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CN110903960B - Preparation method of chip for measuring soil microbial chemotaxis - Google Patents

Preparation method of chip for measuring soil microbial chemotaxis Download PDF

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CN110903960B
CN110903960B CN201911258118.3A CN201911258118A CN110903960B CN 110903960 B CN110903960 B CN 110903960B CN 201911258118 A CN201911258118 A CN 201911258118A CN 110903960 B CN110903960 B CN 110903960B
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chemotaxis
chip
silicon wafer
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CN110903960A (en
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吴金水
葛体达
王东东
祝贞科
魏晓梦
袁红朝
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Abstract

The invention provides a preparation method of a chip for measuring soil microbial chemotaxis, which belongs to the technical field of biochemistry and environment and comprises the following steps: printing a chip containing a micro-cavity, a channel and a mixing area to obtain a photoetching mask; placing photoresist in the center of a silicon wafer, sequentially carrying out glue homogenizing and drying, aligning a photoetching mask with an outer frame of the silicon wafer with the glue homogenized, carrying out ultraviolet exposure to obtain an exposed silicon wafer, drying the exposed silicon wafer, developing by using an organic reagent PEGEMEA, drying and hardening to obtain a male die; mixing the PDMS prepolymer and a curing agent, placing the mixture on a male mold, standing and curing to obtain a PDMS stamp; and (3) carrying out surface hydrophilic modification treatment on the PDMS stamp to obtain a treatment stamp, adding a chemotactic agent into a microcavity of the treatment stamp, and attaching the treatment stamp to a glass slide to obtain the chip for measuring soil microbial chemotaxis. The chip prepared by the invention can be used for in-situ, quantitative and visual determination of soil microorganism chemotaxis.

Description

一种测定土壤微生物趋化性芯片的制备方法A preparation method for measuring soil microbial chemotaxis chip

技术领域technical field

本发明属于生物化学与环境技术领域,尤其涉及一种测定土壤微生物趋化性芯片的制备方法。The invention belongs to the technical field of biochemistry and environment, and in particular relates to a preparation method of a chip for determining the chemotaxis of soil microorganisms.

背景技术Background technique

土壤是地球上最大的生物资源库,特有的孔隙结构承载着数量庞大、多样性极为丰富的微生物群落,在土壤有机质分解和养分释放、能量转移等生物地球化学循环中起着重要作用。土壤中适合微生物生长繁殖的场所都有一定的离子浓度和营养成分,微生物能够感受周围环境中的化学物质,并沿着化学物质的浓度梯度定向运动,这种性质称为趋化性。微生物趋化性是微生物适应环境变化而生存的一种基本属性,能够帮助微生物更好地在外界环境中获得有利于自身的条件,更快地获取到自身所需的碳源或者能源,或是在微生物感受到环境中有害物质的刺激时,远离有害物质,避开环境的不良影响,是微生物在特定环境定居的一个重要生态学因素。营养物、异源污染物和水分条件等的不均匀分布致使土壤中微生物趋化现象普遍存在,趋化性微生物通过利用环境中碳源和氮源进行新陈代谢,不仅参与调节土壤微生物多样性及土壤养分的循环、分布等,并在土壤污染防治及土壤微生物修复等研究中意义重大。Soil is the largest biological resource pool on the earth, and its unique pore structure carries a large number and extremely rich diversity of microbial communities, which play an important role in biogeochemical cycles such as soil organic matter decomposition, nutrient release, and energy transfer. The places suitable for the growth and reproduction of microorganisms in the soil have a certain ion concentration and nutrient content. Microorganisms can sense the chemical substances in the surrounding environment and move directionally along the concentration gradient of the chemical substances. This property is called chemotaxis. Microbial chemotaxis is a basic attribute for microorganisms to adapt to environmental changes and survive. It can help microorganisms to better obtain favorable conditions in the external environment, obtain the carbon sources or energy they need faster, or When microorganisms feel the stimulation of harmful substances in the environment, staying away from harmful substances and avoiding the adverse effects of the environment is an important ecological factor for microorganisms to settle in a specific environment. The uneven distribution of nutrients, heterogeneous pollutants, and water conditions lead to the widespread occurrence of microbial chemotaxis in soil. Chemotaxis microorganisms use carbon and nitrogen sources in the environment for metabolism, not only participating in the regulation of soil microbial diversity and soil The cycle and distribution of nutrients are of great significance in the research of soil pollution prevention and soil microbial remediation.

传统研究微生物趋化性的方法很多,各有其优缺点。毛细管检测法、群板检测法等方法能对微生物进行趋化性定性分析,但不能实现定量检测;游动细胞自动追踪检测法和栓细胞检测法可以对单个细胞的运动进行跟踪观察,为细菌趋化性机理和理论模型的研究提供了方法,但游动细胞自动追踪检测法每次只能追踪一个细胞,且需要高度复杂的数据记录设备,而栓细胞检测法不能对浓度梯度产生反应。这使得利用传统检测方法对细菌趋化性进行定量分析和对细菌运动进行精确表征较难实现。There are many traditional methods for studying microbial chemotaxis, each with its own advantages and disadvantages. Methods such as capillary detection and group plate detection can perform qualitative analysis on the chemotaxis of microorganisms, but cannot achieve quantitative detection; automatic tracking detection of swimming cells and tethered cell detection can track and observe the movement of individual cells, which provide a good basis for bacteria. The study of chemotaxis mechanism and theoretical model provides a method, but the automatic tracking detection method of swimming cells can only track one cell at a time, and requires highly complex data recording equipment, while the plug cell detection method cannot respond to concentration gradients. This makes quantitative analysis of bacterial chemotaxis and accurate characterization of bacterial motility difficult to achieve using traditional detection methods.

微流控芯片是现今出现的较新的检测技术,作为一种微加工和微操作手段,在检测微生物的趋化性时有很大优势。首先,微流控芯片与高水平的自动化操作技术相结合,不仅能够控制微流控芯片通道的构型,还能对内部流体的流动状态进行精确的控制,提供更为精确可控的趋化剂浓度梯度的方法。其次,微流控芯片的微通道尺寸很小,透明度高,便于通过显微镜观察微生物对浓度梯度的响应。通过显微摄像系统和图像分析技术进行细胞计数,可以对微生物数量进行精确地统计,还可以对细菌个体的趋化性响应进行直接观察。总之,这些基于微流控精确可控的化学梯度环境为研究化学信号对微生物动态和功能的影响带来全新的理念,具有更加微观、可控和可视化优势,是传统手段无法比拟的。但是目前的研究主要集中在大肠杆菌、铜绿假单胞杆菌等常见易培养的单一菌株,且更多集中在趋化剂浓度梯度调控,对微生物所处的微环境的其它要素缺少调控,不能反映微生物在真实复杂环境中的行为。因此,构建基于原位、可控可视化的土壤微生物趋化性定量测定平台,对理解土壤微生物空间分布、植物根际微生物热区形成和利用微生物治理环境方面都具有重要意义。Microfluidic chip is a relatively new detection technology emerging today. As a means of micro-processing and micro-operation, it has great advantages in detecting the chemotaxis of microorganisms. First of all, the combination of microfluidic chip and high-level automatic operation technology can not only control the configuration of the microfluidic chip channel, but also precisely control the flow state of the internal fluid, providing more precise and controllable chemotaxis. method of concentration gradient. Secondly, the microchannel size of the microfluidic chip is small and the transparency is high, which is convenient for observing the response of microorganisms to the concentration gradient through a microscope. Cell counting by microscopic camera system and image analysis technology can accurately count the number of microorganisms, and can also directly observe the chemotaxis response of individual bacteria. In short, these precise and controllable chemical gradient environments based on microfluidics bring a new concept to the study of the influence of chemical signals on microbial dynamics and functions. They have more microscopic, controllable and visualized advantages, which are unmatched by traditional methods. However, the current research mainly focuses on common and easy-to-cultivate single strains such as Escherichia coli and Pseudomonas aeruginosa, and more focuses on the regulation of chemoattractant concentration gradients, lack of regulation on other elements of the microenvironment where microorganisms live, and cannot reflect Behavior of microorganisms in real complex environments. Therefore, the construction of an in-situ, controllable visualization-based quantitative assay platform for soil microbial chemotaxis is of great significance for understanding the spatial distribution of soil microorganisms, the formation of microbial hotspots in the rhizosphere of plants, and the use of microorganisms to control the environment.

发明内容Contents of the invention

有鉴于此,本发明的目的在于提供一种测定土壤微生物趋化性芯片的制备方法,能够原位、定量和可视化测定土壤微生物趋化性。In view of this, the object of the present invention is to provide a method for preparing a chip for determining the chemotaxis of soil microorganisms, which can measure the chemotaxis of soil microorganisms in situ, quantitatively and visually.

为了实现上述发明目的,本发明提供了以下技术方案:In order to realize the above-mentioned purpose of the invention, the present invention provides the following technical solutions:

本发明提供了一种测定土壤微生物趋化性芯片的制备方法,包括以下步骤:The invention provides a method for preparing a chip for measuring the chemotaxis of soil microorganisms, comprising the following steps:

1)将含有微腔室、通道和混合区的芯片进行打印,得到光刻掩膜;1) Printing a chip containing microchambers, channels and mixing regions to obtain a photolithography mask;

2)将光刻胶置于硅片中心后依次进行匀胶、第一烘干,得到匀好胶的硅片,将所述步骤1)得到的光刻掩膜与匀好胶的硅片的外边框对准后进行紫外曝光,得到曝光硅片,将所述曝光硅片进行第二烘干后用有机试剂PEGEMEA显影,再烘干坚模,得到阳模;2) Place the photoresist in the center of the silicon wafer and then carry out uniform glue and first drying successively to obtain a silicon wafer with uniform glue. After aligning the outer frame, carry out ultraviolet exposure to obtain an exposed silicon wafer, after the second drying of the exposed silicon wafer, develop with an organic reagent PEGEMEA, and then dry the hard mold to obtain a positive mold;

3)将PDMS预聚体和固化剂混合后,置于步骤2)得到的阳模上,静置后进行固化,得到PDMS印章;3) After mixing the PDMS prepolymer and the curing agent, place it on the positive mold obtained in step 2), and solidify after standing to obtain a PDMS stamp;

4)将所述步骤3)得到的PDMS印章进行表面亲水化改性处理,得到处理印章,将趋化剂加入到处理印章的微腔室后,与载玻片贴合,得到测定土壤微生物趋化性芯片;4) The PDMS stamp obtained in step 3) is subjected to surface hydrophilic modification treatment to obtain a treated stamp, and after adding a chemotactic agent to the microchamber of the treated stamp, it is attached to a glass slide to obtain a soil microbial assay. Chemotaxis chip;

所述载玻片的表面经过亲水化改性处理。The surface of the slide glass is treated with hydrophilic modification.

优选的,所述步骤1)每两个微腔室通过一个通道进行连接,得到连接微腔室,每两个连接微腔室通过一个通道连接一个混合区。Preferably, in the step 1) every two microchambers are connected through a channel to obtain connected microchambers, and every two connected microchambers are connected to a mixing zone through a channel.

优选的,所述微腔室的直径为2mm~3mm;Preferably, the microchamber has a diameter of 2 mm to 3 mm;

所述通道的直径为0.3mm~0.8mm;The diameter of the channel is 0.3 mm to 0.8 mm;

所述混合区的长度为6mm~7mm,所述混合区的宽度为2mm~4mm。The length of the mixing zone is 6mm-7mm, and the width of the mixing zone is 2mm-4mm.

优选的,所述步骤2)光刻胶包括光刻胶SU-8。Preferably, the step 2) photoresist includes photoresist SU-8.

优选的,所述步骤2)匀胶包括:先800rpm~1000rpm处理5s~15s,再1200rpm~1800rpm处理20s~40s。Preferably, the step 2) homogenizing includes: firstly treating at 800rpm-1000rpm for 5s-15s, and then treating at 1200rpm-1800rpm for 20s-40s.

优选的,所述步骤2)第一烘干包括:先60℃~70℃处理10min~20min,再90℃~100℃处理1h~2h。Preferably, the step 2) first drying includes: firstly treating at 60°C-70°C for 10min-20min, and then treating at 90°C-100°C for 1h-2h.

优选的,所述步骤2)紫外照射的时间为6~8s。Preferably, the time of the step 2) ultraviolet irradiation is 6-8s.

优选的,所述步骤2)第二烘干包括:先60℃~70℃处理4min~6min,再90℃~100℃处理40min~50min。Preferably, the step 2) second drying includes: firstly treating at 60°C to 70°C for 4min to 6min, and then treating at 90°C to 100°C for 40min to 50min.

优选的,所述步骤3)PDMS预聚体和固化剂的质量比为10~15:1。Preferably, the mass ratio of the step 3) PDMS prepolymer to curing agent is 10-15:1.

优选的,所述步骤3)静置的时间为15min~25min,所述固化的温度为60℃~70℃,所述固化的时间为2h~4h。Preferably, the standing time of step 3) is 15 minutes to 25 minutes, the curing temperature is 60° C. to 70° C., and the curing time is 2 hours to 4 hours.

本发明提供了一种测定土壤微生物趋化性芯片的制备方法,包括以下步骤:1)将含有微腔室、通道和混合区的芯片进行打印,得到光刻掩膜;2)将光刻胶置于硅片中心后依次进行匀胶、第一烘干,得到匀好胶的硅片,将所述步骤1)得到的光刻掩膜与匀好胶的硅片的外边框对准后进行紫外曝光,得到曝光硅片,将所述曝光硅片进行第二烘干后用有机试剂PEGEMEA显影,再烘干坚模,得到阳模;3)将PDMS预聚体和固化剂混合后,置于步骤2)得到的阳模上,静置后进行固化,得到PDMS印章;4)将所述步骤3)得到的PDMS印章进行表面亲水化改性处理,得到处理印章,将趋化剂加入到处理印章的微腔室后,与载玻片贴合,得到测定土壤微生物趋化性芯片;所述载玻片的表面经过亲水化改性处理。The invention provides a method for preparing a chip for measuring the chemotaxis of soil microorganisms, which comprises the following steps: 1) printing a chip containing a microchamber, a channel and a mixing area to obtain a photolithographic mask; 2) applying the photoresist After being placed in the center of the silicon wafer, perform uniform glue and first drying in sequence to obtain a uniform glue silicon wafer, align the photolithographic mask obtained in step 1) with the outer frame of the uniform glue silicon wafer, and then perform UV exposure to obtain the exposed silicon wafer, after the second drying of the exposed silicon wafer, develop with the organic reagent PEGEMEA, and then dry the hard mold to obtain the male mold; 3) After mixing the PDMS prepolymer and the curing agent, place On the positive mold obtained in step 2), solidify after standing to obtain a PDMS stamp; 4) carry out surface hydrophilic modification treatment on the PDMS stamp obtained in step 3) to obtain a treated stamp, add a chemoattractant After arriving at the microchamber where the seal is processed, it is attached to a glass slide to obtain a chip for measuring the chemotaxis of soil microorganisms; the surface of the slide glass is treated with hydrophilic modification.

采用本发明的制备方法制备得到的土壤微生物趋化性芯片埋入土壤原位检测微生物趋化性,再运用泵推法结合荧光染料染色法检测不同趋化剂腔室微生物量与活性,定量可视化表征土壤原位微生物对不同趋化剂的选择性趋化性。The soil microbial chemotaxis chip prepared by the preparation method of the present invention is embedded in the soil to detect microbial chemotaxis in situ, and then uses the pumping method combined with the fluorescent dye staining method to detect the microbial biomass and activity of different chemotaxis chambers, and quantitative visualization Characterizing the selective chemotaxis of soil in situ microorganisms to different chemoattractants.

附图说明Description of drawings

图1为整个光刻掩膜的示意图;FIG. 1 is a schematic diagram of the entire photolithography mask;

图2为单个PDMS印章的光刻掩膜示意图;Figure 2 is a schematic diagram of a photolithographic mask of a single PDMS stamp;

图3为根际、非根际芯片死菌活菌在不同培养天数时灰度直观情况;Fig. 3 is the visual situation of the gray scale of the dead bacteria and live bacteria of the rhizosphere and non-rhizosphere chips at different culture days;

图4为根际、非根际芯片死菌活菌在不同培养天数时灰度变化趋势情况。Figure 4 shows the gray scale change trend of dead and live bacteria in the rhizosphere and non-rhizosphere chips at different culture days.

具体实施方式Detailed ways

本发明提供了一种测定土壤微生物趋化性芯片的制备方法,包括以下步骤:The invention provides a method for preparing a chip for measuring the chemotaxis of soil microorganisms, comprising the following steps:

1)将含有微腔室、通道和混合区的芯片进行打印,得到光刻掩膜;1) Printing a chip containing microchambers, channels and mixing regions to obtain a photolithographic mask;

2)将光刻胶置于硅片中心后依次进行匀胶、烘干,将所述步骤1)得到的光刻掩膜与匀好胶的硅片的外边框对准后进行紫外曝光,得到曝光硅片,将所述曝光硅片烘干后用有机试剂PEGEMEA显影,再烘干坚模,得到阳模;2) After placing the photoresist in the center of the silicon wafer, carry out homogenization and drying successively, align the photolithography mask obtained in the step 1) with the outer frame of the silicon wafer with the homogenization, and then carry out ultraviolet exposure to obtain Expose the silicon wafer, dry the exposed silicon wafer and develop it with the organic reagent PEGEMEA, then dry the hard mold to obtain the positive mold;

3)将PDMS预聚体和固化剂混合后,置于步骤2)得到的阳模上,静置后进行固化,得到PDMS印章;3) After mixing the PDMS prepolymer and the curing agent, place it on the positive mold obtained in step 2), and solidify after standing to obtain a PDMS stamp;

4)将所述步骤3)得到的PDMS印章进行表面亲水化改性处理,得到处理印章,将趋化剂加入到处理印章的微腔室后,与载玻片贴合,得到测定土壤微生物趋化性芯片;4) The PDMS stamp obtained in step 3) is subjected to surface hydrophilic modification treatment to obtain a treated stamp, and after adding a chemotactic agent to the microchamber of the treated stamp, it is attached to a glass slide to obtain a soil microbial assay. Chemotaxis chip;

所述载玻片的表面经过亲水化改性处理。The surface of the slide glass is treated with hydrophilic modification.

本发明将含有微腔室、通道和混合区的芯片进行打印,得到光刻掩膜。本发明优选使用Auto CAD绘制含有微腔室、通道和混合区的芯片,得到图案,将所述图案送至胶片公司,由胶片公司将图案打印在菲林胶片上,制成特定图案的胶片,即为光刻掩膜。The invention prints the chip containing the microchamber, the channel and the mixing area to obtain a photolithography mask. The present invention preferably uses Auto CAD to draw the chip that contains microchamber, passage and mixing area, obtains pattern, and described pattern is sent to film company, pattern is printed on film by film company, makes the film of specific pattern, namely for photolithography masks.

在本发明中,每两个微腔室优选通过一个通道进行连接,得到连接微腔室,每两个连接微腔室优选通过一个通道连接一个混合区。在本发明中,所述微腔室的直径优选为2mm~3mm,所述微腔室的数量优选为4个,所述微腔室中可放置趋化剂,每个微腔室中趋化剂的放置量优选为2~4μl,所述趋化剂优选含有碳元素的溶液,所述溶液中碳元素的浓度优选为0~12g/L,在本发明中,所述趋化剂的作用是:通过趋化剂在微腔室和通道中的扩散作用,通道口附近的细菌感受到趋化剂的浓度梯度,作出相应的趋化反应,游动进入微腔室,通过微腔室中的细菌进行染色计数,来定量分析细菌的趋化反应。在本发明中,所述通道的直径优选为0.3mm~0.8mm,所述通道的数量优选为2个。在本发明中,所述混合区的长度优选为6mm~7mm,所述混合区的宽度优选为2mm~4mm,所述混合区的数量优选为1个,所述混合区的作用是:使进入土壤微生物趋化性芯片的微生物混匀,按其趋化性选择不同的微腔室。在本发明中,光刻掩膜的灰色区域为透光区域,其余部分不透光。在本发明中,所述光刻掩膜是直径为100mm的圆形菲林胶片。In the present invention, every two microchambers are preferably connected through a channel to obtain connecting microchambers, and every two connecting microchambers are preferably connected to a mixing zone through a channel. In the present invention, the diameter of the microchamber is preferably 2 mm to 3 mm, and the number of the microchamber is preferably 4. Chemotactic agents can be placed in the microchamber, and chemotactic agents can be placed in each microchamber. The placement amount of the chemoattractant is preferably 2 to 4 μl. The chemoattractant preferably contains a solution of carbon, and the concentration of the carbon in the solution is preferably 0 to 12 g/L. In the present invention, the effect of the chemoattractant is Yes: through the diffusion of chemoattractants in the microchamber and channel, the bacteria near the channel mouth feel the concentration gradient of the chemoattractant, make a corresponding chemotactic response, swim into the microchamber, and pass through the microchamber. The bacteria were stained and counted to quantitatively analyze the chemotaxis response of the bacteria. In the present invention, the diameter of the channel is preferably 0.3mm-0.8mm, and the number of the channels is preferably 2. In the present invention, the length of the mixing zone is preferably 6 mm to 7 mm, the width of the mixing zone is preferably 2 mm to 4 mm, the number of the mixing zone is preferably 1, and the function of the mixing zone is: Microorganisms in the soil microbial chemotaxis chip are mixed, and different microchambers are selected according to their chemotaxis. In the present invention, the gray area of the photolithography mask is the light-transmitting area, and the rest are opaque. In the present invention, the photolithographic mask is a circular film film with a diameter of 100mm.

本发明将光刻胶置于硅片中心后依次进行匀胶、第一烘干,得到匀好胶的硅片,将得到的光刻掩膜与匀好胶的硅片的外边框对准后进行紫外曝光,得到曝光硅片,将所述曝光硅片进行第二烘干后用有机试剂PEGEMEA显影,再进行烘干坚模,得到阳模。In the present invention, after the photoresist is placed in the center of the silicon wafer, the glue is uniformed and the first drying is carried out successively to obtain a silicon wafer with a uniform glue, and the obtained photolithography mask is aligned with the outer frame of the silicon wafer with a uniform glue UV exposure is carried out to obtain an exposed silicon wafer, and the exposed silicon wafer is subjected to second drying and then developed with an organic reagent PEGEMEA, and then dried to harden the mold to obtain a positive mold.

在本发明中,所述硅片的直径优选为100mm,厚度优选为0.4mm。在本发明中,所述光刻胶优选包括光刻胶SU-8,本发明对所述光刻胶SU-8的来源没有特殊限定,采用常规市售产品即可,在本发明中,所述光刻胶SU-8的使用量优选为每张硅片使用1~2ml。在本发明中,所述匀胶优选包括:先800rpm~1000rpm处理5s~15s,再1200rpm~1800rpm处理20s~40s,更优选先900rpm处理10s,再1500rpm处理30s。在本发明中,所述第一烘干优选包括:先60℃~70℃处理10min~20min,再90℃~100℃处理1h~2h,更优选先65℃处理15min,再95℃处理2h。在本发明中,第二烘干优选包括:先60℃~70℃处理4min~6min,再90℃~100℃处理40min~50min。在本发明中,所述紫外照射的时间优选为6s~8s。经过紫外照射后,透光区域,紫外线和光刻胶反应固化,不透光区域未固化。在本发明中,所述坚模的条件优选包括:先65℃处理5min再135℃处理2h。In the present invention, the diameter of the silicon wafer is preferably 100 mm, and the thickness is preferably 0.4 mm. In the present invention, the photoresist preferably includes photoresist SU-8. The source of the photoresist SU-8 is not particularly limited in the present invention, and conventional commercially available products can be used. In the present invention, the The usage amount of the photoresist SU-8 is preferably 1-2 ml per silicon wafer. In the present invention, the homogenization preferably includes: firstly treating at 800rpm-1000rpm for 5s-15s, then at 1200rpm-1800rpm for 20s-40s, more preferably first at 900rpm for 10s, then at 1500rpm for 30s. In the present invention, the first drying preferably includes: firstly treating at 60°C-70°C for 10min-20min, then at 90°C-100°C for 1h-2h, more preferably first at 65°C for 15min, then at 95°C for 2h. In the present invention, the second drying preferably includes: firstly treating at 60° C. to 70° C. for 4 minutes to 6 minutes, and then treating at 90° C. to 100° C. for 40 minutes to 50 minutes. In the present invention, the ultraviolet irradiation time is preferably 6s-8s. After ultraviolet irradiation, the light-transmitting area is cured by the reaction of the ultraviolet light and the photoresist, and the opaque area is not cured. In the present invention, the conditions for hardening the mold preferably include: firstly treating at 65° C. for 5 minutes and then treating at 135° C. for 2 hours.

本发明将PDMS预聚体和固化剂混合后,置于得到的阳模上,静置后进行固化,得到PDMS印章。In the present invention, after mixing the PDMS prepolymer and the curing agent, they are placed on the obtained positive mold, and then solidified after standing to obtain the PDMS stamp.

在本发明中,所述阳模优选为已显影坚膜后的硅片。In the present invention, the positive mold is preferably a developed silicon wafer.

在本发明中,所述PDMS预聚体和固化剂的质量比优选为10~15:1,更优选为13:1,本发明对PDMS预聚体和固化剂的来源没有特殊限定,优选购买于产地为中国上海的以禄贸易(上海)有限公司,产品型号为

Figure BDA0002310866880000061
184即可,PDMS预聚体和固化剂为
Figure BDA0002310866880000062
184中的配套产品。在本发明中,所述PDMS预聚体和固化剂的作用是制备PDMS。本发明优选将PDMS预聚体和固化剂在搅拌下混合,采用真空泵将PDMS中的气泡排除后,置于阳模上,厚度优选为4mm~6mm。在本发明中,所述静置的时间优选为15min~25min,更优选为20min;所述固化的温度优选为60℃~70℃,更优选为65℃,所述固化的时间优选为2h~4h,更优选为3h。本发明优选将固化后的阳模按照图2中图形上的边进行切割,得到PDMS印章。在本发明中,所述PDMS印章的长度优选为10mm~13mm,宽度优选为6.5mm~9.5mm,厚度优选为2mm~4mm。In the present invention, the mass ratio of the PDMS prepolymer to the curing agent is preferably 10 to 15:1, more preferably 13:1, and the source of the PDMS prepolymer and the curing agent is not particularly limited in the present invention, preferably purchased Made in Yilu Trading (Shanghai) Co., Ltd., Shanghai, China, the product model is
Figure BDA0002310866880000061
184, the PDMS prepolymer and curing agent are
Figure BDA0002310866880000062
Complementary products in 184. In the present invention, the function of the PDMS prepolymer and curing agent is to prepare PDMS. In the present invention, the PDMS prepolymer and the curing agent are preferably mixed under stirring, and the air bubbles in the PDMS are removed by using a vacuum pump, and then placed on the positive mold, and the thickness is preferably 4mm-6mm. In the present invention, the standing time is preferably 15min to 25min, more preferably 20min; the curing temperature is preferably 60°C to 70°C, more preferably 65°C, and the curing time is preferably 2h to 4h, more preferably 3h. In the present invention, the cured male mold is preferably cut according to the edges on the graph in Figure 2 to obtain the PDMS stamp. In the present invention, the length of the PDMS stamp is preferably 10mm-13mm, the width is preferably 6.5mm-9.5mm, and the thickness is preferably 2mm-4mm.

本发明将得到的PDMS印章进行表面亲水化改性处理,得到处理印章,将趋化剂加入到处理印章的微腔室后,与载玻片贴合,得到测定土壤微生物趋化性芯片;所述载玻片的表面经过亲水化改性处理。In the present invention, the obtained PDMS stamp is subjected to surface hydrophilization modification treatment to obtain the treated stamp, after the chemotactic agent is added to the microchamber of the treated stamp, it is attached to a glass slide to obtain a chip for determining the chemotaxis of soil microorganisms; The surface of the slide glass is treated with hydrophilic modification.

本发明对所述PDMS印章和载玻片进行表面亲水化改性处理的方法没有特殊限定,采用常规方法即可。在本发明中,每个微腔室中趋化剂的放置量优选为2~4μl,所述趋化剂优选含有碳元素的溶液,所述碳元素优选以葡萄糖的形式存在,所述溶液中葡萄糖的浓度优选为0~12g/L,在本发明中,所述趋化剂的作用是:通过趋化剂在微腔室和通道中的扩散作用,通道口附近的细菌感受到趋化剂的浓度梯度,作出相应的趋化反应,游动进入微腔室,通过微腔室中的细菌进行染色计数,来定量分析细菌的趋化反应。在本发明中,经过亲水化改性处理的PDMS印章和载玻片通过硅氧硅键的形成而粘连在一起。在本发明中,所述载玻片的大小优选与PDMS印章相同。In the present invention, the method for surface hydrophilic modification of the PDMS stamp and slide glass is not particularly limited, and conventional methods can be used. In the present invention, the placement amount of the chemoattractant in each microchamber is preferably 2-4 μl, and the chemoattractant preferably contains a solution of carbon element, and the carbon element preferably exists in the form of glucose. The concentration of glucose is preferably 0~12g/L, and in the present invention, the effect of described chemotactic agent is: by the diffusion action of chemotactic agent in microchamber and channel, the bacterium near channel mouth feels chemotactic agent The concentration gradient of the bacteria is used to make corresponding chemotactic reactions, swim into the microchamber, and count the bacteria in the microchamber to quantitatively analyze the chemotactic reactions of the bacteria. In the present invention, the hydrophilized PDMS stamp and the glass slide are bonded together through the formation of silicon-oxygen-silicon bonds. In the present invention, the size of the glass slide is preferably the same as the PDMS stamp.

本发明优选将制备得到的测定土壤微生物趋化性芯片放入土壤中,培养一周后,借助蠕动泵用荧光染料给不同微腔室的微生物进行染色,在显微镜下观察。In the present invention, the prepared chip for measuring the chemotaxis of soil microorganisms is preferably put into the soil, and after culturing for one week, the microorganisms in different microchambers are stained with fluorescent dyes by means of a peristaltic pump, and observed under a microscope.

下面结合实施例对本发明提供的技术方案进行详细的说明,但是不能把它们理解为对本发明保护范围的限定。The technical solutions provided by the present invention will be described in detail below in conjunction with the examples, but they should not be interpreted as limiting the protection scope of the present invention.

实施例1Example 1

土壤微生物趋化性芯片的构建方法包括结构设计、SU-8模板制作、PDMS印章制作及芯片构建。其步骤是:The construction method of the soil microbial chemotaxis chip includes structure design, SU-8 template making, PDMS stamp making and chip construction. The steps are:

A、结构设计:A. Structural design:

采用AutoCAD辅助制图工具设计结构,制作含有微腔室(图1中圆形部分,d=2.6mm)和通道(图1中两个微腔室之间的连接管道,d=0.5mm)的芯片。如图1所示,两通道设置一个入口,微生物从混合区(长×宽:6.5mm×3mm)进入含有趋化剂(每个微腔室各加3μL的0g/L和10g/L的葡萄糖溶液)的微腔室。将设计的结构以PDF格式送至公司进行打印得到光刻掩膜。掩膜中灰色区域为透光区域,而其余部分为不透光区域。Adopt AutoCAD auxiliary drafting tool to design the structure, make the chip that contains microcavity (circle part in Fig. 1, d=2.6mm) and channel (connection pipeline between two microchambers in Fig. 1, d=0.5mm) . As shown in Figure 1, two channels are provided with one inlet, and microorganisms enter the mixture containing chemoattractant (3 μL of 0 g/L and 10 g/L glucose respectively) from the mixing zone (length × width: 6.5 mm × 3 mm). solution) microchambers. Send the designed structure to the company in PDF format for printing to obtain a photolithography mask. The gray area in the mask is the transparent area, while the rest is the opaque area.

B、SU-8模板制作:B. Production of SU-8 template:

将适量光刻胶SU-8滴在清洗干净并烘干的硅片中心,经过900rmin 10s和1500rmin 30s匀胶后,将硅片放在热平板上前烘(65℃烘15min,再95℃烘2h)。将掩膜与已匀胶的硅片的外边框对准,紫外照射6~8秒。透光区域,紫外线和光刻胶反应固化,而不透光区域未固化。将曝光后的硅片置于平板加热器上后烘(65℃烘5min,再95℃烘45min);采用有机试剂PEGMEA将未经紫外曝光的光刻胶溶解掉,然后放在热平板坚模(先65℃烘5min,再135℃烘2h),是为SU-8阳模,保存备用。Drop an appropriate amount of photoresist SU-8 on the center of the cleaned and dried silicon wafer, after 900rmin 10s and 1500rmin 30s, place the silicon wafer on a hot plate and bake it (65°C for 15min, then 95°C 2h). Align the mask with the outer frame of the silicon wafer that has been evenly glued, and irradiate with ultraviolet light for 6-8 seconds. The light-transmitting area is cured by the reaction of ultraviolet rays and photoresist, while the opaque area is not cured. Place the exposed silicon wafer on a flat heater and bake (65°C for 5 minutes, and then 95°C for 45 minutes); use the organic reagent PEGMEA to dissolve the photoresist that has not been exposed to ultraviolet light, and then place it on a hot plate hard mold (First bake at 65°C for 5 minutes, then bake at 135°C for 2 hours). It is the male mold of SU-8, and it is stored for future use.

C、PDMS印章制作:C. PDMS stamp production:

PDMS预聚体和固化剂(

Figure BDA0002310866880000071
184)13:1质量比混合,充分搅拌后,采用真空泵将PDMS中气泡排除后,倒在SU-8阳模上,厚度在.12~.24之间,常温静置20min。然后在65℃下固化3h后取出,将PDMS脱模按照图形上的边切割,即PDMS印章,待用。PDMS prepolymer and curing agent (
Figure BDA0002310866880000071
184) Mix at a mass ratio of 13:1. After fully stirring, use a vacuum pump to remove the air bubbles in PDMS, pour it on the SU-8 male mold with a thickness between .12 and .24, and let it stand at room temperature for 20 minutes. Then take it out after curing at 65°C for 3 hours, remove the PDMS from the mold and cut it according to the edge of the graph, that is, the PDMS stamp, ready for use.

D、芯片构建:D. Chip construction:

采用氧等离子体将干净的载破片和PDMS印章进行表面亲水化改性处理,将趋化剂加入对应微腔室后,将玻片和PDMS贴合,此时,PDMS和玻片会因为硅氧硅键的形成而粘连在一起,芯片制作完成。Use oxygen plasma to modify the surface of the clean slide and PDMS seal to hydrophilize, add the chemoattractant to the corresponding microchamber, and attach the glass slide to the PDMS. At this time, the PDMS and the glass slide will Oxygen-silicon bond formation and adhesion together, the chip is completed.

实施例2Example 2

采用实施例1制备得到的土壤微生物趋化性芯片,进行水稻土根际非根际土壤微生物对碳源的选择性趋向性。Using the soil microbial chemotaxis chip prepared in Example 1, the selective tropism of paddy soil rhizosphere and non-rhizosphere soil microorganisms to carbon sources was carried out.

选取亚热带地区典型水稻田,将制作好的芯片埋入水稻根际和非根际的土壤中,运用泵推法结合死活细胞染色法检测活体微生物数量,探讨根际非根际条件下土壤原位微生物的选择性趋向性。以葡萄糖作为碳源,在微腔室内分别加入灭菌水和10g/L葡萄糖溶液,分别在5d,10d,20d采样,检测芯片不同微腔室内微生物的变化。Select a typical paddy field in the subtropical region, bury the prepared chip in the rice rhizosphere and non-rhizosphere soil, use the pump-push method combined with the dead and alive cell staining method to detect the number of living microorganisms, and explore the soil in situ under the rhizosphere and non-rhizosphere conditions. Selective tropism of microorganisms. Using glucose as a carbon source, sterilized water and 10g/L glucose solution were added to the microchamber, and samples were taken at 5d, 10d, and 20d to detect the changes of microorganisms in different microchambers of the chip.

如图所示,图3为根际、非根际芯片死菌活菌在不同培养天数时灰度直观情况,图4为根际、非根际芯片死菌活菌在不同培养天数时灰度变化趋势情况。以下CK是指:加无菌水溶液的微腔室内的微生物的数量。由图4所得结果可知,培养第5d时,活菌和死菌最大灰度值均为CK-根际处理,最低均为CK-非根际;培养第10d时,活菌和死菌最大灰度值分别为C-根际和CK-非根际,最低值分别为CK-非根际和C-根际;培养第20d时,活菌和死菌最大灰度值分别为CK-根际和C-根际,最低均为C-根际。可能是由于芯片中添加的外源葡萄糖碳浓度与根际碳浓度存在差异,对微生物生长存在抑制作用,在5d时,C处理活菌灰度值低于CK处理;随着培养时间增长,微生物通过自身调整,逐渐适应新的生存环境,外源碳的添加提供了微生物所需营养,繁殖数量大于CK处理,C-根际处理碳提供更充足,因此,在10d时,C处理的活菌灰度值大于CK处理,且C-根际处理死菌灰度值小于C-非根际;在第20d时,由于外源碳的添加有限,碳营养元素的提高小于微生物生长的需求,C-非根际处理营养缺乏更为显著,因此,C处理活菌灰度值小于CK处理,且C-非根际处理死菌灰度值大于C-根际。As shown in the figure, Figure 3 shows the visual gray scale of dead bacteria and live bacteria in the rhizosphere and non-rhizosphere chips at different days of culture, and Figure 4 shows the gray scale of dead and live bacteria in the rhizosphere and non-rhizosphere chips at different days of culture changing trend situation. The following CK refers to: the number of microorganisms in the microchamber with sterile aqueous solution. From the results obtained in Figure 4, it can be seen that on the 5th day of culture, the maximum gray value of live bacteria and dead bacteria is CK-rhizosphere treatment, and the lowest is CK-non-rhizosphere; on the 10th day of culture, the maximum gray value of live bacteria and dead bacteria is The gray values of C-rhizosphere and CK-non-rhizosphere were respectively, and the lowest values were CK-non-rhizosphere and C-rhizosphere respectively; on the 20th day of culture, the maximum gray values of live and dead bacteria were respectively CK-rhizosphere and C-rhizosphere, the lowest is C-rhizosphere. It may be due to the difference between the carbon concentration of exogenous glucose added in the chip and the carbon concentration of the rhizosphere, which inhibited the growth of microorganisms. At 5 days, the gray value of viable bacteria in C treatment was lower than that in CK treatment; with the growth of culture time, the microbial Gradually adapt to the new living environment through self-adjustment, the addition of exogenous carbon provides the nutrients needed by the microorganisms, the reproduction number is greater than that of CK treatment, and the C-rhizosphere treatment provides more sufficient carbon. The gray value of the dead bacteria in the C-rhizosphere treatment was greater than that of the CK treatment, and the gray value of the dead bacteria in the C-rhizosphere treatment was smaller than that of the C-non-rhizosphere treatment; on the 20th day, due to the limited addition of exogenous carbon, the increase of carbon nutrients was less than the demand for microbial growth, and C -Non-rhizosphere treatment has more significant nutrient deficiency, therefore, the gray value of live bacteria in C treatment is smaller than that in CK treatment, and the gray value of dead bacteria in C-non-rhizosphere treatment is greater than that in C-rhizosphere.

Claims (9)

1. A preparation method of a chip for measuring soil microbial chemotaxis is characterized by comprising the following steps:
1) Printing a chip containing a micro-cavity, a channel and a mixing area to obtain a photoetching mask;
2) Placing photoresist in the center of a silicon wafer, sequentially carrying out glue homogenizing and first drying to obtain a silicon wafer with homogenized glue, aligning the photoetching mask obtained in the step 1) with the outer frame of the silicon wafer with homogenized glue, carrying out ultraviolet exposure to obtain an exposed silicon wafer, carrying out second drying on the exposed silicon wafer, developing by using an organic reagent PEGEMEA (positive electrode assembly film), and drying and hardening the mold to obtain a male mold;
3) Mixing the PDMS prepolymer and a curing agent, placing the mixture on the male mold obtained in the step 2), standing and curing to obtain a PDMS stamp;
4) Carrying out surface hydrophilic modification treatment on the PDMS stamp obtained in the step 3) to obtain a treatment stamp, adding a chemotactic agent into a microcavity of the treatment stamp, and attaching the treatment stamp to a glass slide to obtain a chip for measuring soil microbial chemotaxis;
the surface of the glass slide is subjected to hydrophilization modification treatment;
in the step 1), every two micro chambers are connected through one channel to obtain a connecting micro chamber, and every two connecting micro chambers are connected with one mixing region through one channel;
the diameter of the micro chamber is 2 mm-3 mm;
the diameter of the channel is 0.3 mm-0.8 mm;
the length of the mixing zone is 6 mm-7 mm, and the width of the mixing zone is 2 mm-4 mm.
2. The method according to claim 1, wherein the step 2) photoresist comprises a photoresist SU-8.
3. The method of claim 1, wherein the step 2) of homogenizing comprises: firstly processing at 800 rpm-1000 rpm for 5 s-15 s, and then processing at 1200 rpm-1800 rpm for 20 s-40 s.
4. The manufacturing method according to claim 1, wherein the step 2) first drying includes: firstly processing at 60-70 ℃ for 10-20 min, and then processing at 90-100 ℃ for 1-2 h.
5. The method according to claim 1, wherein the time of the ultraviolet irradiation in the step 2) is 6 to 8 seconds.
6. The manufacturing method according to claim 1, wherein the step 2) second drying includes: firstly treating at 60-70 ℃ for 4-6 min, and then treating at 90-100 ℃ for 40-50 min.
7. The preparation method according to claim 1, wherein the mass ratio of the PDMS prepolymer and the curing agent in the step 3) is 10-15.
8. The preparation method of claim 1, wherein the standing time in the step 3) is 15-25 min, the curing temperature is 60-70 ℃, and the curing time is 2-4 h.
9. Use of the chip obtained by the preparation method according to claim 1 for measuring chemotaxis of soil microorganisms, wherein the chemotaxis of soil microorganisms can be measured in situ, quantitatively and visually.
CN201911258118.3A 2019-12-10 2019-12-10 Preparation method of chip for measuring soil microbial chemotaxis Expired - Fee Related CN110903960B (en)

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