CN108715864A - It is a kind of for the gene insertion mutation system and its mutation method of mouse embryo stem cell and application - Google Patents
It is a kind of for the gene insertion mutation system and its mutation method of mouse embryo stem cell and application Download PDFInfo
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Abstract
Description
技术领域technical field
本发明涉及小鼠胚胎干细胞的基因插入突变克隆与应用技术,更具体地说,本发明涉及一种用于小鼠胚胎干细胞的基因插入突变系统及其突变方法和应用。The invention relates to the gene insertion mutation cloning and application technology of mouse embryonic stem cells, more specifically, the invention relates to a gene insertion mutation system for mouse embryonic stem cells and its mutation method and application.
背景技术Background technique
基因功能研究的一个重要手段是采用遗传操纵技术对模式动物如小鼠、斑马鱼、果蝇等进行基因过表达或敲除/降,通过观察胚胎发育、器官形成等生命过程中的异常表型,解析基因在胚胎发育、器官形成,疾病发生过程中的分子机制。小鼠作为哺乳动物模式生物,在研究人类基因功能方面具有无法比拟的优越性,但是小鼠活体基因打靶技术费时费力,严重影响了基因功能研究进程。小鼠胚胎干细胞具有自我更新能力而且能够分化成三个胚层,受到研究者的青睐。过去二十多年以来,国际小鼠研究协会致力于小鼠胚胎干细胞基因捕获及基因打靶突变筛选,截止到2018年1月,国际基因捕获联盟采用基因捕获方法获得121703个小鼠胚胎干细胞克隆,捕获12393个基因。要实现小鼠全基因水平的突变研究,需要使用不同的基因捕获及基因打靶技术,目前报道的基因捕获载体在小鼠基因捕获及基因功能研究方面发挥了重要作用,但也存在一些不足之处,如基因插入位点的偏好性、基因捕获的有效性等。根据基因功能研究的需求,结合SB转座子在哺乳动物中的转座优势,我们构建了基于睡美人(Sleeping Beauty,SB)转座子的polyA基因捕获载体,以期挖掘更多的功能基因。An important means of gene function research is to use genetic manipulation techniques to overexpress or knock out/down genes in model animals such as mice, zebrafish, and fruit flies, and to observe abnormal phenotypes in life processes such as embryonic development and organ formation. , to analyze the molecular mechanism of genes in embryonic development, organ formation, and disease occurrence. As a mammalian model organism, mice have incomparable advantages in the study of human gene functions, but mouse live gene targeting technology is time-consuming and laborious, which seriously affects the process of gene function research. Mouse embryonic stem cells are favored by researchers for their ability to self-renew and differentiate into the three germ layers. Over the past two decades, the International Association for Mouse Research has been committed to mouse embryonic stem cell gene trapping and gene targeting mutation screening. As of January 2018, the International Gene Trapping Consortium has obtained 121,703 mouse embryonic stem cell clones using gene trapping methods. 12393 genes were captured. In order to realize the mutation research at the whole gene level of mice, different gene trapping and gene targeting technologies need to be used. The gene trapping vectors reported so far have played an important role in mouse gene trapping and gene function research, but there are also some shortcomings , such as the preference of gene insertion sites, the effectiveness of gene capture, etc. According to the needs of gene function research, combined with the transposition advantage of SB transposon in mammals, we constructed a polyA gene trap vector based on Sleeping Beauty (SB) transposon, in order to explore more functional genes.
发明内容Contents of the invention
本发明的目的在于提供了一种小鼠胚胎干细胞的基因插入突变系统及其突变方法和应用。本发明的基因插入突变系统可随机插入小鼠胚胎干细胞的基因组中,对小鼠胚胎干细胞基因进行插入突变,有助于研究者对小鼠基因进行功能研究。The purpose of the present invention is to provide a mouse embryonic stem cell gene insertion mutation system and its mutation method and application. The gene insertion mutation system of the present invention can be randomly inserted into the genome of the mouse embryonic stem cell, and the insertion mutation of the mouse embryonic stem cell gene is helpful for researchers to conduct functional research on the mouse gene.
本发明的第一个方面,提供了一种基于睡美人SB转座子介导的polyA基因捕获载体,所述基因捕获载体包括:SA-EXON-SV40polyA-TT基因突变元件,SV40启动子,IRES-SD-ARE序列,筛选标记基因Neo,FRT序列,基因按SA-EXON-SV40PolyA-TT-FRT-SV40-Neo-FRT-IRES-SD-ARE的顺序串联。The first aspect of the present invention provides a sleeping beauty SB transposon-mediated polyA gene trapping vector, which includes: SA-EXON-SV40 polyA-TT gene mutation element, SV40 promoter, IRES - SD-ARE sequence, screening marker gene Neo, FRT sequence, gene in series in the order of SA-EXON-SV40PolyA-TT-FRT-SV40-Neo-FRT-IRES-SD-ARE.
上述技术方案中所述的基因捕获载体的构建方法如下:将pT2/polyA-trap载体进行AatII和SacII双酶切,将SA-EXON-SV40polyA-TT基因突变元件、SV40启动子、筛选标记基因Neo、IRES-SD-ARE序列,进行连接,得到pT2/SA-EXON-SV40PolyA-TT-SV40-Neo-IRES-SD-ARE载体,随后将FRT序列通过PCR方法克隆到SV40-Neo两端,得到所述的基因捕获载体pT2/SA-EXON-SV40PolyA-TT-FRT-SV40-Neo-FRT-IRES-SD-ARE,所述基因捕获载体的核酸序列如SEQ ID No.1所示。The construction method of the gene trap vector described in the above technical scheme is as follows: the pT2/polyA-trap vector is subjected to AatII and SacII double enzyme digestion, and the SA-EXON-SV40polyA-TT gene mutation element, SV40 promoter, screening marker gene Neo , IRES-SD-ARE sequence, were connected to obtain the pT2/SA-EXON-SV40PolyA-TT-SV40-Neo-IRES-SD-ARE vector, and then the FRT sequence was cloned to both ends of SV40-Neo by PCR method to obtain the The gene trap vector pT2/SA-EXON-SV40PolyA-TT-FRT-SV40-Neo-FRT-IRES-SD-ARE, the nucleic acid sequence of the gene trap vector is shown in SEQ ID No.1.
本发明的第二个方面,提供了一种可诱导的转座酶表达载体,所述转座酶表达载体包括CMV启动子、Tet-on系统(rtTA及TRE元件)、SB11转座酶、βactin polyA序列,基因按pCMV-rtTA-TRE-SB11-βactin polyA的顺序串联。The second aspect of the present invention provides an inducible transposase expression vector, the transposase expression vector includes CMV promoter, Tet-on system (rtTA and TRE elements), SB11 transposase, βactin polyA sequence, the gene is connected in series in the order of pCMV-rtTA-TRE-SB11-βactin polyA.
上述技术方案中所述的转座酶表达载体的构建方法如下:The construction method of the transposase expression vector described in the above technical scheme is as follows:
将TRE-miniCMV片段通过酶切AgeI/BsiWI双酶切位点克隆到载体PCMV-rtTA-SB11-βactin polyA上,得到所述的转座酶表达载体PCMV-rtTA-TRE-SB11-βactin polyA。所述载体的核酸序列如SEQ ID No.2所示。The TRE-miniCMV fragment was cloned into the vector PCMV-rtTA-SB11-βactin polyA by digesting the AgeI/BsiWI double restriction site to obtain the transposase expression vector PCMV-rtTA-TRE-SB11-βactin polyA. The nucleic acid sequence of the vector is shown in SEQ ID No.2.
本发明上述所述的转座酶表达载体只有在DOX存在的情况下诱导表达SB11转座酶,SB11转座酶结合到SB转座子载体上,通过转座机制将捕获载体插入到基因组中。The above-mentioned transposase expression vector of the present invention induces the expression of SB11 transposase only in the presence of DOX, and the SB11 transposase binds to the SB transposon carrier, and inserts the capture vector into the genome through a transposition mechanism.
本发明的第三方面,提供了一种用于小鼠胚胎干细胞的基因插入突变系统,所述的基因插入突变系统包括:A third aspect of the present invention provides a gene insertion mutation system for mouse embryonic stem cells, the gene insertion mutation system comprising:
(1)所述的基于睡美人SB转座子介导的polyA基因捕获载体;和(1) the polyA gene trapping vector mediated based on Sleeping Beauty SB transposon; and
(2)所述的可诱导的转座酶表达载体。(2) The inducible transposase expression vector.
本发明的第四方面,提供了上述所述的小鼠胚胎干细胞的基因插入突变方法,所述方法包括如下步骤:A fourth aspect of the present invention provides the above-mentioned gene insertion mutation method of mouse embryonic stem cells, said method comprising the steps of:
(a)插入突变系统的构建,包括所述的基于睡美人SB转座子介导的polyA基因捕获载体的构建和控制基因捕获载体发挥作用的所述转座酶表达载体的构建;(a) Construction of an insertion mutagenesis system, including the construction of the polyA gene trap vector mediated by the Sleeping Beauty SB transposon and the construction of the transposase expression vector that controls the function of the gene trap vector;
(b)小鼠胚胎干细胞遗传转化及细胞克隆筛选;(b) Genetic transformation of mouse embryonic stem cells and screening of cell clones;
(c)胚胎干细胞插入突变克隆整合位点分析;(c) Analysis of integration sites of embryonic stem cell insertion mutation clones;
(d)突变基因的表达分析。(d) Expression analysis of mutant genes.
进一步地,上述技术方案步骤(b)中突变载体导入胚胎干细胞的遗传转化具体为电转化,具体电转化过程如下:消化收集小鼠ES细胞,数量为1x107个细胞,突变载体DNA用量为25μg,采用Bio-rad电转仪进行电转,参数为:电压250,电容500,电阻∞,电转杯直径4mm,其中:所述突变载体包括基因捕获载体和转座酶表达载体,二者质量比1:1。Further, in step (b) of the above technical solution, the genetic transformation of introducing the mutant vector into embryonic stem cells is specifically electroporation, and the specific electroporation process is as follows: digest and collect mouse ES cells, the number of which is 1 ×107 cells, and the amount of mutant vector DNA used is 25 μg , using a Bio-rad electroporation instrument for electroporation, the parameters are: voltage 250, capacitance 500, resistance ∞, electroporation cup diameter 4mm, wherein: the mutation vector includes a gene capture vector and a transposase expression vector, and the mass ratio of the two is 1: 1.
进一步地,上述技术方案中的插入突变克隆筛选与插入位点分析,具体过程如下:细胞经电转后,培养液中加入1μg/ml Dox,诱导SB11转座酶的表达,24小时之后利用200μg/ml G418筛选转染细胞,每天更换一次培养基,筛选持续1周,对存活的mES单克隆扩大培养后,选取不同细胞克隆进行阳性克隆筛选及插入位点分析,将获得的片段进行测序,数据库比对分析得到捕获基因位点。Further, the insertion mutation clone screening and insertion site analysis in the above technical scheme, the specific process is as follows: After the cells are electroporated, 1 μg/ml Dox is added to the culture medium to induce the expression of SB11 transposase, and after 24 hours, 200 μg/ml Dox is used to induce the expression of SB11 transposase. Select transfected cells with ml G418, replace the medium once a day, and continue the screening for 1 week. After expanding the surviving mES monoclonal clones, select different cell clones for positive clone screening and insertion site analysis, and sequence the obtained fragments. Database Alignment analysis obtained capture gene loci.
优选地,上述技术方案中所述的阳性筛选引物序列包括:Preferably, the positive screening primer sequence described in the above technical scheme includes:
引物F:5’-GACCACCAAGCGAAACATCG-3’(SEQ ID No.3);Primer F: 5'-GACCACCAAGCGAAACATCG-3' (SEQ ID No.3);
引物R:5’-ATATCACGGGTAGCCAACGC-3’(SEQ ID No.4)。Primer R: 5'-ATATCACGGGTAGCCAACGC-3' (SEQ ID No. 4).
优选地,上述技术方案中所述的插入位点分析具体是采用Splinker PCR方法进行插入位点分析。Preferably, the insertion site analysis described in the above technical solution specifically uses the Splinker PCR method for insertion site analysis.
进一步地,上述技术方案步骤(d)所述的突变基因的表达分析,包括融合转录本分析,荧光定量PCR及Southern blot分析。Further, the expression analysis of the mutated gene described in step (d) of the technical solution includes analysis of fusion transcripts, fluorescent quantitative PCR and Southern blot analysis.
本发明的第五方面,提供了上述所述的基因插入突变方法的应用,主要用于对小鼠胚胎干细胞基因组进行大规模基因插入突变,批量筛选不同基因插入突变的单细胞克隆库,获得携带单一突变基因和具备全能分化能力的细胞克隆库,进而用于小鼠突变体的研制和基因功能研究。The fifth aspect of the present invention provides the application of the above-mentioned gene insertion mutation method, which is mainly used for performing large-scale gene insertion mutation on the mouse embryonic stem cell genome, screening single-cell clone libraries of different gene insertion mutations in batches, and obtaining Single mutant gene and cell clone library with totipotent differentiation ability are used for the development of mouse mutants and gene function research.
进一步地,本发明对携带单一基因突变的细胞克隆进行全能分化能力分析和建立单细胞克隆库,包括细胞克隆胚胎干细胞标记基因的表达检测和单细胞克隆的批量筛选。利用分子标记基因SSEA-1、OCT-4的抗体,进行免疫荧光染色,同时,荧光定量PCR检测分子标记基因SSEA-1、OCT-4、REX-1、NANOG的表达水平,并进行碱性磷酸酶染色和染色体核型分析,确定该突变方法获得的细胞克隆具有胚胎干细胞全能性。经分子标记检测、核型分析表明我们获得基因突变的小鼠ES细胞克隆具有较高的生殖腺嵌合能力,为进一步利用其制备遗传修饰的小鼠奠定了基础。Furthermore, the present invention analyzes the totipotent differentiation ability of cell clones carrying a single gene mutation and establishes a single-cell clone library, including the expression detection of embryonic stem cell marker genes of cell clones and batch screening of single-cell clones. Immunofluorescence staining was performed using antibodies against molecular marker genes SSEA-1 and OCT-4. At the same time, fluorescent quantitative PCR was used to detect the expression levels of molecular marker genes SSEA-1, OCT-4, REX-1 and NANOG, and alkaline phosphoric acid Enzyme staining and chromosomal karyotype analysis confirmed that the cell clones obtained by the mutation method had the totipotency of embryonic stem cells. Molecular marker detection and karyotype analysis showed that the mutant mouse ES cell clones we obtained had high gonadal chimerism, which laid the foundation for further use of them to prepare genetically modified mice.
上述技术方案中所述的利用携带单一突变基因的细胞克隆进行小鼠突变体研制,具体过程如下,通过囊胚显微注射的方法,将核型正常的胚胎干细胞系注入C57BL/6J小鼠的囊胚中,获得嵌合体小鼠,随后选择高嵌合度的小鼠与C57BL/6J小鼠杂交,获得携带突变基因的杂合子小鼠,再进行自交获得纯合子突变体小鼠。The specific process of developing mouse mutants using cell clones carrying a single mutant gene described in the above-mentioned technical scheme is as follows. By blastocyst microinjection, the embryonic stem cell line with normal karyotype is injected into the C57BL/6J mouse In blastocysts, chimeric mice were obtained, and then the mice with high chimerism were selected to be crossed with C57BL/6J mice to obtain heterozygous mice carrying the mutant gene, and then self-crossed to obtain homozygous mutant mice.
与现有技术相比,本发明的用于小鼠胚胎干细胞的基因插入突变系统及其突变方法和应用具有如下有益效果:Compared with the prior art, the gene insertion mutation system for mouse embryonic stem cells and its mutation method and application of the present invention have the following beneficial effects:
(1)本发明的基因插入突变系统包括基于SB转座子介导的polyA基因捕获载体和可诱导的转座酶表达载体,本发明利用睡美人转座子系统介导基因突变元件和基因捕获元件进行小鼠胚胎干细胞基因组整合突变,可实现对mES的基因快速有效的突变,有助于探讨基因在胚胎发育及疾病进程中的功能。(1) The gene insertion mutation system of the present invention includes polyA gene trapping vectors mediated by SB transposons and inducible transposase expression vectors, and the present invention utilizes the Sleeping Beauty transposon system to mediate gene mutation elements and gene trapping The element is used for genome integration mutation of mouse embryonic stem cells, which can realize rapid and effective mutation of mES genes, and help to explore the function of genes in embryonic development and disease process.
(2)本发明的小鼠胚胎干细胞的基因突变方法包括基于睡美人转座子的插入突变系统的构建、小鼠胚胎干细胞遗传转化及筛选、胚胎干细胞插入突变克隆整合位点分析、基因表达分析等。该基因突变方法的目的在于克服现有小鼠胚胎干细胞中基因捕获载体的不足,提供有效的基因突变方法。(2) The gene mutation method of mouse embryonic stem cells of the present invention includes the construction of an insertion mutation system based on Sleeping Beauty transposon, genetic transformation and screening of mouse embryonic stem cells, integration site analysis of embryonic stem cell insertion mutation clones, and gene expression analysis Wait. The purpose of the gene mutation method is to overcome the deficiency of the gene trapping carrier in the existing mouse embryonic stem cells and provide an effective gene mutation method.
附图说明Description of drawings
图1是本发明实施例1所述的基于睡美人SB转座子介导的polyA基因捕获载体的构建示意图;Figure 1 is a schematic diagram of the construction of the polyA gene capture vector mediated by the Sleeping Beauty SB transposon described in Example 1 of the present invention;
图2是本发明实施例2所述的可诱导的转座酶表达载体的构建示意图;Figure 2 is a schematic diagram of the construction of the inducible transposase expression vector described in Example 2 of the present invention;
图3是本发明实施例3、实施例4所述的电转化及插入突变克隆筛选过程示意图;3 is a schematic diagram of the electroporation and insertion mutation clone screening process described in Example 3 and Example 4 of the present invention;
图4是本发明实施例5所述的捕获基因表达分析图;其中:A-基因捕获载体插入基因组位点示意图,B-基因捕获载体与内源基因融合表达分析所用引物位置示意图,C-基因捕获载体与内源基因融合表达分析电泳图,D-捕获基因表达分析,E-Southern blot分析基因捕获载体基因组拷贝数;Fig. 4 is the expression analysis diagram of the captured gene described in Example 5 of the present invention; wherein: A-gene capture vector insertion genome site schematic diagram, B-gene capture vector and endogenous gene fusion expression analysis primer position schematic diagram, C-gene Capture vector and endogenous gene fusion expression analysis electropherogram, D-capture gene expression analysis, E-Southern blot analysis gene capture vector genome copy number;
图5是本发明实施例6所述的细胞全能性分析图,其中:A-免疫荧光染色检测ES标记基因表达,B-荧光定量PCR检测ES标记基因的表达,C-ES细胞克隆碱性磷酸酶活性分析,D-ES细胞克隆染色体核型分析。Fig. 5 is the cell pluripotency analysis diagram described in Example 6 of the present invention, wherein: A-immunofluorescence staining detects ES marker gene expression, B-fluorescence quantitative PCR detects ES marker gene expression, C-ES cell clone alkaline phosphate Enzyme activity analysis, D-ES cell clone chromosome karyotype analysis.
具体实施方式Detailed ways
下面通过具体的实施例和附图对本发明的技术方案做进一步详细地说明。以下实施例仅是本发明较佳的实施例,并非是对本发明做其他形式的限定,任何熟悉本专业的技术人员可能利用上述揭示的技术内容加以变更为同等变化的等效实施例。凡是未脱离本发明方案内容,依据本发明的技术实质对以下实施例所做的任何简单修改或等同变化,均落在本发明的保护范围内。The technical solution of the present invention will be described in further detail below through specific embodiments and accompanying drawings. The following embodiments are only preferred embodiments of the present invention, and are not intended to limit the present invention in other forms. Any person skilled in the art may use the technical content disclosed above to change into equivalent embodiments with equal changes. Any simple modifications or equivalent changes made to the following embodiments according to the technical essence of the present invention without departing from the solution content of the present invention fall within the protection scope of the present invention.
本发明各实施例中的实验方法,均按常规条件进行,具体参考如萨姆布鲁克等,分子克隆实验指南(第二版,1992年,科学出版社)中所述实验方法。The experimental methods in the various embodiments of the present invention are all carried out under conventional conditions, specifically referring to the experimental methods described in Sambrook et al., Molecular Cloning Experiment Guide (Second Edition, 1992, Science Press).
本发明通过构建含有筛选标记基因表达的基因突变载体和可诱导的介导基因突变载体进行基因组整合的表达载体,利用电转染方法,将两种载体共同导入小鼠胚胎干细胞中,通过诱导表达、细胞抗性筛选及细胞克隆鉴定分析,构建小鼠胚胎干细胞基因有效突变方法,获得携带单一突变基因和具备全能分化能力的细胞克隆。In the present invention, by constructing a gene mutation carrier containing screening marker gene expression and an inducible mediating gene mutation carrier for genome integration, the two vectors are co-introduced into mouse embryonic stem cells by electrotransfection method, and the expression vector is induced to express , Cell resistance screening and cell clone identification analysis, construct an effective mutation method for mouse embryonic stem cell genes, and obtain cell clones carrying a single mutant gene and possessing totipotent differentiation ability.
本发明的突变载体可随机插入小鼠胚胎干细胞的基因组中,包括外显子、内含子和非编码区。利用该方法,将突变载体插入整合在小鼠基因X的内含子中,干扰该内源基因的转录表达。该方法可随机插入小鼠胚胎干细胞的基因组中,运用该方法可对小鼠胚胎干细胞基因组进行大规模基因插入突变,获得携带单一突变基因和具备全能分化能力的细胞克隆库,并用于小鼠突变体的研制和基因功能研究。The mutation carrier of the present invention can be randomly inserted into the genome of mouse embryonic stem cells, including exons, introns and non-coding regions. Using this method, the mutant vector is inserted into the intron of the mouse gene X to interfere with the transcription and expression of the endogenous gene. This method can be randomly inserted into the genome of mouse embryonic stem cells. Using this method, large-scale gene insertion mutations can be performed on the genome of mouse embryonic stem cells, and a cell clone library carrying a single mutant gene and having the ability to differentiate can be obtained and used for mouse mutations. Body development and gene function studies.
实施例1Example 1
本实施例的一种基于睡美人SB转座子介导的polyA基因捕获载体,所述基因捕获载体包括:SA-EXON-SV40polyA-TT基因突变元件,SV40启动子,IRES-SD-ARE序列,筛选标记基因Neo,FRT序列,基因按SA-EXON-SV40PolyA-TT-FRT-SV40-Neo-FRT-IRES-SD-ARE的顺序串联。A polyA gene trap vector mediated by Sleeping Beauty SB transposon in this embodiment, said gene trap vector includes: SA-EXON-SV40 polyA-TT gene mutation element, SV40 promoter, IRES-SD-ARE sequence, Screening marker gene Neo, FRT sequence, gene in series in the order of SA-EXON-SV40PolyA-TT-FRT-SV40-Neo-FRT-IRES-SD-ARE.
上述所述的基于睡美人SB转座子介导的polyA基因捕获载体的构建方法如下:The method for constructing the polyA gene trapping vector mediated by the sleeping beauty SB transposon described above is as follows:
如图1所示,将pT2/polyA-trap载体(Song,Li et al.2012)进行AatII和SacII双酶切,将SA-EXON-SV40polyA-TT基因突变元件、SV40启动子、IRES-SD-ARE序列,筛选标记基因Neo进行连接,得到pT2/SA-EXON-SV40PolyA-TT-SV40-Neo-IRES-SD-ARE载体,随后将FRT序列通过PCR方法克隆到SV40-Neo两端,得到捕获载体pT2/SA-EXON-SV40PolyA-TT-FRT-SV40-Neo-FRT-IRES-SD-ARE,所述捕获载体的核酸序列如SEQ ID No.1所示。As shown in Figure 1, the pT2/polyA-trap vector (Song, Li et al.2012) was digested with AatII and SacII, and the SA-EXON-SV40polyA-TT gene mutation element, SV40 promoter, IRES-SD- ARE sequence, the screening marker gene Neo was connected to obtain the pT2/SA-EXON-SV40PolyA-TT-SV40-Neo-IRES-SD-ARE vector, and then the FRT sequence was cloned to both ends of SV40-Neo by PCR method to obtain the capture vector pT2/SA-EXON-SV40PolyA-TT-FRT-SV40-Neo-FRT-IRES-SD-ARE, the nucleic acid sequence of the capture vector is shown in SEQ ID No.1.
实施例2Example 2
本实施例的一种可诱导的转座酶表达载体,所述转座酶表达载体包括CMV启动子、Tet-on系统(rtTA及TRE元件)、SB11转座酶、βactin polyA序列,基因按PCMV-rtTA-TRE-SB11-βactin polyA的顺序串联。A kind of inducible transposase expression vector of the present embodiment, described transposase expression vector comprises CMV promoter, Tet-on system (rtTA and TRE element), SB11 transposase, βactin polyA sequence, gene presses PCMV Sequential concatenation of -rtTA-TRE-SB11-βactin polyA.
上述所述的转座酶表达载体的构建方法如下:The construction method of the above-mentioned transposase expression vector is as follows:
如图2所示,将TRE-miniCMV片段通过酶切AgeI/BsiWI双酶切位点克隆到载体PCMV-rtTA-SB11-βactin polyA上,得到所述的转座酶表达载体pCMV-rtTA-TRE-SB11-βactin polyA,所述转座酶表达载体的核酸序列如SEQ ID No.2所示。As shown in Figure 2, the TRE-miniCMV fragment was cloned into the vector pCMV-rtTA-SB11-βactin polyA by digesting the AgeI/BsiWI double restriction site to obtain the transposase expression vector pCMV-rtTA-TRE- SB11-βactin polyA, the nucleic acid sequence of the transposase expression vector is shown in SEQ ID No.2.
本实施例上述所述的转座酶表达载体只有在DOX存在的情况下诱导表达SB11转座酶,SB11转座酶结合到SB转座子载体上,通过转座机制将捕获载体插入到基因组中。The transposase expression vector described above in this example can only induce the expression of SB11 transposase in the presence of DOX, and the SB11 transposase is bound to the SB transposon vector, and the capture vector is inserted into the genome through the transposition mechanism .
实施例3小鼠胚胎干细胞培养与电转化Example 3 Mouse Embryonic Stem Cell Culture and Electrotransformation
小鼠胚胎干细胞(mES)系我们采用R1/E细胞系(ATCC:SCRC-1036TM),其培养条件是:37℃,5%二氧化碳,ES完全培养基组分:DMEM(invitrogen 12430),ES级FBS(biochromS4115),Glutamax(invitrogen 35050),NEAA(invitrogen 11140),LIF(MilliporeESG1107),β-Mer(invitrogen 21985)。Mouse embryonic stem cell (mES) line We use R1/E cell line (ATCC: SCRC-1036 TM ), the culture conditions are: 37°C, 5% carbon dioxide, ES complete medium components: DMEM (invitrogen 12430), ES Grade FBS (biochromS4115), Glutamax (invitrogen 35050), NEAA (invitrogen 11140), LIF (MilliporeESG1107), β-Mer (invitrogen 21985).
本实施例中R1/E所使用的饲养层细胞:MEF-G418(昆明白)。The feeder cells used for R1/E in this example: MEF-G418 (Kunming Bai).
本实施例突变载体(包括基因捕获载体和转座酶表达载体,二者质量比为1:1)导入小鼠胚胎干细胞的电转化,具体过程如图3所示:消化收集小鼠ES细胞,数量为1x107个细胞,突变载体DNA(包括基因捕获载体和转座酶表达载体,二者质量比为1:1)用量为25μg,采用Bio-rad电转仪进行电转(参数为:电压250,电容500,电阻∞,电转杯直径4mm)。In this example, the mutant vector (including gene trapping vector and transposase expression vector, the mass ratio of the two is 1:1) is introduced into the electrotransformation of mouse embryonic stem cells, the specific process is shown in Figure 3: mouse ES cells are digested and collected, The quantity is 1×10 7 cells, the amount of mutation vector DNA (including gene trap vector and transposase expression vector, the mass ratio of the two is 1:1) is 25 μg, and the electroporation is performed using a Bio-rad electroporator (parameters: voltage 250, Capacitance 500, resistance ∞, electric cup diameter 4mm).
实施例4基因捕获位点克隆Example 4 Gene trap site cloning
如图3所示,细胞经电转后,培养液中加入1μg/ml Dox,诱导SB11转座酶的表达,24小时之后利用200μg/ml G418筛选转染细胞,每天更换一次培养基,筛选持续1周,对存活的mES单克隆扩大培养后,选取不同细胞克隆进行阳性克隆筛选及插入位点分析,阳性筛选引物序列:As shown in Figure 3, after the cells were electroporated, 1 μg/ml Dox was added to the culture medium to induce the expression of SB11 transposase. After 24 hours, the transfected cells were screened with 200 μg/ml G418, and the medium was changed once a day, and the screening lasted for 1 hour. Zhou, after expanding the culture of the surviving mES monoclonal, select different cell clones for positive clone screening and insertion site analysis, positive screening primer sequence:
引物F:5’-GACCACCAAGCGAAACATCG-3’(SEQ ID No.3);Primer F: 5'-GACCACCAAGCGAAACATCG-3' (SEQ ID No.3);
引物R:5’-ATATCACGGGTAGCCAACGC-3’(SEQ ID No.4)。Primer R: 5'-ATATCACGGGTAGCCAACGC-3' (SEQ ID No. 4).
采用Splinker PCR方法进行插入位点分析,将获得的片段进行测序,数据库比对分析得到捕获基因位点。所用引物如下:The insertion site was analyzed by Splinker PCR method, the obtained fragment was sequenced, and the captured gene site was obtained by database comparison analysis. The primers used are as follows:
Long stand:5’-CGAAGAGTAACCGTTGCTAGGAGAGACCGTGGCTGAATGAGACTGGTLong stand: 5'-CGAAGAGTAACCGTTGCTAGGAGAGACCGTGGCTGAATGAGACTGGT
GTCGACACTAGTGG-3’(SEQ ID No.5);GTCGACACTAGTGG-3' (SEQ ID No. 5);
Short Sau3aI:5’-GATCCCACTAGTGTCGACACCAGTCTCTAATTTTTTTTTTCAAAAAAA-3’(SEQ ID No.6);Short Sau3aI: 5'-GATCCCACTAGTGTCGACACCAGTCTCTAATTTTTTTTTTCAAAAAAAA-3' (SEQ ID No. 6);
Splink1:5’-CGAAGAGTAACCGTTGCTAGGAGAGACC-3’(SEQ ID No.7);Splink1: 5'-CGAAGAGTAACCGTTGCTAGGAGAGACC-3' (SEQ ID No.7);
Splink2:5’-GTGGCTGAATGAGACTGGTGTCGAC-3’(SEQ ID No.8);Splink2: 5'-GTGGCTGAATGAGACTGGTGTCGAC-3' (SEQ ID No.8);
L2:5’-TTAAAGGCACAGTCAACTTAGTGTATGTAAACTTCTG-3’(SEQ ID No.9);L2: 5'-TTAAAGGCACAGTCAACTTAGTGTATGTAAACTTCTG-3' (SEQ ID No. 9);
L3:5’-TGAAAAACGAGTTTTAATGACTCCAACTTAAG-3’(SEQ ID No.10);L3: 5'-TGAAAAACGAGTTTTAATGACTCCAACTTAAG-3' (SEQ ID No. 10);
R1:5’-CTAACTGACCTAAGACAGGGAATTTTTACTAGGATT-3’(SEQ ID No.11);R1: 5'-CTAACTGACCTAAGACAGGGAATTTTTACTAGGATT-3' (SEQ ID No. 11);
R2:5’-TAAGGTGTATGTAAACTTCCGACTTCAACTG-3’(SEQ ID No.12)。R2: 5'-TAAGGTGTATGTAAACTTCCGACTTCAACTG-3' (SEQ ID No. 12).
表1是本发明实施例4的基因捕获位点分析图Table 1 is the gene trap site analysis diagram of Example 4 of the present invention
实施例5捕获基因表达分析Example 5 capture gene expression analysis
基因表达分析包括融合转录本分析,荧光定量PCR及Southern blot分析。我们筛选得到的细胞克隆中有一个是插入到syngap1基因的第3个内含子中(图4A),我们将该克隆命名为syngap1+/-细胞克隆,采用引物X(图4B),包括:Gene expression analysis includes fusion transcript analysis, fluorescent quantitative PCR and Southern blot analysis. One of the cell clones obtained by our screening was inserted into the third intron of the syngap1 gene (Figure 4A), and we named the clone as syngap1 +/- cell clone, using primer X (Figure 4B), including:
F:5’-ACACCCCCTCTGATCCGCG-3’(SEQ ID No.13);F: 5'-ACACCCCCTCTGATCCGCG-3' (SEQ ID No.13);
R',5’-CGGCCGCTCGTACGTCACTAATTC-3’(SEQ ID No.14)及引物序列进行转录本融合表达分析,引物X证实捕获载体中SA-EXON与syngap1基因的外显子3发生了融合转录(图4C)。随后我们定量了内源基因syngap1的表达情况,定量引物序列如下:R', 5'-CGGCCGCTCGTACGTCACTAATTC-3' (SEQ ID No.14) and primer sequences were used for transcript fusion expression analysis, and primer X confirmed the fusion transcription of SA-EXON and exon 3 of syngap1 gene in the capture vector (Fig. 4C). Then we quantified the expression of the endogenous gene syngap1, and the quantitative primer sequences are as follows:
F:5’-ACACCCCCTCTGATCCGCG-3’(SEQ ID No.13);F: 5'-ACACCCCCTCTGATCCGCG-3' (SEQ ID No.13);
R:5’-TCCATGCTGTACTGTTTCCCCCC-3’(SEQ ID No.15)发现在syngap1+/-细胞克隆中,syngap1基因的表达量下降了近50%左右(图4D)。对syngap1+/-细胞克隆的基因组进行BglII,EcoRI酶切,用Southern blot分析,发现该捕获载体在基因组中有一个拷贝,该结果与syngap1基因的表达量一致(图4E)。以上结果说明在ES细胞中,该捕获载体能够有效的对内源基因进行敲降突变。R: 5'-TCCATGCTGTACTGTTTCCCCCCC-3' (SEQ ID No. 15) It was found that in syngap1 +/- cell clones, the expression of syngap1 gene decreased by about 50% ( FIG. 4D ). The genome of the syngap1 +/- cell clone was digested with BglII and EcoRI, and analyzed by Southern blot. It was found that there was one copy of the capture vector in the genome, which was consistent with the expression level of the syngap1 gene (Fig. 4E). The above results indicate that in ES cells, the capture vector can effectively knock down and mutate endogenous genes.
实施例6细胞全能性分析。Example 6 Cell pluripotency analysis.
免疫荧光染色检测ES标记基因SSEA-1,OCT-4基因的表达,荧光显色结果显示SSEA-1,OCT-4在该syngap1+/-细胞克隆存在表达,证实syngap1+/-细胞克隆具有小鼠胚胎干细胞全能活性。具体操作过程如下,Immunofluorescence staining was used to detect the expression of ES marker genes SSEA-1 and OCT-4, and the results of fluorescent color development showed that SSEA-1 and OCT-4 were expressed in the syngap1 +/- cell clone, which confirmed that the syngap1 +/- cell clone had small Totipotent activity of mouse embryonic stem cells. The specific operation process is as follows,
(1)细胞生长在24孔板内,PBS洗;(1) Cells were grown in 24-well plates and washed with PBS;
(2)4%多聚甲醛固定20分钟,PBS洗;(2) Fix with 4% paraformaldehyde for 20 minutes, wash with PBS;
(3)0.5%Triton X-100透膜10分钟,0.1%BSA洗;(3) 0.5% Triton X-100 permeate the membrane for 10 minutes, wash with 0.1% BSA;
(4)37℃封闭30分钟,(封闭液10%山羊血清+0.1%Triton X-100+1%BSA);(4) Block at 37°C for 30 minutes, (blocking solution 10% goat serum + 0.1% Triton X-100 + 1% BSA);
(5)孵育一抗SSEA-1 20μg/ml(R&D Systems,USA)和OCT-4 20μg/ml(Abcam,UK),4℃过夜;(5) Incubate primary antibody SSEA-1 20 μg/ml (R&D Systems, USA) and OCT-4 20 μg/ml (Abcam, UK), overnight at 4°C;
(6)0.1%BSA洗;(6) Wash with 0.1% BSA;
(7)37℃孵育二抗30分钟,羊抗鼠-Cy3和羊抗兔-FITC(BOSTER,China);(7) Incubate the secondary antibody at 37°C for 30 minutes, goat anti-mouse-Cy3 and goat anti-rabbit-FITC (BOSTER, China);
(8)0.1%BSA洗;(8) Wash with 0.1% BSA;
(9)室温复染DAPI 5分钟;(9) Counterstain DAPI for 5 minutes at room temperature;
(10)荧光显微镜观察拍照(Leica DMI6000B/DMi8)。(10) Fluorescence microscope observation and photography (Leica DMI6000B/DMi8).
采用荧光定量PCR方法对小鼠胚胎干细胞标记性基因进行定量检测,定量PCR结果显示syngap1+/-细胞克隆中干细胞标记基因SSEA-1,OCT-4,Rex-1,NANOG基因表达不受影响,证实syngap1+/-细胞克隆具有小鼠胚胎干细胞全能活性(图5B)。所需引物序列如下:The mouse embryonic stem cell marker genes were quantitatively detected by fluorescent quantitative PCR. The quantitative PCR results showed that the expression of stem cell marker genes SSEA-1, OCT-4, Rex-1, and NANOG in syngap1 +/- cell clones were not affected. Syngap1 +/- cell clones were confirmed to have mouse embryonic stem cell totipotent activity (Fig. 5B). The required primer sequences are as follows:
ssea1f3:5’-CGGACCGACTCGGATGTC-3’(SEQ ID No.16);ssea1f3: 5'-CGGACCGACTCGGATGTC-3' (SEQ ID No. 16);
ssea1r3:5’-CCGACTCAGCTGGTGGTAGTAA-3’(SEQ ID No.17);ssea1r3: 5'-CCGACTCAGCTGGTGGTAGTAA-3' (SEQ ID No. 17);
oct4f:5’-TTCCCTCTGTTCCCGTCACT-3’(SEQ ID No.18);oct4f: 5'-TTCCCTCTGTTCCCGTCACT-3' (SEQ ID No. 18);
oct4r:5’-TGGTGCCTCAGTTTGAATGC-3’(SEQ ID No.19);oct4r: 5'-TGGTGCCTCAGTTTGAATGC-3' (SEQ ID No. 19);
Rex-1f:5’-CCGTATCAGTGCACGTTCGA-3’(SEQ ID No.20);Rex-1f: 5'-CCGTATCAGTGCACGTTCGA-3' (SEQ ID No. 20);
Rex-1r:TGGGTGCGCAAGTTGAAA-3’(SEQ ID No.21);Rex-1r: TGGGTGCGCAAGTTGAAA-3' (SEQ ID No. 21);
Nanog f:5’-CCTCATCAATGCCTGCAGTTT-3’(SEQ ID No.22);Nanog f: 5'-CCTCATCAATGCCTGCAGTTT-3' (SEQ ID No.22);
Nanog r:5’-CTCAGTAGCAGACCCTTGTAAGCA-3’(SEQ ID No.23);Nanog r: 5'-CTCAGTAGCAGACCCTTGTAAGCA-3' (SEQ ID No. 23);
GAPDH f:5’-ACATCATCCCTGCATCCACT-3’(SEQ ID No.24);GAPDH f: 5'-ACATCATCCCTGCATCCACT-3' (SEQ ID No. 24);
GAPDH r:5’-AGATCCACGACGGACACATT-3’(SEQ ID No.25);GAPDH r: 5'-AGATCCACGACGGACACATT-3' (SEQ ID No. 25);
小鼠胚胎干细胞培养5天后,按照碱性磷酸酶检测试剂盒说明书进行检测,检测结果显示syngap1+/-具有碱性磷酸酶活性,而阴性对照MEF细胞中并未检测到碱性磷酸酶活性(图5C)。After the mouse embryonic stem cells were cultured for 5 days, they were tested according to the instructions of the alkaline phosphatase detection kit. The test results showed that syngap1 +/- had alkaline phosphatase activity, while no alkaline phosphatase activity was detected in the negative control MEF cells ( Figure 5C).
核型分析表明syngap1+/-细胞克隆具有正常的XY型染色体(图5D),说明我们获得基因突变的小鼠ES细胞克隆具有较高的生殖腺嵌合能力,为进一步利用其制备遗传修饰的小鼠奠定了基础。染色体和性分析过程如下:Karyotype analysis showed that syngap1 +/- cell clones had normal XY-type chromosomes (Fig. 5D), indicating that the mutant mouse ES cell clones we obtained had high gonadal chimerism, and we could use them to prepare genetically modified small Rats laid the groundwork. Chromosomal and sex analysis procedures are as follows:
取一个90%以上融合的长满细胞的T25瓶,提前3小时加入秋水仙素;Take a T25 flask full of cells that is more than 90% confluent, and add colchicine 3 hours in advance;
(1)37℃温浴KCl低渗液,预冷甲醇-冰醋酸固定液;(1) KCl hypotonic solution in warm bath at 37°C, pre-cooled methanol-glacial acetic acid fixative solution;
(2)消化细胞,吹打均匀,转入60mm培养皿,37℃贴壁1小时后轻轻倾斜培养皿,取上清,移入15ml离心管内;(2) Digest the cells, pipette evenly, transfer to a 60mm culture dish, and gently tilt the culture dish after adhering to the wall at 37°C for 1 hour, take the supernatant, and transfer it into a 15ml centrifuge tube;
(3)12000rpm离心5分钟;(3) Centrifuge at 12000rpm for 5 minutes;
(4)去上清,留少量残液混匀,加入8ml已温浴KCl低渗液,上下颠倒混匀,37℃温浴30分钟,中间上下混匀一次;(4) Remove the supernatant, leave a small amount of residual liquid and mix well, add 8ml of warmed KCl hypotonic solution, mix upside down, warm bath at 37°C for 30 minutes, mix up and down once in the middle;
(5)加入1ml预冷甲醇-冰醋酸固定液终止低渗,上下颠倒混匀,1400rpm离心3分钟;(5) Add 1ml of pre-cooled methanol-glacial acetic acid fixative solution to stop hypotonicity, mix upside down, and centrifuge at 1400rpm for 3 minutes;
(6)去上清,留少量残液重悬细胞,加入10ml预冷甲醇-冰醋酸固定液,上下颠倒混匀,室温放置20分钟,中间上下混匀一次;(6) Remove the supernatant, leave a small amount of residual liquid to resuspend the cells, add 10ml of pre-cooled methanol-glacial acetic acid fixative, mix up and down, place at room temperature for 20 minutes, and mix up and down once in the middle;
(7)1200rpm离心5分钟,重复步骤(7)2次,第二次室温放置10分钟;(7) Centrifuge at 1200rpm for 5 minutes, repeat step (7) twice, and place at room temperature for 10 minutes for the second time;
(8)等待期间取适量泡在无水乙醇的载玻片,双蒸水洗,将玻片放入装有沸水的烧杯中,加热载玻片;(8) During the waiting period, take an appropriate amount of slides soaked in absolute ethanol, wash with double distilled water, put the slides into a beaker filled with boiling water, and heat the slides;
(9)1200rpm离心5分钟,去上清,留少量残液重悬细胞;(9) Centrifuge at 1200rpm for 5 minutes, remove the supernatant, and leave a small amount of residual liquid to resuspend the cells;
(10)将载玻片放于地面,其下垫适量吸水纸,取适量细胞悬液,一定高度滴下,随后取载玻片在酒精灯上微烤,过夜干燥载玻片;(10) Put the glass slide on the ground, put an appropriate amount of absorbent paper under it, take an appropriate amount of cell suspension, drop it at a certain height, then take the glass slide and bake it on an alcohol lamp, and dry the slide overnight;
(11)Giemsa染色1小时,洗片,镜下观察拍照。(11) Giemsa staining for 1 hour, wash the slides, observe and take pictures under the microscope.
序列表sequence listing
<110> 中国科学院水生生物研究所<110> Institute of Hydrobiology, Chinese Academy of Sciences
<120> 一种用于小鼠胚胎干细胞的基因插入突变系统及其突变方法和应用<120> A gene insertion mutation system for mouse embryonic stem cells and its mutation method and application
<130> 无<130> None
<160> 25<160> 25
<170> SIPOSequenceListing 1.0<170> SIPOSequenceListing 1.0
<210> 1<210> 1
<211> 5968<211> 5968
<212> DNA<212>DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence (Artificial Sequence)
<400> 1<400> 1
caaggcgatt aagttgggta acgccagggt tttcccagtc acgacgttgt aaaacgacgg 60caaggcgatt aagttgggta acgccagggt tttcccagtc acgacgttgt aaaacgacgg 60
ccagtgagcg cgcgtaatac gactcactat agggcgaatt ggagctcgga tccctataca 120ccagtgagcg cgcgtaatac gactcactat agggcgaatt ggagctcgga tccctataca 120
gttgaagtcg gaagtttaca tacacttaag ttggagtcat taaaactcgt ttttcaacta 180gttgaagtcg gaagtttaca tacacttaag ttggagtcat taaaactcgt ttttcaacta 180
ctccacaaat ttcttgttaa caaacaatag ttttggcaag tcagttagga catctacttt 240ctccacaaat ttcttgttaa caaacaatag ttttggcaag tcagttagga catctacttt 240
gtgcatgaca caagtcattt ttccaacaat tgtttacaga cagattattt cacttataat 300gtgcatgaca caagtcattt ttccaacaat tgtttacaga cagattattt cacttataat 300
tcactgtatc acaattccag tgggtcagaa gtttacatac actaagttga ctgtgccttt 360tcactgtatc acaattccag tgggtcagaa gtttacatac actaagttga ctgtgccttt 360
aaacagcttg gaaaattcca gaaaatgatg tcatggcttt agaagcttgc tagcgattgc 420aaacagcttg gaaaattcca gaaaatgatg tcatggcttt agaagcttgc tagcgattgc 420
agcacgaaac aggaagctga ctccacatgg tcacatgctc actgaagtgt tgacttccct 480agcacgaaac aggaagctga ctccacatgg tcacatgctc actgaagtgt tgacttccct 480
gacagctgtg cactttctaa accggttttc tcattcattt acagttcagc cgatgatgaa 540gacagctgtg cactttctaa accggttttc tcattcattt acagttcagc cgatgatgaa 540
attgccgcac tggttgttag caacgtagcc ggtatgtgaa tgatgaatta gtgacgtacg 600attgccgcac tggttgttag caacgtagcc ggtatgtgaa tgatgaatta gtgacgtacg 600
agcggccgcg actctagatc ataatcagcc ataccacatt tgtagaggtt ttacttgctt 660agcggccgcg actctagatc ataatcagcc ataccacatt tgtagaggtt ttacttgctt 660
taaaaaacct cccacacctc cccctgaacc tgaaacataa aatgaatgca attgttgttg 720taaaaaacct cccacacctc cccctgaacc tgaaacataa aatgaatgca attgttgttg 720
ttaacttgtt tattgcagct tataatggtt acaaataaag caatagcatc acaaatttca 780ttaacttgtt tattgcagct tataatggtt acaaataaag caatagcatc acaaatttca 780
caaataaagc atttttttca ctgcgaattc tttttatttt attttatttt taattttttt 840caaataaagc atttttttca ctgcgaattc tttttatttt atttttttt taattttttt 840
ttgacgtcga agttcctatt ccgaagttcc tattctctag aaagtatagg aacttcccag 900ttgacgtcga agttcctatt ccgaagttcc tattctctag aaagtatagg aacttcccag 900
gcaggcagaa gtatgcaaag catgcatctc aattagtcag caaccaggtg tggaaagtcc 960gcaggcagaa gtatgcaaag catgcatctc aattagtcag caaccaggtg tggaaagtcc 960
ccaggctccc cagcaggcag aagtatgcaa agcatgcatc tcaattagtc agcaaccata 1020ccaggctccc cagcaggcag aagtatgcaa agcatgcatc tcaattagtc agcaaccata 1020
gtcccgcccc taactccgcc catcccgccc ctaactccgc ccagttccgc ccattctccg 1080gtcccgcccc taactccgcc catcccgccc ctaactccgc ccagttccgc ccattctccg 1080
ccccatggct gactaatttt ttttatttat gcagaggccg aggccgcctc ggcctctgag 1140ccccatggct gactaatttt ttttttat gcagaggccg aggccgcctc ggcctctgag 1140
ctattccaga agtagtgagg aggctttttt ggaggcctag gcttttgcaa aaagctcccg 1200ctattccaga agtagtgagg aggctttttt ggaggcctag gcttttgcaa aaagctcccg 1200
ggagcttgga tatccatttt cggatctgat caagagacag gatgaggatc gtttcgcatg 1260ggagcttgga tatccatttt cggatctgat caagagacag gatgaggatc gtttcgcatg 1260
attgaacaag atggattgca cgcaggttct ccggccgctt gggtggagag gctattcggc 1320attgaacaag atggattgca cgcaggttct ccggccgctt gggtggagag gctattcggc 1320
tatgactggg cacaacagac aatcggctgc tctgatgccg ccgtgttccg gctgtcagcg 1380tatgactggg cacaacagac aatcggctgc tctgatgccg ccgtgttccg gctgtcagcg 1380
caggggcgcc cggttctttt tgtcaagacc gacctgtccg gtgccctgaa tgaactgcag 1440caggggcgcc cggttctttt tgtcaagacc gacctgtccg gtgccctgaa tgaactgcag 1440
gacgaggcag cgcggctatc gtggctggcc acgacgggcg ttccttgcgc agctgtgctc 1500gacgaggcag cgcggctatc gtggctggcc acgacgggcg ttccttgcgc agctgtgctc 1500
gacgttgtca ctgaagcggg aagggactgg ctgctattgg gcgaagtgcc ggggcaggat 1560gacgttgtca ctgaagcggg aagggactgg ctgctattgg gcgaagtgcc ggggcaggat 1560
ctcctgtcat ctcaccttgc tcctgccgag aaagtatcca tcatggctga tgcaatgcgg 1620ctcctgtcat ctcaccttgc tcctgccgag aaagtatcca tcatggctga tgcaatgcgg 1620
cggctgcata cgcttgatcc ggctacctgc ccattcgacc accaagcgaa acatcgcatc 1680cggctgcata cgcttgatcc ggctacctgc ccattcgacc accaagcgaa acatcgcatc 1680
gagcgagcac gtactcggat ggaagccggt cttgtcgatc aggatgatct ggacgaagag 1740gagcgagcac gtactcggat ggaagccggt cttgtcgatc aggatgatct ggacgaagag 1740
catcaggggc tcgcgccagc cgaactgttc gccaggctca aggcgcgcat gcccgacggc 1800catcaggggc tcgcgccagc cgaactgttc gccaggctca aggcgcgcat gcccgacggc 1800
gaggatctcg tcgtgaccca tggcgatgcc tgcttgccga atatcatggt ggaaaatggc 1860gaggatctcg tcgtgaccca tggcgatgcc tgcttgccga atatcatggt ggaaaatggc 1860
cgcttttctg gattcatcga ctgtggccgg ctgggtgtgg cggaccgcta tcaggacata 1920cgcttttctg gattcatcga ctgtggccgg ctgggtgtgg cggaccgcta tcaggacata 1920
gcgttggcta cccgtgatat tgctgaagag cttggcggcg aatgggctga ccgcttcctc 1980gcgttggcta cccgtgatat tgctgaagag cttggcggcg aatgggctga ccgcttcctc 1980
gtgctttacg gtatcgccgc tcccgattcg cagcgcatcg ccttctatcg ccttcttgac 2040gtgctttacg gtatcgccgc tcccgattcg cagcgcatcg ccttctatcg ccttcttgac 2040
gagttcttct gagaagttcc tattccgaag ttcctattct ctagaaagta taggaacttc 2100gagttcttct gagaagttcc tattccgaag ttcctattct ctagaaagta taggaacttc 2100
actagtgccc ctctccctcc ccccccccta acgttactgg ccgaagccgc ttggaataag 2160actagtgccc ctctccctcc ccccccccta acgttactgg ccgaagccgc ttggaataag 2160
gccggtgtgc gtttgtctat atgttatttt ccaccatatt gccgtctttt ggcaatgtga 2220gccggtgtgc gtttgtctat atgttatttt ccaccacatatt gccgtctttt ggcaatgtga 2220
gggcccggaa acctggccct gtcttcttga cgagcattcc taggggtctt tcccctctcg 2280gggcccggaa acctggccct gtcttcttga cgagcattcc taggggtctt tcccctctcg 2280
ccaaaggaat gcaaggtctg ttgaatgtcg tgaaggaagc agttcctctg gaagcttctt 2340ccaaaggaat gcaaggtctg ttgaatgtcg tgaaggaagc agttcctctg gaagcttctt 2340
gaagacaaac aacgtctgta gcgacccttt gcaggcagcg gaacccccca cctggcgaca 2400gaagacaaac aacgtctgta gcgacccttt gcaggcagcg gaacccccca cctggcgaca 2400
ggtgcctctg cggccaaaag ccacgtgtat aagatacacc tgcaaaggcg gcacaacccc 2460ggtgcctctg cggccaaaag ccacgtgtat aagatacacc tgcaaaggcg gcacaaccccc 2460
agtgccacgt tgtgagttgg atagttgtgg aaagagtcaa atggctctcc tcaagcgtat 2520agtgccacgt tgtgagttgg atagttgtgg aaagagtcaa atggctctcc tcaagcgtat 2520
tcaacaaggg gctgaaggat gcccagaagg taccccattg tatgggatct gatctggggc 2580tcaacaaggg gctgaaggat gcccagaagg taccccattg tatgggatct gatctggggc 2580
ctcggtgcac atgctttaca tgtgtttagt cgaggttaaa aaaacgtcta ggccccccga 2640ctcggtgcac atgctttaca tgtgtttagt cgaggttaaa aaaacgtcta ggccccccga 2640
accacgggga cgtggttttc ctttgaaaaa cacgatgata atatcgccac aaccatggac 2700accacgggga cgtggttttc ctttgaaaaa cacgatgata atatcgccac aaccatggac 2700
catgcaccat gtacaaaccc ccccaaaccg aaggtgagtt gatctttaag ctttttacat 2760catgcaccat gtacaaaccc ccccaaaccg aaggtgagtt gatctttaag ctttttacat 2760
tttcagctcg catatatcaa ttcgaacgtt taattagaat gtttaaataa agctagatta 2820tttcagctcg catatatcaa ttcgaacgtt taattagaat gtttaaataa agctagatta 2820
aatgattagg ctcagttacc ggtctttttt ttctcattta cgtagatcta gcttgtggaa 2880aatgattagg ctcagttacc ggtctttttt ttctcattta cgtagatcta gcttgtggaa 2880
ggctactcga aatgtttgac ccaagttaaa caatttaaag gcaatgctac caaatactaa 2940ggctactcga aatgtttgac ccaagttaaa caatttaaag gcaatgctac caaatactaa 2940
ttgagtgtat gtaaacttct gacccactgg gaatgtgatg aaagaaataa aagctgaaat 3000ttgagtgtat gtaaacttct gacccactgg gaatgtgatg aaagaaataa aagctgaaat 3000
gaatcattct ctctactatt attctgatat ttcacattct taaaataaag tggtgatcct 3060gaatcattct ctctactatt attctgatat ttcacattct taaaataaag tggtgatcct 3060
aactgaccta agacagggaa tttttactag gattaaatgt caggaattgt gaaaaagtga 3120aactgaccta aagacagggaa tttttactag gattaaatgt caggaattgt gaaaaagtga 3120
gtttaaatgt atttggctaa ggtgtatgta aacttccgac ttcaactgta tagggatcct 3180gtttaaatgt atttggctaa ggtgtatgta aacttccgac ttcaactgta tagggatcct 3180
ctagctagag tcgacctcga gggggggccc ggtacccagc ttttgttccc tttagtgagg 3240ctagctagag tcgacctcga gggggggccc ggtacccagc ttttgttccc tttagtgagg 3240
gttaatttcg agcttggcgt aatcatggtc atagctgttt cctgtgtgaa attgttatcc 3300gttaatttcg agcttggcgt aatcatggtc atagctgttt cctgtgtgaa attgttatcc 3300
gctcacaatt ccacacaaca tacgagccgg aagcataaag tgtaaagcct ggggtgccta 3360gctcacaatt ccacacaaca tacgagccgg aagcataaag tgtaaagcct ggggtgccta 3360
atgagtgagc taactcacat taattgcgtt gcgctcactg cccgctttcc agtcgggaaa 3420atgagtgagc taactcacat taattgcgtt gcgctcactg cccgctttcc agtcgggaaa 3420
cctgtcgtgc cagctgcatt aatgaatcgg ccaacgcgcg gggagaggcg gtttgcgtat 3480cctgtcgtgc cagctgcatt aatgaatcgg ccaacgcgcg gggagaggcg gtttgcgtat 3480
tgggcgctct tccgcttcct cgctcactga ctcgctgcgc tcggtcgttc ggctgcggcg 3540tgggcgctct tccgcttcct cgctcactga ctcgctgcgc tcggtcgttc ggctgcggcg 3540
agcggtatca gctcactcaa aggcggtaat acggttatcc acagaatcag gggataacgc 3600agcggtatca gctcactcaa aggcggtaat acggttatcc acagaatcag gggataacgc 3600
aggaaagaac atgtgagcaa aaggccagca aaaggccagg aaccgtaaaa aggccgcgtt 3660aggaaagaac atgtgagcaa aaggccagca aaaggccagg aaccgtaaaa aggccgcgtt 3660
gctggcgttt ttccataggc tccgcccccc tgacgagcat cacaaaaatc gacgctcaag 3720gctggcgttt ttccataggc tccgcccccc tgacgagcat cacaaaaatc gacgctcaag 3720
tcagaggtgg cgaaacccga caggactata aagataccag gcgtttcccc ctggaagctc 3780tcagaggtgg cgaaacccga caggactata aagataccag gcgtttcccc ctggaagctc 3780
cctcgtgcgc tctcctgttc cgaccctgcc gcttaccgga tacctgtccg cctttctccc 3840cctcgtgcgc tctcctgttc cgaccctgcc gcttaccgga tacctgtccg cctttctccc 3840
ttcgggaagc gtggcgcttt ctcatagctc acgctgtagg tatctcagtt cggtgtaggt 3900ttcgggaagc gtggcgcttt ctcatagctc acgctgtagg tatctcagtt cggtgtaggt 3900
cgttcgctcc aagctgggct gtgtgcacga accccccgtt cagcccgacc gctgcgcctt 3960cgttcgctcc aagctgggct gtgtgcacga accccccgtt cagcccgacc gctgcgcctt 3960
atccggtaac tatcgtcttg agtccaaccc ggtaagacac gacttatcgc cactggcagc 4020atccggtaac tatcgtcttg agtccaaccc ggtaagacac gacttatcgc cactggcagc 4020
agccactggt aacaggatta gcagagcgag gtatgtaggc ggtgctacag agttcttgaa 4080agccactggt aacaggatta gcagagcgag gtatgtaggc ggtgctacag agttcttgaa 4080
gtggtggcct aactacggct acactagaag gacagtattt ggtatctgcg ctctgctgaa 4140gtggtggcct aactacggct acactagaag gacagtattt ggtatctgcg ctctgctgaa 4140
gccagttacc ttcggaaaaa gagttggtag ctcttgatcc ggcaaacaaa ccaccgctgg 4200gccagttacc ttcggaaaaa gagttggtag ctcttgatcc ggcaaacaaa ccaccgctgg 4200
tagcggtggt ttttttgttt gcaagcagca gattacgcgc agaaaaaaag gatctcaaga 4260tagcggtggt ttttttgttt gcaagcagca gattacgcgc agaaaaaaag gatctcaaga 4260
agatcctttg atcttttcta cggggtctga cgctcagtgg aacgaaaact cacgttaagg 4320agatcctttg atcttttcta cggggtctga cgctcagtgg aacgaaaact cacgttaagg 4320
gattttggtc atgagattat caaaaaggat cttcacctag atccttttaa attaaaaatg 4380gattttggtc atgagattat caaaaaggat cttcacctag atccttttaa attaaaaatg 4380
aagttttaaa tcaatctaaa gtatatatga gtaaacttgg tctgacagtt accaatgctt 4440aagttttaaa tcaatctaaa gtatatatga gtaaacttgg tctgacagtt accaatgctt 4440
aatcagtgag gcacctatct cagcgatctg tctatttcgt tcatccatag ttgcctgact 4500aatcagtgag gcacctatct cagcgatctg tctatttcgt tcatccatag ttgcctgact 4500
ccccgtcgtg tagataacta cgatacggga gggcttacca tctggcccca gtgctgcaat 4560ccccgtcgtg tagataacta cgatacggga gggcttacca tctggcccca gtgctgcaat 4560
gataccgcga gacccacgct caccggctcc agatttatca gcaataaacc agccagccgg 4620gataccgcga gacccacgct caccggctcc agattatca gcaataaacc agccagccgg 4620
aagggccgag cgcagaagtg gtcctgcaac tttatccgcc tccatccagt ctattaattg 4680aagggccgag cgcagaagtg gtcctgcaac tttatccgcc tccatccagt ctattaattg 4680
ttgccgggaa gctagagtaa gtagttcgcc agttaatagt ttgcgcaacg ttgttgccat 4740ttgccgggaa gctagagtaa gtagttcgcc agttaatagt ttgcgcaacg ttgttgccat 4740
tgctacaggc atcgtggtgt cacgctcgtc gtttggtatg gcttcattca gctccggttc 4800tgctacaggc atcgtggtgt cacgctcgtc gtttggtatg gcttcattca gctccggttc 4800
ccaacgatca aggcgagtta catgatcccc catgttgtgc aaaaaagcgg ttagctcctt 4860ccaacgatca aggcgagtta catgatcccc catgttgtgc aaaaaagcgg ttagctcctt 4860
cggtcctccg atcgttgtca gaagtaagtt ggccgcagtg ttatcactca tggttatggc 4920cggtcctccg atcgttgtca gaagtaagtt ggccgcagtg ttatcactca tggttatggc 4920
agcactgcat aattctctta ctgtcatgcc atccgtaaga tgcttttctg tgactggtga 4980agcactgcat aattctctta ctgtcatgcc atccgtaaga tgcttttctg tgactggtga 4980
gtactcaacc aagtcattct gagaatagtg tatgcggcga ccgagttgct cttgcccggc 5040gtactcaacc aagtcattct gagaatagtg tatgcggcga ccgagttgct cttgcccggc 5040
gtcaatacgg gataataccg cgccacatag cagaacttta aaagtgctca tcattggaaa 5100gtcaatacgg gataataccg cgccacatag cagaacttta aaagtgctca tcattggaaa 5100
acgttcttcg gggcgaaaac tctcaaggat cttaccgctg ttgagatcca gttcgatgta 5160acgttcttcg gggcgaaaac tctcaaggat cttaccgctg ttgagatcca gttcgatgta 5160
acccactcgt gcacccaact gatcttcagc atcttttact ttcaccagcg tttctgggtg 5220accactcgt gcacccaact gatcttcagc atcttttact ttcaccagcg tttctgggtg 5220
agcaaaaaca ggaaggcaaa atgccgcaaa aaagggaata agggcgacac ggaaatgttg 5280agcaaaaaca ggaaggcaaa atgccgcaaa aaagggaata agggcgacac ggaaatgttg 5280
aatactcata ctcttccttt ttcaatatta ttgaagcatt tatcagggtt attgtctcat 5340aatactcata ctcttccttt ttcaatatta ttgaagcatt tatcagggtt attgtctcat 5340
gagcggatac atatttgaat gtatttagaa aaataaacaa ataggggttc cgcgcacatt 5400gagcggatac atatttgaat gtatttagaa aaataaacaa ataggggttc cgcgcacatt 5400
tccccgaaaa gtgccacctg acgcgccctg tagcggcgca ttaagcgcgg cgggtgtggt 5460tccccgaaaa gtgccacctg acgcgccctg tagcggcgca ttaagcgcgg cgggtgtggt 5460
ggttacgcgc agcgtgaccg ctacacttgc cagcgcccta gcgcccgctc ctttcgcttt 5520ggttacgcgc agcgtgaccg ctacacttgc cagcgcccta gcgcccgctc ctttcgcttt 5520
cttcccttcc tttctcgcca cgttcgccgg ctttccccgt caagctctaa atcgggggct 5580cttcccttcc tttctcgcca cgttcgccgg ctttccccgt caagctctaa atcgggggct 5580
ccctttaggg ttccgattta gtgctttacg gcacctcgac cccaaaaaac ttgattaggg 5640ccctttagg ttccgatta gtgctttacg gcacctcgac cccaaaaaac ttgattagggg 5640
tgatggttca cgtagtgggc catcgccctg atagacggtt tttcgccctt tgacgttgga 5700tgatggttca cgtagtgggc catcgccctg atagacggtt tttcgccctt tgacgttgga 5700
gtccacgttc tttaatagtg gactcttgtt ccaaactgga acaacactca accctatctc 5760gtccacgttc tttaatagtg gactcttgtt ccaaactgga acaacactca accctatctc 5760
ggtctattct tttgatttat aagggatttt gccgatttcg gcctattggt taaaaaatga 5820ggtctattct tttgattatt aagggatttt gccgatttcg gcctattggt taaaaaatga 5820
gctgatttaa caaaaattta acgcgaattt taacaaaata ttaacgctta caatttccat 5880gctgatttaa caaaaattta acgcgaattt taacaaaata ttaacgctta caatttccat 5880
tcgccattca ggctgcgcaa ctgttgggaa gggcgatcgg tgcgggcctc ttcgctatta 5940tcgccattca ggctgcgcaa ctgttgggaa gggcgatcgg tgcgggcctc ttcgctatta 5940
cgccagctgg cgaaaggggg atgtgctg 5968cgccagctgg cgaaaggggg atgtgctg 5968
<210> 2<210> 2
<211> 6673<211> 6673
<212> DNA<212>DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence (Artificial Sequence)
<400> 2<400> 2
caaggcgatt aagttgggta acgccagggt tttcccagtc acgacgttgt aaaacgacgg 60caaggcgatt aagttgggta acgccagggt tttcccagtc acgacgttgt aaaacgacgg 60
ccagtgagcg cgcgtaatac gactcactat agggcgaatt ggagctcgga tccgctagca 120ccagtgagcg cgcgtaatac gactcactat agggcgaatt ggagctcgga tccgctagca 120
tatatgacgt cataacttcg tatagcatac attatacgaa gttatgttga cattgattat 180tatatgacgt cataacttcg tatagcatac attatacgaa gttatgttga cattgattat 180
tgactagtta ttaatagtaa tcaattacgg ggtcattagt tcatagccca tatatggagt 240tgactagtta ttaatagtaa tcaattacgg ggtcattagt tcatagccca tatatggagt 240
tccgcgttac ataacttacg gtaaatggcc cgcctggctg accgcccaac gacccccgcc 300tccgcgttac ataacttacg gtaaatggcc cgcctggctg accgcccaac gacccccgcc 300
cattgacgtc aataatgacg tatgttccca tagtaacgcc aatagggact ttccattgac 360cattgacgtc aataatgacg tatgttccca tagtaacgcc aatagggact ttccattgac 360
gtcaatgggt ggagtattta cggtaaactg cccacttggc agtacatcaa gtgtatcata 420gtcaatgggt ggagtattta cggtaaactg cccacttggc agtacatcaa gtgtatcata 420
tgccaagtac gccccctatt gacgtcaatg acggtaaatg gcccgcctgg cattatgccc 480tgccaagtac gccccctatt gacgtcaatg acggtaaatg gcccgcctgg cattatgccc 480
agtacatgac cttatgggac tttcctactt ggcagtacat ctacgtatta gtcatcgcta 540agtacatgac cttatgggac tttcctactt ggcagtacat ctacgtatta gtcatcgcta 540
ttaccatggt gatgcggttt tggcagtaca tcaatgggcg tggatagcgg tttgactcac 600ttaccatggt gatgcggttt tggcagtaca tcaatgggcg tggatagcgg tttgactcac 600
ggggatttcc aagtctccac cccattgacg tcaatgggag tttgttttgg caccaaaatc 660ggggatttcc aagtctccac cccattgacg tcaatgggag tttgttttgg caccaaaatc 660
aacgggactt tccaaaatgt cgtaacaact ccgccccatt gacgcaaatg ggcggtaggc 720aacgggactt tccaaaatgt cgtaacaact ccgccccatt gacgcaaatg ggcggtaggc 720
gtgtacggtg ggaggtctat ataagcagag ctcgtttagt gaaccgtcag atcgcctgga 780gtgtacggtg ggaggtctat ataagcagag ctcgtttagt gaaccgtcag atcgcctgga 780
gacgccatcc acgctgtttt gacctccata gaagacaccg ggaccgatcc agcctccgcg 840gacgccatcc acgctgtttt gacctccata gaagacaccg ggaccgatcc agcctccgcg 840
gccccgaatt caccatgtct agactggaca agagcaaagt cataaacggc gctctggaat 900gccccgaatt caccatgtct agactggaca agagcaaagt cataaacggc gctctggaat 900
tactcaatgg agtcggtatc gaaggcctga cgacaaggaa actcgctcaa aagctgggag 960tactcaatgg agtcggtatc gaaggcctga cgacaaggaa actcgctcaa aagctgggag 960
ttgagcagcc taccctgtac tggcacgtga agaacaagcg ggccctgctc gatgccctgc 1020ttgagcagcc taccctgtac tggcacgtga agaacaagcg ggccctgctc gatgccctgc 1020
caatcgagat gctggacagg catcataccc acttctgccc cctggaaggc gagtcatggc 1080caatcgagat gctggacagg catcataccc acttctgccc cctggaaggc gagtcatggc 1080
aagactttct gcggaacaac gccaagtcat tccgctgtgc tctcctctca catcgcgacg 1140aagactttct gcggaacaac gccaagtcat tccgctgtgc tctcctctca catcgcgacg 1140
gggctaaagt gcatctcggc acccgcccaa cagagaaaca gtacgaaacc ctggaaaatc 1200gggctaaagt gcatctcggc acccgcccaa cagagaaaca gtacgaaacc ctggaaaatc 1200
agctcgcgtt cctgtgtcag caaggcttct ccctggagaa cgcactgtac gctctgtccg 1260agctcgcgtt cctgtgtcag caaggcttct ccctggagaa cgcactgtac gctctgtccg 1260
ccgtgggcca ctttacactg ggctgcgtat tggaggaaca ggagcatcaa gtagcaaaag 1320ccgtgggcca ctttacactg ggctgcgtat tggaggaaca ggagcatcaa gtagcaaaag 1320
aggaaagaga gacacctacc accgattcta tgcccccact tctgagacaa gcaattgagc 1380aggaaagaga gacacctacc accgattcta tgcccccact tctgagacaa gcaattgagc 1380
tgttcgaccg gcagggagcc gaacctgcct tccttttcgg cctggaacta atcatatgtg 1440tgttcgaccg gcagggagcc gaacctgcct tccttttcgg cctggaacta atcatatgtg 1440
gcctggagaa acagctaaag tgcgaaagcg gcgggccggc cgacgccctt gacgattttg 1500gcctggagaa acagctaaag tgcgaaagcg gcgggccggc cgacgccctt gacgattttg 1500
acttagacat gctcccagcc gatgcccttg acgactttga ccttgatatg ctgcctgctg 1560acttagacat gctcccagcc gatgcccttg acgactttga ccttgatatg ctgcctgctg 1560
acgctcttga cgattttgac cttgacatgc tccccgggta actaagtaag gatccagaca 1620acgctcttga cgattttgac cttgacatgc tccccgggta actaagtaag gatccagaca 1620
tgataagata cattgatgag tttggacaaa ccacaactag aatgcagtga aaaaaatgct 1680tgataagata cattgatgag tttggacaaa ccacaactag aatgcagtga aaaaaatgct 1680
ttatttgtga aatttgtgat gctattgctt tatttgtaac cattataagc tgcaataaac 1740ttatttgtga aatttgtgat gctattgctt tatttgtaac catttataagc tgcaataaac 1740
aagttgctaa gaaaccatta ttatcatgac attaacctat aaaaataggc gtatcacgag 1800aagttgctaa gaaaccatta ttatcatgac attaacctat aaaaataggc gtatcacgag 1800
gccctttcgt cttcactcga gtttaccact ccctatcagt gatagagaaa agtgaaagtc 1860gccctttcgt cttcactcga gtttaccact ccctatcagt gatagagaaa agtgaaagtc 1860
gagtttacca ctccctatca gtgatagaga aaagtgaaag tcgagtttac cactccctat 1920gagtttacca ctccctatca gtgatagaga aaagtgaaag tcgagtttac cactccctat 1920
cagtgataga gaaaagtgaa agtcgagttt accactccct atcagtgata gagaaaagtg 1980cagtgataga gaaaagtgaa agtcgagttt accactccct atcagtgata gagaaaagtg 1980
aaagtcgagt ttaccactcc ctatcagtga tagagaaaag tgaaagtcga gtttaccact 2040aaagtcgagt ttaccactcc ctatcagtga tagagaaaag tgaaagtcga gtttaccact 2040
ccctatcagt gatagagaaa agtgaaagtc gagtttacca ctccctatca gtgatagaga 2100ccctatcagt gtagagaaa agtgaaagtc gagtttacca ctccctatca gtgatagaga 2100
aaagtgaaag tcgagctcgg tacccgggtc gagtaggcgt gtacggtggg aggcctatat 2160aaagtgaaag tcgagctcgg tacccgggtc gagtaggcgt gtacggtggg aggcctatat 2160
aagcagagct cgtttagtga accgtcagat cgcctggaga cgccatccac gctgttttga 2220aagcagagct cgtttagtga accgtcagat cgcctggaga cgccatccac gctgttttga 2220
cctccataga agacaccggg accgatccag cctcctagga ccggtgccac catgggaaaa 2280cctccataga agacaccggg accgatccag cctcctagga ccggtgccac catgggaaaa 2280
tcaaaagaaa tcagccaaga cctcagaaaa aaaattgtag acctccacaa gtctggttca 2340tcaaaagaaa tcagccaaga cctcagaaaa aaaattgtag acctccacaa gtctggttca 2340
tccttgggag caatttccaa acgcctgaaa gtaccacgtt catctgtaca aacaatagta 2400tccttgggag caatttccaa acgcctgaaa gtaccacgtt catctgtaca aacaatagta 2400
cgcaagtata aacaccatgg gaccacgcag ccgtcatacc gctcaggaag gagacgcgtt 2460cgcaagtata aacaccatgg gaccacgcag ccgtcatacc gctcaggaag gagacgcgtt 2460
ctgtctccta gagatgaacg tactttggtg cgaaaagtgc aaatcaatcc cagaacaaca 2520ctgtctccta gagatgaacg tactttggtg cgaaaagtgc aaatcaatcc cagaacaaca 2520
gcaaaggacc ttgtgaagat gctggaggaa acaggtacaa aagtatctat atccacagta 2580gcaaaggacc ttgtgaagat gctggaggaa acaggtacaa aagtatctat atccacagta 2580
aaacgagtcc tatatcgaca taacctgaaa ggccgctcag caaggaagaa gccactgctc 2640aaacgagtcc tatatcgaca taacctgaaa ggccgctcag caaggaagaa gccactgctc 2640
caaaaccgac ataagaaagc cagactacgg tttgcaagag cacatgggga caaagatcgt 2700caaaaccgac ataagaaagc cagactacgg tttgcaagag cacatgggga caaagatcgt 2700
actttttgga gaaatgtcct ctggtctgat gaaacaaaaa tagaactgtt tggccataat 2760actttttgga gaaatgtcct ctggtctgat gaaacaaaaa tagaactgtt tggccataat 2760
gaccatcgtt atgtttggag gaagaagggg gaggcttgca agccgaagaa caccatccca 2820gaccatcgtt atgtttggag gaagaagggg gaggcttgca agccgaagaa caccatccca 2820
accgtgaagc acgggggtgg cagcatcatg ttgtgggggt gctttgctgc aggagggact 2880accgtgaagc acgggggtgg cagcatcatg ttgtgggggt gctttgctgc aggagggact 2880
ggtgcacttc acaaaataga tggcatcatg aggaaggaaa attatgtgga tatattgaag 2940ggtgcacttc acaaaataga tggcatcatg aggaaggaaa attatgtgga tatattgaag 2940
caacatctca agacatcagt caggaagtta aagcttggtc gcaaatgggt cttccaacaa 3000caacatctca agacatcagt caggaagtta aagcttggtc gcaaatgggt cttccaacaa 3000
gacaatgacc ccaagcatac ttccaaacac gtgagaaaat ggcttaagga caacaaagtc 3060gacaatgacc ccaagcatac ttccaaacac gtgagaaaat ggcttaagga caacaaagtc 3060
aaggtattgg agtggccatc acaaagccct gacctcaatc ctatagaaaa tttgtgggca 3120aaggtattgg agtggccatc acaaagccct gacctcaatc ctatagaaaa tttgtgggca 3120
gaactgaaaa agcgtgtgcg agcaaggagg cctacaaacc tgactcagtt acaccagctc 3180gaactgaaaa agcgtgtgcg agcaaggagg cctacaaacc tgactcagtt acaccagctc 3180
tgtcaggagg aatgggccaa aattcaccca acttattgtg ggaagcttgt ggaaggctac 3240tgtcaggagg aatgggccaa aattcaccca acttattgtg ggaagcttgt ggaaggctac 3240
ccgaaacgtt tgacccaagt taaacaattt aaaggcaatg ctaccaaata ctaggcggcc 3300ccgaaacgtt tgacccaagt taaacaattt aaaggcaatg ctaccaaata ctaggcggcc 3300
gcctatcgat aaacggactg ttaccacttc acgccgactc aactgcgcag agaaaaactt 3360gcctatcgat aaacggactg ttaccacttc acgccgactc aactgcgcag agaaaaactt 3360
caaacgacaa cattggcatg gcttttgtta tttttggcgc ttgactcagg atctaaaaac 3420caaacgacaa cattggcatg gcttttgtta tttttggcgc ttgactcagg atctaaaaac 3420
tggaacggcg aaggtgacgg caatgttttg gcaaataagc atccccgaag ttctacaatg 3480tggaacggcg aaggtgacgg caatgttttg gcaaataagc atccccgaag ttctacaatg 3480
catctgagga ctcaatgttt tttttttttt ttttttcttt agtcattcca aatgtttgtt 3540catctgagga ctcaatgtttttttttttttttttttcttt agtcattcca aatgtttgtt 3540
aaatgcattg ttccgaaact tatttgcctc tatgaaggct gcccagtaat tgggagcata 3600aaatgcattg ttccgaaact tattgcctc tatgaaggct gcccagtaat tgggagcata 3600
cttaacattg tagtattgta tgtaaattat gtaacaaaac aatgactggg tttttgtact 3660cttaacattg tagtattgta tgtaaattat gtaacaaaac aatgactggg tttttgtact 3660
ttcagcctta atcttgggtt tttttttttt ttttttggtt ccaaaaaact aagagctctt 3720ttcagcctta atcttgggttttttttttttttttttggtt ccaaaaaact aagagctctt 3720
taccattcaa gatgtaaagg tttccattcc ccctgggcat attgaaaaag ctgtgtggaa 3780taccattcaa gatgtaaagg tttccattcc ccctgggcat attgaaaaag ctgtgtggaa 3780
cgtggcggtg ccagacattt ggtggggcca acctgtacac tgactaattc aaataaaagg 3840cgtggcggtg ccagacattt ggtggggcca acctgtacac tgactaattc aaataaaagg 3840
gacagatcat aacttcgtat agcatacatt atacgaagtt atccgcgggg atatagatct 3900gacagatcat aacttcgtat agcatacatt atacgaagtt atccgcgggg atatagatct 3900
ctcgaggggg ggcccggtac ccagcttttg ttccctttag tgagggttaa tttcgagctt 3960ctcgagggggg ggcccggtac ccagcttttg ttccctttag tgagggttaa tttcgagctt 3960
ggcgtaatca tggtcatagc tgtttcctgt gtgaaattgt tatccgctca caattccaca 4020ggcgtaatca tggtcatagc tgtttcctgt gtgaaattgt tatccgctca caattccaca 4020
caacatacga gccggaagca taaagtgtaa agcctggggt gcctaatgag tgagctaact 4080caacatacga gccggaagca taaagtgtaa agcctggggt gcctaatgag tgagctaact 4080
cacattaatt gcgttgcgct cactgcccgc tttccagtcg ggaaacctgt cgtgccagct 4140cacattaatt gcgttgcgct cactgcccgc tttccagtcg ggaaacctgt cgtgccagct 4140
gcattaatga atcggccaac gcgcggggag aggcggtttg cgtattgggc gctcttccgc 4200gcattaatga atcggccaac gcgcggggag aggcggtttg cgtattgggc gctcttccgc 4200
ttcctcgctc actgactcgc tgcgctcggt cgttcggctg cggcgagcgg tatcagctca 4260ttcctcgctc actgactcgc tgcgctcggt cgttcggctg cggcgagcgg tatcagctca 4260
ctcaaaggcg gtaatacggt tatccacaga atcaggggat aacgcaggaa agaacatgtg 4320ctcaaaggcg gtaatacggt tatccacaga atcaggggat aacgcaggaa agaacatgtg 4320
agcaaaaggc cagcaaaagg ccaggaaccg taaaaaggcc gcgttgctgg cgtttttcca 4380agcaaaaggc cagcaaaagg ccaggaaccg taaaaaggcc gcgttgctgg cgtttttcca 4380
taggctccgc ccccctgacg agcatcacaa aaatcgacgc tcaagtcaga ggtggcgaaa 4440taggctccgc ccccctgacg agcatcacaa aaatcgacgc tcaagtcaga ggtggcgaaa 4440
cccgacagga ctataaagat accaggcgtt tccccctgga agctccctcg tgcgctctcc 4500cccgacagga ctataaagat accaggcgtt tccccctgga agctccctcg tgcgctctcc 4500
tgttccgacc ctgccgctta ccggatacct gtccgccttt ctcccttcgg gaagcgtggc 4560tgttccgacc ctgccgctta ccggatacct gtccgccttt ctcccttcgg gaagcgtggc 4560
gctttctcat agctcacgct gtaggtatct cagttcggtg taggtcgttc gctccaagct 4620gctttctcat agctcacgct gtaggtatct cagttcggtg taggtcgttc gctccaagct 4620
gggctgtgtg cacgaacccc ccgttcagcc cgaccgctgc gccttatccg gtaactatcg 4680gggctgtgtg cacgaaccccc ccgttcagcc cgaccgctgc gccttatccg gtaactatcg 4680
tcttgagtcc aacccggtaa gacacgactt atcgccactg gcagcagcca ctggtaacag 4740tcttgagtcc aacccggtaa gacacgactt atcgccactg gcagcagcca ctggtaacag 4740
gattagcaga gcgaggtatg taggcggtgc tacagagttc ttgaagtggt ggcctaacta 4800gattagcaga gcgaggtatg taggcggtgc tacagagttc ttgaagtggt ggcctaacta 4800
cggctacact agaaggacag tatttggtat ctgcgctctg ctgaagccag ttaccttcgg 4860cggctacact agaaggacag tatttggtat ctgcgctctg ctgaagccag ttaccttcgg 4860
aaaaagagtt ggtagctctt gatccggcaa acaaaccacc gctggtagcg gtggtttttt 4920aaaaagagtt ggtagctctt gatccggcaa acaaaccacc gctggtagcg gtggtttttt 4920
tgtttgcaag cagcagatta cgcgcagaaa aaaaggatct caagaagatc ctttgatctt 4980tgtttgcaag cagcagatta cgcgcagaaa aaaaggatct caagaagatc ctttgatctt 4980
ttctacgggg tctgacgctc agtggaacga aaactcacgt taagggattt tggtcatgag 5040ttctacgggg tctgacgctc agtggaacga aaactcacgt taagggattt tggtcatgag 5040
attatcaaaa aggatcttca cctagatcct tttaaattaa aaatgaagtt ttaaatcaat 5100attatcaaaa aggatcttca cctagatcct tttaaattaa aaatgaagtt ttaaatcaat 5100
ctaaagtata tatgagtaaa cttggtctga cagttaccaa tgcttaatca gtgaggcacc 5160ctaaagtata tatgagtaaa cttggtctga cagttaccaa tgcttaatca gtgaggcacc 5160
tatctcagcg atctgtctat ttcgttcatc catagttgcc tgactccccg tcgtgtagat 5220tatctcagcg atctgtctat ttcgttcatc catagttgcc tgactccccg tcgtgtagat 5220
aactacgata cgggagggct taccatctgg ccccagtgct gcaatgatac cgcgagaccc 5280aactacgata cggggagggct taccatctgg ccccagtgct gcaatgatac cgcgagaccc 5280
acgctcaccg gctccagatt tatcagcaat aaaccagcca gccggaaggg ccgagcgcag 5340acgctcaccg gctccagatt tatcagcaat aaaccagcca gccggaaggg ccgagcgcag 5340
aagtggtcct gcaactttat ccgcctccat ccagtctatt aattgttgcc gggaagctag 5400aagtggtcct gcaactttat ccgcctccat ccagtctatt aattgttgcc gggaagctag 5400
agtaagtagt tcgccagtta atagtttgcg caacgttgtt gccattgcta caggcatcgt 5460agtaagtagt tcgccagtta atagtttgcg caacgttgtt gccattgcta caggcatcgt 5460
ggtgtcacgc tcgtcgtttg gtatggcttc attcagctcc ggttcccaac gatcaaggcg 5520ggtgtcacgc tcgtcgtttg gtatggcttc attcagctcc ggttcccaac gatcaaggcg 5520
agttacatga tcccccatgt tgtgcaaaaa agcggttagc tccttcggtc ctccgatcgt 5580agttacatga tcccccatgt tgtgcaaaaa agcggttagc tccttcggtc ctccgatcgt 5580
tgtcagaagt aagttggccg cagtgttatc actcatggtt atggcagcac tgcataattc 5640tgtcagaagt aagttggccg cagtgttatc actcatggtt atggcagcac tgcataattc 5640
tcttactgtc atgccatccg taagatgctt ttctgtgact ggtgagtact caaccaagtc 5700tcttactgtc atgccatccg taagatgctt ttctgtgact ggtgagtact caaccaagtc 5700
attctgagaa tagtgtatgc ggcgaccgag ttgctcttgc ccggcgtcaa tacgggataa 5760attctgagaa tagtgtatgc ggcgaccgag ttgctcttgc ccggcgtcaa tacgggataa 5760
taccgcgcca catagcagaa ctttaaaagt gctcatcatt ggaaaacgtt cttcggggcg 5820taccgcgcca catagcagaa ctttaaaagt gctcatcatt ggaaaacgtt cttcggggcg 5820
aaaactctca aggatcttac cgctgttgag atccagttcg atgtaaccca ctcgtgcacc 5880aaaactctca aggatcttac cgctgttgag atccagttcg atgtaaccca ctcgtgcacc 5880
caactgatct tcagcatctt ttactttcac cagcgtttct gggtgagcaa aaacaggaag 5940caactgatct tcagcatctt ttactttcac cagcgtttct gggtgagcaa aaacaggaag 5940
gcaaaatgcc gcaaaaaagg gaataagggc gacacggaaa tgttgaatac tcatactctt 6000gcaaaatgcc gcaaaaaagg gaataagggc gacacggaaa tgttgaatac tcatactctt 6000
cctttttcaa tattattgaa gcatttatca gggttattgt ctcatgagcg gatacatatt 6060cctttttcaa tattattgaa gcatttatca gggttatgt ctcatgagcg gatacatatt 6060
tgaatgtatt tagaaaaata aacaaatagg ggttccgcgc acatttcccc gaaaagtgcc 6120tgaatgtatt tagaaaaata aacaaatagg ggttccgcgc aatttcccc gaaaagtgcc 6120
acctgacgcg ccctgtagcg gcgcattaag cgcggcgggt gtggtggtta cgcgcagcgt 6180acctgacgcg ccctgtagcg gcgcattaag cgcggcgggt gtggtggtta cgcgcagcgt 6180
gaccgctaca cttgccagcg ccctagcgcc cgctcctttc gctttcttcc cttcctttct 6240gaccgctaca cttgccagcg ccctagcgcc cgctcctttc gctttcttcc cttcctttct 6240
cgccacgttc gccggctttc cccgtcaagc tctaaatcgg gggctccctt tagggttccg 6300cgccacgttc gccggctttc cccgtcaagc tctaaatcgg gggctccctt tagggttccg 6300
atttagtgct ttacggcacc tcgaccccaa aaaacttgat tagggtgatg gttcacgtag 6360atttagtgct ttacggcacc tcgaccccaa aaaacttgat tagggtgatg gttcacgtag 6360
tgggccatcg ccctgataga cggtttttcg ccctttgacg ttggagtcca cgttctttaa 6420tgggccatcg ccctgataga cggtttttcg ccctttgacg ttggagtcca cgttctttaa 6420
tagtggactc ttgttccaaa ctggaacaac actcaaccct atctcggtct attcttttga 6480tagtggactc ttgttccaaa ctggaacaac actcaaccct atctcggtct attcttttga 6480
tttataaggg attttgccga tttcggccta ttggttaaaa aatgagctga tttaacaaaa 6540tttataaggg attttgccga tttcggccta ttggttaaaa aatgagctga tttaacaaaa 6540
atttaacgcg aattttaaca aaatattaac gcttacaatt tccattcgcc attcaggctg 6600atttaacgcg aattttaaca aaatattaac gcttacaatt tccatcgcc attcaggctg 6600
cgcaactgtt gggaagggcg atcggtgcgg gcctcttcgc tattacgcca gctggcgaaa 6660cgcaactgtt gggaagggcg atcggtgcgg gcctcttcgc tattacgcca gctggcgaaa 6660
gggggatgtg ctg 6673gggggatgtg ctg 6673
<210> 3<210> 3
<211> 20<211> 20
<212> DNA<212>DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence (Artificial Sequence)
<400> 3<400> 3
gaccaccaag cgaaacatcg 20gaccaccaag cgaaacatcg 20
<210> 4<210> 4
<211> 20<211> 20
<212> DNA<212>DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence (Artificial Sequence)
<400> 4<400> 4
atatcacggg tagccaacgc 20atatcacggg tagccaacgc 20
<210> 5<210> 5
<211> 61<211> 61
<212> DNA<212>DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence (Artificial Sequence)
<400> 5<400> 5
cgaagagtaa ccgttgctag gagagaccgt ggctgaatga gactggtgtc gacactagtg 60cgaagagtaa ccgttgctag gagagaccgt ggctgaatga gactggtgtc gacactagtg 60
g 61g 61
<210> 6<210> 6
<211> 48<211> 48
<212> DNA<212>DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence (Artificial Sequence)
<400> 6<400> 6
gatcccacta gtgtcgacac cagtctctaa tttttttttt caaaaaaa 48gatcccacta gtgtcgacac cagtctctaa tttttttttt caaaaaaa 48
<210> 7<210> 7
<211> 28<211> 28
<212> DNA<212>DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence (Artificial Sequence)
<400> 7<400> 7
cgaagagtaa ccgttgctag gagagacc 28cgaagagtaa ccgttgctag gagagacc 28
<210> 8<210> 8
<211> 25<211> 25
<212> DNA<212>DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence (Artificial Sequence)
<400> 8<400> 8
gtggctgaat gagactggtg tcgac 25gtggctgaat gagactggtg tcgac 25
<210> 9<210> 9
<211> 37<211> 37
<212> DNA<212>DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence (Artificial Sequence)
<400> 9<400> 9
ttaaaggcac agtcaactta gtgtatgtaa acttctg 37ttaaaggcac agtcaactta gtgtatgtaa acttctg 37
<210> 10<210> 10
<211> 32<211> 32
<212> DNA<212>DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence (Artificial Sequence)
<400> 10<400> 10
tgaaaaacga gttttaatga ctccaactta ag 32tgaaaaacga gttttaatga ctccaactta ag 32
<210> 11<210> 11
<211> 36<211> 36
<212> DNA<212>DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence (Artificial Sequence)
<400> 11<400> 11
ctaactgacc taagacaggg aatttttact aggatt 36ctaactgacc taagacaggg aatttttact aggatt 36
<210> 12<210> 12
<211> 31<211> 31
<212> DNA<212>DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence (Artificial Sequence)
<400> 12<400> 12
taaggtgtat gtaaacttcc gacttcaact g 31taaggtgtat gtaaacttcc gacttcaact g 31
<210> 13<210> 13
<211> 19<211> 19
<212> DNA<212>DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence (Artificial Sequence)
<400> 13<400> 13
acaccccctc tgatccgcg 19acaccccctc tgatccgcg 19
<210> 14<210> 14
<211> 24<211> 24
<212> DNA<212>DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence (Artificial Sequence)
<400> 14<400> 14
cggccgctcg tacgtcacta attc 24cggccgctcg tacgtcacta attc 24
<210> 15<210> 15
<211> 23<211> 23
<212> DNA<212>DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence (Artificial Sequence)
<400> 15<400> 15
tccatgctgt actgtttccc ccc 23tccatgctgt actgtttccc ccc 23
<210> 16<210> 16
<211> 18<211> 18
<212> DNA<212>DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence (Artificial Sequence)
<400> 16<400> 16
cggaccgact cggatgtc 18cggaccgact cggatgtc 18
<210> 17<210> 17
<211> 22<211> 22
<212> DNA<212>DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence (Artificial Sequence)
<400> 17<400> 17
ccgactcagc tggtggtagt aa 22ccgactcagc tggtggtagt aa 22
<210> 18<210> 18
<211> 20<211> 20
<212> DNA<212>DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence (Artificial Sequence)
<400> 18<400> 18
ttccctctgt tcccgtcact 20ttccctctgt tcccgtcact 20
<210> 19<210> 19
<211> 20<211> 20
<212> DNA<212>DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence (Artificial Sequence)
<400> 19<400> 19
tggtgcctca gtttgaatgc 20tggtgcctca gtttgaatgc 20
<210> 20<210> 20
<211> 20<211> 20
<212> DNA<212>DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence (Artificial Sequence)
<400> 20<400> 20
ccgtatcagt gcacgttcga 20ccgtatcagt gcacgttcga 20
<210> 21<210> 21
<211> 18<211> 18
<212> DNA<212>DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence (Artificial Sequence)
<400> 21<400> 21
tgggtgcgca agttgaaa 18tgggtgcgca agttgaaa 18
<210> 22<210> 22
<211> 21<211> 21
<212> DNA<212>DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence (Artificial Sequence)
<400> 22<400> 22
cctcatcaat gcctgcagtt t 21cctcatcaat gcctgcagtt t 21
<210> 23<210> 23
<211> 24<211> 24
<212> DNA<212>DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence (Artificial Sequence)
<400> 23<400> 23
ctcagtagca gacccttgta agca 24ctcagtagca gacccttgta agca 24
<210> 24<210> 24
<211> 20<211> 20
<212> DNA<212>DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence (Artificial Sequence)
<400> 24<400> 24
acatcatccc tgcatccact 20acatcatccc tgcatccact 20
<210> 25<210> 25
<211> 20<211> 20
<212> DNA<212>DNA
<213> 人工序列(Artificial Sequence)<213> Artificial Sequence (Artificial Sequence)
<400> 25<400> 25
agatccacga cggacacatt 20agatccacga cggacacatt 20
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CN110734929A (en) * | 2019-11-14 | 2020-01-31 | 南通大学 | A transposon-mediated efficient non-viral eukaryotic cell stable transfection method |
CN111850037A (en) * | 2019-04-30 | 2020-10-30 | 潘雨堃 | High-throughput genetic screening method for piggyBac transposon |
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CN110734929A (en) * | 2019-11-14 | 2020-01-31 | 南通大学 | A transposon-mediated efficient non-viral eukaryotic cell stable transfection method |
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