 mM MgCl 2 , 50 mM KCl, 0.02% Triton X-100, 0.1 mg/mL BSA, 10 mM Tris-HCl, pH 7.5) Wash and activate, magnetic separation, discard the supernatant, repeat the washing once, and resuspend with 500 μL of pre-cooled binding reaction solution to obtain an activated biological magnetic beads-mERα-LBD protein solution. The 384-well plate was pre-cooled on ice, and 10 μL of activated biomagnetic beads-mERα-LBD protein, 10 μL of mNCoA2-DNA tag chimera, and 1 μL of different concentrations of the test substance were added to each reaction well. Combine the reaction solution and mix to form a detection system, and incubate at low temperature for 30 min. After the incubation, wash the detection system with the pre-cooled binding reaction solution, discard the supernatant by magnetic separation, repeat the washing once, and
四、4-辛基酚不同核受体活性的快速测定4. Rapid determination of different nuclear receptor activities of 4-octylphenol
采用384孔板测试4-辛基酚不同核受体的活性,所测试核受体mNR活性包括ERα、ERβ、TRα、TRβ、PPARα、PPARβ/δ、PPARγ、VDR、RARα、RARγ、LXRα、LXRβ、FXR、ERRα、ERRβ、ERRγ,受体活性测试同时采用各个受体的天然配体作为对照。如实施例一所示方法,分别制备上述受体mNR-LBD蛋白并用生物磁珠固定。取≥1.2mg的生物磁珠-mNR-LBD蛋白溶液用预冷的结合反应液(1mM DTT、5mM MgCl2、50mM KCl、0.02%Triton X-100、0.1mg/mL BSA、10mMTris-HCl,pH 7.5)清洗活化,磁性分离弃去上清液,重复洗涤一次,用500μL预冷的结合反应液重悬获得活化的生物磁珠-mNR-LBD蛋白溶液。将384孔板放置冰上预冷,在每个反应孔中加入10μL活化的生物磁珠-mNR-LBD蛋白、10μL mNCoA2-DNA标签嵌合物和1μL 4-辛基酚溶液,用预冷的结合反应液混匀配成检测体系,低温孵育30min。孵育结束后用预冷的结合反应液清洗检测体系,磁性分离弃去上清液,重复洗涤一次,用8μL预冷的1×荧光定量PCR反应体系(1×SYBR Green I qPCR Mix和1×Rox)重悬。随后在每个反应孔中再添加1μL特异性正向引物(其序列为5'ATGGGCAGCAGCCATCAT 3')和1μL特异性反向引物(其序列为5'ATCCGCGACCCATTTGCT 3')。用封板膜封住各孔,置于ABI 7500荧光定量PCR仪中进行荧光定量PCR扩增反应。扩增程序为:95℃预变性5min;95℃变性30s,55℃退火30s,72℃延伸1min,循环40次;最后72℃延伸5min。反应结束后确认荧光定量PCR的扩增曲线和熔解曲线,计算比较4-辛基酚的不同mNR受体活性。结果表明4-辛基酚具有强的ERα、ERβ和RARγ活性,具有较弱的RARα、LXRα、FXR和ERRα活性,而对其余受体没有活性。The activities of different nuclear receptors of 4-octylphenol were tested by 384-well plate. The tested nuclear receptor mNR activities included ERα, ERβ, TRα, TRβ, PPARα, PPARβ/δ, PPARγ, VDR, RARα, RARγ, LXRα, LXRβ , FXR, ERRα, ERRβ, ERRγ, the receptor activity test also used the natural ligand of each receptor as a control. According to the method shown in Example 1, the above-mentioned receptor mNR-LBD proteins were prepared and immobilized with biological magnetic beads. Take ≥1.2mg biomagnetic beads-mNR-LBD protein solution with pre-cooled binding reaction solution (1mM DTT, 5mM MgCl 2 , 50mM KCl, 0.02% Triton X-100, 0.1mg/mL BSA, 10mM Tris-HCl, pH 7.5) Wash and activate, magnetic separation, discard the supernatant, repeat the washing once, and resuspend with 500 μL of pre-cooled binding reaction solution to obtain the activated biological magnetic beads-mNR-LBD protein solution. The 384-well plate was pre-cooled on ice, and 10 μL of activated biomagnetic beads-mNR-LBD protein, 10 μL of mNCoA2-DNA tag chimera and 1 μL of 4-octylphenol solution were added to each reaction well. Combine the reaction solution and mix to form a detection system, and incubate at low temperature for 30 min. After the incubation, the detection system was washed with the pre-cooled binding reaction solution, the supernatant was discarded by magnetic separation, and the washing was repeated once. )Resuspended. Then 1 μL of specific forward primer (whose sequence is 5′ATGGGCAGCAGCCATCAT 3′) and 1 μL of specific reverse primer (whose sequence is 5′ATCCGCGACCCATTTGCT 3′) were then added to each reaction well. Each well was sealed with a sealing film, and placed in an ABI 7500 fluorescence quantitative PCR instrument for fluorescence quantitative PCR amplification reaction. The amplification program was as follows: pre-denaturation at 95 °C for 5 min; denaturation at 95 °C for 30 s, annealing at 55 °C for 30 s, extension at 72 °C for 1 min, 40 cycles; and final extension at 72 °C for 5 min. After the reaction, the amplification curve and melting curve of fluorescence quantitative PCR were confirmed, and the different mNR receptor activities of 4-octylphenol were calculated and compared. The results showed that 4-octylphenol has strong ERα, ERβ and RARγ activities, weak RARα, LXRα, FXR and ERRα activities, but no activity on the remaining receptors.
以上实施例仅用以说明本发明的技术方案而非对其进行限制,本领域的普通技术人员可以对本发明的技术方案进行修改或者等同替换,本发明的保护范围以权利要求所述为准。The above embodiments are only used to illustrate the technical solutions of the present invention and not to limit them. Those skilled in the art can modify or equivalently replace the technical solutions of the present invention. The protection scope of the present invention is subject to the claims.
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