CN110343650B - A recombinant Streptomyces tuberculosis producing amphotericin B and its application - Google Patents
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Abstract
本发明公开了一种产两性霉素B的重组结节链霉菌及其应用,所述重组结节链霉菌是敲除结节链霉菌ZJB2016050(Streptomyces nodosus ZJB2016050)内两性霉素B的竞争支路后,再将SEQ ID NO.1、SEQ ID NO.2、SEQ ID NO.3、SEQ ID NO.4、SEQ ID NO.5所示功能基因串联序列导入获得的;通过导入功能基因,使两性霉素B骨架合成前体供给量全面提升,提高菌种对营养物质的利用率,改变目标产物的营养物质流向。通过敲除竞争支路提高AmB产量约20%,副产物两性霉素A降低40%,通过过表达串联功能基因验证提高三类前体乙酰辅酶A,丙二酰辅酶A和甲基丙二酰辅酶A大幅提升两性霉素B的产量,最终在5L发酵罐发酵,两性霉素B产量可达到16g/L。The invention discloses a recombinant Streptomyces tuberculosis amphotericin B producing amphotericin B and an application thereof. The recombinant Streptomyces tuberculosis is a competitive branch of amphotericin B in knockout Streptomyces nodosus ZJB2016050 (Streptomyces nodosus ZJB2016050) Then, introduce the tandem sequences of functional genes shown in SEQ ID NO.1, SEQ ID NO.2, SEQ ID NO.3, SEQ ID NO.4, and SEQ ID NO.5 into the obtained; The supply of the precursors for the synthesis of the skeleton of mycin B is comprehensively increased, the utilization rate of nutrients by the bacteria is improved, and the flow of nutrients of the target products is changed. The production of AmB was increased by about 20% by knocking out the competitive branch, the by-product amphotericin A was decreased by 40%, and the three types of precursors acetyl-CoA, malonyl-CoA and methylmalonyl were increased by overexpression of tandem functional gene validation. Coenzyme A greatly increases the production of amphotericin B, and finally in a 5L fermenter, the production of amphotericin B can reach 16g/L.
Description
(一)技术领域(1) Technical field
本发明涉及一种产两性霉素B的重组结节链霉菌及其应用。The present invention relates to a recombinant Streptomyces tuberculosis producing amphotericin B and its application.
(二)背景技术(2) Background technology
两性霉素B(Amphotericin B,AmB)是一种多烯类广谱抗真菌抗生素,由结节链霉菌(Streptomyces nodosus)产生,其菌株于1955年从委内瑞拉奥里诺科河三角洲的土样中收集分离获得。1966年开始上市,是第一个用于深部真菌感染的药物,已使用近半个世纪。AmB分子式C47H73NO17,AmB属于多稀大环内酯类抗生素,具有广谱性的对真菌抗性,特别是对于具有生命威胁性的全身性真菌感染例如白色念珠菌,曲霉属真菌等,同时还具有有效的抗病毒、寄生虫药性,例如阮病毒、利什曼原虫等,目前市场流通的两性霉素B药物包括注射液,药片等。AmB为黄色或橙黄色粉末,无味,有引湿性,在日光下易破坏失效。能溶解DMSO,在水,无水乙醇,三氯甲烷或乙醚中基本不溶,(pH 6-7)均少于1mg/L。AmB的抗真菌作用机制为:AmB能与真菌细胞膜上的麦角固醇结合,在膜上形成微孔,使膜的通透性发生改变,最终导致重要的细胞内容物K离子、核苷酸、氨基酸等无节制的流失而造成菌体死亡。然而AmB也会在较小程度上与哺乳动物细胞膜上的胆固醇相互作用,造成一定的副作用,特别是肾毒性。虽然其具有一定的副作用,但AmB仍然是目前治疗人类深部全身性真菌感染的最重要一种抗生素。人们加强了对AmB新给药形式的研究,例如在20世纪90年代出现的Abelcet、Ambisome脂质体药物,为了降低毒性,提高药物到达作用区域的效率。也有发酵方向和传统诱变的研究进展,如2017年张博等对野生型结节链霉菌进行诱变,提高了两性霉素B的产量至5.02g/L,在诱变菌种的发酵进行优化,最终实现高产量两性霉素B的工业化。Amphotericin B (AmB) is a polyene broad-spectrum antifungal antibiotic produced by Streptomyces nodosus, a strain of which was isolated from soil samples from the Orinoco delta in Venezuela in 1955. Collect and separate. Launched in 1966, it is the first drug for deep fungal infections and has been used for nearly half a century. The molecular formula of AmB is C 47 H 73 NO 17 , AmB belongs to the polydene macrolide antibiotics, and has broad-spectrum resistance to fungi, especially for life-threatening systemic fungal infections such as Candida albicans, Aspergillus spp. At the same time, it also has effective antiviral and parasitic properties, such as Nguyen virus, Leishmania, etc. The amphotericin B drugs currently circulating in the market include injections, tablets, etc. AmB is yellow or orange-yellow powder, odorless, hygroscopic, and easily damaged in sunlight. Can dissolve DMSO, basically insoluble in water, absolute ethanol, chloroform or ether, (pH 6-7) less than 1mg/L. The antifungal mechanism of AmB is: AmB can combine with ergosterol on the fungal cell membrane to form micropores on the membrane, change the permeability of the membrane, and eventually lead to important cellular contents K ions, nucleotides, The uncontrolled loss of amino acids, etc. causes bacterial death. However, AmB also interacts to a lesser extent with cholesterol on mammalian cell membranes, causing certain side effects, notably nephrotoxicity. Although it has certain side effects, AmB is still the most important antibiotic for the treatment of deep systemic fungal infections in humans. People have strengthened the research on new administration forms of AmB, such as Abelcet and Ambisome liposome drugs that appeared in the 1990s, in order to reduce toxicity and improve the efficiency of drugs reaching the area of action. There are also research progress in fermentation direction and traditional mutagenesis. For example, in 2017, Zhang Bo et al. mutated wild-type Streptomyces tuberculosis, which increased the yield of amphotericin B to 5.02g/L. optimization, and finally realize the industrialization of high-yield amphotericin B.
微生物代谢改造的方式有很多,其中常用的方法有过表达功能基因、敲除竞争支路、异源表达合成基因簇等。功能基因的过表达在菌种代谢改造中是主要的手段之一且见效快。结节链霉菌的主要遗传手段是接合转移,已有参考资料显示结节链霉菌的接合转移的结合率相比模式链霉菌较低,其中类似pSET152,PKC1139等整合型或温敏性质粒的成功率在操作和成功几率更加低。pJTU1278作为表达型质粒是目前本实验室唯一成功进行接合转移的质粒。There are many ways of microbial metabolic modification, among which the commonly used methods include overexpression of functional genes, knockout of competitive branches, and heterologous expression of synthetic gene clusters. The overexpression of functional genes is one of the main methods in the metabolic transformation of strains, and the effect is quick. The main genetic method of Streptomyces tuberculosis is conjugative transfer. Existing reference materials show that the conjugative transfer rate of Streptomyces tuberculosis is lower than that of model Streptomyces. Among them, integration or thermosensitive plasmids such as pSET152 and PKC1139 are successful. The rate of operation and success rate is even lower. As an expression plasmid, pJTU1278 is the only plasmid successfully conjugated and transferred in our laboratory.
两性霉素B骨架主要由18个合成前体和一个起始单元组成,起始单元由聚酮合酶模块amphA结合一个乙酰辅酶A构成,后续由15个丙二酰辅酶A和3个甲基丙二酰辅酶A逐步组成。其中乙酰辅酶A主要来源于葡糖糖的糖酵解路径,丙二酰辅酶A主要由乙酰辅酶A在乙酰辅酶A羧化酶的作用下合成,甲基丙二酰辅酶A合成由两个路径,一条由琥珀酰辅酶A在甲基丙二酰异构酶和变位酶作用下合成,一条由丙酰辅酶A在丙酰辅酶A羧化酶作用下合成。乙酰辅酶A是生物代谢的核心物质,在生物体内代谢支路复杂,是次级代谢产物的主要前体之一。The amphotericin B backbone is mainly composed of 18 synthetic precursors and a starting unit. The starting unit is composed of a polyketide synthase module amphA combined with an acetyl-CoA, followed by 15 malonyl-CoA and 3 methyl groups. Malonyl-CoA stepwise composition. Among them, acetyl-CoA is mainly derived from the glycolysis pathway of glucose, malonyl-CoA is mainly synthesized by acetyl-CoA under the action of acetyl-CoA carboxylase, and methylmalonyl-CoA is synthesized by two pathways , one is synthesized by succinyl-CoA under the action of methylmalonyl isomerase and mutase, and the other is synthesized by propionyl-CoA under the action of propionyl-CoA carboxylase. Acetyl-CoA is the core substance of biological metabolism, and it is one of the main precursors of secondary metabolites in organisms with complex metabolic branches.
链霉菌属是放线菌的一种,被称为次级代谢产物的天然宝库,一种链霉菌往往会带有多个次级代谢产物合成基因簇,有些可能是沉默基因簇,在特定的应激作用下才能实现表达。另一部分可能处于不同的表达状态,也有存在竞争性的作用。在结节链霉菌内存在5种PKS类型合成基因簇,其中两性美素B属于PKS I型。根据antiSMASH的预测结果及KEGG数据推论,发现PKS5的次级代谢产物可能会对两性美素B的合成具有竞争作用。Streptomyces is a kind of actinomycetes, known as a natural treasure trove of secondary metabolites. A Streptomyces species often has multiple secondary metabolite synthesis gene clusters, some of which may be silent gene clusters. Expression can only be achieved under the action of stress. Another part may be in a different expression state, and there is also a competitive role. There are five PKS type synthetic gene clusters in Streptomyces tuberculosis, among which amphotericin B belongs to PKS I type. According to the prediction results of antiSMASH and the inference of KEGG data, it was found that the secondary metabolites of PKS5 may have a competitive effect on the synthesis of amphotericin B.
(三)发明内容(3) Contents of the invention
本发明目的是提供产两性霉素B(AmB)的重组结节链霉菌及其应用,通过在结节链霉菌中表达功能基因,提高结节链霉菌内前体物质的量或提高对前体物质的利用率,有效提升AmB的产量。The object of the present invention is to provide amphotericin B (AmB)-producing recombinant Streptomyces tuberculosis and its application. By expressing functional genes in Streptomyces tuberculosis, the amount of precursor substances in Streptomyces tuberculosis can be increased or the amount of The utilization rate of the material can effectively improve the production of AmB.
本发明采用的技术方案是:The technical scheme adopted in the present invention is:
一种产两性霉素B的重组结节链霉菌,由结节链霉菌ZJB2016050(Streptomycesnodosus ZJB2016050)(即CCTCC NO:M 2017426)基因敲除SEQ ID NO.6所示的PKS5基因簇后,再导入SEQ ID NO.1所示乙酰辅酶A羧化酶1基因、SEQ ID NO.2所示乙酰辅酶A羧化酶2基因、SEQ ID NO.3所示聚酮合酶PKSamphA基因、SEQ ID NO.4所示甲基丙二酰辅酶A变位酶基因和SEQ ID NO.5所示甲基丙二酰辅酶A异构酶基因的串联基因获得。A recombinant Streptomyces tuberculosis producing amphotericin B, after knocking out the PKS5 gene cluster shown in SEQ ID NO. Acetyl-CoA carboxylase 1 gene shown in SEQ ID NO.1, acetyl-CoA
优选的,所述重组结节链霉菌为结节链霉菌ZJB2016050-RAAAmm(Streptomycesnodosus ZJB2016050-RAAAmm),保藏于中国典型培养物保藏中心,地址:中国武汉武汉大学,邮编430072,保藏编号:CCTCC NO:M 2019341,保藏日期2019年05月09日。Preferably, the recombinant Streptomyces tuberculosis is Streptomyces tuberculosis ZJB2016050-RAAAmm (Streptomycesnodosus ZJB2016050-RAAAmm), which is preserved in China Center for Type Culture Collection, address: Wuhan University, Wuhan, China, zip code 430072, deposit number: CCTCC NO: M 2019341, deposited on May 9, 2019.
本发明所述重组载体导入宿主菌方法为种属间接合转移方法,方法可如下:The method for introducing the recombinant vector of the present invention into the host bacteria is a method for conjugation transfer between species, and the method can be as follows:
敲除步骤:Knockout steps:
1)通过PCR扩增敲除基因两边的同源臂片段(每个3000bp),插入pJTU1278载体质粒多克隆位点处,得到复原载体pJTU1278-RE;1) Amplify the homology arm fragments (3000bp each) on both sides of the knockout gene by PCR, insert into the pJTU1278 vector plasmid multi-cloning site, and obtain the recovery vector pJTU1278-RE;
2)克隆卡纳抗性基因插入pJTU1278-Re两个同源臂之间,作为敲除筛选标记,得到复原载体pJTU1278-DE。2) The kana resistance gene was cloned and inserted between the two homology arms of pJTU1278-Re as a knockout selection marker to obtain a recovery vector pJTU1278-DE.
过表达步骤:Overexpression steps:
1)将PCR克隆获得的乙酰辅酶A羧化酶1基因(acc1)及启动子插入pJTU1278载体质粒多克隆位点处,得到重组载体pJTU1278-acc1;1) Insert the acetyl-CoA carboxylase 1 gene (acc1) and promoter obtained by PCR cloning into the multi-cloning site of the pJTU1278 vector plasmid to obtain the recombinant vector pJTU1278-acc1;
2)将步骤1)中得到的重组载体转化入大肠杆菌JM109,对得到的转化子进行测序,将确认无误的载体导入供体菌大肠杆菌ET12567/pUZ8002;2) Transform the recombinant vector obtained in step 1) into Escherichia coli JM109, sequence the obtained transformant, and introduce the confirmed vector into the donor bacteria Escherichia coli ET12567/pUZ8002;
3)将步骤1)、2)所述依次在构建完的质粒上插入乙酰辅酶A羧化酶2基因(acc2),聚酮合酶PKSamphA,甲基丙二酰辅酶A变位酶(mcm),甲基丙二酰辅酶A异构酶(mme)。最终得到质粒pJTU1278-acc1-acc2-amphA-mcm-mme。3) Insert the acetyl-
4)将步骤3)中得到的含有重组载体的供体菌大肠杆菌ET12567/pUZ8002/pJTU1278-acc1-acc2-amphA-mcm-mme,通过接合转移方法将表达载体转化到受体菌(即CCTCC NO:M 2017426)中,得到高产两性霉素B的基因工程菌。4) The donor bacteria Escherichia coli ET12567/pUZ8002/pJTU1278-acc1-acc2-amphA-mcm-mme containing the recombinant vector obtained in step 3) was transformed into the recipient bacteria (i.e. CCTCC NO. : M 2017426), a genetically engineered bacterium with high amphotericin B production was obtained.
本发明还涉及所述的重组结节链霉菌在微生物发酵制备两性霉素B中的应用。The invention also relates to the application of the recombinant Streptomyces tuberculosis in the preparation of amphotericin B by microbial fermentation.
具体的,所述应用为:将所述产两性霉素B的重组结节链霉菌接种至发酵培养基,25~30℃、200~500rpm发酵培养,获得含两性霉素B的发酵液,将发酵液分离纯化,得到所述两性霉素B;所述发酵培养基终浓度组成为:葡萄糖60~80g/L,牛肉膏5~10g/L,大豆蛋白粉5~10g/L,棉子粉8~12g/L,CaCO3 5~10g/L,KH2PO4 0.1~0.4g/L,溶剂为水,pH 7.0。Specifically, the application is as follows: inoculating the amphotericin B-producing recombinant Streptomyces tuberculosis into a fermentation medium, fermenting and culturing at 25-30° C. and 200-500 rpm to obtain a fermentation broth containing amphotericin B, The fermentation broth is separated and purified to obtain the amphotericin B; the final concentration of the fermentation medium is composed of: glucose 60-80 g/L, beef extract 5-10 g/L, soybean protein powder 5-10 g/L,
所述发酵培养通常在发酵罐中进行,发酵罐压力0.05MPa,通气比0.08~1.5vvm。The fermentation culture is usually carried out in a fermentor with a pressure of 0.05MPa and an aeration ratio of 0.08-1.5vvm.
优选的,所述产两性霉素B的重组结节链霉菌在发酵培养前先进行种子培养,再将种子液以体积浓度2~10%的接种量接种至发酵培养基,所述种子培养为:将产两性霉素B的重组结节链霉菌接种至GYM平板,28℃培养7天,取颜色发灰黑色的孢子,使用棉花棒将表面孢子洗脱至无菌水中,将洗下的孢子悬液用含有棉花的注射器过滤,12000rpm离心5min后去上清液,沉淀加入无菌水重悬后,12000rpm离心5min重新洗脱一次,用无菌水重悬作为孢子悬液,将孢子悬液接种至种子培养基中,28℃,220rpm培养46h,获得种子液;所述GYM平板终浓度组成为:葡萄糖4g/L,酵母粉4g/L,麦芽提取物10g/L,碳酸钙2g/L,琼脂18g/L,溶剂为水,pH7.2;所述种子液培养基终浓度组成为:蛋白胨10~20g/L,NaCl 5~10g/L,葡萄糖10~15g/L,酵母粉5~10g/L,CaCO3 0.5~1g/L,溶剂为水,pH 7.0。Preferably, the amphotericin B-producing recombinant Streptomyces tuberculosis is seed cultured before fermentation culture, and then the seed liquid is inoculated into the fermentation medium with an inoculum volume concentration of 2-10%, and the seed culture is : Inoculate amphotericin B-producing recombinant Streptomyces tuberculosis on a GYM plate, incubate at 28°C for 7 days, take the gray-black spores, use a cotton swab to elute the surface spores into sterile water, wash the washed spores The suspension was filtered with a syringe containing cotton, centrifuged at 12,000 rpm for 5 min, and then the supernatant was removed. After the precipitate was resuspended in sterile water, it was re-eluted by centrifugation at 12,000 rpm for 5 min, and resuspended with sterile water as a spore suspension. Inoculated into the seed medium, cultivated at 28°C and 220rpm for 46h to obtain seed liquid; the final concentration of the GYM plate is composed of: glucose 4g/L, yeast powder 4g/L, malt extract 10g/L, calcium carbonate 2g/L , agar 18g/L, the solvent is water, pH 7.2; the final concentration of the seed liquid medium is composed of:
与现有技术相比,本发明的有益效果主要体现在:Compared with the prior art, the beneficial effects of the present invention are mainly reflected in:
1、在敲除菌种的基础上过表达前体供应相关功能蛋白,增加前体供给量,可提高两性霉素B产量20%。1. On the basis of knockout strains, overexpressing the functional proteins related to precursor supply and increasing the supply of precursors can increase the production of amphotericin B by 20%.
2、提高菌种在发酵过程中对培养基营养成分的利用率,缩短发酵周期从而降低染菌风险。2. Improve the utilization rate of the nutrients in the culture medium during the fermentation process, shorten the fermentation cycle and reduce the risk of infection.
3、卡那霉素价格优廉、抗菌谱广、杀菌作用强,适用于工业中使用,对于企业总体收益率有较强提高作用,以实验室5L罐为计算,能降低成本约2000元/罐。3. The price of kanamycin is excellent and cheap, the antibacterial spectrum is wide, and the bactericidal effect is strong. It is suitable for industrial use and has a strong effect on improving the overall profitability of the enterprise. Taking the laboratory 5L tank as the calculation, it can reduce the cost by about 2,000 yuan / Can.
(四)附图说明(4) Description of drawings
图1为本发明实施例1构建替换复原质粒图谱;Fig. 1 is that the embodiment of the present invention 1 constructs replacement restoration plasmid map;
图2为本发明实施例1构建kan抗性替换质粒图谱;Fig. 2 is the construction of kan resistance replacement plasmid map in Example 1 of the present invention;
图3为实施例4中功能基因串联构建示图;3 is a schematic diagram of the tandem construction of functional genes in Example 4;
图4为实施例7中重组结节链霉菌5L发酵罐发酵结果;Fig. 4 is the fermentation result of recombinant Streptomyces tuberculosis 5L fermentation tank in Example 7;
图5为实施例9中AmB高效液相色谱(HPLC)检测标准曲线。FIG. 5 is the standard curve for the detection of AmB in Example 9 by high performance liquid chromatography (HPLC).
(五)具体实施方式(5) Specific implementation manner
下面结合具体实施例对本发明进行进一步描述,但本发明的保护范围并不仅限于此:The present invention is further described below in conjunction with specific embodiment, but the protection scope of the present invention is not limited to this:
实施例1:敲除载体构建Example 1: Knockout Vector Construction
1、同源臂1插入1. Homologous arm 1 insertion
以结节链霉菌ATCC14899全基因组为模板,设计引物TYB1-F和TYB1-R,TYB1-F为针对同源臂1的正向引物,TYB1-R为针对同源臂1基因的反向引物,从模板中克隆扩增出同源臂1基因,片段大小3000bp左右,与目的片段相符,经测序分析,结果表明扩增得到的序列与目的基因序列相同将此片段用核酸内切酶XbaI和BamHI酶切后,clean-up此片段备用,将载体pJTU1278也用同样的XbaI和BamHI核酸内切酶酶切胶回收,将回收后的基因片段与酶切后的pJTU1278载体连接,得到重组质粒载体命名为pJTU1278-TYB1。Using the whole genome of Streptomyces tuberculosis ATCC14899 as a template, primers TYB1-F and TYB1-R were designed, TYB1-F is the forward primer for homology arm 1, TYB1-R is the reverse primer for homology arm 1 gene, The homology arm 1 gene was cloned and amplified from the template. The size of the fragment is about 3000bp, which is consistent with the target fragment. After sequencing analysis, the results show that the amplified sequence is the same as the target gene sequence. This fragment was treated with endonucleases XbaI and BamHI. After enzyme digestion, clean-up this fragment for use, and recover the vector pJTU1278 with the same XbaI and BamHI endonucleases, and connect the recovered gene fragment with the digested pJTU1278 vector to obtain the name of the recombinant plasmid vector. is pJTU1278-TYB1.
其中克隆PCR体系:加入结节链霉菌ATCC14899全基因组模板1μL,加入2×PhantaMax Buffer 25μL,dNTP(2.5mM)5μL,TYB1正反引物各1μL,Phanta Max DNA聚合酶1μL,补足去离子水至50μL。Clone PCR system: add 1 μL of Streptomyces tuberculosis ATCC14899 whole genome template, add 25 μL of 2× PhantaMax Buffer, 5 μL of dNTP (2.5 mM), 1 μL of TYB1 forward and reverse primers, 1 μL of Phanta Max DNA polymerase, and make up to 50 μL of deionized water .
其中克隆PCR程序:98℃变性10s,55-60℃退火15s,72℃延伸3min,共30个循环。最后72℃延伸10min。The cloning PCR program was as follows: denaturation at 98°C for 10s, annealing at 55-60°C for 15s, and extension at 72°C for 3 min, a total of 30 cycles. A final extension at 72°C for 10 min.
其中连接过程:将T4 DNA连接酶buffer 1μL加入灭菌的PCR管中,加入回收的DNA片段4μl和载体DNA 1μl,加入T4 DNA连接酶1μl,加入ddH2O 3μl,16℃反应20小时。将连接产物转化入JM109大肠杆菌感受态,利用氨苄青霉素抗性筛选,挑选转化子进行验证。The ligation process: add 1 μL of T4 DNA ligase buffer into a sterilized PCR tube, add 4 μl of recovered DNA fragments and 1 μl of vector DNA, add 1 μl of T4 DNA ligase, add 3 μl of ddH 2 O, and react at 16°C for 20 hours. The ligated product was transformed into JM109 E. coli competent, and the transformants were selected for verification by ampicillin resistance screening.
所用引物如下:The primers used are as follows:
2、同源臂2插入2.
以结节链霉菌ATCC14899全基因组为模板,设计引物TYB2-F和TYB2-R,TYB2-F为针对同源臂2的正向引物,TYB2-R为针对同源臂2基因的反向引物,从模板中克隆扩增出同源臂2基因,片段大小3000bp左右,与目的片段相符,经测序分析,结果表明扩增得到的序列与目的基因序列相同将此片段用核酸内切酶HindIII和KpnI酶切后,clean-up此片段备用,将载体pJTU1278-TYB1也用同样的HindIII和KpnI核酸内切酶酶切胶回收,将回收后的基因片段与酶切后的pJTU1278-TYB1载体连接,得到重组质粒载体命名为pJTU1278-TYB1-TYB2,如图1所示。Using the whole genome of Streptomyces tuberculosis ATCC14899 as a template, primers TYB2-F and TYB2-R were designed, TYB2-F was the forward primer for
其中克隆PCR体系:加入结节链霉菌ATCC14899全基因组模板1μL,加入2×PhantaMax Buffer 25μL,dNTP(2.5mM)5μL,TYB2正反引物各1μL,Phanta Max DNA聚合酶1μL,补足去离子水至50μL。Clone PCR system: add 1 μL of Streptomyces tuberculosis ATCC14899 whole genome template, add 25 μL of 2× PhantaMax Buffer, 5 μL of dNTP (2.5 mM), 1 μL of TYB2 forward and reverse primers, 1 μL of Phanta Max DNA polymerase, and make up to 50 μL of deionized water .
其中克隆PCR程序:98℃变性10s,55-60℃退火15s,72℃延伸3min,共30个循环。最后72℃延伸10min。The cloning PCR program was as follows: denaturation at 98°C for 10s, annealing at 55-60°C for 15s, and extension at 72°C for 3 min, a total of 30 cycles. A final extension at 72°C for 10 min.
其中连接过程:将T4 DNA连接酶buffer 1μL加入灭菌的PCR管中,加入回收的DNA片段4μl和载体DNA 1μl,加入T4 DNA连接酶1μl,加入ddH2O 3μl,16℃反应20小时。将连接产物转化入JM109大肠杆菌感受态,利用氨苄青霉素抗性筛选,挑选转化子进行验证。The ligation process: add 1 μL of T4 DNA ligase buffer into a sterilized PCR tube, add 4 μl of recovered DNA fragments and 1 μl of vector DNA, add 1 μl of T4 DNA ligase, add 3 μl of ddH 2 O, and react at 16°C for 20 hours. The ligated product was transformed into JM109 E. coli competent, and the transformants were selected for verification by ampicillin resistance screening.
所用引物如下:The primers used are as follows:
3、抗性筛选标签插入3. Resistance screening tag insertion
以pET28b为模板,设计引物kan-F和kan-R,kan-F为针对卡纳抗性基因的正向引物,kan-R为针对卡纳抗性基因的反向引物,从模板中克隆扩增出卡纳抗性基因,片段大小900bp左右,与目的片段相符,经测序分析,结果表明扩增得到的序列与目的基因序列相同将此片段用核酸内切酶HindIII和BamHI酶切后,clean-up此片段备用,将载体pJTU1278-TYB1-TYB2也用同样的HindIII和BamHI核酸内切酶酶切胶回收,将回收后的基因片段与酶切后的pJTU1278-TYB1-TYB2载体连接,得到重组质粒载体命名为pJTU1278-TYB1-kan-TYB2,如图2所示。Using pET28b as a template, design primers kan-F and kan-R, kan-F is the forward primer for the canna resistance gene, kan-R is the reverse primer for the canna resistance gene, clone and expand from the template. The Kana resistance gene was added, and the fragment size was about 900bp, which was consistent with the target fragment. After sequencing analysis, the results showed that the amplified sequence was the same as the target gene sequence. After the fragment was digested with endonucleases HindIII and BamHI, clean -up this fragment for later use, the vector pJTU1278-TYB1-TYB2 is also recovered with the same HindIII and BamHI endonucleases, and the recovered gene fragment is connected with the digested pJTU1278-TYB1-TYB2 vector to obtain recombination The plasmid vector was named pJTU1278-TYB1-kan-TYB2, as shown in Figure 2.
其中克隆PCR体系:加入结节链霉菌ATCC14899全基因组模板1μL,加入2×PhantaMax Buffer 25μL,dNTP(2.5mM)5μL,卡纳抗性基因正反引物各1μL,Phanta Max DNA聚合酶1μL,补足去离子水至50μL。Clone PCR system: add 1 μL of Streptomyces tuberculosis ATCC14899 whole genome template, add 25 μL of 2× PhantaMax Buffer, 5 μL of dNTP (2.5 mM), 1 μL of each of the forward and reverse primers of Kana resistance gene, and 1 μL of Phanta Max DNA polymerase, make up Ionized water to 50 μL.
其中克隆PCR程序:98℃变性10s,55-60℃退火15s,72℃延伸1min,共30个循环。最后72℃延伸10min。The cloning PCR program: denaturation at 98°C for 10s, annealing at 55-60°C for 15s, and extension at 72°C for 1 min, for a total of 30 cycles. A final extension at 72°C for 10 min.
其中连接过程:将T4 DNA连接酶buffer 1μL加入灭菌的PCR管中,加入回收的DNA片段4μl和载体DNA 1μl,加入T4 DNA连接酶1μl,加入ddH2O 3μl,16℃反应20小时。将连接产物转化入JM109大肠杆菌感受态,利用氨苄青霉素抗性筛选,挑选转化子进行验证。The ligation process: add 1 μL of T4 DNA ligase buffer into a sterilized PCR tube, add 4 μl of recovered DNA fragments and 1 μl of vector DNA, add 1 μl of T4 DNA ligase, add 3 μl of ddH 2 O, and react at 16°C for 20 hours. The ligated product was transformed into JM109 E. coli competent, and the transformants were selected for verification by ampicillin resistance screening.
所用引物如下:The primers used are as follows:
实施例2:抗性基因组替换Example 2: Resistance Genome Replacement
重组载体pJTU1278-TYB1-kan-TYB2接合转移转化受体菌结节链霉菌A)含重组载体pJTU1278-TYB1-kan-TYB2的E.coil ET12567/puz8002供体菌的准备:Recombinant vector pJTU1278-TYB1-kan-TYB2 conjugation transfer transformation recipient strain Streptomyces tuberculosis A) Preparation of E.coil ET12567/puz8002 donor strain containing recombinant vector pJTU1278-TYB1-kan-TYB2:
将构建好的重组载体pJTU1278-TYB1-kan-TYB2,导入E.coil ET12567/puz8002大肠杆菌感受态中,利用氨苄青霉素(Amp+,50μg/mL)、氯霉素(Cm+,50μg/mL)、卡那霉素(Kan+,50μg/mL)抗性筛选,挑取阳性转化子,通过M13上下游引物菌落PCR验证,结果证明重组载体pJTU1278-TYB1-kan-TYB2成功转化入E.coil ET12567/puz8002。具体操作如下:The constructed recombinant vector pJTU1278-TYB1-kan-TYB2 was introduced into E.coil ET12567/puz8002 E. coli competent, using ampicillin (Amp + , 50μg/mL), chloramphenicol (Cm + , 50μg/mL) , kanamycin (Kan + , 50μg/mL) resistance screening, pick positive transformants, and verify by M13 upstream and downstream primer colony PCR, the results prove that the recombinant vector pJTU1278-TYB1-kan-TYB2 was successfully transformed into E.coil ET12567 /puz8002. The specific operations are as follows:
E.coil ET12567/puz8002大肠杆菌感受态制备方法如下:E.coil ET12567/puz8002 Escherichia coli competent preparation method is as follows:
从菌种的甘油冻存管中取E.coil ET12567/puz8002大肠杆菌菌液在LB平板上分区划线,37℃培养至单菌落长出。挑取平板上的单菌落转移到2~5mL的LB培养基中37℃,200rpm过夜培养。取过夜培养的菌液200μL加入到20mL的LB培养基中37℃,200rpm培养至OD600为0.4~0.7。培养好的菌液转移至预冷的50mL离心管中,冰上静置10min。离心4℃,2500×g,5min。弃上清液,加入4mL 0.1mol/L CaCl2,冰上重悬后静置10min。离心4℃,2500×g,5min。弃上清,加入2mL 0.1mol/L CaCl2(溶液中含终浓度为15%的甘油),重悬沉淀,冰上静置30min,获得E.coil ET12567/puz8002大肠杆菌感受态细胞。分装100μL/tube,-80℃保藏。Take the E.coil ET12567/puz8002 E.coli bacterial solution from the glycerol cryopreservation tube of the strain and streak it on the LB plate, and cultivate it at 37°C until a single colony grows. Pick a single colony on the plate and transfer it to 2-5 mL of LB medium for overnight culture at 37°C and 200 rpm. Take 200 μL of the overnight cultured bacterial solution and add it to 20 mL of LB medium at 37° C. and cultivate at 200 rpm until the OD600 is 0.4 to 0.7. The cultured bacterial solution was transferred to a pre-cooled 50 mL centrifuge tube and placed on ice for 10 min. Centrifuge at 4°C, 2500×g, 5min. Discard the supernatant, add 4 mL of 0.1 mol/L CaCl 2 , resuspend on ice and let stand for 10 min. Centrifuge at 4°C, 2500×g, 5min. The supernatant was discarded, 2 mL of 0.1 mol/L CaCl 2 was added (the solution contained glycerol with a final concentration of 15%), the pellet was resuspended, and allowed to stand on ice for 30 min to obtain E.coil ET12567/puz8002 E. coli competent cells. Aliquot 100μL/tube and store at -80°C.
含重组载体pJTU1278-TYB1-kan-TYB2的E.coil ET12567/puz8002供体菌的制备:Preparation of E.coil ET12567/puz8002 donor bacteria containing recombinant vector pJTU1278-TYB1-kan-TYB2:
取1支上述的E.coil ET12567/puz8002大肠杆菌感受态细胞,冰浴5min,加入5μL浓度为200ng/μL的pJTU1278-TYB1-kan-TYB2载体质粒,冰浴30min,于42℃水浴,热激90s,放回冰浴1min,加入600μL LB液体培养基,37℃,200rpm,培养1h。吸取200μL,均匀涂布于Kan+(终浓度50μg/mL)、Cm+(终浓度50μg/mL)、Amp+(终浓度50μg/mL)抗性的LB固体平板,于37℃培养箱培养14h。至长出含重组载体pJTU1278-TYB1-kan-TYB2的E.coil ET12567/puz8002单菌落。Take 1 E.coil ET12567/puz8002 E. coli competent cell, ice-bath for 5min, add 5μL pJTU1278-TYB1-kan-TYB2 vector plasmid at a concentration of 200ng/μL, ice-bath for 30min, water bath at 42°C, heat shock After 90 s, put it back into the ice bath for 1 min, add 600 μL of LB liquid medium, and incubate for 1 h at 37° C., 200 rpm. Pipette 200 μL, spread evenly on Kan+ (
M13验证PCR体系:挑取单菌落,加入20μL无菌水,沸水浴5~10min,12000rpm离心1min。取1μL上清液作为模板,加入10×pfu Buffer 1μL,dNTP(2.5mM)0.1μL,M13正反引物各0.1μL,pfu DNA聚合酶0.1μL,补足去离子水至10μL。M13 verification PCR system: pick a single colony, add 20 μL of sterile water, take a boiling water bath for 5-10 min, and centrifuge at 12,000 rpm for 1 min. Take 1 μL of the supernatant as a template, add 1 μL of 10×pfu Buffer, 0.1 μL of dNTP (2.5 mM), 0.1 μL of M13 forward and reverse primers, 0.1 μL of pfu DNA polymerase, and make up to 10 μL of deionized water.
M13验证PCR程序:98℃变性10s,55~60℃退火15s,72℃延伸8min,共30个循环。最后72℃延伸10min。M13 verification PCR program: denaturation at 98°C for 10s, annealing at 55-60°C for 15s, and extension at 72°C for 8 min, a total of 30 cycles. A final extension at 72°C for 10 min.
M13引物如下:M13 primers are as follows:
将已导入pJTU1278-TYB1-kan-TYB2质粒的ET12567/puz8002大肠杆菌,划线分离单菌落,37℃培养,挑单菌落于装有5mL LB培养基试管,并同时加入Kan+(终浓度50μg/mL)、Cm+(终浓度50μg/mL)、Amp+(终浓度50μg/mL)抗生素,37℃培养14h。转接500μL于50mL LB摇瓶中,同时加入Kan+(终浓度50μg/mL)、Cm+(终浓度50μg/mL)、Amp+(终浓度50μg/mL)抗性,37℃培养至OD600为0.35。用50mL离心管将供体菌离心,4000rpm,5min,再用50mL LB培养基洗两次,用5mL LB培养基重悬,4℃保存备用。The ET12567/puz8002 Escherichia coli that had been introduced into the pJTU1278-TYB1-kan-TYB2 plasmid was streaked to isolate a single colony, cultured at 37 °C, and the single colony was picked into a test tube containing 5 mL of LB medium, and Kan + (
其中LB培养基由以下方法制得:蛋白胨10g,酵母粉5g,氯化钠5g,自来水定容至1L,pH自然,121度灭菌20min。The LB medium was prepared by the following method: 10 g of peptone, 5 g of yeast powder, 5 g of sodium chloride, constant volume to 1 L with tap water, natural pH, and sterilized at 121 degrees for 20 min.
B)受体菌Streptomyces nodosus的制备B) Preparation of recipient strain Streptomyces nodosus
将实验室菌种的Streptomyces nodosus ZJB2016050(CCTCC M 2017426)接种在GYM平板或斜面培养物上,28℃生长10d,获得灰黑色的孢子,使用棉花棒将表面孢子洗脱至10mL 2×YT培养基中,将洗下的孢子悬液用含有棉花的注射器过滤,过滤后的孢子12000rpm,离心5min后去上清,加入10mL 2×YT培养基重悬,12000rpm离心5min重新洗脱一次,最后用500μL 2×YT培养基重悬。将重悬好的孢子在50℃热激15~20min后,常温下备用。Inoculate Streptomyces nodosus ZJB2016050 (CCTCC M 2017426) of laboratory strains on GYM plates or slant cultures, grow at 28°C for 10 days, obtain gray-black spores, and use cotton swabs to elute the surface spores to 10 mL of 2×YT medium The washed spore suspension was filtered with a syringe containing cotton, the filtered spores were centrifuged at 12,000 rpm for 5 min, the supernatant was removed, 10 mL of 2×YT medium was added to resuspend, and 12,000 rpm was centrifuged for 5 min. Resuspend in 2x YT medium. The resuspended spores were heat-shocked at 50°C for 15-20 min, and then used at room temperature.
其中2×YT培养基由以下方法制得:蛋白胨16g,酵母粉10g,氯化钠5g,自来水定容至1L,pH自然,121度灭菌20min。The 2×YT medium was prepared by the following method: 16 g of peptone, 10 g of yeast powder, 5 g of sodium chloride, constant volume to 1 L with tap water, natural pH, and sterilized at 121 degrees for 20 min.
GYM固体培养基配制方法:葡萄糖4g,酵母粉4g,麦芽提取物10g,碳酸钙2g,琼脂18g,自来水定容至1L,pH7.2,121度灭菌20min。GYM solid medium preparation method: glucose 4g, yeast powder 4g, malt extract 10g, calcium carbonate 2g, agar 18g, tap water to 1L, pH 7.2, sterilization at 121 degrees for 20min.
C)供、受体菌接合过程:C) Conjugation process of donor and recipient bacteria:
将步骤B)500μL热激完的孢子悬液与步骤A)500μL供体大肠杆菌悬液混合重悬后,6000rpm离心2min,去掉800μL上清液,剩余上清将沉淀重悬涂布在含有10mM氯化镁的MS固体培养基平板上。28℃培养20h后,涂布1mL含0.5mg萘碇酸和0.5mg硫链丝菌素抗生素的水溶液,继续28℃培养10天,至出现转化子。After mixing and resuspending 500 μL of the heat-shocked spore suspension in step B) and 500 μL of the donor E. coli suspension in step A), centrifuge at 6000 rpm for 2 min, remove 800 μL of the supernatant, and resuspend the remaining supernatant in a solution containing 10 mM. MgCl on MS solid medium plates. After culturing at 28°C for 20 hours, apply 1 mL of an aqueous solution containing 0.5 mg of naphthoric acid and 0.5 mg of thiostrepton antibiotic, and continue to culture at 28°C for 10 days until transformants appear.
将转化子在含有终浓度50μg/mL萘碇酸和终浓度50μg/mL卡那霉抗性的GYM固体平板上连续纯化3次,直至获得单一菌落,使用16S RNA上下游引物(16S-8和16S-1541)以及M13上下游引物(M13(-21)F、M13R)对转化子菌落PCR验证后,测序对比分析,证实质粒(pJTU1278-TYB1-kan-TYB2)已导入受体菌Streptomyces nodosus ZJB2016050中,最终获得产AmB的基因工程菌,即重组结节链霉菌pJTU1278-TYB1-kan-TYB2。通过几轮带抗性培养,加入Kan+(终浓度50μg/mL)得到最终替换成功的菌种Streptomyces nodosusZJB2016050-De5。Transformants were serially purified 3 times on GYM solid plates containing a final concentration of 50 μg/mL naphthenic acid and kanamycin resistance at a final concentration of 50 μg/mL until a single colony was obtained, using 16S RNA upstream and downstream primers (16S-8 and 16S-1541) and M13 upstream and downstream primers (M13(-21)F, M13R) were verified by PCR on the transformant colonies, and the sequencing and comparison analysis confirmed that the plasmid (pJTU1278-TYB1-kan-TYB2) had been introduced into the recipient strain Streptomyces nodosus ZJB2016050 , and finally obtained the genetically engineered bacteria producing AmB, namely recombinant Streptomyces tuberculosis pJTU1278-TYB1-kan-TYB2. Through several rounds of resistant culture, Kan + (
其中MS固体培养基由以下方法制得:黄豆粉20g,甘露醇20g,琼脂20g,自来水定容至1L,用氢氧化钠调至pH 7.2,121度灭菌20min。使用前加入终浓度10mM无菌氯化镁。The MS solid medium was prepared by the following method: soybean powder 20g, mannitol 20g, agar 20g, tap water to 1L, adjusted to pH 7.2 with sodium hydroxide, and sterilized at 121°C for 20min. Sterile magnesium chloride was added at a final concentration of 10 mM before use.
其中M13验证PCR操作如步骤A)所述。Wherein the M13 verification PCR operation is as described in step A).
其中16sRNA验证PCR体系:挑取单菌落,加入20μL无菌水,沸水浴30min,12000rpm离心1min。取3μL上清液作为模板,加入2×Phanta Max Buffer 5μL,dNTP(2.5mM)0.1μL,16S正反引物各0.1μL,Phanta Max DNA聚合酶0.1μL,补足去离子水至10μL。16sRNA verification PCR system: pick a single colony, add 20 μL sterile water, take a boiling water bath for 30 min, and centrifuge at 12000 rpm for 1 min. Take 3 μL of supernatant as template, add 5 μL of 2× Phanta Max Buffer, 0.1 μL of dNTP (2.5 mM), 0.1 μL of 16S forward and reverse primers, 0.1 μL of Phanta Max DNA polymerase, and make up to 10 μL of deionized water.
其中16S RNA验证PCR程序:98℃变性10s,55~60℃退火15s,72℃延伸1min 30s,共30个循环。最后72℃延伸10min。The 16S RNA verification PCR program was as follows: denaturation at 98°C for 10s, annealing at 55-60°C for 15s, and extension at 72°C for 1min 30s, a total of 30 cycles. A final extension at 72°C for 10 min.
其中所用引物如下:The primers used are as follows:
实施例3:敲除抗性标签复原Example 3: Knockout Resistance Tag Recovery
重组载体pJTU1278-TYB1-TYB2接合转移转化受体菌结节链霉菌Streptomycesnodosus ZJB2016050-De5Recombinant vector pJTU1278-TYB1-TYB2 conjugation and transfer transformation recipient bacterium Streptomycesnodosus ZJB2016050-De5
A)含重组载体pJTU1278-TYB1-TYB2的E.coil ET12567/puz8002供体菌的准备:A) Preparation of E.coil ET12567/puz8002 donor bacteria containing recombinant vector pJTU1278-TYB1-TYB2:
将构建好的重组载体pJTU1278-TYB1-TYB2,导入E.coil ET12567/puz8002大肠杆菌感受态中,利用氨苄青霉素(Amp+,50μg/mL)、氯霉素(Cm+,50μg/mL)、卡那霉素(Kan+,50μg/mL)抗性筛选,挑取阳性转化子,通过M13上下游引物菌落PCR验证,结果证明重组载体pJTU1278-TYB1-TYB2成功转化入E.coil ET12567/puz8002。具体操作如下:The constructed recombinant vector pJTU1278-TYB1-TYB2 was introduced into E.coil ET12567/puz8002 E. coli competent, using ampicillin (Amp + , 50μg/mL), chloramphenicol (Cm + , 50μg/mL), Namycin (Kan + , 50μg/mL) resistance was screened, positive transformants were picked and verified by M13 upstream and downstream primer colony PCR. The results proved that the recombinant vector pJTU1278-TYB1-TYB2 was successfully transformed into E.coil ET12567/puz8002. The specific operations are as follows:
E.coil ET12567/puz8002大肠杆菌感受态制备方法如下:E.coil ET12567/puz8002 Escherichia coli competent preparation method is as follows:
从菌种的甘油冻存管中取E.coil ET12567/puz8002大肠杆菌菌液在LB平板上分区划线,37℃培养至单菌落长出。挑取平板上的单菌落转移到2~5mL的LB培养基中37℃,200rpm过夜培养。取过夜培养的菌液200μL加入到20mL的LB培养基中37℃,200rpm培养至OD600为0.4~0.7。培养好的菌液转移至预冷的50mL离心管中,冰上静置10min。离心4℃,2500×g,5min。弃上清液,加入4mL 0.1mol/L CaCl2,冰上重悬后静置10min。离心4℃,2500×g,5min。弃上清,加入2mL 0.1mol/L CaCl2(溶液中含终浓度为15%的甘油),重悬沉淀,冰上静置30min,获得E.coil ET12567/puz8002大肠杆菌感受态细胞。分装100μL/tube,-80℃保藏。Take the E.coil ET12567/puz8002 E.coli bacterial solution from the glycerol cryopreservation tube of the strain and streak it on the LB plate, and cultivate it at 37°C until a single colony grows. Pick a single colony on the plate and transfer it to 2-5 mL of LB medium for overnight culture at 37°C and 200 rpm. Take 200 μL of the overnight cultured bacterial solution and add it to 20 mL of LB medium at 37° C. and cultivate at 200 rpm until the OD600 is 0.4 to 0.7. The cultured bacterial solution was transferred to a pre-cooled 50 mL centrifuge tube and placed on ice for 10 min. Centrifuge at 4°C, 2500×g, 5min. Discard the supernatant, add 4 mL of 0.1 mol/L CaCl 2 , resuspend on ice and let stand for 10 min. Centrifuge at 4°C, 2500×g, 5min. The supernatant was discarded, 2 mL of 0.1 mol/L CaCl 2 was added (the solution contained glycerol with a final concentration of 15%), the pellet was resuspended, and allowed to stand on ice for 30 min to obtain E.coil ET12567/puz8002 E. coli competent cells. Aliquot 100μL/tube and store at -80°C.
含重组载体pJTU1278-TYB1-TYB2的E.coil ET12567/puz8002供体菌的制备:Preparation of E.coil ET12567/puz8002 donor bacteria containing recombinant vector pJTU1278-TYB1-TYB2:
取1支上述的E.coil ET12567/puz8002大肠杆菌感受态细胞,冰浴5min,加入5μL浓度为200ng/μL的pJTU1278-TYB1-TYB2载体质粒,冰浴30min,于42℃水浴,热激90s,放回冰浴1min,加入600μL LB液体培养基,37℃,200rpm,培养1h。吸取200μL,均匀涂布于Kan+(终浓度50μg/mL)、Cm+(终浓度50μg/mL)、Amp+(终浓度50μg/mL)抗性的LB固体平板,于37℃培养箱培养14h。至长出含重组载体pJTU1278-TYB1-TYB2的E.coil ET12567/puz8002单菌落。Take 1 E.coil ET12567/puz8002 E. coli competent cell, ice-bath for 5min, add 5μL of pJTU1278-TYB1-TYB2 vector plasmid with a concentration of 200ng/μL, ice-bath for 30min, water bath at 42°C, heat shock for 90s, Put it back in the ice bath for 1 min, add 600 μL of LB liquid medium, and incubate for 1 h at 37° C., 200 rpm. Pipette 200 μL, spread evenly on Kan+ (
M13验证PCR体系:挑取单菌落,加入20μL无菌水,沸水浴5~10min,12000rpm离心1min。取1μL上清液作为模板,加入10×pfu Buffer 1μL,dNTP(2.5mM)0.1μL,M13正反引物各0.1μL,pfu DNA聚合酶0.1μL,补足去离子水至10μL。M13 verification PCR system: pick a single colony, add 20 μL of sterile water, take a boiling water bath for 5-10 min, and centrifuge at 12,000 rpm for 1 min. Take 1 μL of the supernatant as a template, add 1 μL of 10×pfu Buffer, 0.1 μL of dNTP (2.5 mM), 0.1 μL of M13 forward and reverse primers, 0.1 μL of pfu DNA polymerase, and make up to 10 μL of deionized water.
M13验证PCR程序:98℃变性10s,55~60℃退火15s,72℃延伸8min,共30个循环。最后72℃延伸10min。M13 verification PCR program: denaturation at 98°C for 10s, annealing at 55-60°C for 15s, and extension at 72°C for 8 min, a total of 30 cycles. A final extension at 72°C for 10 min.
M13引物如下:M13 primers are as follows:
将已导入pJTU1278-TYB1-TYB2质粒的ET12567/puz8002大肠杆菌,划线分离单菌落,37℃培养,挑单菌落于装有5mL LB培养基试管,并同时加入Kan+(终浓度50μg/mL)、Cm+(终浓度50μg/mL)、Amp+(终浓度50μg/mL)抗生素,37℃培养14h。转接500μL于50mL LB摇瓶中,同时加入Kan+(终浓度50μg/mL)、Cm+(终浓度50μg/mL)、Amp+(终浓度50μg/mL)抗性,37℃培养至OD600为0.35。用50mL离心管将供体菌离心,4000rpm,5min,再用50mL LB培养基洗两次,用5mL LB培养基重悬,4℃保存备用。The ET12567/puz8002 E. coli that had been introduced into the pJTU1278-TYB1-TYB2 plasmid was streaked to isolate a single colony, cultured at 37°C, and the single colony was picked in a test tube containing 5 mL of LB medium, and Kan + (
其中LB培养基由以下方法制得:蛋白胨10g,酵母粉5g,氯化钠5g,自来水定容至1L,pH自然,121度灭菌20min。The LB medium was prepared by the following method: 10 g of peptone, 5 g of yeast powder, 5 g of sodium chloride, constant volume to 1 L with tap water, natural pH, and sterilized at 121 degrees for 20 min.
B)受体菌Streptomyces nodosus的制备B) Preparation of recipient strain Streptomyces nodosus
将实验室菌种的Streptomyces nodosus ZJB2016050-De5接种在GYM平板或斜面培养物上,28℃生长10d,获得灰黑色的孢子,使用棉花棒将表面孢子洗脱至10mL 2×YT培养基中,将洗下的孢子悬液用含有棉花的注射器过滤,过滤后的孢子12000rpm,离心5min后去上清,加入10mL 2×YT培养基重悬,12000rpm离心5min重新洗脱一次,最后用500μL 2×YT培养基重悬。将重悬好的孢子在50℃热激15~20min后,常温下备用。The laboratory strain Streptomyces nodosus ZJB2016050-De5 was inoculated on a GYM plate or slant culture, and grown at 28°C for 10 days to obtain gray-black spores. The surface spores were eluted into 10 mL of 2×YT medium using a cotton swab. The washed spore suspension was filtered with a syringe containing cotton, and the filtered spores were centrifuged at 12,000 rpm for 5 min to remove the supernatant, resuspended in 10 mL of 2×YT medium, and re-eluted by centrifugation at 12,000 rpm for 5 min. The medium was resuspended. The resuspended spores were heat-shocked at 50°C for 15-20 min, and then used at room temperature.
其中2×YT培养基由以下方法制得:蛋白胨16g,酵母粉10g,氯化钠5g,自来水定容至1L,pH自然,121度灭菌20min。The 2×YT medium was prepared by the following method: 16 g of peptone, 10 g of yeast powder, 5 g of sodium chloride, constant volume to 1 L with tap water, natural pH, and sterilized at 121 degrees for 20 min.
GYM固体培养基配制方法:葡萄糖4g,酵母粉4g,麦芽提取物10g,碳酸钙2g,琼脂18g,自来水定容至1L,pH7.2,121度灭菌20min。GYM solid medium preparation method: glucose 4g, yeast powder 4g, malt extract 10g, calcium carbonate 2g, agar 18g, tap water to 1L, pH 7.2, sterilization at 121 degrees for 20min.
C)供、受体菌接合过程:C) Conjugation process of donor and recipient bacteria:
将步骤B)500μL热激完的孢子悬液与步骤A)500μL供体大肠杆菌悬液混合重悬后,6000rpm离心2min,去掉800μL上清液,剩余上清将沉淀重悬涂布在含有10mM氯化镁的MS固体培养基平板上。28℃培养20h后,涂布1mL含0.5mg萘碇酸和0.5mg硫链丝菌素抗生素的水溶液,继续28℃培养10天,至出现转化子。After mixing and resuspending 500 μL of the heat-shocked spore suspension in step B) and 500 μL of the donor E. coli suspension in step A), centrifuge at 6000 rpm for 2 min, remove 800 μL of the supernatant, and resuspend the remaining supernatant in a solution containing 10 mM. MgCl on MS solid medium plates. After culturing at 28°C for 20 hours, apply 1 mL of an aqueous solution containing 0.5 mg of naphthoric acid and 0.5 mg of thiostrepton antibiotic, and continue to culture at 28°C for 10 days until transformants appear.
将转化子在含有终浓度50μg/mL萘碇酸和终浓度50μg/mL卡那霉抗性的GYM固体平板上连续纯化3次,直至获得单一菌落,使用16S RNA上下游引物(16S-8和16S-1541)以及M13上下游引物(M13(-21)F、M13R)对转化子菌落PCR验证后,测序对比分析,证实质粒(pJTU1278-TYB1-TYB2)已导入受体菌Streptomyces nodosus ZJB2016050-De5中,最终获得产AmB的基因工程菌,即重组结节链霉菌pJTU1278-TYB1-TYB2。通过几轮带抗性培养,加加入Kan+(终浓度50μg/mL)得到最终替换成功的菌种Streptomyces nodosus ZJB2016050-Re5。Transformants were serially purified 3 times on GYM solid plates containing a final concentration of 50 μg/mL naphthenic acid and kanamycin resistance at a final concentration of 50 μg/mL until a single colony was obtained, using 16S RNA upstream and downstream primers (16S-8 and 16S-1541) and M13 upstream and downstream primers (M13(-21)F, M13R) were verified by PCR on the transformant colonies, and the sequencing and comparison analysis confirmed that the plasmid (pJTU1278-TYB1-TYB2) had been introduced into the recipient strain Streptomyces nodosus ZJB2016050-De5 Finally, a genetically engineered bacteria producing AmB, the recombinant Streptomyces tuberculosis pJTU1278-TYB1-TYB2, was finally obtained. After several rounds of resistant culture, Kan + (
其中MS固体培养基由以下方法制得:黄豆粉20g,甘露醇20g,琼脂20g,自来水定容至1L,用氢氧化钠调至pH 7.2,121度灭菌20min。使用前加入终浓度10mM无菌氯化镁。The MS solid medium was prepared by the following method: soybean powder 20g, mannitol 20g, agar 20g, tap water to 1L, adjusted to pH 7.2 with sodium hydroxide, and sterilized at 121°C for 20min. Sterile magnesium chloride was added at a final concentration of 10 mM before use.
其中M13验证PCR操作如步骤A)所述。Wherein the M13 verification PCR operation is as described in step A).
其中16sRNA验证PCR体系:挑取单菌落,加入20μL无菌水,沸水浴30min,12000rpm离心1min。取3μL上清液作为模板,加入2×Phanta Max Buffer 5μL,dNTP(2.5mM)0.1μL,16S正反引物各0.1μL,Phanta Max DNA聚合酶0.1μL,补足去离子水至10μL。16sRNA verification PCR system: pick a single colony, add 20 μL sterile water, take a boiling water bath for 30 min, and centrifuge at 12000 rpm for 1 min. Take 3 μL of supernatant as template, add 5 μL of 2× Phanta Max Buffer, 0.1 μL of dNTP (2.5 mM), 0.1 μL of 16S forward and reverse primers, 0.1 μL of Phanta Max DNA polymerase, and make up to 10 μL of deionized water.
其中16S RNA验证PCR程序:98℃变性10s,55~60℃退火15s,72℃延伸1min 30s,共30个循环。最后72℃延伸10min。The 16S RNA verification PCR program was as follows: denaturation at 98°C for 10s, annealing at 55-60°C for 15s, and extension at 72°C for 1min 30s, a total of 30 cycles. A final extension at 72°C for 10 min.
实施例4:功能基因串联载体构建Example 4: Construction of functional gene tandem vector
以结节链霉菌ATCC14899全基因组为模板,设计引物mcm-F和mcm-R,从模板中克隆扩增出乙酰辅酶A羧化酶1基因(acc1),片段大小1776bp左右,乙酰辅酶A羧化酶2基因(acc2),片段大小1941bp左右,聚酮合酶PKSamphA,片段大小4239bp左右,甲基丙二酰辅酶A变位酶(mcm),片段大小1737bp左右,甲基丙二酰辅酶A异构酶(mme)片段大小441bp左右,与目的片段相符,经测序分析,结果表明扩增得到的序列与目的基因序列相同,乙酰辅酶A羧化酶1(acc1)基因的核苷酸序列如SEQ ID NO.1所示,乙酰辅酶A羧化酶2基因(acc2)的核苷酸序列如SEQ ID NO.2所示,聚酮合酶PKSamphA的基因核苷酸序列如SEQ ID NO.3所示,甲基丙二酰辅酶A变位酶(mcm)基因的核苷酸序列如SEQ ID NO.4所示,甲基丙二酰辅酶A异构酶基因(mme)的核苷酸序列如SEQ ID NO.5所示,。将此片段用核酸内切酶BamHI和HindIII酶切后,clean-up此片段备用,将载体pJTU1278也用同样的BamHI和HindIII核酸内切酶酶切胶回收,将回收后的基因片段与酶切后的pJTU1278载体连接,得到重组质粒载体命名为pJTU1278-acc1-acc2-amphA-mcm-mme,示意图见图3。Using the whole genome of Streptomyces tuberculosis ATCC14899 as a template, the primers mcm-F and mcm-R were designed, and the acetyl-CoA carboxylase 1 gene (acc1) was cloned and amplified from the template. The fragment size was about 1776bp.
其中克隆PCR体系:加入基因组模板1μL,加入2×Phanta Max Buffer 25μL,dNTP(2.5mM)5μL,对应的正反引物各1μL,Phanta Max DNA聚合酶1μL,补足去离子水至50μL。Clone PCR system: add 1 μL of genomic template, 25 μL of 2× Phanta Max Buffer, 5 μL of dNTP (2.5 mM), 1 μL of corresponding forward and reverse primers, 1 μL of Phanta Max DNA polymerase, and make up to 50 μL of deionized water.
其中克隆PCR程序:98℃变性10s,55~60℃退火15s,72℃延伸2min,共30个循环。最后72℃延伸10min。The cloning PCR program was as follows: denaturation at 98°C for 10s, annealing at 55-60°C for 15s, and extension at 72°C for 2 min, a total of 30 cycles. A final extension at 72°C for 10 min.
其中连接过程:将T4 DNA连接酶buffer 1μL加入灭菌的PCR管中,加入回收的DNA片段4μL和载体DNA 1μL,加入T4 DNA连接酶1μL,加入ddH2O 3μL,16℃反应20小时。将连接产物转化入JM109大肠杆菌感受态,利用氨苄青霉素抗性筛选,挑选转化子进行验证。The ligation process: add 1 μL of T4 DNA ligase buffer into a sterilized PCR tube, add 4 μL of recovered DNA fragments and 1 μL of vector DNA, add 1 μL of T4 DNA ligase, add 3 μL of ddH 2 O, and react at 16°C for 20 hours. The ligated product was transformed into JM109 E. coli competent, and the transformants were selected for verification by ampicillin resistance screening.
实施例5:功能基因表达Example 5: Functional gene expression
将构建好的重组载体pJTU1278-acc1-acc2-amphA-mcm-mme,导入E.coilET12567/puz8002大肠杆菌感受态中,利用氨苄青霉素(Amp+,50μg/mL)、氯霉素(Cm+,50μg/mL)、卡那霉素(Kan+,50μg/mL)抗性筛选,挑取阳性转化子,通过M13上下游引物菌落PCR验证,结果证明重组载体pJTU1278-acc1-acc2-amphA-mcm-mme成功转化入E.coil ET12567/puz8002。具体操作如下:The constructed recombinant vector pJTU1278-acc1-acc2-amphA-mcm-mme was introduced into E.coilET12567/puz8002 Escherichia coli competent, using ampicillin (Amp + , 50μg/mL), chloramphenicol (Cm + , 50μg /mL), kanamycin (Kan + , 50μg/mL) resistance screening, positive transformants were picked and verified by M13 upstream and downstream primer colony PCR, the results proved that the recombinant vector pJTU1278-acc1-acc2-amphA-mcm-mme Successfully transformed into E.coil ET12567/puz8002. The specific operations are as follows:
E.coil ET12567/puz8002大肠杆菌感受态制备方法如下:E.coil ET12567/puz8002 Escherichia coli competent preparation method is as follows:
从菌种的甘油冻存管中取E.coil ET12567/puz8002大肠杆菌菌液在LB平板上分区划线,37℃培养至单菌落长出。挑取平板上的单菌落转移到2~5mL的LB培养基中37℃,200rpm过夜培养。取过夜培养的菌液200μL加入到20mL的LB培养基中37℃,200rpm培养至OD600为0.4~0.7。培养好的菌液转移至预冷的50mL离心管中,冰上静置10min。离心4℃,2500×g,5min。弃上清液,加入4mL 0.1mol/L CaCl2,冰上重悬后静置10min。离心4℃,2500×g,5min。弃上清,加入2mL 0.1mol/L CaCl2(溶液中含终浓度为15%的甘油),重悬沉淀,冰上静置30min,获得E.coil ET12567/puz8002大肠杆菌感受态细胞。分装100μL/tube,-80℃保藏。Take the E.coil ET12567/puz8002 E.coli bacterial solution from the glycerol cryopreservation tube of the strain and streak it on the LB plate, and cultivate it at 37°C until a single colony grows. Pick a single colony on the plate and transfer it to 2-5 mL of LB medium for overnight culture at 37°C and 200 rpm. Take 200 μL of the overnight cultured bacterial solution and add it to 20 mL of LB medium at 37° C. and cultivate at 200 rpm until the OD600 is 0.4 to 0.7. The cultured bacterial solution was transferred to a pre-cooled 50 mL centrifuge tube and placed on ice for 10 min. Centrifuge at 4°C, 2500×g, 5min. Discard the supernatant, add 4 mL of 0.1 mol/L CaCl 2 , resuspend on ice and let stand for 10 min. Centrifuge at 4°C, 2500×g, 5min. The supernatant was discarded, 2 mL of 0.1 mol/L CaCl 2 was added (the solution contained glycerol with a final concentration of 15%), the pellet was resuspended, and allowed to stand on ice for 30 min to obtain E.coil ET12567/puz8002 E. coli competent cells. Aliquot 100μL/tube and store at -80°C.
含重组载体pJTU1278-acc1-acc2-amphA-mcm-mme的E.coil ET12567/puz8002供体菌的制备:Preparation of E.coil ET12567/puz8002 donor strain containing recombinant vector pJTU1278-acc1-acc2-amphA-mcm-mme:
取1支上述的E.coil ET12567/puz8002大肠杆菌感受态细胞,冰浴5min,加入5μL浓度为200ng/μL的pJTU1278-TYB1-TYB2载体质粒,冰浴30min,于42℃水浴,热激90s,放回冰浴1min,加入600μL LB液体培养基,37℃,200rpm,培养1h。吸取200μL,均匀涂布于Kan+(终浓度50μg/mL)、Cm+(终浓度50μg/mL)、Amp+(终浓度50μg/mL)抗性的LB固体平板,于37℃培养箱培养14h。至长出含重组载体pJTU1278-acc1-acc2-amphA-mcm-mme的E.coilET12567/puz8002单菌落。Take 1 E.coil ET12567/puz8002 E. coli competent cell, ice-bath for 5min, add 5μL of pJTU1278-TYB1-TYB2 vector plasmid with a concentration of 200ng/μL, ice-bath for 30min, water bath at 42°C, heat shock for 90s, Put it back in the ice bath for 1 min, add 600 μL of LB liquid medium, and incubate for 1 h at 37° C., 200 rpm. Pipette 200 μL, spread evenly on Kan+ (
M13验证PCR体系:挑取单菌落,加入20μL无菌水,沸水浴5~10min,12000rpm离心1min。取1μL上清液作为模板,加入10×pfu Buffer 1μL,dNTP(2.5mM)0.1μL,M13正反引物各0.1μL,pfu DNA聚合酶0.1μL,补足去离子水至10μL。M13 verification PCR system: pick a single colony, add 20 μL of sterile water, take a boiling water bath for 5-10 min, and centrifuge at 12,000 rpm for 1 min. Take 1 μL of the supernatant as a template, add 1 μL of 10×pfu Buffer, 0.1 μL of dNTP (2.5 mM), 0.1 μL of M13 forward and reverse primers, 0.1 μL of pfu DNA polymerase, and make up to 10 μL of deionized water.
M13验证PCR程序:98℃变性10s,55~60℃退火15s,72℃延伸8min,共30个循环。最后72℃延伸10min。M13 verification PCR program: denaturation at 98°C for 10s, annealing at 55-60°C for 15s, and extension at 72°C for 8 min, a total of 30 cycles. A final extension at 72°C for 10 min.
M13引物如下:M13 primers are as follows:
将已导入pJTU1278-acc1-acc2-amphA-mcm-mme质粒的ET12567/puz8002大肠杆菌,划线分离单菌落,37℃培养,挑单菌落于装有5mL LB培养基试管,并同时加入Kan+(终浓度50μg/mL)、Cm+(终浓度50μg/mL)、Amp+(终浓度50μg/mL)抗生素,37℃培养14h。转接500μL于50mL LB摇瓶中,同时加入Kan+(终浓度50μg/mL)、Cm+(终浓度50μg/mL)、Amp+(终浓度50μg/mL)抗性,37℃培养至OD600为0.35。用50mL离心管将供体菌离心,4000rpm,5min,再用50mLLB培养基洗两次,用5mL LB培养基重悬,4℃保存备用。The ET12567/puz8002 E. coli that had been introduced into the pJTU1278-acc1-acc2-amphA-mcm-mme plasmid was streaked to isolate a single colony, cultured at 37°C, and the single colony was picked into a test tube containing 5 mL of LB medium, and Kan + ( Final concentration of 50 μg/mL), Cm + (final concentration of 50 μg/mL), Amp + (final concentration of 50 μg/mL) antibiotics, cultured at 37°C for 14h. Transfer 500 μL into a 50 mL LB shake flask, and add Kan + (
其中LB培养基由以下方法制得:蛋白胨10g,酵母粉5g,氯化钠5g,自来水定容至1L,pH自然,121度灭菌20min。The LB medium is prepared by the following method: 10 g of peptone, 5 g of yeast powder, 5 g of sodium chloride, constant volume of tap water to 1 L, natural pH, and sterilization at 121 degrees for 20 minutes.
B)受体菌Streptomyces nodosus的制备B) Preparation of recipient strain Streptomyces nodosus
将实验室菌种的Streptomyces nodosus ZJB2016050-Re5接种在GYM平板或斜面培养物上,28℃生长10d,获得灰黑色的孢子,使用棉花棒将表面孢子洗脱至10mL 2×YT培养基中,将洗下的孢子悬液用含有棉花的注射器过滤,过滤后的孢子12000rpm,离心5min后去上清,加入10mL2×YT培养基重悬,12000rpm离心5min重新洗脱一次,最后用500μL2×YT培养基重悬。将重悬好的孢子在50℃热激15~20min后,常温下备用。Inoculate Streptomyces nodosus ZJB2016050-Re5 of laboratory strain on GYM plate or slant culture, grow at 28°C for 10 d, obtain gray-black spores, and use cotton swab to elute the surface spores into 10 mL of 2×YT medium. The washed spore suspension was filtered with a syringe containing cotton, and the filtered spores were centrifuged at 12,000 rpm for 5 min to remove the supernatant, resuspended in 10 mL of 2×YT medium, and re-eluted by centrifugation at 12,000 rpm for 5 min. Finally, use 500 μL of 2× YT medium. Resuspended. The resuspended spores were heat-shocked at 50°C for 15-20 min, and then used at room temperature.
其中2×YT培养基由以下方法制得:蛋白胨16g,酵母粉10g,氯化钠5g,自来水定容至1L,pH自然,121度灭菌20min。The 2×YT medium was prepared by the following method: peptone 16g, yeast powder 10g, sodium chloride 5g, tap water to 1L, natural pH, sterilization at 121 degrees for 20min.
GYM固体培养基配制方法:葡萄糖4g,酵母粉4g,麦芽提取物10g,碳酸钙2g,琼脂18g,自来水定容至1L,pH7.2,121度灭菌20min。GYM solid medium preparation method: glucose 4g, yeast powder 4g, malt extract 10g, calcium carbonate 2g, agar 18g, tap water to 1L, pH 7.2, sterilization at 121 degrees for 20min.
C)供、受体菌接合过程:C) Conjugation process of donor and recipient bacteria:
将步骤B)500μL热激完的孢子悬液与步骤A)500μL供体大肠杆菌悬液混合重悬后,6000rpm离心2min,去掉800μL上清液,剩余上清将沉淀重悬涂布在含有10mM氯化镁的MS固体培养基平板上。28℃培养20h后,涂布1mL含0.5mg萘碇酸和0.5mg硫链丝菌素抗生素的水溶液,继续28℃培养10天,至出现转化子。After mixing and resuspending 500 μL of the heat-shocked spore suspension in step B) and 500 μL of the donor E. coli suspension in step A), centrifuge at 6000 rpm for 2 min, remove 800 μL of the supernatant, and resuspend the remaining supernatant in a solution containing 10 mM. MgCl on MS solid medium plates. After culturing at 28°C for 20 hours, apply 1 mL of an aqueous solution containing 0.5 mg of naphthoric acid and 0.5 mg of thiostrepton antibiotic, and continue to culture at 28°C for 10 days until transformants appear.
将转化子在含有终浓度50μg/mL萘碇酸和终浓度50μg/mL卡那霉抗性的GYM固体平板上连续纯化3次,直至获得单一菌落,使用16S RNA上下游引物(16S-8和16S-1541)以及M13上下游引物(M13(-21)F、M13R)对转化子菌落PCR验证后,测序对比分析,证实质粒(pJTU1278-acc1-acc2-amphA-mcm-mme)已导入受体菌Streptomyces nodosusZJB2016050-Re5中,最终获得产AmB的基因工程菌,即重组结节链霉菌pJTU1278-TYB1-TYB2。通过几轮带抗性培养,加加入Kan+(终浓度50μg/mL)得到最终替换成功的菌种Streptomyces nodosus ZJB2016050-De5-pJTU1278-acc1-acc2-amphA-mcm-mme(即CCTCCNO:M2019341)。Transformants were serially purified 3 times on GYM solid plates containing a final concentration of 50 μg/mL naphthenic acid and kanamycin resistance at a final concentration of 50 μg/mL until a single colony was obtained, using 16S RNA upstream and downstream primers (16S-8 and 16S-1541) and M13 upstream and downstream primers (M13(-21)F, M13R) were verified by PCR on the transformant colonies, and the sequencing and comparison analysis confirmed that the plasmid (pJTU1278-acc1-acc2-amphA-mcm-mme) had been introduced into the receptor In the bacterium Streptomyces nodosus ZJB2016050-Re5, a genetically engineered bacterium producing AmB, namely recombinant Streptomyces nodosus pJTU1278-TYB1-TYB2, was finally obtained. Through several rounds of resistant culture, Kan + (
其中MS固体培养基由以下方法制得:黄豆粉20g,甘露醇20g,琼脂20g,自来水定容至1L,用氢氧化钠调至pH 7.2,121度灭菌20min。使用前加入终浓度10mM无菌氯化镁。The MS solid medium was prepared by the following method: soybean powder 20g, mannitol 20g, agar 20g, tap water to 1L, adjusted to pH 7.2 with sodium hydroxide, and sterilized at 121°C for 20min. Sterile magnesium chloride was added at a final concentration of 10 mM before use.
其中M13验证PCR操作如步骤A)所述。Wherein the M13 verification PCR operation is as described in step A).
其中16sRNA验证PCR体系:挑取单菌落,加入20μL无菌水,沸水浴30min,12000rpm离心1min。取3μL上清液作为模板,加入2×Phanta Max Buffer 5μL,dNTP(2.5mM)0.1μL,16S正反引物各0.1μL,Phanta Max DNA聚合酶0.1μL,补足去离子水至10μL。16sRNA verification PCR system: pick a single colony, add 20 μL sterile water, take a boiling water bath for 30 min, and centrifuge at 12000 rpm for 1 min. Take 3 μL of supernatant as template, add 5 μL of 2× Phanta Max Buffer, 0.1 μL of dNTP (2.5 mM), 0.1 μL of 16S forward and reverse primers, 0.1 μL of Phanta Max DNA polymerase, and make up to 10 μL of deionized water.
其中16S RNA验证PCR程序:98℃变性10s,55~60℃退火15s,72℃延伸1min 30s,共30个循环。最后72℃延伸10min。The 16S RNA verification PCR program was as follows: denaturation at 98°C for 10s, annealing at 55-60°C for 15s, and extension at 72°C for 1min 30s, a total of 30 cycles. A final extension at 72°C for 10 min.
实施例6:摇瓶发酵产AmBExample 6: Shake flask fermentation to produce AmB
(1)孢子悬液的制备:将实施例5制备的产AmB的重组结节链霉菌ZJB2016050-De5-pJTU1278-acc1-acc2-amphA-mcm-mme,接种至GYM平板,28℃培养7天,取颜色发灰黑色的孢子,使用棉花棒将表面孢子洗脱至10mL无菌水中,将洗下的孢子悬液用含有棉花的注射器过滤,过滤后的孢子12000rpm离心5min后去上清液,加入10mL无菌水重悬后,12000rpm离心5min重新洗脱一次,用5mL无菌水重悬作为孢子悬液。(1) Preparation of spore suspension: The AmB-producing recombinant Streptomyces tuberculosis ZJB2016050-De5-pJTU1278-acc1-acc2-amphA-mcm-mme prepared in Example 5 was inoculated onto a GYM plate and cultured at 28°C for 7 days. Take the gray-black spores, use a cotton swab to elute the surface spores into 10 mL of sterile water, filter the washed spore suspension with a syringe containing cotton, centrifuge the filtered spores at 12,000 rpm for 5 min, remove the supernatant, and add After resuspending in 10 mL of sterile water, centrifuge at 12,000 rpm for 5 min to re-elute once, and resuspend with 5 mL of sterile water as a spore suspension.
(2)种子液的制备:(2) Preparation of seed liquid:
将步骤(1)孢子悬液接种至种子培养基中,28℃,220rpm培养46h,获得种子液。The spore suspension of step (1) is inoculated into the seed medium, and cultured at 28° C. and 220 rpm for 46 hours to obtain seed liquid.
种子培养基按以下方法制得:蛋白胨20g,NaCl 8g,葡萄糖15g,酵母粉10g,CaCO31g,加水定容至1L,pH 7.0,121度灭菌20min。The seed medium was prepared as follows: peptone 20g, NaCl 8g, glucose 15g, yeast powder 10g, CaCO 3 1g, add water to make up to 1L, pH 7.0, sterilize at 121°C for 20min.
(3)发酵培养(3) Fermentation culture
500mL规格摇瓶装样50mL发酵培养基,发酵时按体积浓度2%接种种子液,28℃,220rpm发酵培养168h。A 500mL shake flask was filled with 50mL fermentation medium, and the seed liquid was inoculated at a concentration of 2% by volume during fermentation, and the fermentation was cultured at 28°C and 220rpm for 168h.
发酵培养基组成:葡萄糖70g/L,牛肉膏8g/L,大豆蛋白粉8g/L,棉子粉10g/L,CaCO3 10g/L,KH2PO4 0.2g/L,溶剂为自来水,pH 7.0,121度灭菌20min。Composition of fermentation medium: glucose 70g/L, beef extract 8g/L, soybean protein powder 8g/L, cottonseed powder 10g/L, CaCO 3 10g/L, KH 2 PO 4 0.2g/L, the solvent is tap water, pH 7.0, sterilize at 121 degrees for 20 minutes.
上述基因工程菌通过摇瓶发酵生产,按照实施例8方法检测,其中ZJB2016050-De5-pJTU1278-acc1-acc2-amphA-mcm-mme所得发酵液中AmB含量,为7.2g/L。The above-mentioned genetically engineered bacteria were produced by shaking flask fermentation and detected according to the method in Example 8, wherein the AmB content in the fermentation broth obtained from ZJB2016050-De5-pJTU1278-acc1-acc2-amphA-mcm-mme was 7.2 g/L.
实施例7:5L发酵罐发酵生产AmBExample 7: Production of AmB by fermentation in a 5L fermenter
将实施例5制备的产AmB基因工程菌(重组结节链霉菌ZJB2016050-De5-pJTU1278-acc1-acc2-amphA-mcm-mme)孢子悬液或斜面培养物接种种子培养基中,28℃,220rpm培养48h获得种子液。Inoculate the spore suspension or slant culture of the AmB-producing genetically engineered bacteria (recombinant Streptomyces tuberculosis ZJB2016050-De5-pJTU1278-acc1-acc2-amphA-mcm-mme) prepared in Example 5 into the seed medium, 28°C, 220rpm Seed liquid was obtained after culturing for 48h.
发酵条件:5L发酵罐中装发酵液量3L,接种量按体积浓度5%接种种子液,28℃,压力0.05MPa、通气比1.2vvm,转速400rpm,发酵培养100h,获得发酵液。Fermentation conditions: 3L of fermentation broth was placed in a 5L fermenter, and the inoculum was inoculated with seed liquid at a volume concentration of 5%, 28°C, pressure 0.05MPa, aeration ratio 1.2vvm, rotation speed 400rpm, and fermentation culture for 100h to obtain fermentation broth.
种子培养基按以下方法制得:蛋白胨20g,NaCl 8g,葡萄糖15g,酵母粉10g,CaCO31g,加水定容至1L,pH 7.0,121度灭菌20min。The seed medium was prepared as follows: peptone 20g, NaCl 8g, glucose 15g, yeast powder 10g, CaCO 3 1g, add water to make up to 1L, pH 7.0, sterilize at 121°C for 20min.
5L发酵罐发酵培养基组成:葡萄糖70g/L,牛肉膏8g/L,大豆蛋白粉8g/L,棉子粉10g/L,CaCO3 10g/L,KH2PO4 0.2g/L,溶剂为自来水,pH 7.0,121度灭菌20min。5L fermentation tank fermentation medium composition: glucose 70g/L, beef extract 8g/L, soybean protein powder 8g/L, cottonseed powder 10g/L, CaCO 3 10g/L, KH 2 PO 4 0.2g/L, the solvent is Tap water, pH 7.0, sterilized at 121 degrees for 20 minutes.
同样条件下,以重组结节链霉菌ZJB2016050(即CCTCC NO:M 2017426)为对照进行发酵培养。Under the same conditions, the recombinant Streptomyces tuberculosis ZJB2016050 (ie, CCTCC NO: M 2017426) was used as a control for fermentation culture.
比较实施例5制备的产AmB基因工程菌(重组结节链霉菌ZJB2016050-De5-pJTU1278-acc1-acc2-amphA-mcm-mme)与对照菌(结节链霉菌ZJB2016050)在5L罐发酵情况。上述基因工程菌通过5L罐发酵生产,按照实施例8方法检测,基因工程菌所得发酵液中AmB含量为16.0g/L,如图4所示,而对照菌株AmB产量为13.6g/L。The fermentation conditions of the AmB-producing genetically engineered bacteria (recombinant Streptomyces tuberculosis ZJB2016050-De5-pJTU1278-acc1-acc2-amphA-mcm-mme) prepared in Example 5 and the control bacteria (Streptomyces tuberculosis ZJB2016050) in a 5L tank were compared. The above-mentioned genetically engineered bacteria were produced by fermentation in a 5L tank, and detected according to the method in Example 8. The AmB content in the fermentation broth obtained from the genetically engineered bacteria was 16.0 g/L, as shown in Figure 4, while the control strain AmB yield was 13.6 g/L.
实施例8:AmB成品的制备Example 8: Preparation of AmB Finished Products
取实施例7方法获得的发酵液500L。将发酵液经板框过滤得湿菌丝,烘干,得到8.1kg干菌重,把烘干的菌丝投入萃取罐中,加入70L甲醇,降温至4℃,用盐酸调至pH 3.0,稳定一小时,过滤得滤液。滤液进入结晶罐,加入纯化水10L,用碱液调pH至6.0,升温至25℃,保温一小时,结晶完成,静置分层。过滤得固体物(即AmB结晶粉),不断加甲醇洗涤,除去杂质,最后烘干,粉碎,得AmB粗成品,粗成品通过实施例8所述液相色谱进行检测,产量为14.6g/L,产品纯度为94%以上。Take 500L of the fermentation broth obtained by the method in Example 7. The fermentation broth was filtered through the plate frame to obtain wet mycelium, dried to obtain 8.1kg dry bacteria weight, the dried mycelium was put into the extraction tank, 70L of methanol was added, the temperature was lowered to 4°C, and the pH was adjusted to 3.0 with hydrochloric acid to stabilize. One hour, the filtrate was filtered. The filtrate was put into the crystallization tank, 10 L of purified water was added, the pH was adjusted to 6.0 with lye, the temperature was raised to 25°C, and the temperature was kept for one hour. Filter to obtain solid (i.e. AmB crystalline powder), continuously add methanol for washing, remove impurities, finally dry and pulverize to obtain AmB crude product, the crude product is detected by liquid chromatography described in Example 8, and the output is 14.6g/L , the product purity is more than 94%.
实施例9:AmB的HPLC检测方法Example 9: HPLC detection method of AmB
取实施例5方法制备的发酵液,按发酵液:DMSO为1:9的体积比与DMSO混合,室温下萃取20~30分钟,12000rpm离心5min,取上清用0.45μm有机滤膜过膜后通过高效液相色谱(HPLC)检测。Take the fermentation broth prepared by the method in Example 5, mix it with DMSO at a volume ratio of fermentation broth:DMSO of 1:9, extract at room temperature for 20-30 minutes, centrifuge at 12,000 rpm for 5 minutes, take the supernatant and filter it with a 0.45 μm organic filter. Detection by high performance liquid chromatography (HPLC).
检测方法:色谱柱为C18柱(150×4.6mm),柱温25℃,流速1mL/min,进样量20μL,色谱保留时间30min,检测波长为405nm。AmB的出峰时间为26.9min。Detection method: The chromatographic column is a C18 column (150×4.6mm), the column temperature is 25°C, the flow rate is 1mL/min, the injection volume is 20μL, the chromatographic retention time is 30min, and the detection wavelength is 405nm. The peak time of AmB was 26.9 min.
其中流动相配制方法:1.1g EDTA-Na2和4.1g醋酸钠用蒸馏水定容至1L,取此溶液900mL与700mL乙腈、400mL甲醇混合,乙酸调至pH5.0;The mobile phase preparation method: 1.1g EDTA-Na 2 and 4.1g sodium acetate are diluted to 1L with distilled water, take 900mL of this solution, mix with 700mL acetonitrile and 400mL methanol, and adjust the pH to 5.0 with acetic acid;
AmB产量计算方法:从sigma公司购买AmB的标准品,用DMSO配制不同浓度(0mg/L、200mg/L、400mg/L、800mg/L、1000mg/L)的AmB标准溶液,分别将上述标准液用HPLC检测出峰面积,根据峰面积和AmB标准溶液的浓度计算出标准曲线为Y=0.0123X+2539.9,R2=0.999(其中Y为AmB的浓度,X为峰面积)。将未知浓度的AmB样品通过HPLC检测可以得到一个峰面积,带入上述标准曲线公式得出浓度,标准曲线结果如图5所示。Calculation method of AmB yield: Purchase the standard product of AmB from sigma company, prepare AmB standard solutions of different concentrations (0mg/L, 200mg/L, 400mg/L, 800mg/L, 1000mg/L) with DMSO, and mix the above standard solutions respectively. The peak area was detected by HPLC, and the standard curve calculated according to the peak area and the concentration of AmB standard solution was Y=0.0123X+2539.9, R 2 =0.999 (wherein Y is the concentration of AmB, and X is the peak area). A peak area can be obtained by detecting the AmB sample of unknown concentration by HPLC, and the concentration can be obtained by bringing it into the above standard curve formula. The result of the standard curve is shown in Figure 5.
序列表 sequence listing
<110> 浙江工业大学<110> Zhejiang University of Technology
<120> 一种高产两性霉素B的重组结节链霉菌及其应用<120> A high-yielding amphotericin B recombinant Streptomyces tuberculosis and its application
<160> 6<160> 6
<170> SIPOSequenceListing 1.0<170> SIPOSequenceListing 1.0
<210> 1<210> 1
<211> 1776<211> 1776
<212> DNA<212> DNA
<213> Streptomyces nodosus<213> Streptomyces nodosus
<400> 1<400> 1
tcagtccttg atctcgcaga tcgcggcgcc ggaggagagg gaggcgccga cctccgcggt 60tcagtccttg atctcgcaga tcgcggcgcc ggaggagagg gaggcgccga cctccgcggt 60
caggcccttg atcgtgccgg ctcggtgcgc gttgagcggc tgctccatct tcatggcctc 120caggcccttg atcgtgccgg ctcggtgcgc gttgagcggc tgctccatct tcatggcctc 120
caggacgacg accaggtcgc cctcctggac ctcctggccc tcctcgaccg cgaccttcac 180caggacgacg accaggtcgc cctcctggac ctcctggccc tcctcgaccg cgaccttcac 180
gatcgtgccc tgcatcgggg aggccagggt gtcgccggag accgagggac cggacttctt 240gatcgtgccc tgcatcgggg aggccagggt gtcgccggag accgagggac cggacttctt 240
cgccgcgcgc cgcttcggct tggcgcccgc cgccagaccc gtacgggcca gcgacatacc 300cgccgcgcgc cgcttcggct tggcgcccgc cgccagaccc gtacgggcca gcgacatacc 300
gagcgacgcg ggcagcgaca cctcgagacg cttgccgccg acctcgacca cgaccgtctc 360gagcgacgcg ggcagcgaca cctcgagacg cttgccgccg acctcgacca cgaccgtctc 360
acggcccgcc gggtcctcct cggcctccgc gtccgcggcc gccgcgaacg gcttgatctc 420acggcccgcc gggtcctcct cggcctccgc gtccgcggcc gccgcgaacg gcttgatctc 420
gttgacgaac tcggtctcga tccagcgggt gtggaccgtg aaggggccct cggagccggt 480gttgacgaac tcggtctcga tccagcgggt gtggaccgtg aaggggccct cggagccggt 480
cagttcgggc gcgaacgcgg tgtccctgac caccgcgcgg tggaacggga tcgccgtggc 540cagttcgggc gcgaacgcgg tgtccctgac caccgcgcgg tggaacggga tcgccgtggc 540
catcccctcg acctggaact cgtccagggc gcgggcggcc cgctccagag cctccttgcg 600catcccctcg acctggaact cgtccagggc gcgggcggcc cgctccagag cctccttgcg 600
ggtgcggccc gtcacgatca gcttggccag cagggagtcc cacgccgggc cgatgaccga 660ggtgcggccc gtcacgatca gcttggccag cagggagtcc cacgccgggc cgatgaccga 660
acccgactcc acacccgcgt ccagccgcac accggggccg gacggcggag cgaacgcggt 720acccgactcc acacccgcgt ccagccgcac accggggccg gacggcggag cgaacgcggt 720
caccgtgccg ggggcgggca ggaagccccg gcccgggtcc tcgccgttga tccggaactc 780caccgtgccg ggggcgggca ggaagccccg gcccgggtcc tcgccgttga tccggaactc 780
gaaggaatgg ccgcgcagtt cggggtcgtc atagcccagt tcctcgccgt cggcgatacg 840gaaggaatgg ccgcgcagtt cggggtcgtc atagcccagt tcctcgccgt cggcgatacg 840
gaacatctca cggaccaggt cgatgccggc gacctcctcg gtgaccgggt gctcgacctg 900gaacatctca cggaccaggt cgatgccggc gacctcctcg gtgaccgggt gctcgacctg 900
gagccgggtg ttgacctcca ggaaggagat cgtcccgtcg ttgccgacca ggaactccac 960gagccgggtg ttgacctcca ggaaggagat cgtcccgtcg ttgccgacca ggaactccac 960
cgtgcccgcg cccacatagc cggcctcctt gaggatggcc ttggacgccg agtacagctc 1020cgtgcccgcg cccacatagc cggcctcctt gaggatggcc ttggacgccg agtacagctc 1020
ggcgacctgc ccgtccgaca ggaacggcgc gggggcctcc tcgaccagct tctggtggcg 1080ggcgacctgc ccgtccgaca ggaacggcgc gggggcctcc tcgaccagct tctggtggcg 1080
ccgctgcagc gagcagtcac gggtggagac caccacgacg ttgccgtgcc ggtcggccag 1140ccgctgcagc gagcagtcac gggtggagac caccacgacg ttgccgtgcc ggtcggccag 1140
gcactgtgtc tccacgtgcc ggggccggtc cagatagcgc tccacgaagc actcgccacg 1200gcactgtgtc tccacgtgcc ggggccggtc cagatagcgc tccacgaagc actcgccacg 1200
gccgaaggcg gcgaccgcct cacggaccgc cgactcgtac agctcgggga tctcctccag 1260gccgaaggcg gcgaccgcct cacggaccgc cgactcgtac agctcgggga tctcctccag 1260
ggtgcgggcc accttcagac cgcgcccgcc accgccgaag gcggccttga tcgcgatcgg 1320ggtgcgggcc accttcagac cgcgcccgcc accgccgaag gcggccttga tcgcgatcgg 1320
caggccgtgc tcctcggcga aggtgacgac ctcgtcggcg ccggacaccg ggtcgggcgt 1380caggccgtgc tcctcggcga aggtgacgac ctcgtcggcg ccggacaccg ggtcgggcgt 1380
accggcgacc aggggggcac ccgcgcgctg cgcgatgtgc cgggccgcga ccttgtcacc 1440accggcgacc aggggggcac ccgcgcgctg cgcgatgtgc cgggccgcga ccttgtcacc 1440
gagatcgcgg atggcctgcg gcggcgggcc gatccagatc agaccggcgt ccaggacggc 1500gagatcgcgg atggcctgcg gcggcgggcc gatccagatc agaccggcgt ccaggacggc 1500
ctgggcgaag tcggcgttct cggagaggaa accgtagccg gggtggatgg cgtccgcgcc 1560ctgggcgaag tcggcgttct cggagaggaa accgtagccg gggtggatgg cgtccgcgcc 1560
ggaatccttg gccgcctgaa ggaccttgtc gatgtccagg taactggtgg cgggcgtgtc 1620ggaatccttg gccgcctgaa ggaccttgtc gatgtccagg taactggtgg cgggcgtgtc 1620
tcctcccagg gcgaacgcct cgtccgcggc gcggacgtgc agggcgtccc ggtccgggtc 1680tcctcccagg gcgaacgcct cgtccgcggc gcggacgtgc agggcgtccc ggtccgggtc 1680
ggcgtagacg gccacgctcg cgatcccggc gtcacgacag gcccgggcga cacggacagc 1740ggcgtagacg gccacgctcg cgatcccggc gtcacgacag gcccgggcga cacggacagc 1740
gatttcgcca cggttggcga tcaacacctt gcgcac 1776gatttcgcca cggttggcga tcaacacctt gcgcac 1776
<210> 2<210> 2
<211> 1941<211> 1941
<212> DNA<212> DNA
<213> Streptomyces nodosus<213> Streptomyces nodosus
<400> 2<400> 2
atgtttgaca cggtgctcgt ggccaaccgg ggcgagatcg cggtccgggt cgtccgcacc 60atgtttgaca cggtgctcgt ggccaaccgg ggcgagatcg cggtccgggt cgtccgcacc 60
ctgcgcgcgc tcggggtgcg ttcggtggcc gtcttctccg acgcggacgc cgacgcccgg 120ctgcgcgcgc tcggggtgcg ttcggtggcc gtcttctccg acgcggacgc cgacgcccgg 120
cacgtccggg aggccgacac ggcggtacgg atcggaccgg cgcccgcagc cgagagctat 180cacgtccggg aggccgacac ggcggtacgg atcggaccgg cgcccgcagc cgagagctat 180
ctgtccgtcg agcggctcct cgcggcggcg gcccgcaccg gcgcccaggc ggtgcacccg 240ctgtccgtcg agcggctcct cgcggcggcg gcccgcaccg gcgcccaggc ggtgcacccg 240
ggatacggct tcctcgcgga gaacgccgcc ttcgcgaagg cgtgcgcgga ggcggggctg 300ggatacggct tcctcgcgga gaacgccgcc ttcgcgaagg cgtgcgcgga ggcggggctg 300
gtcttcatcg ggccgcccgc cgaggcgatc tccctcatgg gcgacaagat ccgcgccaag 360gtcttcatcg ggccgcccgc cgaggcgatc tccctcatgg gcgacaagat ccgcgccaag 360
gagacggtgc gggcggccgg ggtgccggtc gtcccgggct ccgacggcag cgggctgacg 420gagacggtgc gggcggccgg ggtgccggtc gtcccgggct ccgacggcag cgggctgacg 420
gacgagcagc tggccgaggc ggcccacacc atcggcatgc cggtgctgct gaagccgagc 480gacgagcagc tggccgaggc ggcccacacc atcggcatgc cggtgctgct gaagccgagc 480
gccggcgggg gcggcaaggg catgcggctg gtgcgggagc cggagcggct ggccgaggag 540gccggcgggg gcggcaaggg catgcggctg gtgcgggagc cggagcggct ggccgaggag 540
atcgccgcgg cccgccgtga ggcccgcgcc tccttcggcg acgacacgct cctggtcgag 600atcgccgcgg cccgccgtga ggcccgcgcc tccttcggcg acgacacgct cctggtcgag 600
cgctggatcg accggccccg gcatatcgag atccaggtcc tggccgactc ccacgggaac 660cgctggatcg accggccccg gcatatcgag atccaggtcc tggccgactc ccacgggaac 660
gtggtgcatc tgggcgagcg cgagtgctcc ctccagcgcc gccaccagaa gctcatcgag 720gtggtgcatc tgggcgagcg cgagtgctcc ctccagcgcc gccaccagaa gctcatcgag 720
gaggcgccca gtgtgttcct cgacgaggcc acccgtgcgg cgatgggcga ggcggcggtc 780gaggcgccca gtgtgttcct cgacgaggcc acccgtgcgg cgatgggcga ggcggcggtc 780
caggcggccc gctcctgcgg ctaccggggc gcgggcacgg tggagttcat cgtcccgggc 840caggcggccc gctcctgcgg ctaccggggc gcgggcacgg tggagttcat cgtcccgggc 840
aacgacccct ccgcctatta cttcatggag atgaacaccc gcctccaggt ggaacacccg 900aacgacccct ccgcctatta cttcatggag atgaacaccc gcctccaggt ggaacacccg 900
gtcaccgagc tggtcaccgg cctggacctg gtggaatggc agctgcgggt ggcggcgggc 960gtcaccgagc tggtcaccgg cctggacctg gtggaatggc agctgcgggt ggcggcgggc 960
gagccgctgt ccttcgggca ggacgacatc acgctcaccg ggcacgccgt ggaggcgcgg 1020gagccgctgt ccttcgggca ggacgacatc acgctcaccg ggcacgccgt ggaggcgcgg 1020
atctgcgccg aggaccccgc ccgcggcttc ctcccctccg gcggcacggt gctcgcgctg 1080atctgcgccg aggaccccgc ccgcggcttc ctcccctccg gcggcacggt gctcgcgctg 1080
cacgaaccgg ggggcgacgg cctccgcacc gactcgggcc tgtccgaggg caccgaggtc 1140cacgaaccgg ggggcgacgg cctccgcacc gactcgggcc tgtccgaggg caccgaggtc 1140
ggcagcctct acgacccgat gctgtccaag gtcatcgccc acggccccga ccgggcgacc 1200ggcagcctct acgacccgat gctgtccaag gtcatcgccc acggccccga ccgggcgacc 1200
gcgctgcgca gactgcgcgc ggccctcggg gagaccgtca ccctgggcgt ggggaccaac 1260gcgctgcgca gactgcgcgc ggccctcggg gagaccgtca ccctgggcgt ggggaccaac 1260
gccggttttc tgcgccggct gctggcccat cccgcggtcg tggcgggcga actggacacc 1320gccggttttc tgcgccggct gctggcccat cccgcggtcg tggcgggcga actggacacc 1320
gggctggtgg aacgcgaggc ggacggcctc atcccggagg gggtgccgga ggaggtgtac 1380gggctggtgg aacgcgaggc ggacggcctc atcccggagg gggtgccgga ggaggtgtac 1380
gaggccgccg ccgccgtgcg cctggacgca ctgcggcccc ggggcgaggg ctggaccgac 1440gaggccgccg ccgccgtgcg cctggacgca ctgcggcccc ggggcgaggg ctggaccgac 1440
ccgttctcgg tgccggacgg ctggcgcctc ggcggcgagc ccgcgcccct gtccttcccc 1500ccgttctcgg tgccggacgg ctggcgcctc ggcggcgagc ccgcgcccct gtccttcccc 1500
ctgcgggtgt ccgaaccggt ggagtactcc ccccggggca cccacacggt caccgaggac 1560ctgcgggtgt ccgaaccggt ggagtactcc ccccggggca cccacacggt caccgaggac 1560
cgggtgtccg tggtgctgga cggggtgcgg cacaccttcc accgcgccgc cgactggctc 1620cgggtgtccg tggtgctgga cggggtgcgg cacaccttcc accgcgccgc cgactggctc 1620
ggccgggacg gcgacgcctg gcaggtgcgc gaccatgacc cggtcgccgc ctcgctcacc 1680ggccgggacg gcgacgcctg gcaggtgcgc gaccatgacc cggtcgccgc ctcgctcacc 1680
ggcgccgccc gagccggcac cgactcgctg accgcgccca tgcccggcac ggtcaccgtg 1740ggcgccgccc gagccggcac cgactcgctg accgcgccca tgcccggcac ggtcaccgtg 1740
gtgaaggtcg ccgtcgggga cgaggtggcc gcagggcaga gcctgctggt ggtcgaggcg 1800gtgaaggtcg ccgtcgggga cgaggtggcc gcagggcaga gcctgctggt ggtcgaggcg 1800
atgaagatgg agcacgtcat ctccgcgccg cacgccggga ccgtcgccga actcgacgtc 1860atgaagatgg agcacgtcat ctccgcgccg cacgccggga ccgtcgccga actcgacgtc 1860
accccgggca ccacggtggt catggaccag gtgctggccg tgatcacccc gcacgaggag 1920accccgggca ccacggtggt catggaccag gtgctggccg tgatcacccc gcacgaggag 1920
cacacggagg cggagcgatg a 1941cacacggagg cggagcgatg a 1941
<210> 3<210> 3
<211> 4239<211> 4239
<212> DNA<212> DNA
<213> Streptomyces nodosus<213> Streptomyces nodosus
<400> 3<400> 3
atgacgatcg gagccaacga cgatccggta gtggtcgtcg gaatggcctg ccgcttcccg 60atgacgatcg gagccaacga cgatccggta gtggtcgtcg gaatggcctg ccgcttcccg 60
ggaggcgtcg aggggcccga ggacctgtgg gagctggtcc gcgacggccg cgacgccacc 120ggaggcgtcg aggggcccga ggacctgtgg gagctggtcc gcgacggccg cgacgccacc 120
gggccgttcc ccggcgaccg cggctgggac ctggccgccc tgaccggcga cgggccggac 180gggccgttcc ccggcgaccg cggctgggac ctggccgccc tgaccggcga cgggccggac 180
cacagcgtga cccaccgagg cggattcctc gccgcggccg ccgacttcga cgccggcttc 240cacagcgtga cccaccgagg cggattcctc gccgcggccg ccgacttcga cgccggcttc 240
ttcgggatgt cgccccgcga ggccgtctcc accgacccgc agcagcggct cgtcctggag 300ttcgggatgt cgccccgcga ggccgtctcc accgacccgc agcagcggct cgtcctggag 300
acctcctggg aggccctgga acacgccggc atcgacccgc acaccctgcg gggcacccgc 360acctcctggg aggccctgga acacgccggc atcgacccgc acaccctgcg gggcacccgc 360
accggcgtct tcgtcggcac caacggccag gactacgcga ccgtcaccaa cgcctcccgc 420accggcgtct tcgtcggcac caacggccag gactacgcga ccgtcaccaa cgcctcccgc 420
gaggacctca ccgggcacgc cctcaccggt ctgtcgccga gcatcgcctc cgggaggctc 480gaggacctca ccgggcacgc cctcaccggt ctgtcgccga gcatcgcctc cgggaggctc 480
gcctacttcc tcggcctcga agggcccgcc gtcaccctcg acacggcgtc ctcctcgtcc 540gcctacttcc tcggcctcga agggcccgcc gtcaccctcg acacggcgtc ctcctcgtcc 540
ctggtcgccc tccactacgc gctgcgctcg ctcaggtcgg gggagtgcac caccgcgctg 600ctggtcgccc tccactacgc gctgcgctcg ctcaggtcgg gggagtgcac caccgcgctg 600
gccggcggcg tcaccgtgat gtccacaccg gtcgggttca tcgcctacac ccggcagggc 660gccggcggcg tcaccgtgat gtccacaccg gtcgggttca tcgcctacac ccggcagggc 660
ggactcgccg ccgacggccg ctgcaaggtc ttctccgacg acgccgacgg caccacctgg 720ggactcgccg ccgacggccg ctgcaaggtc ttctccgacg acgccgacgg caccacctgg 720
gcggagggcg ccggcatgat cgtgctggag cgcctgtcca ccgcccgcgc cgccgggcac 780gcggagggcg ccggcatgat cgtgctggag cgcctgtcca ccgcccgcgc cgccgggcac 780
cgggtgctcg ccgtgctgcg cggctccgcc gtcaaccagg acggcgcctc cgacggtctc 840cgggtgctcg ccgtgctgcg cggctccgcc gtcaaccagg acggcgcctc cgacggtctc 840
accgccccca gcggaccggc ccaggaacga ctcgtccgcg aggccctcgc cgacgccgga 900accgccccca gcggaccggc ccaggaacga ctcgtccgcg aggccctcgc cgacgccgga 900
ctcggacccg ccgacatcga cctcgtcgag gcccacggca ccggcacccg gctcggcgac 960ctcggacccg ccgacatcga cctcgtcgag gcccacggca ccggcacccg gctcggcgac 960
cccatcgagg cccgggccct gctcgccacc tacggccagg accgcgacgg cggacagccg 1020cccatcgagg cccgggccct gctcgccacc tacggccagg accgcgacgg cggacagccg 1020
ctgcgcctcg gctccctgaa gtccaacatc gggcacgccc aggcagccgc cggcatcggc 1080ctgcgcctcg gctccctgaa gtccaacatc gggcacgccc aggcagccgc cggcatcggc 1080
ggactcatca aggccgtcca ggcgctgcgc cacggcctga tgccggagac cctgaacctc 1140ggactcatca aggccgtcca ggcgctgcgc cacggcctga tgccggagac cctgaacctc 1140
tccacgccca cccggcacgt cgactggtcg gccggcgccg tcgaactcct caccgaggcc 1200tccacgccca cccggcacgt cgactggtcg gccggcgccg tcgaactcct caccgaggcc 1200
ctgccctggc ccggcaccgg ccgcccgcgc cgggccgccg tctcctcctt cggcatcagt 1260ctgccctggc ccggcaccgg ccgcccgcgc cgggccgccg tctcctcctt cggcatcagt 1260
ggcaccaacg cgcatgtcat cgtggaggaa gccccgacga ccgaccccgc cgccgcggtc 1320ggcaccaacg cgcatgtcat cgtggaggaa gccccgacga ccgaccccgc cgccgcggtc 1320
cccgccgggc ccgcccaccg ggacgtggcc tcggccgccg actccgccgc gcggcccgct 1380cccgccgggc ccgcccaccg ggacgtggcc tcggccgccg actccgccgc gcggcccgct 1380
gccctcgccg gggagcccgc cgacacctct gctcccgccg ctgtcgacgc cggcccggcc 1440gccctcgccg gggagcccgc cgacacctct gctcccgccg ctgtcgacgc cggcccggcc 1440
gaccgcccgg tcacccccgc cgctcggctc gccgccctcg tgcccgcggc cgacgccgtc 1500gaccgcccgg tcacccccgc cgctcggctc gccgccctcg tgcccgcggc cgacgccgtc 1500
gcgtggccgg tgtccggggc ctccccggag gctctcgacg cgcaggtcga gcggctcacc 1560gcgtggccgg tgtccggggc ctccccggag gctctcgacg cgcaggtcga gcggctcacc 1560
tccttcgtcc gggaccaccc cggcgccgat ccgctggaca tcggtcactc gctggccacc 1620tccttcgtcc gggaccaccc cggcgccgat ccgctggaca tcggtcactc gctggccacc 1620
gggcgggcgg cgttgcggca ccgtgcggtg ctggtgccgt ccggtgacgg tgtcgtggag 1680gggcgggcgg cgttgcggca ccgtgcggtg ctggtgccgt ccggtgacgg tgtcgtggag 1680
atcgcccgcg gtgaggccgc cccccgcacc accgccgtcc tcttctccgg acagggctcc 1740atcgcccgcg gtgaggccgc cccccgcacc accgccgtcc tcttctccgg acagggctcc 1740
cagcggctcg gcatgggccg tgaactcgcc gcccgcttcc cggtcttcgc gaaggccctg 1800cagcggctcg gcatgggccg tgaactcgcc gcccgcttcc cggtcttcgc gaaggccctg 1800
gacaccgtcc tggccgccct cgacccccaa ctcgagcgtc cggtgcggtc cgtgatgtgg 1860gacaccgtcc tggccgccct cgacccccaa ctcgagcgtc cggtgcggtc cgtgatgtgg 1860
ggcgaggacc ccgccgaact cgaccgcacc gggtggaccc agcccgcgct gttcgccttc 1920ggcgaggacc ccgccgaact cgaccgcacc gggtggaccc agcccgcgct gttcgccttc 1920
gaggtcgccc tgtaccggct cgccgagtcc ttcgggctgc gccccgacgc cgtcggcggc 1980gaggtcgccc tgtaccggct cgccgagtcc ttcgggctgc gccccgacgc cgtcggcggc 1980
cactccgtcg gcgagatcgc cgccgcgcac atcgccggag tgctctcgct ggaggacgcc 2040cactccgtcg gcgagatcgc cgccgcgcac atcgccggag tgctctcgct ggaggacgcc 2040
gcgcgtctgg tcgccgcccg cgccaccctg atgcaggccc tgcccgaggg cggcgccatg 2100gcgcgtctgg tcgccgcccg cgccaccctg atgcaggccc tgcccgaggg cggcgccatg 2100
tccgccgtcg aggcctccga ggacgaggtg ctcccgctgc tcgacggcga tgtctcgctc 2160tccgccgtcg aggcctccga ggacgaggtg ctcccgctgc tcgacggcga tgtctcgctc 2160
gccgccgtca acggccccac cgcggtcgtc gtctccggcg ccgaggacgc cgtggagcgc 2220gccgccgtca acggccccac cgcggtcgtc gtctccggcg ccgaggacgc cgtggagcgc 2220
gtctccgccc acttcgctgc ccaaggccgc cgcaccagcc gcctcgcggt ctcgcacgcc 2280gtctccgccc acttcgctgc ccaaggccgc cgcaccagcc gcctcgcggt ctcgcacgcc 2280
ttccactcgc cgctgatgga gccgatgctc gacgccttcc gggacgtcgt cgccggactc 2340ttccactcgc cgctgatgga gccgatgctc gacgccttcc gggacgtcgt cgccggactc 2340
accttccatg agccgacgct gccggtgatg tccaacctca ccggtgaact tgccggtgcc 2400accttccatg agccgacgct gccggtgatg tccaacctca ccggtgaact tgccggtgcc 2400
gagatcgcca cccccgagta ctgggtgcgg catgtgcgcg gtaccgtccg cttcgccgac 2460gagatcgcca cccccgagta ctgggtgcgg catgtgcgcg gtaccgtccg cttcgccgac 2460
ggcgtgacgg ccctgcggga acacggcacc gacctgctgg tcgaactggg ccccggcagc 2520ggcgtgacgg ccctgcggga acacggcacc gacctgctgg tcgaactggg ccccggcagc 2520
gtcctgaccg ccctcgcccg caccgtcctc ggcccggaca ccccgggcgc ccctgtcgac 2580gtcctgaccg ccctcgcccg caccgtcctc ggcccggaca ccccgggcgc ccctgtcgac 2580
gtggtgccca ccctccgcaa ggaccagccc gaggagaggg ctctcaccgc cgcgctcggc 2640gtggtgccca ccctccgcaa ggaccagccc gaggagaggg ctctcaccgc cgcgctcggc 2640
cggctccatg tcctcggcgc gaccgtcgac tggtccgccc tctacaccgg caccggagcc 2700cggctccatg tcctcggcgc gaccgtcgac tggtccgccc tctacaccgg caccggagcc 2700
cgccgcaccg acctgccgac gtacgccttc cagcacgcgc ggtactggcc cgccccgggc 2760cgccgcaccg acctgccgac gtacgccttc cagcacgcgc ggtactggcc cgccccgggc 2760
cggcccggca ccggtaccgc gggcggcggg catccgctgc tcggcccggc cgtggaactc 2820cggcccggca ccggtaccgc gggcggcggg catccgctgc tcggcccggc cgtggaactc 2820
gccgacggcg gcacggtgtc gggcgccaca ctgtccgtcg ccacccaccc ctggctcgcc 2880gccgacggcg gcacggtgtc gggcgccaca ctgtccgtcg ccacccaccc ctggctcgcc 2880
gaccatgtcg tcgccgggcg cgtcctgctg cccgccgccg tgctcgtgga actcgccgta 2940gaccatgtcg tcgccgggcg cgtcctgctg cccgccgccg tgctcgtgga actcgccgta 2940
cgcgcgggtg acgacaccgg atgcgacgtc ctgcacgaac tcgccctcgt cgaggcgccg 3000cgcgcgggtg acgacaccgg atgcgacgtc ctgcacgaac tcgccctcgt cgaggcgccg 3000
gtcctggagg ccggcgacac cctggacctc caggtccggg tcggctccgc cgacgaggcc 3060gtcctggagg ccggcgacac cctggacctc caggtccggg tcggctccgc cgacgaggcc 3060
ggccggcgca ccctcaccgt ccactcccgt cccggcaact cccccgccga gccctggacc 3120ggccggcgca ccctcaccgt ccactcccgt cccggcaact cccccgccga gccctggacc 3120
cagcgggccg gcggcctgct cggcaccgcg ccccgcaccg cggcggcccc cgacacctcc 3180cagcgggccg gcggcctgct cggcaccgcg ccccgcaccg cggcggcccc cgacacctcc 3180
ttcgccgtcg cctggccccc gccgggcgcc gaacccctcg acctcgggga ccactacgag 3240ttcgccgtcg cctggccccc gccgggcgcc gaacccctcg acctcgggga ccactacgag 3240
cggctcgtcg acgacggctt cgacctcggc cccgccttcc gcggtctgcg caccgcctgg 3300cggctcgtcg acgacggctt cgacctcggc cccgccttcc gcggtctgcg caccgcctgg 3300
cgccacgacg gcgcgttcct cgccgaggtc gaactcccgg ccggcaccac cgacgacccc 3360cgccacgacg gcgcgttcct cgccgaggtc gaactcccgg ccggcaccac cgacgacccc 3360
ggcgcctacg gagtgcaccc cgcgctcctc gacgccgccc ggcacgccgc cctcaccacc 3420ggcgcctacg gagtgcaccc cgcgctcctc gacgccgccc ggcacgccgc cctcaccacc 3420
accggcacac tcccggtcgc ctggcacggg gtgcggctgc acgccgtcgg cgccaccgcc 3480accggcacac tcccggtcgc ctggcacggg gtgcggctgc acgccgtcgg cgccaccgcc 3480
ctgcgggtgc ggatccactc cgccgacgac ggtgccctga ccctgaccgc cgccgatgtc 3540ctgcgggtgc ggatccactc cgccgacgac ggtgccctga ccctgaccgc cgccgatgtc 3540
accggcgccc cggtgttcac cgccgaggcc gtcgtcgtac ggcagctcac cgagcaggag 3600accggcgccc cggtgttcac cgccgaggcc gtcgtcgtac ggcagctcac cgagcaggag 3600
cgcaccgccc cccggccgct cacacgcgcc tggcaccagg acaccgcgac cccgcgccgc 3660cgcaccgccc cccggccgct cacacgcgcc tggcaccagg acaccgcgac cccgcgccgc 3660
acccggcccg tcgccgcggc ccccggcgcc gccgccgagc cgtccgcctc ctcggcgccg 3720acccggcccg tcgccgcggc ccccggcgcc gccgccgagc cgtccgcctc ctcggcgccg 3720
gacagcttcg ccgccgaggc cgcggccctg gcccccgccg agcgtgaacg ccggctcatc 3780gacagcttcg ccgccgaggc cgcggccctg gccccccgccg agcgtgaacg ccggctcatc 3780
ggcctggtac ggacccaggc ggcggcggtc ctcggccatc agggcccgga cgcggtcgga 3840ggcctggtac ggacccaggc ggcggcggtc ctcggccatc agggcccgga cgcggtcgga 3840
ccccgcgcgg tcttcaagga gctgggcttc gactcgctgg ccggcgtgga actcagtgac 3900ccccgcgcgg tcttcaagga gctgggcttc gactcgctgg ccggcgtgga actcagtgac 3900
cgcctcaccg cgctcaccgg actgcggctg ccggccaccc tcgtcttcaa cttccccacc 3960cgcctcaccg cgctcaccgg actgcggctg ccggccaccc tcgtcttcaa cttccccacc 3960
cccgagctcg ccgcccggcg tatcggggaa ctcctcgtcg tatccggctc ctcaccgcag 4020cccgagctcg ccgcccggcg tatcggggaa ctcctcgtcg tatccggctc ctcaccgcag 4020
ggatcgtgcg acgacgaact caccaggttc gaggccgtcg tgcagaccct gtcggccgac 4080ggatcgtgcg acgacgaact caccaggttc gaggccgtcg tgcagaccct gtcggccgac 4080
gaccccggac gccaggccgt cgccgaccgc ctggacgcac tcgtcgcctc gctccggcgg 4140gaccccggac gccaggccgt cgccgaccgc ctggacgcac tcgtcgcctc gctccggcgg 4140
aattccgccc cgcaggagaa cttctccgac gaggacatcg aatcggtgtc ggtcgacaga 4200aattccgccc cgcaggagaa cttctccgac gaggacatcg aatcggtgtc ggtcgacaga 4200
ctgctcgaca tcatcgatga agagttcgaa atctcctag 4239ctgctcgaca tcatcgatga agagttcgaa atctcctag 4239
<210> 4<210> 4
<211> 1737<211> 1737
<212> DNA<212> DNA
<213> Streptomyces nodosus<213> Streptomyces nodosus
<400> 4<400> 4
atggacgctg acgccatcgc ggagggccgc cgacgctggc aggcccgtta tgacgccgca 60atggacgctg acgccatcgc ggagggccgc cgacgctggc aggcccgtta tgacgccgca 60
cgcacgcgtg aggcggccgg gggctccgag gcgaaacccc cgaggagctg gacgcgcacc 120cgcacgcgtg aggcggccgg gggctccgag gcgaaacccc cgaggagctg gacgcgcacc 120
acgctctccg gcgaccccgt ggagcccgtg tacgggcccc ggcccaccga cagctacgag 180acgctctccg gcgaccccgt ggagcccgtg tacgggcccc ggcccaccga cagctacgag 180
ggcttcgagc ggatcggctg gccgggcgag taccccttca cccgcggtct gtatccgacc 240ggcttcgagc ggatcggctg gccgggcgag taccccttca cccgcggtct gtatccgacc 240
ggctaccggg gccggagctg gaccgtccgc cagttcgccg ggttcgggaa cgccgagcag 300ggctaccggg gccggagctg gaccgtccgc cagttcgccg ggttcgggaa cgccgagcag 300
accaatgagc gcttcaaggc gatcctggag gccggcggcg gaggcctgag cgtcgccttc 360accaatgagc gcttcaaggc gatcctggag gccggcggcg gaggcctgag cgtcgccttc 360
gacatgccga cgctgatggg ccgcgactcc gacgatccgc gctccctggg cgaggtcggg 420gacatgccga cgctgatggg ccgcgactcc gacgatccgc gctccctggg cgaggtcggg 420
cactgcgggg tggcgatcga ctcggcggcc gacatggagg tcctgttcca ggacatccag 480cactgcgggg tggcgatcga ctcggcggcc gacatggagg tcctgttcca ggacatccag 480
ctgggtgagg ttacgacctc gatgacgatc agcggtccgg ccgtccccgt cttctgcatg 540ctgggtgagg ttacgacctc gatgacgatc agcggtccgg ccgtccccgt cttctgcatg 540
tatctggtcg ccgccgagcg gcagggcgtc gacccggccg tgctcaacgg cacgctccag 600tatctggtcg ccgccgagcg gcagggcgtc gacccggccg tgctcaacgg cacgctccag 600
accgacatct tcaaggagta catcgcccag aaggagtggc tcttccggcc cgagccgcat 660accgacatct tcaaggagta catcgcccag aaggagtggc tcttccggcc cgagccgcat 660
ctgcgtctga tcggcgacct gatggagcac tgcacggccg gcatccccgc ctacaagccg 720ctgcgtctga tcggcgacct gatggagcac tgcacggccg gcatccccgc ctacaagccg 720
ctgtccgtct ccggctacca catccgtgag gcgggcgcga cggccgcaca ggagctggcg 780ctgtccgtct ccggctacca catccgtgag gcgggcgcga cggccgcaca ggagctggcg 780
tacaccctgg cggacggctt cggatatgtg gagctggggc tcagccgcgg gctcgacgtg 840tacaccctgg cggacggctt cggatatgtg gagctggggc tcagccgcgg gctcgacgtg 840
gatgtcttcg ccccggggct gtccttcttc ttcgacgcgc atgtcgactt cttcgaggag 900gatgtcttcg ccccggggct gtccttcttc ttcgacgcgc atgtcgactt cttcgaggag 900
atcgccaagt tccgggccgc gcgccgcatc tgggcgcgct ggatgcgcga ggtgtacggc 960atcgccaagt tccgggccgc gcgccgcatc tgggcgcgct ggatgcgcga ggtgtacggc 960
gcgcggagcg acaaggcgca gtggctgcgc ttccacaccc agaccgccgg ggtctcgctg 1020gcgcggagcg acaaggcgca gtggctgcgc ttccacaccc agaccgccgg ggtctcgctg 1020
accgcccagc agccgtacaa caacgtggtg cgtacggcgg tggaggcgct ggcggcggtg 1080accgcccagc agccgtacaa caacgtggtg cgtacggcgg tggaggcgct ggcggcggtg 1080
ctgggcggga ccaactcgct gcacaccaac gcactggacg agacgctggc gctgccgagc 1140ctgggcggga ccaactcgct gcacaccaac gcactggacg agacgctggc gctgccgagc 1140
gaacaggcgg cggagatcgc gctgcgcacc cagcaggtgc tgatggagga gaccggggtc 1200gaacaggcgg cggagatcgc gctgcgcacc cagcaggtgc tgatggagga gaccggggtc 1200
gcccatgtcg cggacccgct gggcggttcg tggtacgtcg agcagctgac ggaccggatc 1260gcccatgtcg cggacccgct gggcggttcg tggtacgtcg agcagctgac ggaccggatc 1260
gaggcggacg cggagaagat cttcgagcag atcaaggagc ggggactgcg ggcgcatccg 1320gaggcggacg cggagaagat cttcgagcag atcaaggagc ggggactgcg ggcgcatccg 1320
gacggtcggc acccgatcgg cccgatgacc tccggcattc tgcgggggat cgaggacggc 1380gacggtcggc acccgatcgg cccgatgacc tccggcattc tgcgggggat cgaggacggc 1380
tggttcacgg gcgagatcgc ggagtccgcc ttccgctatc agcaggccct ggagaagggc 1440tggttcacgg gcgagatcgc ggagtccgcc ttccgctatc agcaggccct ggagaagggc 1440
gacaagcacg tggtgggcgt caatgtccac accggatcgg tcaccgggga cctggagatc 1500gacaagcacg tggtgggcgt caatgtccac accggatcgg tcaccgggga cctggagatc 1500
ctgcgggtcg gccacgaggt ggagcgggag caggtgcggg tgctcgcggc gcgccgggcg 1560ctgcgggtcg gccacgaggt ggagcgggag caggtgcggg tgctcgcggc gcgccgggcg 1560
gcgcgggacg agaccgcggt gcgtacggcg ctcgacggca tgctggcggc ggcacgcgac 1620gcgcgggacg agaccgcggt gcgtacggcg ctcgacggca tgctggcggc ggcacgcgac 1620
ggcaccgaca tgatcggccc catgctggac gcggtgcgcg cggaggcgac gctcggcgag 1680ggcaccgaca tgatcggccc catgctggac gcggtgcgcg cggaggcgac gctcggcgag 1680
atctgcgggg cgctgcggga cgagtggggg atctacacgg agccgccggg cttctga 1737atctgcgggg cgctgcggga cgagtggggg atctacacgg agccgccggg cttctga 1737
<210> 5<210> 5
<211> 441<211> 441
<212> DNA<212> DNA
<213> Streptomyces nodosus<213> Streptomyces nodosus
<400> 5<400> 5
atgctgacgc gaatcgacca catcgggatc gcctgcttcg acctggagaa gaccgtcgag 60atgctgacgc gaatcgacca catcgggatc gcctgcttcg acctggagaa gaccgtcgag 60
ttctacacct cgacctacgg cttctccgtg ttccacaccg agatcaacga ggaacagggc 120ttctacacct cgacctacgg cttctccgtg ttccacaccg agatcaacga ggaacagggc 120
gtccgcgagg ccatgctgaa gatcaatgac acgggcgacg gcggggcctc ctacctccag 180gtccgcgagg ccatgctgaa gatcaatgac acgggcgacg gcggggcctc ctacctccag 180
ctgctggaac ccgtccgcga ggactccgcc gtggcgaagt ggctcgccaa gaacggggag 240ctgctggaac ccgtccgcga ggactccgcc gtggcgaagt ggctcgccaa gaacggggag 240
ggcgtacatc acatcgcctt cggcacggcg gacgtcgacg gggacgcgga ggccgtccgg 300ggcgtacatc acatcgcctt cggcacggcg gacgtcgacg gggacgcgga ggccgtccgg 300
gacaagggcg tgcgcgtgct gtacgacgag ccacgacggg gttccatggg gtcccggatc 360gacaagggcg tgcgcgtgct gtacgacgag ccacgacggg gttccatggg gtcccggatc 360
acctttctgc accccaagga ttgtcacgga gttctcacag aactggtcac atccgcggcc 420acctttctgc accccaagga ttgtcacgga gttctcacag aactggtcac atccgcggcc 420
gttgagtcac ctgagcactg a 441gttgagtcac ctgagcactg a 441
<210> 6<210> 6
<211> 1227<211> 1227
<212> DNA<212> DNA
<213> Streptomyces nodosus<213> Streptomyces nodosus
<400> 6<400> 6
atgaacgggt ccggcgtccg ggtcgccgtc accgggctgg gcgtcgtcgc ccccaacggc 60atgaacgggt ccggcgtccg ggtcgccgtc accgggctgg gcgtcgtcgc ccccaacggc 60
ctgggcgcgg aggcctactg gacggcgacc cgcaagggaa ccagcggcat cggccgcatc 120ctgggcgcgg aggcctactg gacggcgacc cgcaagggaa ccagcggcat cggccgcatc 120
tcgcggttcg tccccgacgg gtatccggcc caactggccg gggagatcga gggattcgcc 180tcgcggttcg tccccgacgg gtatccggcc caactggccg gggagatcga gggattcgcc 180
gcggcggagt atctgccggg ccggctgctg ccgcagaccg accggatgac acagctcgcc 240gcggcggagt atctgccggg ccggctgctg ccgcagaccg accggatgac acagctcgcc 240
ctcgtggcag cggactgggc gttcgaggac gccgcggtgc gtcccgggga actgcccgag 300ctcgtggcag cggactgggc gttcgaggac gccgcggtgc gtcccgggga actgcccgag 300
ttcgagatgg gcgtgatcac ggccagttcc tcgggcggct tcgagttcgg ccagcgggag 360ttcgagatgg gcgtgatcac ggccagttcc tcgggcggct tcgagttcgg ccagcgggag 360
ttgcaggccc tgtggagcca gggaagccgg tacgtcagcg cgtatcagtc gttcgcctgg 420ttgcaggccc tgtggagcca gggaagccgg tacgtcagcg cgtatcagtc gttcgcctgg 420
ttctacgccg tcaacagcgg ccagatctcc atccgcaacg gcatgcgagg cccgagcggc 480ttctacgccg tcaacagcgg ccagatctcc atccgcaacg gcatgcgagg cccgagcggc 480
gtggtcgtca gcgaccaggc cggcggactc gacgcggtcg cccaggcgcg gcgccagatc 540gtggtcgtca gcgaccaggc cggcggactc gacgcggtcg cccaggcgcg gcgccagatc 540
cgcaagggca cccggctggt gatgtcaggg gccgtggacg cctcgatctg cccctggggc 600cgcaagggca cccggctggt gatgtcaggg gccgtggacg cctcgatctg cccctggggc 600
tgggtcgccc agatggcgag caaccggctg agcaccagga ccgacccgga gcgggcgtat 660tgggtcgccc agatggcgag caaccggctg agcaccagga ccgacccgga gcgggcgtat 660
ctgcccttcg atgccgcggc gaacggccac gtggccggcg agggcggcgc cctgctcgtc 720ctgcccttcg atgccgcggc gaacggccac gtggccggcg agggcggcgc cctgctcgtc 720
ctggaggaac tggagcaggc ccgagcccgg ggcgcgaagc agatctacgg cgagatcgcc 780ctggaggaac tggagcaggc ccgagcccgg ggcgcgaagc agatctacgg cgagatcgcc 780
gggtacggct ccacgctcga cccccgcccg ggcagcgagc gtcccgcggg tctgcgcaag 840gggtacggct ccacgctcga cccccgcccg ggcagcgagc gtcccgcggg tctgcgcaag 840
gcgatcgaac tggcgctggc cgatgccggg gccacgccgg gcgagatcga cgtggtgttc 900gcgatcgaac tggcgctggc cgatgccggg gccacgccgg gcgagatcga cgtggtgttc 900
gccgacgcgg ccgccatccc cgagctggac cggatcgagg ccgcggcgat caacgaggtg 960gccgacgcgg ccgccatccc cgagctggac cggatcgagg ccgcggcgat caacgaggtg 960
ttcggagccg gggcggtgcc ggtgacggcg cccaagacga tgaccgggcg gctctactcg 1020ttcggagccg gggcggtgcc ggtgacggcg cccaagacga tgaccgggcg gctctactcg 1020
ggagcggctc ccctggacct ggccgccgcg ttcctcgcca tgcgggacgg ggtgatcccg 1080ggagcggctc ccctggacct ggccgccgcg ttcctcgcca tgcgggacgg ggtgatcccg 1080
ccgtccatcg gcgtcacgcc ctcccccgag cacggcctcg acctggtcgt cgaccaggag 1140ccgtccatcg gcgtcacgcc ctcccccgag cacggcctcg acctggtcgt cgaccaggag 1140
cggaccgcca cagtgcgctc cgccctggtg atcgcccgcg gccacggcgg tttcaactcc 1200cggaccgcca cagtgcgctc cgccctggtg atcgcccgcg gccacggcgg tttcaactcc 1200
gcaatcgtgg tgcgctccgc cgcatag 1227gcaatcgtgg tgcgctccgc cgcatag 1227
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