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CN109503553A - A kind of light Affinity Probes molecule and preparation method thereof based on VEGFR-2 inhibitor B14 - Google Patents

A kind of light Affinity Probes molecule and preparation method thereof based on VEGFR-2 inhibitor B14 Download PDF

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CN109503553A
CN109503553A CN201811481142.9A CN201811481142A CN109503553A CN 109503553 A CN109503553 A CN 109503553A CN 201811481142 A CN201811481142 A CN 201811481142A CN 109503553 A CN109503553 A CN 109503553A
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vegfr
inhibitor
photoaffinity
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phenyl
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张�杰
卢闻
王嗣岑
潘晓艳
贺浪冲
孙莹
王瑾
宋杰
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Shiyan Taihe Hospital
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Abstract

一种基于VEGFR‑2抑制剂B14光亲和探针分子及其制备方法,4‑溴吡啶‑2‑羧酸与1‑(4‑氯‑3‑(三氟甲基)苯基)‑3‑(4‑(4,4,5,5‑四甲基‑1,3,2‑二氧硼杂环戊烷‑2‑基)苯基)脲进行Suzuki偶联反应,得到带有单羧酸的中间产物;含有光亲和基团双吖丙啶与炔基的链接体与带有单羧酸的中间产物在EDC·HCl的缩合作用下,得到基于VEGFR‑2抑制剂B14的光亲和探针分子。本发明的B14光亲和探针分子制备方法简单,易于实现,并且收率较高。本发明的B14小分子光亲和探针能够用于确证B14的作用靶标以及验证光亲和标记技术在确证小分子靶标方面的可行性。A kind of photoaffinity probe molecule based on VEGFR-2 inhibitor B14 and preparation method thereof, 4-bromopyridine-2-carboxylic acid and 1-(4-chloro-3-(trifluoromethyl)phenyl)-3 ‑(4‑(4,4,5,5‑tetramethyl‑1,3,2‑dioxaborolane‑2‑yl)phenyl)urea was subjected to Suzuki coupling reaction to obtain a Intermediate product of acid; linker containing photoaffinity group bis-aziridine and alkynyl group and intermediate product with monocarboxylic acid under the condensation of EDC·HCl to obtain photoaffinity based on VEGFR-2 inhibitor B14 and probe molecules. The preparation method of the B14 photoaffinity probe molecule of the present invention is simple, easy to realize, and has a high yield. The B14 small molecule photoaffinity probe of the present invention can be used to confirm the action target of B14 and to verify the feasibility of the photoaffinity labeling technology in confirming the small molecule target.

Description

A kind of light Affinity Probes molecule and preparation method thereof based on VEGFR-2 inhibitor B14
Technical field
The present invention relates to a kind of light Affinity Probes molecule and preparation method thereof based on VEGFR-2 inhibitor B14.
Background technique
Photoaffinity labeling technology (PAL) is to combine modern molecular biology, cell biology, pharmaceutical chemistry, analytical chemistry Etc. multi-disciplinary advantage, with the photoaffinity probe molecule of synthesis, the centre of high activity is generated under the irradiation of special wavelength light Body directly can carry out irreversible covalent cross-linking with the protein of drug molecule specific binding to realize to drug targets The capture of protein molecular.It is research one of ligand and the core tool of acceptor interaction on molecular level, to illustrating ligand Discovery with acceptor interaction mechanism and drug novel targets suffers from huge impetus.
This technology was mainly used in the confirmation of molecular drug target albumen in recent years, was based primarily upon photo-crosslinking skill Art, bio-orthogonal technology and relevant bioassay technique etc. realize the capture and its confirmation of molecular drug target.Wherein light The design synthesis of affinity probe molecule is that structural modification is directly carried out on the basis of not influencing target head pharmaceutical activity, is introduced respectively Light reaction group and bio-orthogonal handle design synthesize photoaffinity probe molecule, special under the irradiation of special wavelength light The target proteins of anisotropic irreversible covalent capture target head compound.Next it is captured by bio-orthogonal reaction to realize Target proteins identification confirmation.
Vascular endothelial growth factor receptor (vascular endothelial growth factor receptor) be by The memebrane protein of VEGF gene expression belongs to tyrosine family protein, is the high molecular weight protein closely related with malignant tumour.Blood vessel Endothelial growth factors and its receptor have overexpression in a series of tumour cells, and this receptor family includes three hypotypes: VEGFR-1,VEGFR-2,VEGFR-3.Wherein VEGFR-2 is primarily involved in the proliferation of vascular endothelial cell, is distributed in cancer cell Also most extensively.A series of research confirms that it can be used as effective drug targets.
Since nearly 5 years, the optical active group reported in document has aryl azide, benzophenone, double a word used for translations containing substituent group Third pyridine, double ethylene imines this four major class.Wherein, the preferably double ethylene imines of photo-crosslinking activity.It is therefore desirable to select double ethylene imines Synthesis photoaffinity probe molecule is designed as optical active group.
Summary of the invention
The purpose of the present invention is to provide a kind of light Affinity Probes molecule based on VEGFR-2 inhibitor B14 and its preparations Method, B14 photoaffinity probe molecule are used to confirm the target proteins of B14 and the binding mode of itself and target proteins, and can For verifying feasibility of the photoaffinity labeling technology in terms of target proteins confirmation.
In order to achieve the above objectives, the invention adopts the following technical scheme:
One kind being based on VEGFR-2 inhibitor B14 photoaffinity probe molecule, and structural formula is as follows:
Wherein X is O or NH.
A kind of preparation method based on VEGFR-2 inhibitor B14 photoaffinity probe molecule, which is characterized in that including following Step:
1) 4- bromopyridine -2- carboxylic acid and 1- (4- chloro- 3- (trifluoromethyl) phenyl) -3- (4- (tetramethyl -1 4,4,5,5-, 3,2- dioxaborolane -2- bases) phenyl) urea progress Suzuki coupling reaction, obtain the intermediate product with monocarboxylic acid;
2) the chain junctor containing the double ethylene imines of light affinity groups and alkynyl is with the intermediate product with monocarboxylic acid in EDC Under the condensation of HCl, the photoaffinity probe molecule based on VEGFR-2 inhibitor B14 is obtained, structural formula is as follows:
Wherein X=O or NH.
A further improvement of the present invention lies in that the detailed process of the step 1) are as follows: by 4- bromopyridine -2- carboxylic acid, 1- (4- Chloro- 3- (trifluoromethyl) phenyl) -3- (4- (4,4,5,5- tetramethyl -1,3,2- dioxaborolane -2- base) phenyl) urea, Cesium carbonate and tetrakis triphenylphosphine palladium are dissolved in the mixed solution of acetonitrile and water, N2It protects, is handled after 100 DEG C of reaction 16h, Obtain the intermediate product with monocarboxylic acid.
A further improvement of the present invention lies in that by 4- bromopyridine -2- carboxylic acid 4.95mmol, 1- (chloro- 3- of 4- (trifluoromethyl) Phenyl) -3- (4- (4,4,5,5- tetramethyl -1,3,2- dioxaborolane -2- base) phenyl) urea 5.94mmol, cesium carbonate 9.90mmol and tetrakis triphenylphosphine palladium 0.25mmol is dissolved in the mixed solution 50mL of acetonitrile and water, N2Protection, 100 DEG C of reactions It is handled after 16h, obtains the intermediate product with monocarboxylic acid.
A further improvement of the present invention lies in that the volume ratio of acetonitrile and water is 4:1 in the mixed solution of acetonitrile and water.
A further improvement of the present invention lies in that the detailed process of the step 2) are as follows: have single carboxylic for what step 1) obtained The intermediate product of acid is dissolved in anhydrous tetrahydrofuran solution, and EDCHCl, HOBt is added, DIPEA is then added dropwise, at 0 DEG C The chain junctor containing light affinity groups double ethylene imines and alkynyl is added after stirring 1h, after stirring for 24 hours at room temperature, is handled, is obtained To the photoaffinity probe molecule based on VEGFR-2 inhibitor B14.
A further improvement of the present invention lies in that the intermediate product 0.145mmol with monocarboxylic acid is dissolved in the anhydrous tetrahydro of 3mL In tetrahydrofuran solution, add EDCHCl 0.218mmol, stir evenly at 0 DEG C of HOBt 0.174mmol, is then added dropwise DIPEA0.725mmol stirs 1h, and the chain junctor 0.145mmol containing light affinity groups double ethylene imines and alkynyl, room temperature is added Stirring for 24 hours, is obtained based on VEGFR-2 inhibitor B14 photoaffinity probe molecule.
It is a kind of based on VEGFR-2 inhibitor B14 photoaffinity probe molecule photoaffinity labeling technical aspect application.
A further improvement of the present invention lies in that based on VEGFR-2 inhibitor B14 photoaffinity probe molecule in confirmation protein targets Mark the application of aspect.
Compared with prior art, the invention has the following advantages:
By the present invention in that with the chain junctor simultaneously containing light affinity groups double ethylene imines and alkynyl, by itself and VEGFR-2 Protein inhibitor B14 connection obtains B14 photoaffinity probe molecule.The photoaffinity probe molecule is capable of the irreversible total of specificity The target proteins molecule of valence combination B14, bio-orthogonal handle in following probe molecule with contain fluorescein or biotin Another bio-orthogonal handle carry out click-reaction to confirm target proteins.B14 photoaffinity probe molecule preparation side of the invention Method is simple, it is easy to accomplish, and yield is higher.
B14 photoaffinity probe molecule in the present invention can carry out specific covalent combination, Jin Ertong to VEGFR-2 albumen Click-reaction is crossed to realize to the next confirmatory analysis of the target proteins of capture.It is realized using photoaffinity labeling technology to drug The confirmation of action target albumen and some shortcomings that original confirmation target technology can be improved.In original target confirmation technology Probe molecule cannot be stable combination drug targets molecule, be easy to cause false positive results.And original technology usually requires Large volume of fluorophor is connected on drug molecule to be analyzed, this will lead to the reduction of probe molecule activity, solubility Difference, the disadvantages of cell permeability is poor.And photoaffinity labeling technology is by synthesized micromolecule photoaffinity probe combination bio-orthogonal Technology carries out target confirmation, compensates for the deficiency of original technology.B14 small molecule photoaffinity probe of the invention can be used in really Demonstrate,prove the feasibility of the action target and verifying photoaffinity labeling technology of B14 in terms of confirming small molecule target.
Detailed description of the invention
Fig. 1 is the synthetic route chart provided by the invention based on VEGFR-2 inhibitor B14 photoaffinity probe molecule;
Wherein, compound 1 is 1- (4- chloro- 3- (trifluoromethyl) phenyl) -3- (4- (4,4,5,5- tetramethyls -1,3,2- bis- Oxygen boron heterocycle pentane -2- base) phenyl) urea, compound 2 is 4- bromopyridine -2- carboxylic acid, and compound 3 is 4- (4- (3- (the chloro- 3- of 4- (trifluoromethyl) phenyl) urea groups) phenyl) pyridine carboxylic acid (B14), compound 4 is containing the double ethylene imines of light affinity groups and alkynyl Chain junctor, compound (X) be B14 photoaffinity probe molecule.
It is marked in figure specifically:
a.CsCO3,Pd[P(C6H5)3]4,Acetonitrile,N2,80℃;b.EDC·HCl,HOBt,DIPEA,THF, rt。
Specific embodiment
The present invention is described in further detail with specific embodiment with reference to the accompanying drawing, and described is to of the invention It explains rather than limits.
By the present invention in that with the chain junctor containing the double ethylene imines of light affinity groups and alkynyl by VEGFR-2 protein inhibitor Connection obtains photoaffinity probe molecule.Photoaffinity probe molecule of the present invention can be used in confirming the target proteins of B14.
The structural formula of chain junctor containing the double ethylene imines of light affinity groups and alkynyl in the present invention are as follows:Wherein, X is O or NH.
The chemical structural formula of the photoaffinity probe molecule with confirmation molecular drug target provided by the invention is specific as follows:
Wherein, X is O or NH.
Photoaffinity probe molecule of the present invention with the effect of target confirmation, comprising:
2- (the double ethylene imine -3- bases of 3- (butyl- 3- alkynes -1- base) -3H-) ethyl 4- (4- (3- (4- chloro- 3- (trifluoromethyl) benzene Base) urea groups) phenyl) pyridine carboxylic acid.
N- (2- (the double ethylene imine -3- bases of 3- (butyl- 3- alkynes -1- base) -3H-) ethyl) -4- (4- (3- (chloro- 3- (fluoroform of 4- Base) phenyl) urea groups) phenyl) picolinamide.
Carry out the tool that the present invention will be described in detail provides below with reference to synthetic route shown in Fig. 1 and specific synthetic example The preparation for the photoaffinity probe molecule for thering is target confirmation to act on and method for screening active ingredients.
Referring to Fig. 1, a kind of preparation method based on VEGFR-2 inhibitor B14 photoaffinity probe molecule, including following step It is rapid:
1) 4- bromopyridine -2- carboxylic acid and 1- (4- chloro- 3- (trifluoromethyl) phenyl) -3- (4- (tetramethyl -1 4,4,5,5-, 3,2- dioxaborolane -2- bases) phenyl) urea progress Suzuki coupling reaction, obtain the intermediate product with monocarboxylic acid;
The concrete operations of the step 1) are as follows: by 4- bromopyridine -2- carboxylic acid, 1- (4- chloro- 3- (trifluoromethyl) phenyl) -3- (4- (4,4,5,5- tetramethyl -1,3,2- dioxaborolane -2- base) phenyl) urea, cesium carbonate and tetrakis triphenylphosphine palladium are molten In the mixed solution (volume ratio of acetonitrile and water is 4:1) of acetonitrile and water, N2Protection, 100 DEG C of reaction 16h.After reaction, It filters, rotation is added appropriate ethyl acetate and water extracts except filtrate, merging organic phase, saturated common salt water washing, and anhydrous sodium sulfate is dry It is dry, the intermediate product with monocarboxylic acid is obtained after pillar layer separation.
2) by the intermediate product with monocarboxylic acid and the chain junctor containing the double ethylene imines of light affinity groups and alkynyl in EDC HCl is to obtain the compound that logical formula (X) indicates under the condensation of condensing agent;
The concrete operations of the step 2) are as follows: the intermediate product with monocarboxylic acid for obtaining step 1), EDCHCl, HOBT is dissolved in anhydrous THF, and DIPEA is added dropwise under ice bath, stirs 1h, is added containing the double ethylene imines of light affinity groups and alkynyl Chain junctor, stir at room temperature for 24 hours, after reaction, decompression rotation remove solvent, washed respectively after appropriate ethyl acetate is added It washs, saturated sodium bicarbonate washing, saturated common salt water washing merges organic phase, and anhydrous sodium sulfate is dry, and pillar layer separation obtains Lead to the compound that formula (X) indicates based on VEGFR-2 inhibitor B14 photoaffinity probe.
It is above-mentioned to be swollen in preparation by the anti-of target spot of VEGFR-2 kinases based on VEGFR-2 inhibitor B14 photoaffinity probe molecule Application in tumor medicine.
Embodiment 1
In the structural formula of the B14 photoaffinity probe molecule with target confirmation effect, X is O or NH, passes through following steps It prepares (referring to Fig. 1):
4- bromopyridine -2- carboxylic acid and 1- (4- chloro- 3- (trifluoromethyl) phenyl) -3- (4- (tetramethyl -1,3 4,4,5,5-, 2- dioxaborolane -2- base) phenyl) urea progress Suzuki coupling reaction, obtain the intermediate product with monocarboxylic acid;Specifically Process is as follows:
By 4- bromopyridine -2- carboxylic acid, 1- (4- chloro- 3- (trifluoromethyl) phenyl) -3- (4- (tetramethyl -1,3 4,4,5,5-, 2- dioxaborolane -2- base) phenyl) urea, cesium carbonate and tetrakis triphenylphosphine palladium be dissolved in the mixed solution (second of acetonitrile and water The volume ratio of nitrile and water is 4:1) in, N2Protection, 100 DEG C of reaction 16h.After reaction, it filters, rotation removes filtrate, is added appropriate Ethyl acetate and water extraction merge organic phase, and saturated common salt water washing, anhydrous sodium sulfate is dry, and pillar layer separation uses dichloro Methane/methanol (V/V=10/1) affords target compound, weight 0.36g, and yield 17% obtains the intermediate production with monocarboxylic acid Object.
LC-MS(ESI,m/z):436.79[M+H]+, 434.79 [M-H]-
(probe molecule I, X=O);Detailed process is as follows:
Intermediate product 4- (4- (3- (4- chloro- 3- (trifluoromethyl) phenyl) urea groups) phenyl) pyridine first of monocarboxylic acid will be had Sour (0.063g, 0.145mmol) is dissolved in 3mL anhydrous tetrahydrofuran solution, add EDCHCl (0.04g, 0.218mmol), HOBT (0.024g, 0.174mmol) is stirred evenly at 0 DEG C, is then added dropwise DIPEA (0.094g .725mmol), stirring 1h is added the chain junctor (0.02g, 0.145mmol) containing light affinity groups double ethylene imines and alkynyl, is stirred at room temperature for 24 hours, reaction After, decompression rotation removes solvent, is added after appropriate ethyl acetate and carries out water washing, saturated sodium bicarbonate washing, saturation food respectively Salt water washing merges organic phase, and anhydrous sodium sulfate is dry, and pillar layer separation is washed using petrol ether/ethyl acetate (V/V=1/1) It is de- to obtain target compound, weight 0.03g, yield 41.66%.It obtains based on VEGFR-2 inhibitor B14 photoaffinity probe general formula (X) compound indicated.
The structure of gained target compound is as follows:
Hydrogen composes nuclear magnetic resonance data are as follows:1H NMR(400MHz,DMSO-D6)δ9.28(s,1H),δ9.17(s,1H),δ 8.75-8.76(D,1H),δ8.34-8.35(d,1H),δ8.14(d,1H),δ7.97-7,99(d,1H),δ7.85-7.87(d, 2H),δ7.65-7.68(m,4H),δ4.23-4.27(t,2H),δ2.83-2.84(t,1H),δ2.05-2.09(m,2H),δ 1.91-1.94(t,2H),δ1.69-1.73(t,2H).
LC-MS(ESI,m/z):556.94[M+H]+
Embodiment 2
In the structural formula of photoaffinity probe molecule II, X NH.
Synthesis step is the same as embodiment 1
The structure of gained target-probe molecule II is as follows:
Hydrogen composes nuclear magnetic resonance data are as follows:1H NMR(400MHz,DMSO-D6)δ9.28(s,1H),δ9.17(s,1H),δ 8.88-8.91(t,1H),δ8.66-8.68(d,1H),δ8.27-8.28(d,1H),δ8.14(d,1H),δ7.91-7,92(q, 1H),δ7.86-7.84(d,2H),δ7.65-7.67(m,4H),δ3.22-3.27(q,2H),δ2.85-2.86(t,1H),δ 2.01-2.06(m,2H),δ1.68-1.71(t,2H),δ1.62-1.66(t,2H).
LC-MS(ESI,m/z):555.96[M+H]+
Embodiment 3
B14 photoaffinity probe molecule screens the inhibitory activity of VEGFR-2 kinases.
Using ADP-Glo luminescent method measurement B14 photoaffinity probe molecule to the inhibitory activity of VEGFR-2 kinases.
With Buffer (Tris 80mM, MgCl220mM, BSA 0.2mg/mL, DTT 2mM) dilution ATP (10mM) be 250 μM;ATP and substrate Poly (4:1Glu, Tyr) Peptide is made into ATP (125 μM)-Poly (4:1Glu, Tyr) by volume 1:1 Peptide (0.5 μ g/ μ L) mixed solution;It is 1.5ng/ μ L with Buffer dilution kinases.Untested compound is made into 6 concentration The solution of gradient, in sequentially adding on 384 orifice plates, 2 μ L ATP-Poly (4:1Glu, Tyr) Peptide solution, 1 μ L sample are molten Liquid, the starting reaction of 2 μ L enzyme solutions.After 30 DEG C of incubation 60min, 5 μ L of ADP-Glo reagent is added and terminates reaction.Add Kinase ADP is converted ATP by 10 μ L of Detection reagent, in 25 DEG C of incubation 30min, uses PerkinElmer multi-function microplate reader Chemiluminescence module measures luminous value, calculates inhibiting rate.
Numerical value processing: inhibiting rate=(positive value-administration class value)/(positive value-feminine gender value) × 100%;
The experimental result of compound is shown in Table 1:
Inhibitory activity result of the table 1B14 photoaffinity probe molecule to VEGFR-2 kinases
As it can be seen from table 1 B14 photoaffinity probe molecule prepared by the present invention has preferable suppression to VEGFR-2 kinases System activity.

Claims (9)

1.一种基于VEGFR-2抑制剂B14光亲和探针分子,其特征在于,其结构式如下:1. based on VEGFR-2 inhibitor B14 photoaffinity probe molecule, it is characterized in that, its structural formula is as follows: 其中X为O或NH。where X is O or NH. 2.一种基于VEGFR-2抑制剂B14光亲和探针分子的制备方法,其特征在于,包括以下步骤:2. a preparation method based on VEGFR-2 inhibitor B14 photoaffinity probe molecule, is characterized in that, comprises the following steps: 1)4-溴吡啶-2-羧酸与1-(4-氯-3-(三氟甲基)苯基)-3-(4-(4,4,5,5-四甲基-1,3,2-二氧硼杂环戊烷-2-基)苯基)脲进行Suzuki偶联反应,得到带有单羧酸的中间产物;1) 4-Bromopyridine-2-carboxylic acid and 1-(4-chloro-3-(trifluoromethyl)phenyl)-3-(4-(4,4,5,5-tetramethyl-1) , 3,2-dioxaborolane-2-yl) phenyl) urea carries out Suzuki coupling reaction, obtains the intermediate product with monocarboxylic acid; 2)含有光亲和基团双吖丙啶与炔基的链接体与带有单羧酸的中间产物在EDC·HCl的缩合作用下,得到基于VEGFR-2抑制剂B14的光亲和探针分子,结构式如下:2) Under the condensation of EDC·HCl between the linker containing photoaffinity group bisaziridine and alkynyl group and the intermediate product with monocarboxylic acid, a photoaffinity probe based on VEGFR-2 inhibitor B14 is obtained Molecules, the structural formula is as follows: 其中X=O或NH。where X=O or NH. 3.根据权利要求2所述的一种基于VEGFR-2抑制剂B14光亲和探针的制备方法,其特征在于,所述步骤1)的具体过程为:将4-溴吡啶-2-羧酸、1-(4-氯-3-(三氟甲基)苯基)-3-(4-(4,4,5,5-四甲基-1,3,2-二氧硼杂环戊烷-2-基)苯基)脲、碳酸铯和四(三苯基膦)钯溶于乙腈与水的混合溶液中,N2保护,100℃反应16h后进行处理,得到带有单羧酸的中间产物。3. a kind of preparation method based on VEGFR-2 inhibitor B14 photoaffinity probe according to claim 2, is characterized in that, the concrete process of described step 1) is: 4-bromopyridine-2-carboxyl Acid, 1-(4-Chloro-3-(trifluoromethyl)phenyl)-3-(4-(4,4,5,5-tetramethyl-1,3,2-dioxaborole) Pentan-2-yl)phenyl)urea, cesium carbonate and tetrakis(triphenylphosphine)palladium were dissolved in a mixed solution of acetonitrile and water, protected by N2 , reacted at 100 °C for 16 h and then treated to obtain monocarboxylic acid acid intermediates. 4.根据权利要求2或3所述的一种基于VEGFR-2抑制剂B14光亲和探针分子的制备方法,其特征在于,将4-溴吡啶-2-羧酸4.95mmol、1-(4-氯-3-(三氟甲基)苯基)-3-(4-(4,4,5,5-四甲基-1,3,2-二氧硼杂环戊烷-2-基)苯基)脲5.94mmol、碳酸铯9.90mmol和四(三苯基膦)钯0.25mmol溶于乙腈与水的混合溶液50mL中,N2保护,100℃反应16h后进行处理,得到带有单羧酸的中间产物。4. a kind of preparation method based on VEGFR-2 inhibitor B14 photoaffinity probe molecule according to claim 2 or 3 is characterized in that, 4-bromopyridine-2-carboxylic acid 4.95mmol, 1-( 4-Chloro-3-(trifluoromethyl)phenyl)-3-(4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolane-2- (base)phenyl)urea 5.94mmol, cesium carbonate 9.90mmol and tetrakis(triphenylphosphine)palladium 0.25mmol were dissolved in 50mL of a mixed solution of acetonitrile and water, protected by N, reacted at 100°C for 16h and treated to obtain a compound with Intermediate product of monocarboxylic acid. 5.根据权利要求4所述的一种基于VEGFR-2抑制剂B14光亲和探针分子的制备方法,其特征在于,乙腈与水的混合溶液中乙腈与水的体积比为4:1。5 . The method for preparing a VEGFR-2 inhibitor B14 photoaffinity probe molecule according to claim 4 , wherein the volume ratio of acetonitrile to water in the mixed solution of acetonitrile and water is 4:1. 6 . 6.根据权利要求2所述的一种基于VEGFR-2抑制剂B14光亲和探针分子制备方法,其特征在于,所述步骤2)的具体过程为:将步骤1)得到的带有单羧酸的中间产物溶于无水四氢呋喃溶液中,加入EDC·HCl、HOBt,然后逐滴加入DIPEA,在0℃搅拌1h后加入含有光亲和基团双吖丙啶与炔基的链接体,室温下搅拌24h后,进行处理,得到基于VEGFR-2抑制剂B14的光亲和探针分子。6. A kind of preparation method based on VEGFR-2 inhibitor B14 photoaffinity probe molecule according to claim 2, is characterized in that, the concrete process of described step 2) is: The intermediate product of carboxylic acid was dissolved in anhydrous tetrahydrofuran solution, EDC·HCl, HOBt were added, then DIPEA was added dropwise, and after stirring at 0 °C for 1 h, a linker containing photoaffinity group bisaziridine and alkynyl group was added, After stirring at room temperature for 24 hours, the photo-affinity probe molecule based on VEGFR-2 inhibitor B14 was obtained. 7.根据权利要求2或6所述的一种基于VEGFR-2抑制剂B14光亲和探针分子的制备方法,其特征在于,将带有单羧酸的中间产物0.145mmol溶于3mL无水四氢呋喃溶液中,加EDC·HCl 0.218mmol、HOBt 0.174mmol 0℃下搅拌均匀,然后逐滴加入DIPEA 0.725mmol,搅拌1h,加入含有光亲和基团双吖丙啶与炔基的链接体0.145mmol,室温搅拌24h,得到基于VEGFR-2抑制剂B14光亲和探针分子。7. a kind of preparation method based on VEGFR-2 inhibitor B14 photoaffinity probe molecule according to claim 2 or 6, is characterized in that, the intermediate product 0.145mmol with monocarboxylic acid is dissolved in 3mL anhydrous To the tetrahydrofuran solution, add EDC·HCl 0.218 mmol, HOBt 0.174 mmol, stir evenly at 0°C, then add DIPEA 0.725 mmol dropwise, stir for 1 h, add 0.145 mmol of the linker containing photoaffinity group bisaziridine and alkynyl group , and stirred at room temperature for 24h to obtain a photoaffinity probe molecule based on VEGFR-2 inhibitor B14. 8.一种如权利要求3-7中任意一项方法制备的基于VEGFR-2抑制剂B14光亲和探针分子在光亲和标记技术方面的应用。8. The application of a VEGFR-2 inhibitor B14-based photoaffinity probe molecule prepared by the method according to any one of claims 3-7 in photoaffinity labeling technology. 9.根据权利要求8所述的应用,其特征在于,基于VEGFR-2抑制剂B14光亲和探针分子在确证蛋白靶标方面的应用。9. The use according to claim 8, characterized in that it is based on the application of the VEGFR-2 inhibitor B14 photoaffinity probe molecule in confirming the protein target.
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Cited By (4)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN110407749A (en) * 2019-08-30 2019-11-05 西安交通大学 A photoaffinity linker containing disulfide bond and its preparation method and application
CN113061126A (en) * 2021-03-16 2021-07-02 无锡海伦生物科技有限公司 Preparation method and application of sorafenib photoaffinity probe molecule based on halogen intermediate
CN114685463A (en) * 2021-07-01 2022-07-01 上海交通大学 Isorhamnetin photoaffinity probe and synthetic method and application thereof
CN115677583A (en) * 2022-10-31 2023-02-03 南京科络思生物科技有限公司 Phenylhydrazine-based natural product photoaffinity probe reactant, and preparation method and application thereof

Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN102532197A (en) * 2010-12-24 2012-07-04 中国科学院上海药物研究所 First glass photoaffinity labeling difunctional probe molecule and preparation method and application thereof
CN104817493A (en) * 2015-03-11 2015-08-05 西安交通大学 Aromatic heterocyclic amide substituted diarylurea compound, preparation method and application thereof

Patent Citations (2)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN102532197A (en) * 2010-12-24 2012-07-04 中国科学院上海药物研究所 First glass photoaffinity labeling difunctional probe molecule and preparation method and application thereof
CN104817493A (en) * 2015-03-11 2015-08-05 西安交通大学 Aromatic heterocyclic amide substituted diarylurea compound, preparation method and application thereof

Non-Patent Citations (1)

* Cited by examiner, † Cited by third party
Title
ZHENGQIU LI等: "Design and Synthesis of Minimalist Terminal Alkyne-Containing Diazirine Photo-Crosslinkers and Their Incorporation into Kinase Inhibitors for Cell- and Tissue-Based Proteome Profiling", 《ANGEW. CHEM. INT. ED.》 *

Cited By (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN110407749A (en) * 2019-08-30 2019-11-05 西安交通大学 A photoaffinity linker containing disulfide bond and its preparation method and application
CN110407749B (en) * 2019-08-30 2021-01-19 西安交通大学 Photoaffinity linker containing disulfide bond, preparation method and application thereof
CN113061126A (en) * 2021-03-16 2021-07-02 无锡海伦生物科技有限公司 Preparation method and application of sorafenib photoaffinity probe molecule based on halogen intermediate
CN114685463A (en) * 2021-07-01 2022-07-01 上海交通大学 Isorhamnetin photoaffinity probe and synthetic method and application thereof
CN114685463B (en) * 2021-07-01 2024-05-28 上海交通大学 Isorhamnetin photoaffinity probe and its synthesis method and application
CN115677583A (en) * 2022-10-31 2023-02-03 南京科络思生物科技有限公司 Phenylhydrazine-based natural product photoaffinity probe reactant, and preparation method and application thereof

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