A kind of light Affinity Probes molecule and preparation method thereof based on VEGFR-2 inhibitor B14
Technical field
The present invention relates to a kind of light Affinity Probes molecule and preparation method thereof based on VEGFR-2 inhibitor B14.
Background technique
Photoaffinity labeling technology (PAL) is to combine modern molecular biology, cell biology, pharmaceutical chemistry, analytical chemistry
Etc. multi-disciplinary advantage, with the photoaffinity probe molecule of synthesis, the centre of high activity is generated under the irradiation of special wavelength light
Body directly can carry out irreversible covalent cross-linking with the protein of drug molecule specific binding to realize to drug targets
The capture of protein molecular.It is research one of ligand and the core tool of acceptor interaction on molecular level, to illustrating ligand
Discovery with acceptor interaction mechanism and drug novel targets suffers from huge impetus.
This technology was mainly used in the confirmation of molecular drug target albumen in recent years, was based primarily upon photo-crosslinking skill
Art, bio-orthogonal technology and relevant bioassay technique etc. realize the capture and its confirmation of molecular drug target.Wherein light
The design synthesis of affinity probe molecule is that structural modification is directly carried out on the basis of not influencing target head pharmaceutical activity, is introduced respectively
Light reaction group and bio-orthogonal handle design synthesize photoaffinity probe molecule, special under the irradiation of special wavelength light
The target proteins of anisotropic irreversible covalent capture target head compound.Next it is captured by bio-orthogonal reaction to realize
Target proteins identification confirmation.
Vascular endothelial growth factor receptor (vascular endothelial growth factor receptor) be by
The memebrane protein of VEGF gene expression belongs to tyrosine family protein, is the high molecular weight protein closely related with malignant tumour.Blood vessel
Endothelial growth factors and its receptor have overexpression in a series of tumour cells, and this receptor family includes three hypotypes:
VEGFR-1,VEGFR-2,VEGFR-3.Wherein VEGFR-2 is primarily involved in the proliferation of vascular endothelial cell, is distributed in cancer cell
Also most extensively.A series of research confirms that it can be used as effective drug targets.
Since nearly 5 years, the optical active group reported in document has aryl azide, benzophenone, double a word used for translations containing substituent group
Third pyridine, double ethylene imines this four major class.Wherein, the preferably double ethylene imines of photo-crosslinking activity.It is therefore desirable to select double ethylene imines
Synthesis photoaffinity probe molecule is designed as optical active group.
Summary of the invention
The purpose of the present invention is to provide a kind of light Affinity Probes molecule based on VEGFR-2 inhibitor B14 and its preparations
Method, B14 photoaffinity probe molecule are used to confirm the target proteins of B14 and the binding mode of itself and target proteins, and can
For verifying feasibility of the photoaffinity labeling technology in terms of target proteins confirmation.
In order to achieve the above objectives, the invention adopts the following technical scheme:
One kind being based on VEGFR-2 inhibitor B14 photoaffinity probe molecule, and structural formula is as follows:
Wherein X is O or NH.
A kind of preparation method based on VEGFR-2 inhibitor B14 photoaffinity probe molecule, which is characterized in that including following
Step:
1) 4- bromopyridine -2- carboxylic acid and 1- (4- chloro- 3- (trifluoromethyl) phenyl) -3- (4- (tetramethyl -1 4,4,5,5-,
3,2- dioxaborolane -2- bases) phenyl) urea progress Suzuki coupling reaction, obtain the intermediate product with monocarboxylic acid;
2) the chain junctor containing the double ethylene imines of light affinity groups and alkynyl is with the intermediate product with monocarboxylic acid in EDC
Under the condensation of HCl, the photoaffinity probe molecule based on VEGFR-2 inhibitor B14 is obtained, structural formula is as follows:
Wherein X=O or NH.
A further improvement of the present invention lies in that the detailed process of the step 1) are as follows: by 4- bromopyridine -2- carboxylic acid, 1- (4-
Chloro- 3- (trifluoromethyl) phenyl) -3- (4- (4,4,5,5- tetramethyl -1,3,2- dioxaborolane -2- base) phenyl) urea,
Cesium carbonate and tetrakis triphenylphosphine palladium are dissolved in the mixed solution of acetonitrile and water, N2It protects, is handled after 100 DEG C of reaction 16h,
Obtain the intermediate product with monocarboxylic acid.
A further improvement of the present invention lies in that by 4- bromopyridine -2- carboxylic acid 4.95mmol, 1- (chloro- 3- of 4- (trifluoromethyl)
Phenyl) -3- (4- (4,4,5,5- tetramethyl -1,3,2- dioxaborolane -2- base) phenyl) urea 5.94mmol, cesium carbonate
9.90mmol and tetrakis triphenylphosphine palladium 0.25mmol is dissolved in the mixed solution 50mL of acetonitrile and water, N2Protection, 100 DEG C of reactions
It is handled after 16h, obtains the intermediate product with monocarboxylic acid.
A further improvement of the present invention lies in that the volume ratio of acetonitrile and water is 4:1 in the mixed solution of acetonitrile and water.
A further improvement of the present invention lies in that the detailed process of the step 2) are as follows: have single carboxylic for what step 1) obtained
The intermediate product of acid is dissolved in anhydrous tetrahydrofuran solution, and EDCHCl, HOBt is added, DIPEA is then added dropwise, at 0 DEG C
The chain junctor containing light affinity groups double ethylene imines and alkynyl is added after stirring 1h, after stirring for 24 hours at room temperature, is handled, is obtained
To the photoaffinity probe molecule based on VEGFR-2 inhibitor B14.
A further improvement of the present invention lies in that the intermediate product 0.145mmol with monocarboxylic acid is dissolved in the anhydrous tetrahydro of 3mL
In tetrahydrofuran solution, add EDCHCl 0.218mmol, stir evenly at 0 DEG C of HOBt 0.174mmol, is then added dropwise
DIPEA0.725mmol stirs 1h, and the chain junctor 0.145mmol containing light affinity groups double ethylene imines and alkynyl, room temperature is added
Stirring for 24 hours, is obtained based on VEGFR-2 inhibitor B14 photoaffinity probe molecule.
It is a kind of based on VEGFR-2 inhibitor B14 photoaffinity probe molecule photoaffinity labeling technical aspect application.
A further improvement of the present invention lies in that based on VEGFR-2 inhibitor B14 photoaffinity probe molecule in confirmation protein targets
Mark the application of aspect.
Compared with prior art, the invention has the following advantages:
By the present invention in that with the chain junctor simultaneously containing light affinity groups double ethylene imines and alkynyl, by itself and VEGFR-2
Protein inhibitor B14 connection obtains B14 photoaffinity probe molecule.The photoaffinity probe molecule is capable of the irreversible total of specificity
The target proteins molecule of valence combination B14, bio-orthogonal handle in following probe molecule with contain fluorescein or biotin
Another bio-orthogonal handle carry out click-reaction to confirm target proteins.B14 photoaffinity probe molecule preparation side of the invention
Method is simple, it is easy to accomplish, and yield is higher.
B14 photoaffinity probe molecule in the present invention can carry out specific covalent combination, Jin Ertong to VEGFR-2 albumen
Click-reaction is crossed to realize to the next confirmatory analysis of the target proteins of capture.It is realized using photoaffinity labeling technology to drug
The confirmation of action target albumen and some shortcomings that original confirmation target technology can be improved.In original target confirmation technology
Probe molecule cannot be stable combination drug targets molecule, be easy to cause false positive results.And original technology usually requires
Large volume of fluorophor is connected on drug molecule to be analyzed, this will lead to the reduction of probe molecule activity, solubility
Difference, the disadvantages of cell permeability is poor.And photoaffinity labeling technology is by synthesized micromolecule photoaffinity probe combination bio-orthogonal
Technology carries out target confirmation, compensates for the deficiency of original technology.B14 small molecule photoaffinity probe of the invention can be used in really
Demonstrate,prove the feasibility of the action target and verifying photoaffinity labeling technology of B14 in terms of confirming small molecule target.
Detailed description of the invention
Fig. 1 is the synthetic route chart provided by the invention based on VEGFR-2 inhibitor B14 photoaffinity probe molecule;
Wherein, compound 1 is 1- (4- chloro- 3- (trifluoromethyl) phenyl) -3- (4- (4,4,5,5- tetramethyls -1,3,2- bis-
Oxygen boron heterocycle pentane -2- base) phenyl) urea, compound 2 is 4- bromopyridine -2- carboxylic acid, and compound 3 is 4- (4- (3- (the chloro- 3- of 4-
(trifluoromethyl) phenyl) urea groups) phenyl) pyridine carboxylic acid (B14), compound 4 is containing the double ethylene imines of light affinity groups and alkynyl
Chain junctor, compound (X) be B14 photoaffinity probe molecule.
It is marked in figure specifically:
a.CsCO3,Pd[P(C6H5)3]4,Acetonitrile,N2,80℃;b.EDC·HCl,HOBt,DIPEA,THF,
rt。
Specific embodiment
The present invention is described in further detail with specific embodiment with reference to the accompanying drawing, and described is to of the invention
It explains rather than limits.
By the present invention in that with the chain junctor containing the double ethylene imines of light affinity groups and alkynyl by VEGFR-2 protein inhibitor
Connection obtains photoaffinity probe molecule.Photoaffinity probe molecule of the present invention can be used in confirming the target proteins of B14.
The structural formula of chain junctor containing the double ethylene imines of light affinity groups and alkynyl in the present invention are as follows:Wherein, X is O or NH.
The chemical structural formula of the photoaffinity probe molecule with confirmation molecular drug target provided by the invention is specific as follows:
Wherein, X is O or NH.
Photoaffinity probe molecule of the present invention with the effect of target confirmation, comprising:
2- (the double ethylene imine -3- bases of 3- (butyl- 3- alkynes -1- base) -3H-) ethyl 4- (4- (3- (4- chloro- 3- (trifluoromethyl) benzene
Base) urea groups) phenyl) pyridine carboxylic acid.
N- (2- (the double ethylene imine -3- bases of 3- (butyl- 3- alkynes -1- base) -3H-) ethyl) -4- (4- (3- (chloro- 3- (fluoroform of 4-
Base) phenyl) urea groups) phenyl) picolinamide.
Carry out the tool that the present invention will be described in detail provides below with reference to synthetic route shown in Fig. 1 and specific synthetic example
The preparation for the photoaffinity probe molecule for thering is target confirmation to act on and method for screening active ingredients.
Referring to Fig. 1, a kind of preparation method based on VEGFR-2 inhibitor B14 photoaffinity probe molecule, including following step
It is rapid:
1) 4- bromopyridine -2- carboxylic acid and 1- (4- chloro- 3- (trifluoromethyl) phenyl) -3- (4- (tetramethyl -1 4,4,5,5-,
3,2- dioxaborolane -2- bases) phenyl) urea progress Suzuki coupling reaction, obtain the intermediate product with monocarboxylic acid;
The concrete operations of the step 1) are as follows: by 4- bromopyridine -2- carboxylic acid, 1- (4- chloro- 3- (trifluoromethyl) phenyl) -3-
(4- (4,4,5,5- tetramethyl -1,3,2- dioxaborolane -2- base) phenyl) urea, cesium carbonate and tetrakis triphenylphosphine palladium are molten
In the mixed solution (volume ratio of acetonitrile and water is 4:1) of acetonitrile and water, N2Protection, 100 DEG C of reaction 16h.After reaction,
It filters, rotation is added appropriate ethyl acetate and water extracts except filtrate, merging organic phase, saturated common salt water washing, and anhydrous sodium sulfate is dry
It is dry, the intermediate product with monocarboxylic acid is obtained after pillar layer separation.
2) by the intermediate product with monocarboxylic acid and the chain junctor containing the double ethylene imines of light affinity groups and alkynyl in EDC
HCl is to obtain the compound that logical formula (X) indicates under the condensation of condensing agent;
The concrete operations of the step 2) are as follows: the intermediate product with monocarboxylic acid for obtaining step 1), EDCHCl,
HOBT is dissolved in anhydrous THF, and DIPEA is added dropwise under ice bath, stirs 1h, is added containing the double ethylene imines of light affinity groups and alkynyl
Chain junctor, stir at room temperature for 24 hours, after reaction, decompression rotation remove solvent, washed respectively after appropriate ethyl acetate is added
It washs, saturated sodium bicarbonate washing, saturated common salt water washing merges organic phase, and anhydrous sodium sulfate is dry, and pillar layer separation obtains
Lead to the compound that formula (X) indicates based on VEGFR-2 inhibitor B14 photoaffinity probe.
It is above-mentioned to be swollen in preparation by the anti-of target spot of VEGFR-2 kinases based on VEGFR-2 inhibitor B14 photoaffinity probe molecule
Application in tumor medicine.
Embodiment 1
In the structural formula of the B14 photoaffinity probe molecule with target confirmation effect, X is O or NH, passes through following steps
It prepares (referring to Fig. 1):
4- bromopyridine -2- carboxylic acid and 1- (4- chloro- 3- (trifluoromethyl) phenyl) -3- (4- (tetramethyl -1,3 4,4,5,5-,
2- dioxaborolane -2- base) phenyl) urea progress Suzuki coupling reaction, obtain the intermediate product with monocarboxylic acid;Specifically
Process is as follows:
By 4- bromopyridine -2- carboxylic acid, 1- (4- chloro- 3- (trifluoromethyl) phenyl) -3- (4- (tetramethyl -1,3 4,4,5,5-,
2- dioxaborolane -2- base) phenyl) urea, cesium carbonate and tetrakis triphenylphosphine palladium be dissolved in the mixed solution (second of acetonitrile and water
The volume ratio of nitrile and water is 4:1) in, N2Protection, 100 DEG C of reaction 16h.After reaction, it filters, rotation removes filtrate, is added appropriate
Ethyl acetate and water extraction merge organic phase, and saturated common salt water washing, anhydrous sodium sulfate is dry, and pillar layer separation uses dichloro
Methane/methanol (V/V=10/1) affords target compound, weight 0.36g, and yield 17% obtains the intermediate production with monocarboxylic acid
Object.
LC-MS(ESI,m/z):436.79[M+H]+, 434.79 [M-H]-
(probe molecule I, X=O);Detailed process is as follows:
Intermediate product 4- (4- (3- (4- chloro- 3- (trifluoromethyl) phenyl) urea groups) phenyl) pyridine first of monocarboxylic acid will be had
Sour (0.063g, 0.145mmol) is dissolved in 3mL anhydrous tetrahydrofuran solution, add EDCHCl (0.04g, 0.218mmol),
HOBT (0.024g, 0.174mmol) is stirred evenly at 0 DEG C, is then added dropwise DIPEA (0.094g .725mmol), stirring
1h is added the chain junctor (0.02g, 0.145mmol) containing light affinity groups double ethylene imines and alkynyl, is stirred at room temperature for 24 hours, reaction
After, decompression rotation removes solvent, is added after appropriate ethyl acetate and carries out water washing, saturated sodium bicarbonate washing, saturation food respectively
Salt water washing merges organic phase, and anhydrous sodium sulfate is dry, and pillar layer separation is washed using petrol ether/ethyl acetate (V/V=1/1)
It is de- to obtain target compound, weight 0.03g, yield 41.66%.It obtains based on VEGFR-2 inhibitor B14 photoaffinity probe general formula
(X) compound indicated.
The structure of gained target compound is as follows:
Hydrogen composes nuclear magnetic resonance data are as follows:1H NMR(400MHz,DMSO-D6)δ9.28(s,1H),δ9.17(s,1H),δ
8.75-8.76(D,1H),δ8.34-8.35(d,1H),δ8.14(d,1H),δ7.97-7,99(d,1H),δ7.85-7.87(d,
2H),δ7.65-7.68(m,4H),δ4.23-4.27(t,2H),δ2.83-2.84(t,1H),δ2.05-2.09(m,2H),δ
1.91-1.94(t,2H),δ1.69-1.73(t,2H).
LC-MS(ESI,m/z):556.94[M+H]+。
Embodiment 2
In the structural formula of photoaffinity probe molecule II, X NH.
Synthesis step is the same as embodiment 1
The structure of gained target-probe molecule II is as follows:
Hydrogen composes nuclear magnetic resonance data are as follows:1H NMR(400MHz,DMSO-D6)δ9.28(s,1H),δ9.17(s,1H),δ
8.88-8.91(t,1H),δ8.66-8.68(d,1H),δ8.27-8.28(d,1H),δ8.14(d,1H),δ7.91-7,92(q,
1H),δ7.86-7.84(d,2H),δ7.65-7.67(m,4H),δ3.22-3.27(q,2H),δ2.85-2.86(t,1H),δ
2.01-2.06(m,2H),δ1.68-1.71(t,2H),δ1.62-1.66(t,2H).
LC-MS(ESI,m/z):555.96[M+H]+。
Embodiment 3
B14 photoaffinity probe molecule screens the inhibitory activity of VEGFR-2 kinases.
Using ADP-Glo luminescent method measurement B14 photoaffinity probe molecule to the inhibitory activity of VEGFR-2 kinases.
With Buffer (Tris 80mM, MgCl220mM, BSA 0.2mg/mL, DTT 2mM) dilution ATP (10mM) be 250
μM;ATP and substrate Poly (4:1Glu, Tyr) Peptide is made into ATP (125 μM)-Poly (4:1Glu, Tyr) by volume 1:1
Peptide (0.5 μ g/ μ L) mixed solution;It is 1.5ng/ μ L with Buffer dilution kinases.Untested compound is made into 6 concentration
The solution of gradient, in sequentially adding on 384 orifice plates, 2 μ L ATP-Poly (4:1Glu, Tyr) Peptide solution, 1 μ L sample are molten
Liquid, the starting reaction of 2 μ L enzyme solutions.After 30 DEG C of incubation 60min, 5 μ L of ADP-Glo reagent is added and terminates reaction.Add Kinase
ADP is converted ATP by 10 μ L of Detection reagent, in 25 DEG C of incubation 30min, uses PerkinElmer multi-function microplate reader
Chemiluminescence module measures luminous value, calculates inhibiting rate.
Numerical value processing: inhibiting rate=(positive value-administration class value)/(positive value-feminine gender value) × 100%;
The experimental result of compound is shown in Table 1:
Inhibitory activity result of the table 1B14 photoaffinity probe molecule to VEGFR-2 kinases
As it can be seen from table 1 B14 photoaffinity probe molecule prepared by the present invention has preferable suppression to VEGFR-2 kinases
System activity.