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CN111876526A - A microfluidic chip for detection and typing of HPV virus - Google Patents

A microfluidic chip for detection and typing of HPV virus Download PDF

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CN111876526A
CN111876526A CN202010786653.2A CN202010786653A CN111876526A CN 111876526 A CN111876526 A CN 111876526A CN 202010786653 A CN202010786653 A CN 202010786653A CN 111876526 A CN111876526 A CN 111876526A
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何小镇
聂泳忠
许万里
余桂荣
马福军
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Western Ma Dazhou Pingxiang Medical Technology Co ltd
Fuzhou University
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Fuzhou University
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Abstract

The invention provides a microfluidic chip for detecting HPV virus and typing, which is characterized in that a high-specificity MGB probe method is utilized, specific primers and probes of various types are designed in the HPV gene E6E 7 area, the primers and probes and an enzyme premix which can be freeze-dried into powder are embedded in the microfluidic chip, and the obtained microfluidic chip is used for detecting HPV virus.

Description

一种用于检测HPV病毒和分型的微流控芯片A microfluidic chip for detection and typing of HPV virus

技术领域technical field

本发明属于医学检测技术领域,具体涉及一种用于检测HPV病毒和分型的微流控芯片。The invention belongs to the technical field of medical detection, and in particular relates to a microfluidic chip for detecting and typing HPV viruses.

背景技术Background technique

人乳头瘤病毒(Human Paillomavirus,HPV),属于乳头瘤病毒科,是一种小分子的、无被膜包被的、环状双链DNA病毒,含有约7900 对碱基(bp),共有3 个基因区组成,包括早期区(Early Region,E 区)、晚期区(Late Region,L 区) 区和与非编码区(UncodingRegion,UCR) 或上游调控区(URR)。E 区按顺序为E6、E7、E1、E2、E3、E4 和E5 共7 个基因,参与病毒DNA 的复制、转录、编码病毒蛋白、维持细胞内病毒的高拷贝数的基因,其中E6 和E7 是HPV 的主要致癌基因,与病毒细胞转化功能及致癌性有关。HPV 通过直接或间接接触污染物品或性传播感染人类。该病毒不但具有宿主特异性,而且具有组织特异性,只能感染人的皮肤和粘膜上皮细胞,引起人类皮肤的多种乳头状瘤或疣及生殖道上皮增生性损伤。Human papillomavirus (Human Paillomavirus, HPV), belonging to the papillomavirus family, is a small molecule, non-encapsulated, circular double-stranded DNA virus, containing about 7900 base pairs (bp), a total of 3 Gene region composition, including early region (Early Region, E region), late region (Late Region, L region) region and non-coding region (UncodingRegion, UCR) or upstream regulatory region (URR). The E region consists of 7 genes in order, E6, E7, E1, E2, E3, E4 and E5, which are involved in viral DNA replication, transcription, encoding viral proteins, and maintaining a high copy number of intracellular viruses. Among them, E6 and E7 It is the main oncogene of HPV, which is related to the transformation function of virus cells and carcinogenicity. HPV infects humans through direct or indirect contact with contaminated items or through sexual transmission. The virus is not only host-specific, but also tissue-specific, and can only infect human skin and mucosal epithelial cells, causing a variety of papilloma or warts of human skin and proliferative damage to the reproductive tract epithelium.

全球范围的研究结果显示,70%~80%的女性在其一生中会有至少一次的HPV 感染,在99.7%的宫颈癌患者体内检测到高危型HPV DNA 的存在,其中HPV16 型、18 型、45 型和31 型感染占80%。低危型HPV 一般与尖锐湿疣或低度鳞状上皮内病变相关,极少引起浸润癌。因此HPV检测对HPV病毒的检测和分型显得极为重要。关于高危型与低危型的划分,国际上许多机构都给出了参考建议,依据WHO 国际癌症研究机构(IARC)及其他国际组织的研究成果,将HPV16、18、31、33、35、39、45、51、52、56、58、59、68 等13 种基因型列为高危型别,26、53、66、73、82 等5 种基因型列为中等风险型别。Global research results show that 70% to 80% of women will have at least one HPV infection in their lifetime, and the presence of high-risk HPV DNA has been detected in 99.7% of cervical cancer patients, including HPV16, 18, and HPV types. Type 45 and 31 infections accounted for 80%. Low-risk HPV types are generally associated with condyloma acuminatum or low-grade squamous intraepithelial lesions and rarely cause invasive carcinoma. Therefore, HPV detection is extremely important for the detection and typing of HPV virus. Regarding the classification of high-risk and low-risk types, many international institutions have given reference recommendations. According to the research results of the WHO International Agency for Research on Cancer (IARC) and other international organizations, HPV16, 18, 31, 33, 35, 39 13 genotypes including 45, 51, 52, 56, 58, 59, and 68 were classified as high-risk types, and 5 genotypes including 26, 53, 66, 73, and 82 were classified as medium-risk types.

在传统的宫颈癌的诊断主要遵循“三阶梯式”诊断程序,即宫颈细胞学、阴道镜及组织病理学检查。传统的女性宫颈癌早期筛查主要是依靠这种“三阶梯式”诊断程序,在用三种检测方法时,在宫颈细胞取样过程中容易使得病变细胞脱离,制片过程也极易使得细胞形态发生变化或者被其它炎症细胞和血细胞覆盖,同时结果判定太依靠于个人主观判定,因此很容易发生疾病漏诊。当然现在也出现了一些现代分子检测技术,如DNA杂交检测技术、Q-PCR荧光染料检测技术等,DNA杂交技术虽然检测结果特异高,但是检测成本和检测过程复杂,极容易使得检测过程出现差错,产生假阴性结果;Q-PCR荧光染料检测技术虽然成本低,但是具有一个显著的缺点,即其特异性非常容易受到非特异性基因扩增和引物二聚体形成的影响,这使得双链DNA 结合荧光染料qPCR 方法一直无法能够有效地应用于临床检测。然而MGB探针法qPCR 可以有效地解决双链DNA 结合荧光染料qPCR 非特异性问题,MGB探针法qPCR具有特异性极强、灵敏度高、重复性好、定量准确、速度快等优点,可以在未来的临床检测和微流控芯片检测中成为分子诊断的重要工具。The traditional diagnosis of cervical cancer mainly follows the "three-step" diagnostic procedure, namely cervical cytology, colposcopy and histopathological examination. The traditional early screening of cervical cancer in women mainly relies on this "three-step" diagnostic procedure. When three detection methods are used, the diseased cells are easily detached during the cervical cell sampling process, and the cell morphology is also easily changed during the preparation process. Changes or are covered by other inflammatory cells and blood cells, and the result judgment is too dependent on personal subjective judgment, so it is easy to miss the diagnosis of the disease. Of course, there are also some modern molecular detection technologies, such as DNA hybridization detection technology, Q-PCR fluorescent dye detection technology, etc. Although DNA hybridization technology has high detection results, the detection cost and detection process are complicated, and it is very easy to make errors in the detection process. , resulting in false negative results; Q-PCR fluorescent dye detection technology, although low in cost, has a significant disadvantage that its specificity is very susceptible to non-specific gene amplification and primer dimer formation, which makes double-stranded DNA qPCR methods combined with fluorescent dyes have not been able to be effectively applied in clinical detection. However, MGB probe qPCR can effectively solve the non-specific problem of double-stranded DNA-binding fluorescent dye qPCR. MGB probe qPCR has the advantages of strong specificity, high sensitivity, good repeatability, accurate quantification, and fast speed. It can be used in the future. It has become an important tool for molecular diagnosis in clinical detection and microfluidic chip detection.

同时本发明是运用于微流控芯片的HPV病毒检测和分型,微流控芯片操作简便、价格低廉、样品用量少、分析速度快且不依赖昂贵仪器,非常适合于经济不发达地区对疾病的快速检测和分析。该芯片可以扩展到其它任意病原体的快速检测,对于某些急性传染性病原体的基层防控具有十分重要的意义。At the same time, the invention is applied to the HPV virus detection and typing of the microfluidic chip. The microfluidic chip has the advantages of simple operation, low price, low sample consumption, fast analysis speed, and does not depend on expensive instruments, and is very suitable for the treatment of underdeveloped areas. Rapid detection and analysis of disease. The chip can be extended to the rapid detection of any other pathogens, which is of great significance for the grass-roots prevention and control of some acute infectious pathogens.

发明内容SUMMARY OF THE INVENTION

本发明的目的在于提供一种用于检测HPV病毒和分型的微流控芯片,具体涉及一种基于微流控芯片的含高危和低危20种型别HPV病毒检测和分型的方法。采用具有稳定性强、特异性高等特点的MGB探针法,通过保守性高且不易发生丢失的E6、E7区域设计的型特异性引物,结合一种自主研发的可以冻干成粉末包埋于微流控芯片内的Q-PCR引物和探针以及酶预混液,最终实现通过微流控芯片进行检测HPV病毒,操作简单,成本较低,周期短。The purpose of the present invention is to provide a microfluidic chip for detecting and typing HPV viruses, and specifically relates to a method for detecting and typing HPV viruses containing 20 types of high-risk and low-risk types based on a microfluidic chip. The MGB probe method with strong stability and high specificity is adopted, and the type-specific primers designed by the E6 and E7 regions that are highly conservative and less prone to loss, combined with a self-developed lyophilized powder that can be embedded in The Q-PCR primers and probes and the enzyme premix in the microfluidic chip finally realize the detection of HPV virus through the microfluidic chip, with simple operation, low cost and short cycle.

为实现上述目的,本发明采用如下技术方案:To achieve the above object, the present invention adopts the following technical solutions:

一种用于检测HPV病毒和分型的微流控芯片,包含用于检测HPV病毒和分型的特异性引物和探针,所述引物和探针序列具体如下:A microfluidic chip for detecting HPV virus and typing, comprising specific primers and probes for detecting HPV virus and typing, the primers and probe sequences are as follows:

1.HPV16E-F:AGGAGCGACCCAGAAAGTTACC1. HPV16E-F: AGGAGCGACCCAGAAAGTTACC

2.HPV16E-R:ACAGCATATGGATTCCCATCTC2. HPV16E-R: ACAGCATATGGATTCCCATCTC

3.HPV16EFam-F:CAACAGTTACTGCGACG;3. HPV16EFam-F: CAACAGTTACTGCGACG;

4.HPV18E-F: CAACACGGCGACCCTACAAG4. HPV18E-F: CAACACGGCGACCCTACAAG

5.HPV18E-R: TACATTTATGGCATGCAGCATG5. HPV18E-R: TACATTTATGGCATGCAGCATG

6.HPV18EFam-F: CACTTCACTGCAAGACA6. HPV18EFam-F: CACTTCACTGCAAGACA

7.HPV31E-F: GAAAGACCTCGGAAATTGCATG7. HPV31E-F: GAAAGACCTCGGAAATTGCATG

8.HPV31E-R: TGGTGTGTCGTCCCTATATACT8. HPV31E-R: TGGTGTGTCGTCCCTATATACT

9.HPV31EFam-F: CGGCATTGGAAATACCC9. HPV31EFam-F: CGGCATGGAAATACCC

10.HPV33E-F: ATTGCATGATTTGTGCCAAGC10. HPV33E-F: ATTGCATGATTTGTGCCAAGC

11.HPV33E-R: ATTCCAAATGGATTTCCCTCTC11. HPV33E-R: ATTCCAAATGGATTTCCCTCTC

12.HPV33EFam-R: ACATTGAACTACAGTGCG12. HPV33EFam-R: ACATTGAACTACAGTGCG

13.HPV35E-F: CAGCGGAGTGAGGTATATGAC13. HPV35E-F: CAGCGGAGTGAGGTATATGAC

14.HPV35E-R: CTAACGTTTCTCCATACACAC14. HPV35E-R: CTAACGTTTCTCCATACACAC

15.HPV35EFam-F: CATATGGCTGGCCTTC15. HPV35EFam-F: CATATGGCTGGCCTTC

16.HPV39E-F: ATGGCGCGATTTCACAATCCTG16. HPV39E-F: ATGGCGCGATTTCACAATCCTG

17.HPV39E-R: TCGTCTGCAATAGACACAGGCT17. HPV39E-R: TCGTCTGCAATAGACACAGGCT

18.HPV39EFam-F: ACAACGCTGGACACCA18. HPV39EFam-F: ACAACGCTGGACACCA

19.HPV45E-F: TACGAGCAATTAAGCGAGTCAG19. HPV45E-F: TACGAGCAATTAAGCGAGTCAG

20.HPV45E-R: CTGTAAGCTCAATTCTGCCGTC20. HPV45E-R: CTGTAAGCTCAATTCTGCCGTC

21.HPV45EFam-F: AGTCATGCACAACTAC21. HPV45EFam-F: AGTCATGCACAACTAC

22.HPV51E-F: gtacacgacaacgtaacgaaacc22. HPV51E-F: gtacacgacaacgtaacgaaacc

23.HPV51E-R: cgtctttctggtagctggtc23. HPV51E-R: cgtctttctggtagctggtc

24.HPV51EFam-F: TGTAGTATTGCATTTAACACCAC24. HPV51EFam-F: TGTAGTATTGCATTTAACACCAC

25.HPV52E-F: ATGGACAAGCAGAACAAGCCAC25. HPV52E-F: ATGGACAAGCAGAACAAGCCAC

26.HPV52E-R: AACTTGTAATGTGCCCAACAGC26. HPV52E-R: AACTTGTAATGTGCCCAACAGC

27.HPV52EFam-F: ACGGACCTTCGTACTC27. HPV52EFam-F: ACGGACCTTCGTACTC

28.HPV56E-F: AGGTGCTACAGATGTCAAAGT28. HPV56E-F: AGGTGCTACAGATGTCAAAGT

29.HPV56E-R: CTGTAGATTCTCTAGGTTCTC29. HPV56E-R: CTGTAGATTCTCTAGGTTCTC

30.HPV56EFam-F:CTAATAGCACATGGTTG30. HPV56EFam-F: CTAATAGCACATGGTTG

31.HPV58E-F: ATGTGACAGCTCAGACGAGG31. HPV58E-F: ATGTGACAGCTCAGACGAGG

32.HPV58E-R: CGGTTGTTGTACTGTTGATACAC32. HPV58E-R: CGGTTGTTGTACTGTTGATACAC

33.HPV58EFam-F:ATGGACAAGCACAACCG33. HPV58EFam-F: ATGGACAAGCACAACCG

34.HPV59E-F: GAAGTTGACCTTGTGTGCTACG34. HPV59E-F: GAAGTTGACCTTGTGTGCTACG

35.HPV59E-R: ACACAATGTTGTGACGCTGTGG35. HPV59E-R: ACACAATGTTGTGACGCTGTGG

36.HPV59EFam-F:CTCCATCTGGTTCATC36. HPV59EFam-F: CTCCATCTGGTTCATC

37.HPV68E-F: ACAACCCTGAGGAACGGCCAT37. HPV68E-F: ACAACCCTGAGGAACGGCCAT

38.HPV68E-R: GGCAAATTCATATACCTCTGTC38. HPV68E-R: GGCAAATTCATATACCTCTGTC

39.HPV68EFam-R:TCCAATGTCCTGCACA39. HPV68EFam-R: TCCAATGTCCTGCACA

40.HPV26E-F: GAGATAGGAGTCCGTATGCTGC40. HPV26E-F: GAGATAGGAGTCCGTATGCTGC

41.HPV26E-R: GGCATTTGACATCTATGACACC41. HPV26E-R: GGCATTTGACATCTATGACACC

42.HPV26EFam-F:TGCAACATTAGAAGCC42. HPV26EFam-F: TGCAACATTAGAAGCC

43.HPV53E-F: AGTGTATAGAGACGGGTATCCG43. HPV53E-F: AGTGTATAGAGACGGGTATCCG

44.HPV53E-R: GGATGTTGACATCTGTAGCACC44. HPV53E-R: GGATGTTGACATCTGTAGCACC

45.HPV53EFam-R:CCCGTACACTGAACAA45. HPV53EFam-R: CCCGTACACTGAACAA

46.HPV66E-F: ATTCAGCAATACACAGGAACGT46. HPV66E-F: ATTCAGCAATACACAGGAACGT

47.HPV66E-R: TTTAACTCAATACATGCAAACCT47. HPV66E-R: TTTAACTCAATACATGCAAACCT

48.HPV66EFam-F:CTGAGCGAGGTATTAC48. HPV66EFam-F: CTGAGCGAGGTATTAC

49.HPV73E-F: GACAGACAAGCTGAACGAGAG49. HPV73E-F: GACAGACAAGCTGAACGAGAG

50.HPV73E-R: CACTCTTAAATCAGCTTTGTTGC50. HPV73E-R: CACTCTTAAATCAGCTTTGTTGC

51.HPV73EFam-F:ACTGACACTTCGTGCA51. HPV73EFam-F: ACTGACACTTCGTGCA

52.HPV82E-F: GCCTGAAGAAAAGCAAAAGG52. HPV82E-F: GCCTGAAGAAAAGCAAAAGG

53.HPV82E-R: GGTGTTAACTCCAACACTATGTC53. HPV82E-R: GGTGTTAACTCCAACACTATGTC

54.HPV82EFam-R:TTGCACACTGTCCCGTCC54. HPV82EFam-R:TTGCACACTGTCCCGTCC

55.HPV6E-F: GGATATGCAACAACTGTTGAAG55. HPV6E-F: GGATATGCAACAACTGTTGAAG

56.HPV6E-R: CCCTTCCACGTACAATTTAGC56. HPV6E-R: CCCTTCCACGTACAATTTAGC

57.HPV6EFam-F:TACTAACCAAGGCACGGT57. HPV6EFam-F: TACTAACCAAGGCACGGT

58.HPV11E-F: CAGTGCGTGTTTTGCAGGAATG58. HPV11E-F: CAGTGCGTGTTTTGCAGGAATG

59.HPV11E-R: CCCTTGCAGTTCTAAGCAACAG59. HPV11E-R: CCCTTGCAGTTCTAAGCAACAG

60.HPV11EFam-R:AAGTTGTCTCGCCACACA60. HPV11EFam-R:AAGTTGTCTCGCCACACA

61.Globin-F: GGCTCATGGCAAGAAAGTGC61. Globin-F: GGCTCATGGCAAGAAAGTGC

62.Globin-R: CAAGCGTCCCATAGACTCACC62. Globin-R: CAAGCGTCCCATAGACTCACC

63.Globin-Hex-BHQ1-F: TGGCCTGGCTCACCTGGACAACCTC。63. Globin-Hex-BHQ1-F: TGGCCTGGCTCACCTGGACAACCTC.

所述的微流控芯片,包括包埋于微流控芯片内的Q-PCR反应液,所述反应液为:上述HPV-F 0.3mMol/ml,HPV-R 0.3mMol/ml,HPV探针0.25µMol/ml,Globin-F 0.25µMol/ml,Globin-R 0.25µMol/ml,Globin-Hex-BHQ1-F 0.2µMol/ml,DNA聚合酶2000U/ml,10X Tris-HCL反应缓冲液1X,DNA Sample ≥104拷贝数/反应,ddH2O补足至3uL。The microfluidic chip includes a Q-PCR reaction solution embedded in the microfluidic chip, and the reaction solution is: the above-mentioned HPV-F 0.3 mMol/ml, HPV-R 0.3 mMol/ml, HPV probe 0.25µMol/ml, Globin-F 0.25µMol/ml, Globin-R 0.25µMol/ml, Globin-Hex-BHQ1-F 0.2µMol/ml, DNA polymerase 2000U/ml, 10X Tris-HCL reaction buffer 1X, DNA Sample ≥10 4 copies/reaction, ddH 2 O made up to 3uL.

一种基于微流控芯片的HPV病毒检测和分型的方法,包括以下方法:A method for HPV virus detection and typing based on a microfluidic chip, comprising the following methods:

A、检测型别的选择和确定;B、HPV病毒E6和E7区域的引物设计;C、MGB探针的选择和设计;D、可冻干成粉末包埋于微流控芯片内的Q-PCR引物和探针以及酶预混液的自主研发;E、检测体积的摸索和确定;F、检测条件的设计和优化。A. Selection and determination of detection type; B. Design of primers for HPV virus E6 and E7 regions; C. Selection and design of MGB probes; Independent research and development of PCR primers, probes and enzyme master mixes; E. Exploration and determination of detection volume; F. Design and optimization of detection conditions.

具体包括以下方法:Specifically, the following methods are included:

(1)检测型别的选择和确定:本方法检测型别涵盖了12种一类致癌物型别(HPV16, 18,31, 33, 35, 39, 45, 51, 52, 56, 58, 59),同时还能区别其他8种重要型别(HPV6, 11,26, 53, 66, 68, 73, 82)。通量大,检测全面;(1) Selection and determination of detection types: The detection types of this method cover 12 types of carcinogens (HPV16, 18, 31, 33, 35, 39, 45, 51, 52, 56, 58, 59) ), and can also distinguish other 8 important types (HPV6, 11, 26, 53, 66, 68, 73, 82). Large flux, comprehensive detection;

(2)HPV病毒E6和E7区域的序列分析和引物设计:本方法采用E6和E7区域靶向检测,避免高危型HPV整合过程中常丧失L1区导致假阴性,出现误诊和漏诊问题。通过所有检测型别之间的多重比对,设计出型别特异引物,有效避免了交叉污染问题;(2) Sequence analysis and primer design of E6 and E7 regions of HPV virus: This method adopts targeted detection of E6 and E7 regions to avoid the frequent loss of L1 region during the integration of high-risk HPV, resulting in false negatives, misdiagnosis and missed diagnosis. Type-specific primers are designed through multiple alignments between all detection types, which effectively avoids the problem of cross-contamination;

(3)MGB探针的选择和设计:本发明通过MGB探针法检测HPV病毒,大大提高了检测特异性。通过所有检测型别之间的多重比对,设计出型别特异探针,有效避免了交叉污染问题;(3) Selection and design of MGB probe: The present invention detects HPV virus by the MGB probe method, which greatly improves the detection specificity. Type-specific probes are designed through multiple alignments between all detection types, effectively avoiding the problem of cross-contamination;

(4)可冻干成粉末包埋于微流控芯片内的Q-PCR引物和探针以及酶预混液的自主研发:本发明所用Q-PCR反应液可冻干,解决了引物探针和反应缓冲液一起包埋的问题,使得后续检测便捷、高效;(4) Independent research and development of Q-PCR primers and probes and enzyme premixes that can be lyophilized into powder and embedded in microfluidic chips: The Q-PCR reaction solution used in the present invention can be lyophilized, which solves the problem of primer probes and primers. The problem that the reaction buffer is embedded together makes the subsequent detection convenient and efficient;

(5)检测体积的摸索和确定:采用3ul检测体系,大大降低试剂成本;(5) Exploration and determination of detection volume: 3ul detection system is adopted, which greatly reduces the cost of reagents;

(6)检测条件的设计和优化:本发明中引物、探针和反应液等预先包埋到芯片内,使得检测和分型只需要一步添加预先混合好的宫颈脱落细胞基因组和DNA聚合酶即可。芯片中每个反应室之间设置有单向阀,使得PCR反应相互独立,避免交叉污染。(6) Design and optimization of detection conditions: In the present invention, primers, probes and reaction solutions are pre-embedded in the chip, so that detection and typing only need to add pre-mixed cervical exfoliated cell genome and DNA polymerase in one step. Can. A one-way valve is arranged between each reaction chamber in the chip, so that the PCR reactions are independent of each other and cross-contamination is avoided.

本发明通过MGB探针法检测HPV病毒,解决了荧光染料qPCR 法,非特异性问题,同时依靠微流控芯片来降低HPV检测的成本。The invention detects the HPV virus by the MGB probe method, solves the non-specific problem of the fluorescent dye qPCR method, and at the same time relies on the microfluidic chip to reduce the cost of HPV detection.

本发明所设计的引物和探针是通过生物信息学分析各型HPV序列,利用生物软件(snapGene、DNAman、Vector NTI)在HPV病毒基因E6E7区域设计各型别的特异引物,所设计的引物和探针特异性高。由于一般通用PCR引物是针对 HPV L1区进行扩增,但在高危型HPV整合过程中常丧失L1区,所以检测极容易出现假阴性,出现误诊和漏诊。The primers and probes designed in the present invention analyze various types of HPV sequences through bioinformatics, and use biological software (snapGene, DNAman, Vector NTI) to design specific primers for each type in the E6E7 region of the HPV virus gene, and the designed primers and Probe specificity is high. Because general-purpose PCR primers are used to amplify the HPV L1 region, but the L1 region is often lost during the integration of high-risk HPV, the detection is very prone to false negatives, misdiagnosis and missed diagnosis.

本发明还运用一种自主研发的可以冻干成粉末包埋于微流控芯片内的Q-PCR引物和探针以及酶预混液。在市面上暂时还没有可以冻干的PCR反应液,本发明解决了微流控芯片对HPV病毒分型时引物和探针的包埋问题。The invention also uses a self-developed Q-PCR primer, probe and enzyme premix that can be freeze-dried into powder and embedded in a microfluidic chip. There is no lyophilized PCR reaction solution on the market for the time being, and the invention solves the problem of embedding primers and probes when the microfluidic chip is used for HPV virus typing.

通常HPV的Q-PCR分子检测所需要的检测体积为25ul,而在微流控芯片上却可以做到3ul检测体系,极大程度上减少了检测成本。同时传统的HPV分子检测分型,同一个样本需要单独做多个PCR反应,人工、耗时、耗材和所需要的设备都较多,而微流控芯片却能一次性完成样本检测,成功的解决了这类问题,改变传统检测的局限性。Usually the detection volume required for HPV Q-PCR molecular detection is 25ul, but a 3ul detection system can be achieved on the microfluidic chip, which greatly reduces the detection cost. At the same time, in the traditional HPV molecular detection and typing, the same sample needs to do multiple PCR reactions separately, which is labor-intensive, time-consuming, consumables, and required equipment, while the microfluidic chip can complete the sample detection at one time. It solves such problems and changes the limitations of traditional detection.

本发明中引物、探针和反应液等预先包埋到芯片内,使得检测和分型只需要一步添加预先混合好的宫颈脱落细胞基因组和DNA聚合酶即可。芯片中每个反应室之间设置有单向阀,使得PCR反应相互独立,避免交叉污染。In the present invention, primers, probes, reaction solution, etc. are pre-embedded in the chip, so that detection and typing only need to add pre-mixed cervical exfoliated cell genome and DNA polymerase in one step. A one-way valve is arranged between each reaction chamber in the chip, so that the PCR reactions are independent of each other and cross-contamination is avoided.

本发明中宫颈脱落细胞基因组液进入微流控芯片Q-PCR反应室内是依靠向后拉伸的活塞,不需要预先处理成真空或形成负压,使用活塞拉伸可以避免真空或者负压漏压,或者负压不足导致宫颈脱落细胞基因组液不能进入Q-PCR室的情况。In the present invention, the genomic fluid of cervical exfoliated cells enters the Q-PCR reaction chamber of the microfluidic chip by means of a piston that is stretched backwards, and does not need to be pre-processed into vacuum or negative pressure, and the use of piston stretching can avoid vacuum or negative pressure leakage pressure , or insufficient negative pressure to prevent cervical exfoliated cell genomic fluid from entering the Q-PCR chamber.

本发明的优点在于:The advantages of the present invention are:

1.本发明HPV检测和分型所用引物和探针特异性和灵敏高,重复性好。1. The primers and probes used in the HPV detection and typing of the present invention have high specificity and sensitivity and good repeatability.

2.本发明依靠微流控芯片进行检测HPV病毒,操作简单,成本较低,周期短。2. The present invention relies on a microfluidic chip to detect HPV virus, with simple operation, low cost and short cycle.

3.本发明对HPV分型涉及到高危和低危共计20个型号,通量大,检测全面。3. The HPV typing of the present invention involves a total of 20 types of high-risk and low-risk types, with large throughput and comprehensive detection.

4.本发明所用Q-PCR反应液可冻干,决解了引物探针和反应缓冲液一起包埋的问题,使得后续检测便捷、高效。4. The Q-PCR reaction solution used in the present invention can be freeze-dried, which solves the problem that the primer probe and the reaction buffer are embedded together, and makes subsequent detection convenient and efficient.

附图说明Description of drawings

图1 HPV16与Globin内参引物和探针特异性荧光定量PCR结果图。Figure 1 The results of HPV16 and Globin internal reference primers and probe-specific fluorescence quantitative PCR.

图2 HPV18与Globin内参引物和探针特异性荧光定量PCR结果图。Figure 2 The results of HPV18 and Globin internal reference primers and probe-specific fluorescence quantitative PCR.

图3 HPV31与Globin内参引物和探针特异性荧光定量PCR结果图。Figure 3. The results of HPV31 and Globin internal reference primers and probe-specific fluorescence quantitative PCR.

图4 HPV33与Globin内参引物和探针特异性荧光定量PCR结果图。Figure 4 The results of HPV33 and Globin internal reference primers and probe-specific fluorescence quantitative PCR.

图5 HPV35与Globin内参引物和探针特异性荧光定量PCR结果图。Figure 5. The results of HPV35 and Globin internal reference primers and probe-specific fluorescence quantitative PCR.

图6 HPV39与Globin内参引物和探针特异性荧光定量PCR结果图。Fig. 6 The results of HPV39 and Globin internal reference primers and probe-specific fluorescence quantitative PCR.

图7 HPV45与Globin内参引物和探针特异性荧光定量PCR结果图。Figure 7 The results of HPV45 and Globin internal reference primers and probe-specific fluorescence quantitative PCR.

图8 HPV51与Globin内参引物和探针特异性荧光定量PCR结果图。Figure 8. The results of HPV51 and Globin internal reference primers and probe-specific fluorescence quantitative PCR.

图9 HP52与Globin内参引物和探针特异性荧光定量PCR结果图。Figure 9 Results of HP52 and Globin internal reference primers and probe-specific fluorescence quantitative PCR.

图10 HPV56与Globin内参引物和探针特异性荧光定量PCR结果图。Fig. 10 The results of HPV56 and Globin internal reference primers and probe-specific fluorescence quantitative PCR.

图11 HPV58与Globin内参引物和探针特异性荧光定量PCR结果图。Figure 11 Result of HPV58 and Globin internal reference primers and probe-specific fluorescence quantitative PCR.

图12 HPV59与Globin内参引物和探针特异性荧光定量PCR结果图。Figure 12 Result of HPV59 and Globin internal reference primers and probe-specific fluorescence quantitative PCR.

图13 HPV6与Globin内参引物和探针特异性荧光定量PCR结果图。Figure 13 Result of HPV6 and Globin internal reference primers and probe-specific fluorescence quantitative PCR.

图14 HPV11与Globin内参引物和探针特异性荧光定量PCR结果图。Figure 14 Result of HPV11 and Globin internal reference primers and probe-specific fluorescence quantitative PCR.

图15 HPV26与Globin内参引物和探针特异性荧光定量PCR结果图。Figure 15 Result of HPV26 and Globin internal reference primers and probe-specific fluorescence quantitative PCR.

图16 HPV53与Globin内参引物和探针特异性荧光定量PCR结果图。Figure 16 Result of HPV53 and Globin internal reference primers and probe-specific fluorescence quantitative PCR.

图17 HPV66与Globin内参引物和探针特异性荧光定量PCR结果图。Figure 17 The results of HPV66 and Globin internal reference primers and probe-specific fluorescence quantitative PCR.

图18 HPV68与Globin内参引物和探针特异性荧光定量PCR结果图。Figure 18 Result of HPV68 and Globin internal reference primers and probe-specific fluorescence quantitative PCR.

图19 HPV73与Globin内参引物和探针特异性荧光定量PCR结果图。Figure 19 HPV73 and Globin internal reference primers and probe-specific fluorescence quantitative PCR results.

图20 HPV82与Globin内参引物和探针特异性荧光定量PCR结果图。Figure 20 Result of HPV82 and Globin internal reference primers and probe-specific fluorescence quantitative PCR.

图21 HPV16引物和探针检测灵敏度验证。Figure 21 Validation of the detection sensitivity of HPV16 primers and probes.

图22 HPV18引物和探针检测灵敏度验证。Figure 22 Validation of the detection sensitivity of HPV18 primers and probes.

图23 HPV16引物和探针特异性交叉验证结果图。Figure 23 HPV16 primer and probe-specific cross-validation results.

图24 HPV18引物和探针特异性交叉验证结果图。Figure 24 HPV18 primer and probe-specific cross-validation results.

图25微流控芯片俯视图。1.进样孔;2.进样孔单向阀;3.微流管道;4.微流管道单向阀;5.Q-PCR反应室;6.注射筒;7.体积刻度;8.注射活塞;9.拉伸臂;10.拉伸臂方向图标;11.进样孔盖;P.阳性对照反应区;S.实验组反应区。Figure 25 is a top view of the microfluidic chip. 1. Injection hole; 2. Injection hole one-way valve; 3. Microfluidic pipeline; 4. Microfluidic pipeline one-way valve; 5. Q-PCR reaction chamber; 6. Syringe; 7. Volume scale; 8. injection piston; 9. stretching arm; 10. stretching arm direction icon; 11. injection hole cover; P. positive control reaction area; S. experimental group reaction area.

图26微流控芯片侧视图。1.进样孔;2.进样孔单向阀;3.微流管道;4.微流管道单向阀;5.Q-PCR反应室;6.注射筒;7.体积刻度;8.注射活塞;9.拉伸臂;10.拉伸臂方向图标;11.进样孔盖;P.阳性对照反应区;S.实验组反应区。Figure 26. Side view of the microfluidic chip. 1. Injection hole; 2. Injection hole one-way valve; 3. Microfluidic pipeline; 4. Microfluidic pipeline one-way valve; 5. Q-PCR reaction chamber; 6. Syringe; 7. Volume scale; 8. injection piston; 9. stretching arm; 10. stretching arm direction icon; 11. injection hole cover; P. positive control reaction area; S. experimental group reaction area.

具体实施方式Detailed ways

实施例1Example 1

1.引物和探针序列如序列表所示。1. The primer and probe sequences are shown in the sequence table.

体系和组分浓度:System and component concentrations:

Figure DEST_PATH_IMAGE001
Figure DEST_PATH_IMAGE001

3.10X Tris-HCL反应缓冲液组分浓度:3. 10X Tris-HCl reaction buffer component concentration:

Figure 662731DEST_PATH_IMAGE002
Figure 662731DEST_PATH_IMAGE002

4.Q-PCR 反应条件: 1. 94℃,3min;2. 94 ℃,5s;3. 60 ℃,30s;4. Plate Read;5.go to 2, 45 Cycle。4. Q-PCR reaction conditions: 1. 94°C, 3min; 2. 94°C, 5s; 3. 60°C, 30s; 4. Plate Read; 5. go to 2, 45 Cycle.

检测结果:1.HPV检测结果和阳性判定:Test results: 1. HPV test results and positive judgment:

(1) 质控标准 ① 阳性对照的测定结果为阳性,且Ct≤35 .00。 ② 阴性对照的测定结果为阴性,Ct无数值或Ct≥39 .00。 ③ 扩增曲线应有明显的指数期;基线和指数期应有明显清晰的拐点。 ④ 应同时满足上述3项条件,否则试验无效。(1) Quality control standard ① The determination result of the positive control is positive, and Ct≤35.00. ② The determination result of the negative control is negative, Ct has no value or Ct≥39.00. ③ The amplification curve should have a distinct exponential phase; the baseline and exponential phase should have distinct inflection points. ④ The above three conditions should be met at the same time, otherwise the test will be invalid.

(2) 结果判断 ① Ct无数值或Ct≥39 .00的标本为阴性。 ② Ct<35 .00,但扩增曲线无明显的指数期或基线和指数期无明显清晰拐点的标本为阴性。 ③ Ct≤35 .00,且扩增曲线有明显的指数期,基线和指数期有明显清晰拐点的标本为阳性。④ 35 .00<Ct<39 .00的标本重复测试,复测结果Ct<39 .00为阳性,否则均为阴性。(2) Judgment of results ① Specimens with no Ct value or Ct≥39.00 are negative. ② Specimens with Ct<35.00 but no obvious exponential phase of the amplification curve or no clear inflection point between the baseline and exponential phase are negative. ③ Ct≤35.00, and the amplification curve has an obvious exponential phase, and the specimens with a clear inflection point in the baseline and exponential phase are positive. ④ The specimens with 35.00<Ct<39.00 were tested again, and the retest results were positive if Ct<39.00, otherwise they were all negative.

将中国药品生物制品鉴定所建立的HPV基因分型质控品盘中的20种人乳头瘤病毒DNA质粒(型号分别为HPV16 、HPV18 、HPV31、HPV33 、HPV35、HPV39、HPV45 、HPV51 、HPV52、HPV56 、HPV58 、HPV59、HPV68 、HPV26、HPV53、HPV66、HPV73、HPV82、HPV6、HPV11),按照104Copies/反应的量,内参为人源管家基因Globin,体系为10ul,其中Fam为HPV病毒荧光扩增信号,Hex为内参荧光扩增信号。检测结果中所有的HPV型号均可以检测到标准扩增信号且Ct值均小于35。The 20 human papillomavirus DNA plasmids (types: HPV16, HPV18, HPV31, HPV33, HPV35, HPV39, HPV45, HPV51, HPV52, HPV56) in the HPV genotyping quality control disk established by the China Institute of Pharmaceutical and Biological Products were used. , HPV58, HPV59, HPV68, HPV26, HPV53, HPV66, HPV73, HPV82, HPV6, HPV11), according to the amount of 10 4 Copies/reaction, the internal reference is the human housekeeping gene Globin, the system is 10ul, and Fam is the HPV virus fluorescence amplification signal, Hex is the internal reference fluorescence amplification signal. All HPV types in the test results can detect standard amplification signals and the Ct values are less than 35.

2.HPV分型检测灵敏度验证:2. HPV typing detection sensitivity verification:

将中国药品生物制品鉴定所建立的HPV基因分型质控品盘中的20种人乳头瘤病毒DNA质粒(型号分别为HPV16 、HPV18 、HPV31、HPV33 、HPV35、HPV39、HPV45 、HPV51 、HPV52 、HPV56 、HPV58 、HPV59、HPV68 、HPV26、HPV53、HPV66、HPV73、HPV82、HPV6、HPV11)分别进行稀释,制得若干样品,浓度分别为105 Copies/µL、104 Copies/µL、103 Copies/µL、102Copies/µL、101Copies/µL,为DNA模板,按照检10ul测体系进行分别检测(含内参),结果中在105 Copies/µL、104 Copies/µL中均可以检测出HPV信号和内参信号。所以Q-PCR特异分型检测灵敏度为104 Copies/µL。The 20 human papillomavirus DNA plasmids (types: HPV16, HPV18, HPV31, HPV33, HPV35, HPV39, HPV45, HPV51, HPV52, HPV56) in the HPV genotyping quality control disk established by the China Institute of Pharmaceutical and Biological Products , HPV58, HPV59, HPV68, HPV26, HPV53, HPV66, HPV73, HPV82, HPV6, HPV11) were diluted respectively to prepare several samples with concentrations of 10 5 Copies/µL, 10 4 Copies/µL, 10 3 Copies/µL , 10 2 Copies/µL, 10 1 Copies/µL, which are DNA templates, were detected according to the 10ul detection system (including internal reference), and HPV could be detected in both 10 5 Copies/µL and 10 4 Copies/µL. signal and internal reference signal. Therefore, the detection sensitivity of Q-PCR specific typing was 10 4 Copies/µL.

3. HPV分型检测特异性验证:(交叉验证)3. Validation of HPV typing test specificity: (cross-validation)

将中国药品生物制品鉴定所建立的HPV基因分型质控品盘中的20种人乳头瘤病毒DNA质粒(型号分别为HPV16 、HPV18 、HPV31、HPV33 、HPV35、HPV39、HPV45 、HPV51 、HPV52 、HPV56 、HPV58 、HPV59、HPV68 、HPV26、HPV53、HPV66、HPV73、HPV82、HPV6、HPV11),按照104Copies/反应的量,体系为10ul分别进行20 种HPV引物和探针的交叉验证。结果中全部HPV分型引物和探针交叉验证结果信号均单一且为所对应HPV型号的信号。The 20 human papillomavirus DNA plasmids (types: HPV16, HPV18, HPV31, HPV33, HPV35, HPV39, HPV45, HPV51, HPV52, HPV56) in the HPV genotyping quality control disk established by the China Institute of Pharmaceutical and Biological Products , HPV58, HPV59, HPV68, HPV26, HPV53, HPV66, HPV73, HPV82, HPV6, HPV11), according to the amount of 10 4 Copies/reaction, the system was 10ul to carry out cross-validation of 20 HPV primers and probes respectively. In the results, all HPV typing primers and probe cross-validation results showed that the signal was single and the signal of the corresponding HPV type.

以上所述仅为本发明的较佳实施例,凡依本发明申请专利范围所做的均等变化与修饰,皆应属本发明的涵盖范围。The above descriptions are only preferred embodiments of the present invention, and all equivalent changes and modifications made according to the scope of the patent application of the present invention shall fall within the scope of the present invention.

SEQUENCE LISTINGSEQUENCE LISTING

<110> 福州大学<110> Fuzhou University

西人马大周(萍乡)医疗科技有限公司Western Human Horse Dazhou (Pingxiang) Medical Technology Co., Ltd.

<120> 一种用于检测HPV病毒和分型的微流控芯片<120> A microfluidic chip for detection and typing of HPV virus

<130> 63<130> 63

<160> 63<160> 63

<170> PatentIn version 3.3<170> PatentIn version 3.3

<210> 1<210> 1

<211> 22<211> 22

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 1<400> 1

aggagcgacc cagaaagtta cc 22aggagcgacc cagaaagtta cc 22

<210> 2<210> 2

<211> 22<211> 22

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 2<400> 2

acagcatatg gattcccatc tc 22acagcatatg gattcccatc tc 22

<210> 3<210> 3

<211> 17<211> 17

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 3<400> 3

caacagttac tgcgacg 17caacagttac tgcgacg 17

<210> 4<210> 4

<211> 20<211> 20

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 4<400> 4

caacacggcg accctacaag 20caacacggcg accctacaag 20

<210> 5<210> 5

<211> 22<211> 22

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 5<400> 5

tacatttatg gcatgcagca tg 22tacatttatg gcatgcagca tg 22

<210> 6<210> 6

<211> 17<211> 17

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 6<400> 6

cacttcactg caagaca 17cacttcactg caagaca 17

<210> 7<210> 7

<211> 22<211> 22

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 7<400> 7

gaaagacctc ggaaattgca tg 22gaaagacctc ggaaattgca tg 22

<210> 8<210> 8

<211> 22<211> 22

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 8<400> 8

tggtgtgtcg tccctatata ct 22tggtgtgtcg tccctatata ct 22

<210> 9<210> 9

<211> 17<211> 17

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 9<400> 9

cggcattgga aataccc 17cggcattgga aataccc 17

<210> 10<210> 10

<211> 21<211> 21

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 10<400> 10

attgcatgat ttgtgccaag c 21attgcatgat ttgtgccaag c 21

<210> 11<210> 11

<211> 22<211> 22

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 11<400> 11

attccaaatg gatttccctc tc 22attccaaatg gatttccctc tc 22

<210> 12<210> 12

<211> 18<211> 18

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 12<400> 12

acattgaact acagtgcg 18acattgaact acagtgcg 18

<210> 13<210> 13

<211> 21<211> 21

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 13<400> 13

cagcggagtg aggtatatga c 21cagcggagtg aggtatatga c 21

<210> 14<210> 14

<211> 21<211> 21

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 14<400> 14

ctaacgtttc tccatacaca c 21ctaacgtttc tccatacaca c 21

<210> 15<210> 15

<211> 16<211> 16

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 15<400> 15

catatggctg gccttc 16catatggctg gccttc 16

<210> 16<210> 16

<211> 22<211> 22

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 16<400> 16

atggcgcgat ttcacaatcc tg 22atggcgcgat ttcacaatcc tg 22

<210> 17<210> 17

<211> 22<211> 22

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 17<400> 17

tcgtctgcaa tagacacagg ct 22tcgtctgcaa tagacacagg ct 22

<210> 18<210> 18

<211> 16<211> 16

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 18<400> 18

acaacgctgg acacca 16acaacgctgg acacca 16

<210> 19<210> 19

<211> 22<211> 22

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 19<400> 19

tacgagcaat taagcgagtc ag 22tacgagcaat taagcgagtc ag 22

<210> 20<210> 20

<211> 22<211> 22

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 20<400> 20

ctgtaagctc aattctgccg tc 22ctgtaagctc aattctgccg tc 22

<210> 21<210> 21

<211> 16<211> 16

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 21<400> 21

agtcatgcac aactac 16agtcatgcac aactac 16

<210> 22<210> 22

<211> 23<211> 23

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 22<400> 22

gtacacgaca acgtaacgaa acc 23gtacacgaca acgtaacgaa acc 23

<210> 23<210> 23

<211> 20<211> 20

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 23<400> 23

cgtctttctg gtagctggtc 20cgtctttctg gtagctggtc 20

<210> 24<210> 24

<211> 23<211> 23

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 24<400> 24

tgtagtattg catttaacac cac 23tgtagtattg catttaacac cac 23

<210> 25<210> 25

<211> 22<211> 22

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 25<400> 25

atggacaagc agaacaagcc ac 22atggacaagc agaacaagcc ac 22

<210> 26<210> 26

<211> 22<211> 22

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 26<400> 26

aacttgtaat gtgcccaaca gc 22aacttgtaat gtgcccaaca gc 22

<210> 27<210> 27

<211> 16<211> 16

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 27<400> 27

acggaccttc gtactc 16acggaccttc gtactc 16

<210> 28<210> 28

<211> 21<211> 21

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 28<400> 28

aggtgctaca gatgtcaaag t 21aggtgctaca gatgtcaaag t 21

<210> 29<210> 29

<211> 21<211> 21

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 29<400> 29

ctgtagattc tctaggttct c 21ctgtagattc tctaggttct c 21

<210> 30<210> 30

<211> 17<211> 17

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 30<400> 30

ctaatagcac atggttg 17ctaatagcac atggttg 17

<210> 31<210> 31

<211> 20<211> 20

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 31<400> 31

atgtgacagc tcagacgagg 20atgtgacagc tcagacgagg 20

<210> 32<210> 32

<211> 23<211> 23

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 32<400> 32

cggttgttgt actgttgata cac 23cggttgttgt actgttgata cac 23

<210> 33<210> 33

<211> 17<211> 17

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 33<400> 33

atggacaagc acaaccg 17atggacaagc acaaccg 17

<210> 34<210> 34

<211> 22<211> 22

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 34<400> 34

gaagttgacc ttgtgtgcta cg 22gaagttgacc ttgtgtgcta cg 22

<210> 35<210> 35

<211> 22<211> 22

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 35<400> 35

acacaatgtt gtgacgctgt gg 22acacaatgtt gtgacgctgt gg 22

<210> 36<210> 36

<211> 16<211> 16

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 36<400> 36

ctccatctgg ttcatc 16ctccatctgg ttcatc 16

<210> 37<210> 37

<211> 21<211> 21

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 37<400> 37

acaaccctga ggaacggcca t 21acaaccctga ggaacggcca t 21

<210> 38<210> 38

<211> 22<211> 22

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 38<400> 38

ggcaaattca tatacctctg tc 22ggcaaattca tatacctctg tc 22

<210> 39<210> 39

<211> 16<211> 16

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 39<400> 39

tccaatgtcc tgcaca 16tccaatgtcc tgcaca 16

<210> 40<210> 40

<211> 22<211> 22

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 40<400> 40

gagataggag tccgtatgct gc 22gagataggag tccgtatgct gc 22

<210> 41<210> 41

<211> 22<211> 22

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 41<400> 41

ggcatttgac atctatgaca cc 22ggcatttgac atctatgaca cc 22

<210> 42<210> 42

<211> 16<211> 16

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 42<400> 42

tgcaacatta gaagcc 16tgcaacatta gaagcc 16

<210> 43<210> 43

<211> 22<211> 22

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 43<400> 43

agtgtataga gacgggtatc cg 22agtgtataga gacgggtatc cg 22

<210> 44<210> 44

<211> 22<211> 22

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 44<400> 44

ggatgttgac atctgtagca cc 22ggatgttgac atctgtagca cc 22

<210> 45<210> 45

<211> 16<211> 16

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 45<400> 45

cccgtacact gaacaa 16cccgtacact gaacaa 16

<210> 46<210> 46

<211> 22<211> 22

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 46<400> 46

attcagcaat acacaggaac gt 22attcagcaat acacaggaac gt 22

<210> 47<210> 47

<211> 23<211> 23

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 47<400> 47

tttaactcaa tacatgcaaa cct 23tttaactcaa tacatgcaaa cct 23

<210> 48<210> 48

<211> 16<211> 16

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 48<400> 48

ctgagcgagg tattac 16ctgagcgagg tattac 16

<210> 49<210> 49

<211> 21<211> 21

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 49<400> 49

gacagacaag ctgaacgaga g 21gacagacaag ctgaacgaga g 21

<210> 50<210> 50

<211> 23<211> 23

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 50<400> 50

cactcttaaa tcagctttgt tgc 23cactcttaaa tcagctttgt tgc 23

<210> 51<210> 51

<211> 16<211> 16

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 51<400> 51

actgacactt cgtgca 16actgacactt cgtgca 16

<210> 52<210> 52

<211> 20<211> 20

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 52<400> 52

gcctgaagaa aagcaaaagg 20gcctgaagaa aagcaaaagg 20

<210> 53<210> 53

<211> 23<211> 23

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 53<400> 53

ggtgttaact ccaacactat gtc 23ggtgttaact ccaacactat gtc 23

<210> 54<210> 54

<211> 18<211> 18

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 54<400> 54

ttgcacactg tcccgtcc 18ttgcacactg tcccgtcc 18

<210> 55<210> 55

<211> 22<211> 22

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 55<400> 55

ggatatgcaa caactgttga ag 22ggatatgcaa caactgttga ag 22

<210> 56<210> 56

<211> 21<211> 21

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 56<400> 56

cccttccacg tacaatttag c 21cccttccacg tacaatttag c 21

<210> 57<210> 57

<211> 18<211> 18

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 57<400> 57

tactaaccaa ggcacggt 18tactaaccaa ggcacggt 18

<210> 58<210> 58

<211> 22<211> 22

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 58<400> 58

cagtgcgtgt tttgcaggaa tg 22cagtgcgtgt tttgcaggaa tg 22

<210> 59<210> 59

<211> 22<211> 22

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 59<400> 59

cccttgcagt tctaagcaac ag 22cccttgcagt tctaagcaac ag 22

<210> 60<210> 60

<211> 18<211> 18

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 60<400> 60

aagttgtctc gccacaca 18aagttgtctc gccacaca 18

<210> 61<210> 61

<211> 20<211> 20

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 61<400> 61

ggctcatggc aagaaagtgc 20ggctcatggc aagaaagtgc 20

<210> 62<210> 62

<211> 21<211> 21

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 62<400> 62

caagcgtccc atagactcac c 21caagcgtccc atagactcac c 21

<210> 63<210> 63

<211> 25<211> 25

<212> DNA<212> DNA

<213> 人工序列<213> Artificial sequences

<400> 63<400> 63

tggcctggct cacctggaca acctc 25tggcctggct cacctggaca acctc 25

Claims (3)

1. A HPV virus detection and typing primer and probe based on a microfluidic chip are characterized in that: the primer and probe sequences are specifically as follows:
1).HPV16E-F:AGGAGCGACCCAGAAAGTTACC,
2).HPV16E-R:ACAGCATATGGATTCCCATCTC,
3).HPV16EFam-F:CAACAGTTACTGCGACG;
4).HPV18E-F: CAACACGGCGACCCTACAAG,
5).HPV18E-R: TACATTTATGGCATGCAGCATG,
6).HPV18EFam-F: CACTTCACTGCAAGACA;
7).HPV31E-F: GAAAGACCTCGGAAATTGCATG,
8).HPV31E-R: TGGTGTGTCGTCCCTATATACT,
9).HPV31EFam-F: CGGCATTGGAAATACCC;
10).HPV33E-F: ATTGCATGATTTGTGCCAAGC,
11).HPV33E-R: ATTCCAAATGGATTTCCCTCTC,
12).HPV33EFam-R: ACATTGAACTACAGTGCG;
13).HPV35E-F: CAGCGGAGTGAGGTATATGAC,
14).HPV35E-R: CTAACGTTTCTCCATACACAC,
15).HPV35EFam-F: CATATGGCTGGCCTTC;
16).HPV39E-F: ATGGCGCGATTTCACAATCCTG,
17).HPV39E-R: TCGTCTGCAATAGACACAGGCT,
18).HPV39EFam-F: ACAACGCTGGACACCA;
19).HPV45E-F: TACGAGCAATTAAGCGAGTCAG,
20).HPV45E-R: CTGTAAGCTCAATTCTGCCGTC,
21).HPV45EFam-F: AGTCATGCACAACTAC;
22).HPV51E-F: gtacacgacaacgtaacgaaacc,
23).HPV51E-R: cgtctttctggtagctggtc,
24).HPV51EFam-F: TGTAGTATTGCATTTAACACCAC;
25).HPV52E-F: ATGGACAAGCAGAACAAGCCAC,
26).HPV52E-R: AACTTGTAATGTGCCCAACAGC,
27).HPV52EFam-F: ACGGACCTTCGTACTC;
28).HPV56E-F: AGGTGCTACAGATGTCAAAGT,
29).HPV56E-R: CTGTAGATTCTCTAGGTTCTC,
30).HPV56EFam-F:CTAATAGCACATGGTTG;
31).HPV58E-F: ATGTGACAGCTCAGACGAGG,
32).HPV58E-R: CGGTTGTTGTACTGTTGATACAC,
33).HPV58EFam-F:ATGGACAAGCACAACCG;
34).HPV59E-F: GAAGTTGACCTTGTGTGCTACG,
35).HPV59E-R: ACACAATGTTGTGACGCTGTGG,
36).HPV59EFam-F:CTCCATCTGGTTCATC;
37).HPV68E-F: ACAACCCTGAGGAACGGCCAT,
38).HPV68E-R: GGCAAATTCATATACCTCTGTC,
39).HPV68EFam-R:TCCAATGTCCTGCACA;
40).HPV26E-F: GAGATAGGAGTCCGTATGCTGC,
41).HPV26E-R: GGCATTTGACATCTATGACACC,
42).HPV26EFam-F:TGCAACATTAGAAGCC;
43).HPV53E-F: AGTGTATAGAGACGGGTATCCG,
44).HPV53E-R: GGATGTTGACATCTGTAGCACC,
45).HPV53EFam-R:CCCGTACACTGAACAA;
46).HPV66E-F: ATTCAGCAATACACAGGAACGT,
47).HPV66E-R: TTTAACTCAATACATGCAAACCT,
48).HPV66EFam-F:CTGAGCGAGGTATTAC;
49).HPV73E-F: GACAGACAAGCTGAACGAGAG,
50).HPV73E-R: CACTCTTAAATCAGCTTTGTTGC,
51).HPV73EFam-F:ACTGACACTTCGTGCA;
52).HPV82E-F: GCCTGAAGAAAAGCAAAAGG,
53).HPV82E-R: GGTGTTAACTCCAACACTATGTC,
54).HPV82EFam-R:TTGCACACTGTCCCGTCC;
55).HPV6E-F: GGATATGCAACAACTGTTGAAG,
56).HPV6E-R: CCCTTCCACGTACAATTTAGC,
57).HPV6EFam-F:TACTAACCAAGGCACGGT;
58).HPV11E-F: CAGTGCGTGTTTTGCAGGAATG,
59).HPV11E-R: CCCTTGCAGTTCTAAGCAACAG,
60).HPV11EFam-R:AAGTTGTCTCGCCACACA;
61).Globin-F: GGCTCATGGCAAGAAAGTGC,
62).Globin-R: CAAGCGTCCCATAGACTCACC,
63).Globin-Hex-BHQ1-F: TGGCCTGGCTCACCTGGACAACCTC。
2. a microfluidic chip for detecting HPV virus and typing comprising the primers and probes of claim 1.
3. The microfluidic chip of claim 1, wherein: the device comprises Q-PCR reaction liquid embedded in a microfluidic chip, wherein the reaction liquid is as follows: the primers of claim 1, wherein the primers comprise HPV-F0.3 mMol/ml, HPV-R0.3 mMol/ml, probes 0.25 mMol/ml, Globin-F0.25 mMol/ml, Globin-R0.25 mMol/ml, Globin-Hex-BHQ 1-F0.2 mMol/ml, DNA polymerase 2000U/ml, 10 XTris-HCL reaction buffer 1X, and DNA Sample is more than or equal to 104Copy number/reaction, ddH2O make up to 3 uL.
CN202010786653.2A 2020-08-07 2020-08-07 A microfluidic chip for detection and typing of HPV virus Pending CN111876526A (en)

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Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN107641663A (en) * 2017-07-28 2018-01-30 中国药科大学 For detecting the primer and probe and kit of high-risk human mammilla papillomavirus oncogene E6/E7DNA partings
CN109207639A (en) * 2018-10-22 2019-01-15 南通国际旅行卫生保健门诊部 Respiratory pathogen rapid fluorescence PCR detection kit and its primer combination of probe
US20190232289A1 (en) * 2016-09-23 2019-08-01 ArcherDX, Inc. Fluidic system and related methods
CN110607399A (en) * 2019-09-20 2019-12-24 西人马(厦门)科技有限公司 Primer combination, kit and method for LAMP amplification to detect HPV and typing

Patent Citations (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US20190232289A1 (en) * 2016-09-23 2019-08-01 ArcherDX, Inc. Fluidic system and related methods
CN107641663A (en) * 2017-07-28 2018-01-30 中国药科大学 For detecting the primer and probe and kit of high-risk human mammilla papillomavirus oncogene E6/E7DNA partings
CN109207639A (en) * 2018-10-22 2019-01-15 南通国际旅行卫生保健门诊部 Respiratory pathogen rapid fluorescence PCR detection kit and its primer combination of probe
CN110607399A (en) * 2019-09-20 2019-12-24 西人马(厦门)科技有限公司 Primer combination, kit and method for LAMP amplification to detect HPV and typing

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