CN108218988A - Nano antibody PD-1/Nb52 of anti-PD-1 and preparation method and application - Google Patents
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- C07K16/2803—Immunoglobulins [IGs], e.g. monoclonal or polyclonal antibodies against material from animals or humans against receptors, cell surface antigens or cell surface determinants against the immunoglobulin superfamily
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Abstract
本发明公开了抗PD‑1的纳米抗体PD‑1/Nb52及其制备方法与应用。本发明所提供的纳米抗体,包含纳米抗体PD‑1/Nb52的抗原决定簇互补区和骨架区;所述纳米抗体PD‑1/Nb52的抗原决定簇互补区由CDR1、CDR2和CDR3组成;通过本发明所公布的纳米抗体PD‑1/Nb52的核苷酸序列及宿主细胞,该纳米抗体PD‑1/Nb52能够在大肠杆菌内高效表达,应用于PD‑1分子检测试剂的研发,制备抑制PD‑1活性以及制备肿瘤抑制剂或肿瘤细胞抑制剂和促进T细胞增殖的药物。
The invention discloses anti-PD-1 nanobody PD-1/Nb52 and its preparation method and application. The nanobody provided by the present invention comprises an epitope complementary region and a framework region of the Nanobody PD‑1/Nb52; the epitope complementary region of the Nanobody PD‑1/Nb52 consists of CDR1, CDR2 and CDR3; by The nucleotide sequence and host cell of the Nanobody PD-1/Nb52 disclosed in the present invention, the Nanobody PD-1/Nb52 can be efficiently expressed in Escherichia coli, and is applied to the research and development of PD-1 molecular detection reagents, preparation of inhibitory PD‑1 activity and the preparation of tumor suppressors or tumor cell suppressors and drugs that promote T cell proliferation.
Description
技术领域technical field
本发明涉及生物医学领域中抗PD-1的纳米抗体PD-1/Nb52及其制备方法与应用。The invention relates to anti-PD-1 nanobody PD-1/Nb52 in the field of biomedicine and its preparation method and application.
背景技术Background technique
程序性死亡受体1(programmed death 1,PD-1)是活化T细胞表面表达的一种跨膜糖蛋白分子,属CD28超家族成员,对T细胞增殖起负性调节作用,在免疫应答中起重要调节作用。PD-1主要在激活的T细胞和B细胞中表达,是激活型T细胞的一种表面受体,PD-1有两个配体,分别是细胞程式死亡-配体1(PD-L1,又名B7-H1)和细胞程式死亡-配体1(PD-L2,又名B7-DC)。机体内的肿瘤微环境会诱导浸润的T细胞高表达PD-1分子,肿瘤细胞会高表达PD-1的配体PD-L1和PD-L2,导致肿瘤微环境中PD-1通路持续激活PD-L1与PD-1联接后,T细胞功能被抑制,不能向免疫系统发出攻击肿瘤的信号。PD-1抑制剂可以阻断PD-1与PD-L1的结合,阻断负向调控信号,使T细胞恢复活性,从而增强免疫应答。高特异性、低反应性的抗PD-1单抗已在多项临床试验中获得肯定,例如默沙东公司生产的名称为Keytruda(Pembrolizumab)的药物,以及施贵宝公司生产的名称为Opdivo(Nivolumab)nivolumab的药物。Programmed death receptor 1 (programmed death 1, PD-1) is a transmembrane glycoprotein molecule expressed on the surface of activated T cells, which is a member of the CD28 superfamily and negatively regulates the proliferation of T cells. play an important regulatory role. PD-1 is mainly expressed in activated T cells and B cells, and is a surface receptor of activated T cells. PD-1 has two ligands, programmed cell death-ligand 1 (PD-L1, Also known as B7-H1) and programmed cell death-ligand 1 (PD-L2, also known as B7-DC). The tumor microenvironment in the body will induce infiltrating T cells to highly express PD-1 molecules, and tumor cells will highly express PD-1 ligands PD-L1 and PD-L2, resulting in the continuous activation of PD-1 pathway in the tumor microenvironment. After -L1 is combined with PD-1, the function of T cells is inhibited, and it cannot send a signal to the immune system to attack the tumor. PD-1 inhibitors can block the combination of PD-1 and PD-L1, block negative regulatory signals, and restore the activity of T cells, thereby enhancing the immune response. Anti-PD-1 monoclonal antibodies with high specificity and low reactivity have been affirmed in many clinical trials, such as the drug named Keytruda (Pembrolizumab) produced by Merck & Co., and the drug named Opdivo (Nivolumab) nivolumab produced by Bristol-Myers Squibb. medicine.
但是,抗体药物应用存在很多问题,比如研发周期长,生产成本过高;难以大规模生产;稳定性差易降解,贮存成本高;容易被污染,维护成本费用高昂;并具有免疫原性等,限制了其在临床上的应用范围。However, there are many problems in the application of antibody drugs, such as long research and development cycle, high production cost, difficulty in large-scale production, poor stability and easy degradation, high storage cost, easy contamination, high maintenance cost, and immunogenicity, etc. its scope of clinical application.
纳米抗体技术,是生物医学科学家在传统抗体的基础上,运用分子生物学技术结合纳米粒子科学的概念进行的抗体工程革命,从而研发出的最新和最小的抗体分子。1993年Hamers等报道,骆驼体内存在着天然缺失轻链和重链恒定区1(CH1)的重链抗体,克隆其可变区得到只由一个重链可变区组成的单域抗体,称为VHH(variable domain of heavychain of heavy-chain antibody),现已被重新命名为“纳米抗体”(nanobody,Nb)。纳米抗体具有完整功能的最小的抗原结合片段,其晶体结构呈椭圆形,直径2.5nm,长4nm。Nb具有许多独特的性质,很适合进行基因改造,在疾病的精确诊断和靶向治疗等方面展现了广阔的应用前景。纳米抗体在化学组成和形状上比抗体简单许多,不具有化学疏水性,其抗热性和抗酸碱性更强,更容易相互结合或与其他化合物结合,能被单基因编码,容易用微生物合成。纳米抗体对环境具有良好的耐受性,具备高度的构象稳定性,而且分子质量更小,临床的治疗效果更好,同时这些小蛋白分子更容易合成,价格也更低。纳米抗体的独特的性质,使其在疾病的精确诊断和免疫靶向治疗等方面展现了更为广阔的应用前景。Nanobody technology is the latest and smallest antibody molecule developed by biomedical scientists on the basis of traditional antibodies, using molecular biology technology combined with the concept of nanoparticle science to carry out an antibody engineering revolution. In 1993, Hamers et al. reported that there are heavy chain antibodies naturally missing the light chain and heavy chain constant region 1 (CH1) in camels, and their variable regions were cloned to obtain single domain antibodies consisting of only one heavy chain variable region, called VHH (variable domain of heavychain of heavy-chain antibody), has been renamed as "nanobody" (nanobody, Nb). Nanobodies are the smallest antigen-binding fragments with complete functions, and their crystal structures are elliptical, 2.5nm in diameter and 4nm long. Nb has many unique properties and is very suitable for genetic modification, showing broad application prospects in the precise diagnosis and targeted therapy of diseases. Nanobodies are much simpler than antibodies in chemical composition and shape, do not have chemical hydrophobicity, have stronger heat resistance and acid and alkali resistance, are easier to combine with each other or with other compounds, can be encoded by a single gene, and are easily synthesized by microorganisms . Nanobodies have good tolerance to the environment, have high conformational stability, and have smaller molecular weights, which have better clinical therapeutic effects. At the same time, these small protein molecules are easier to synthesize and lower in price. The unique properties of nanobodies make them more promising in the precise diagnosis of diseases and targeted immune therapy.
发明内容Contents of the invention
本发明所要解决的技术问题是,如何制备有效治疗肿瘤的药物。The technical problem to be solved by the present invention is how to prepare drugs for effectively treating tumors.
为解决上述技术问题,本发明首先提供了纳米抗体。In order to solve the above technical problems, the present invention firstly provides nanobodies.
本发明的第一方面,提供了一种纳米抗体,称为PD-1/Nb52,该纳米抗体包含抗原决定簇互补区CDR和骨架区FR;所述纳米抗体的抗原决定簇互补区CDR由CDR1、CDR2和CDR3组成;所述CDR1的氨基酸序列为序列表中SEQ ID No.8的第23-32位氨基酸;所述CDR2的氨基酸序列为序列表中SEQ ID No.8的第49-56位氨基酸;所述CDR3的氨基酸序列为序列表中SEQ ID No.8的第94-112位氨基酸。The first aspect of the present invention provides a nanobody called PD-1/Nb52, which comprises an epitope complementary region CDR and a framework region FR; the epitope complementary region CDR of the nanobody consists of CDR1 , CDR2 and CDR3; the amino acid sequence of the CDR1 is the 23-32 amino acid of SEQ ID No.8 in the sequence listing; the amino acid sequence of the CDR2 is the 49-56 of SEQ ID No.8 in the sequence listing Amino acid; the amino acid sequence of the CDR3 is amino acid 94-112 of SEQ ID No. 8 in the sequence listing.
优选地,该纳米抗体的骨架区FR由FR1、FR2、FR3和FR4组成;其中所述FR1的氨基酸序列为序列表中SEQ ID No.8的第1-22位氨基酸;所述FR2的氨基酸序列为序列表中SEQ IDNo.8的第33-48位氨基酸;所述FR3的氨基酸序列为序列表中SEQ ID No.8的第57-93位氨基酸;所述FR4的氨基酸序列为序列表中SEQ ID No.8的第113-123位氨基酸。Preferably, the framework region FR of the nanobody is composed of FR1, FR2, FR3 and FR4; wherein the amino acid sequence of FR1 is amino acid 1-22 of SEQ ID No.8 in the sequence listing; the amino acid sequence of FR2 is It is the 33-48 amino acid of SEQ ID No.8 in the sequence listing; the amino acid sequence of the FR3 is the 57-93 amino acid of SEQ ID No.8 in the sequence listing; the amino acid sequence of the FR4 is SEQ ID No.8 in the sequence listing. Amino acids 113-123 of ID No.8.
优选地,所述纳米抗体PD-1/Nb52的氨基酸序列如序列表中SEQ ID No.8所示。Preferably, the amino acid sequence of the Nanobody PD-1/Nb52 is shown in SEQ ID No.8 in the sequence listing.
本发明也相应提供了一种PD-1纳米抗体PD-1/Nb52的VHH链,包括骨架区FR和抗原决定簇互补区CDR,所述骨架区FR选自下组的FR的氨基酸序列:SEQ ID NO:1所示的FR1,SEQID NO:2所示的FR2,SEQ ID NO:3所示的FR3,SEQ ID NO:4所示的FR4;所述抗原决定簇互补区CDR选自下组的CDR的氨基酸序列:SEQ ID NO:5所示的CDR1,SEQ ID NO:6所示的CDR2,SEQ ID NO:7所示的CDR3。The present invention also provides a VHH chain of a PD-1 nanobody PD-1/Nb52 correspondingly, including a framework region FR and an epitope complementary region CDR, and the framework region FR is selected from the amino acid sequence of the FR of the following group: SEQ FR1 shown in ID NO: 1, FR2 shown in SEQ ID NO: 2, FR3 shown in SEQ ID NO: 3, FR4 shown in SEQ ID NO: 4; the CDR of the complementary region of the antigenic determinant is selected from the following group Amino acid sequences of the CDRs: CDR1 shown in SEQ ID NO:5, CDR2 shown in SEQ ID NO:6, and CDR3 shown in SEQ ID NO:7.
优选地,所述的PD-1纳米抗体PD-1/Nb52的VHH链,它具有SEQ ID NO:8所示的氨基酸序列。Preferably, the VHH chain of the PD-1 Nanobody PD-1/Nb52 has the amino acid sequence shown in SEQ ID NO:8.
为了使所述纳米抗体PD-1/Nb52便于纯化,可在序列表中SEQ ID No.8的第1-123位氨基酸所示的蛋白质的氨基末端或羧基末端连接上如表1所示的标签。In order to facilitate the purification of the Nanobody PD-1/Nb52, the amino-terminal or carboxyl-terminal of the protein shown in amino acids 1-123 of SEQ ID No. 8 in the sequence listing can be linked with a label as shown in Table 1 .
表1、标签的序列Table 1. Sequence of tags
本发明另外一方面,所述纳米抗体PD-1/Nb52可人工合成,也可先合成其编码基因,再进行生物表达得到。所述纳米抗体PD-1/Nb52的编码基因可通过将序列表中SEQ IDNo.9所示的DNA序列中缺失一个或几个氨基酸残基的密码子,和/或进行一个或几个碱基对的错义突变,和/或在其5′端和/或3′端连上表1所示的标签的编码序列得到。In another aspect of the present invention, the Nanobody PD-1/Nb52 can be synthesized artificially, or its coding gene can be firstly synthesized and then biologically expressed. The coding gene of the nanobody PD-1/Nb52 can be obtained by deleting the codon of one or several amino acid residues in the DNA sequence shown in SEQ ID No.9 in the sequence listing, and/or adding one or several bases The right missense mutation, and/or the coding sequence of the tag shown in Table 1 is connected at its 5' end and/or 3' end.
为解决上述技术问题,本发明还提供了与所述纳米抗体PD-1/Nb52相关的生物材料。To solve the above technical problems, the present invention also provides biological materials related to the Nanobody PD-1/Nb52.
本发明所提供的与所述纳米抗体PD-1/Nb52相关的生物材料,为B1)至B12)中的任一种:The biological material related to the Nanobody PD-1/Nb52 provided by the present invention is any one of B1) to B12):
B1)编码所述纳米抗体PD-1/Nb52的核酸分子;B1) a nucleic acid molecule encoding said Nanobody PD-1/Nb52;
B2)含有B1)所述核酸分子的表达盒;B2) an expression cassette containing the nucleic acid molecule of B1);
B3)含有B1)所述核酸分子的重组载体;B3) a recombinant vector containing the nucleic acid molecule of B1);
B4)含有B2)所述表达盒的重组载体;B4) a recombinant vector containing the expression cassette described in B2);
B5)含有B1)所述核酸分子的重组微生物;B5) a recombinant microorganism containing the nucleic acid molecule of B1);
B6)含有B2)所述表达盒的重组微生物;B6) a recombinant microorganism containing the expression cassette described in B2);
B7)含有B3)所述重组载体的重组微生物;B7) a recombinant microorganism containing the recombinant vector described in B3);
B8)含有B4)所述重组载体的重组微生物;B8) a recombinant microorganism containing the recombinant vector described in B4);
B9)含有B1)所述核酸分子的转基因动物细胞系;B9) a transgenic animal cell line containing the nucleic acid molecule of B1);
B10)含有B2)所述表达盒的转基因动物细胞系;B10) a transgenic animal cell line containing the expression cassette described in B2);
B11)含有B3)所述重组载体的转基因动物细胞系;B11) a transgenic animal cell line containing the recombinant vector described in B3);
B12)含有B4)所述重组载体的转基因动物细胞系。B12) A transgenic animal cell line containing the recombinant vector described in B4).
上述生物材料中,所述核酸分子可以是DNA,如cDNA、基因组DNA或重组DNA;所述核酸分子也可以是RNA,如mRNA或hnRNA等。In the above biological material, the nucleic acid molecule can be DNA, such as cDNA, genomic DNA or recombinant DNA; the nucleic acid molecule can also be RNA, such as mRNA or hnRNA.
上述生物材料中,B2)所述的含有编码所述纳米抗体PD-1/Nb52的核酸分子的表达盒,又称为PD-1/Nb52基因表达盒,是指能够在宿主细胞中表达纳米抗体PD-1/Nb52的DNA,该DNA不但可包括启动纳米抗体PD-1/Nb52基因转录的启动子,还可包括终止纳米抗体PD-1/Nb52基因转录的终止子。进一步,所述表达盒还可包括增强子序列。Among the above biological materials, the expression cassette containing the nucleic acid molecule encoding the Nanobody PD-1/Nb52 described in B2), also known as the PD-1/Nb52 gene expression cassette, refers to the ability to express the Nanobody in a host cell The DNA of PD-1/Nb52, the DNA may not only include a promoter that initiates the transcription of the nanobody PD-1/Nb52 gene, but also includes a terminator that terminates the transcription of the nanobody PD-1/Nb52 gene. Further, the expression cassette may also include an enhancer sequence.
可用现有的表达载体构建含有所述纳米抗体PD-1/Nb52基因表达盒的重组载体。An existing expression vector can be used to construct a recombinant vector containing the nanobody PD-1/Nb52 gene expression cassette.
上述生物材料中,所述载体可为质粒、黏粒、噬菌体或病毒载体。In the above biological materials, the vector can be a plasmid, a cosmid, a phage or a viral vector.
上述生物材料中,所述重组载体可为将B1)所述核酸分子导入到pComb3中得到的重组载体。在本发明的一个实施例中,B3)所述重组载体为将所述纳米抗体PD-1/Nb52的编码基因(核苷酸序列为序列表中SEQ ID No.9的第1-369位核苷酸)导入pComb3中得到的重组载体pComb3-PD-1/Nb52,重组载体pComb3-PD-1/Nb52表达SEQ ID No.8所示的纳米抗体PD-1/Nb52。In the above biological material, the recombinant vector can be a recombinant vector obtained by introducing the nucleic acid molecule of B1) into pComb3. In one embodiment of the present invention, B3) the recombinant vector is the encoding gene of the Nanobody PD-1/Nb52 (the nucleotide sequence is the 1st-369th core of SEQ ID No.9 in the sequence listing nucleotide) into the recombinant vector pComb3-PD-1/Nb52 obtained in pComb3, and the recombinant vector pComb3-PD-1/Nb52 expresses the Nanobody PD-1/Nb52 shown in SEQ ID No.8.
上述生物材料中,所述微生物可为酵母、细菌、藻或真菌。In the above biological materials, the microorganisms can be yeast, bacteria, algae or fungi.
上述生物材料中,所述转基因动物细胞系不包括繁殖材料;所述重组微生物可为将B1)所述核酸分子导入到大肠杆菌WK6中得到的重组微生物。In the above biological materials, the transgenic animal cell line does not include propagation materials; the recombinant microorganism can be a recombinant microorganism obtained by introducing the nucleic acid molecule of B1) into Escherichia coli WK6.
本领域普通技术人员可以很容易地采用已知的方法,例如定向进化和点突变的方法,对本发明的B1)所述纳米抗体PD-1/Nb52的核苷酸序列进行突变。那些经过人工修饰的,具有与本发明的B1)所述纳米抗体PD-1/Nb52的核苷酸序列75%或75%以上同一性的核苷酸,只要编码所述纳米抗体PD-1/Nb52且具有纳米抗体PD-1/Nb52活性,均是衍生于本发明的核苷酸序列并且等同于本发明的序列。Those skilled in the art can easily use known methods, such as directed evolution and point mutation methods, to mutate the nucleotide sequence of the Nanobody PD-1/Nb52 described in B1) of the present invention. Those artificially modified nucleotides having 75% or more identity to the nucleotide sequence of the Nanobody PD-1/Nb52 in B1) of the present invention, as long as they encode the Nanobody PD-1/Nb52 Nb52 and having nanobody PD-1/Nb52 activity are all derived from the nucleotide sequence of the present invention and are equivalent to the sequence of the present invention.
这里使用的术语“同一性”指与天然核酸序列的序列相似性。“同一性”包括与本发明的编码SEQ ID No.8所示的蛋白质的核苷酸序列具有75%或更高,或85%或更高,或90%或更高,或95%或更高同一性的核苷酸序列。同一性可以用肉眼或计算机软件进行评价。使用计算机软件,两个或多个序列之间的同一性可以用百分比(%)表示,其可以用来评价相关序列之间的同一性。The term "identity" as used herein refers to sequence similarity to a native nucleic acid sequence. "Identity" includes 75% or higher, or 85% or higher, or 90% or higher, or 95% or higher with the nucleotide sequence encoding the protein shown in SEQ ID No.8 of the present invention highly identical nucleotide sequences. Identity can be assessed visually or with computer software. Using computer software, identity between two or more sequences can be expressed as a percentage (%), which can be used to evaluate the identity between related sequences.
上述75%或75%以上同一性,可为75%、80%、85%、90%或95%以上的同一性。The identity of 75% or more may be 75%, 80%, 85%, 90% or more.
上述生物材料中,B1)所述核酸分子为下述1)或2)或3):Among the above biological materials, the nucleic acid molecules described in B1) are the following 1) or 2) or 3):
1)核苷酸序列是序列表中SEQ ID No.9的cDNA分子或DNA分子;1) The nucleotide sequence is the cDNA molecule or DNA molecule of SEQ ID No.9 in the sequence listing;
2)与1)限定的核苷酸序列具有75%或75%以上同一性,且编码所述纳米抗体PD-1/Nb52的cDNA分子或基因组DNA分子;2) A cDNA molecule or genomic DNA molecule that has 75% or more identity to the nucleotide sequence defined in 1) and encodes the Nanobody PD-1/Nb52;
3)在严格条件下与1)限定的核苷酸序列杂交,且编码所述纳米抗体PD-1/Nb52的cDNA分子或基因组DNA分子。3) Hybridizing with the nucleotide sequence defined in 1) under stringent conditions, and encoding the cDNA molecule or genomic DNA molecule of the Nanobody PD-1/Nb52.
为解决上述技术问题,本发明还提供了所述纳米抗体PD-1/Nb52的衍生抗体。To solve the above technical problems, the present invention also provides derivative antibodies of the nanobody PD-1/Nb52.
本发明所提供的所述纳米抗体PD-1/Nb52的衍生抗体,为下述a)或b)或c)或d)或e):The derivative antibody of the Nanobody PD-1/Nb52 provided by the present invention is the following a) or b) or c) or d) or e):
a)含有所述纳米抗体PD-1/Nb52的单链抗体;a) a single chain antibody containing said Nanobody PD-1/Nb52;
b)含有a)所述单链抗体的融合抗体;b) a fusion antibody containing the single-chain antibody described in a);
c)含有所述纳米抗体PD-1/Nb52的融合抗体;c) a fusion antibody comprising said Nanobody PD-1/Nb52;
d)含有所述纳米抗体PD-1/Nb52的Fab;d) a Fab containing said Nanobody PD-1/Nb52;
e)含有所述纳米抗体PD-1/Nb52的完整抗体。e) Whole antibodies comprising said Nanobody PD-1/Nb52.
为解决上述技术问题,本发明还提供了所述纳米抗体PD-1/Nb52的制备方法。In order to solve the above technical problems, the present invention also provides a preparation method of the Nanobody PD-1/Nb52.
本发明所提供的所述纳米抗体PD-1/Nb52的制备方法,包括将编码所述纳米抗体PD-1/Nb52的核酸分子导入受体细胞得到表达所述纳米抗体PD-1/Nb52的转基因细胞,培养所述转基因细胞,得到所述纳米抗体PD-1/Nb52。The preparation method of the Nanobody PD-1/Nb52 provided by the present invention comprises introducing the nucleic acid molecule encoding the Nanobody PD-1/Nb52 into a recipient cell to obtain a transgene expressing the Nanobody PD-1/Nb52 cells, culturing the transgenic cells to obtain the nanobody PD-1/Nb52.
上述纳米抗体PD-1/Nb52的制备方法中,所述编码所述纳米抗体PD-1/Nb52的核酸分子的核苷酸序列如序列表中SEQ ID No.9所示。In the above preparation method of Nanobody PD-1/Nb52, the nucleotide sequence of the nucleic acid molecule encoding the Nanobody PD-1/Nb52 is shown in SEQ ID No.9 in the sequence listing.
上述纳米抗体PD-1/Nb52的制备方法中,所述受体细胞可为微生物细胞,如大肠杆菌,具体可为大肠杆菌WK6。In the above method for preparing nanobody PD-1/Nb52, the recipient cell may be a microbial cell, such as Escherichia coli, specifically Escherichia coli WK6.
为解决上述技术问题,本发明还提供了下述A1-A8中的任一种用途:In order to solve the problems of the technologies described above, the present invention also provides any application in the following A1-A8:
A1、所述纳米抗体PD-1/Nb52在制备肿瘤抑制剂或肿瘤细胞抑制剂中的应用;A1, the application of the Nanobody PD-1/Nb52 in the preparation of tumor suppressors or tumor cell suppressors;
A2、所述生物材料在制备肿瘤抑制剂或肿瘤细胞抑制剂中的应用;A2, the application of the biological material in the preparation of tumor suppressor or tumor cell suppressor;
A3、所述纳米抗体PD-1/Nb52的衍生抗体在制备肿瘤抑制剂或肿瘤细胞抑制剂中的应用;A3, the application of the derivative antibody of the nanobody PD-1/Nb52 in the preparation of tumor suppressor or tumor cell suppressor;
A4、所述纳米抗体PD-1/Nb52的制备方法在制备肿瘤抑制剂或肿瘤细胞抑制剂中的应用;A4. Application of the preparation method of the nanobody PD-1/Nb52 in the preparation of tumor suppressors or tumor cell suppressors;
A5、所述纳米抗体PD-1/Nb52在制备抑制PD-1活性或促进T细胞增殖产品中的应用;A5. Application of the Nanobody PD-1/Nb52 in the preparation of products that inhibit PD-1 activity or promote T cell proliferation;
A6、所述生物材料在制备抑制PD-1活性或促进T细胞增殖产品中的应用;A6. The application of the biological material in the preparation of products that inhibit PD-1 activity or promote T cell proliferation;
A7、所述衍生抗体在制备抑制PD-1活性或促进T细胞增殖产品中的应用;A7. The application of the derivative antibody in the preparation of products that inhibit PD-1 activity or promote T cell proliferation;
A8、所述纳米抗体PD-1/Nb52的制备方法在制备抑制PD-1活性或促进T细胞增殖产品中的应用。A8. Application of the preparation method of the Nanobody PD-1/Nb52 in the preparation of products that inhibit PD-1 activity or promote T cell proliferation.
上述产品可为药物。The above-mentioned product may be a medicament.
扩增编码序列表中SEQ ID No.8所示的氨基酸序列或其任一片段氨基酸序列的核酸分子的引物对,也属于本发明的保护范围。The pair of primers for amplifying the nucleic acid molecule encoding the amino acid sequence shown in SEQ ID No. 8 in the sequence list or any fragment amino acid sequence also falls within the protection scope of the present invention.
本发明提供了一种抗PD-1的纳米抗体PD-1/Nb52、编码该纳米抗体PD-1/Nb52的核苷酸序列及宿主细胞,以及其制备方法和应用。该纳米抗体PD-1/Nb52能够在大肠杆菌内高效表达,应用于PD-1分子检测试剂的研发,制备肿瘤抑制剂或肿瘤细胞抑制剂以及制备抑制PD-1活性和促进T细胞增殖的药物。The invention provides an anti-PD-1 nanobody PD-1/Nb52, a nucleotide sequence encoding the nanobody PD-1/Nb52 and a host cell, as well as a preparation method and application thereof. The nanobody PD-1/Nb52 can be highly expressed in Escherichia coli, and is applied to the development of PD-1 molecular detection reagents, the preparation of tumor inhibitors or tumor cell inhibitors, and the preparation of drugs that inhibit PD-1 activity and promote T cell proliferation .
附图说明Description of drawings
图1是纳米抗体的DNA电泳图,从左到右凝胶孔的DNA条带分别是:第一道为2000bp的分子标记,第二道为PCR产物,PCR产物带约为400bp;Figure 1 is the DNA electrophoresis image of nanobodies. The DNA bands in the gel wells from left to right are: the first lane is the molecular marker of 2000bp, the second lane is the PCR product, and the PCR product band is about 400bp;
图2是PD-1纳米抗体PD-1/Nb52经镍柱树脂凝胶亲和层析纯化后的SDS-PAGE的电泳图;泳道M表示蛋白分子量Marker,单位为KDa;Figure 2 is the electrophoresis of the SDS-PAGE of the PD-1 nanobody PD-1/Nb52 purified by nickel column resin gel affinity chromatography; lane M represents the protein molecular weight Marker, in KDa;
图3A为纳米抗体PD-1/Nb52与未转染PD-1的293T细胞的结合实验结果;图3B为纳米抗体PD-1/Nb52与转染PD-1的293T细胞的结合实验结果。Figure 3A is the result of the binding experiment of Nanobody PD-1/Nb52 and 293T cells not transfected with PD-1; Figure 3B is the result of the binding experiment of Nanobody PD-1/Nb52 and 293T cells transfected with PD-1.
具体实施方式Detailed ways
下面结合具体实施方式对本发明进行进一步的详细描述,给出的实施例仅为了阐明本发明,而不是为了限制本发明的范围。The present invention will be further described in detail below in conjunction with specific embodiments, and the given examples are only for clarifying the present invention, not for limiting the scope of the present invention.
下述实施例中的实验方法,如无特殊说明,均为常规方法。The experimental methods in the following examples are conventional methods unless otherwise specified.
下述实施例中所用的材料、试剂等,如无特殊说明,均可从商业途径得到。The materials and reagents used in the following examples can be obtained from commercial sources unless otherwise specified.
下述实施例中的大肠杆菌WK6经东南大学生命科学研究院万亚坤实验室同意后,公众可从广西医科大学获得该生物材料,该生物材料只为重复本发明的相关实验所用,不可作为其它用途使用。The Escherichia coli WK6 in the following examples is approved by the Wan Yakun Laboratory of the Institute of Life Sciences of Southeast University, and the public can obtain the biological material from Guangxi Medical University. This biological material is only used for repeating the relevant experiments of the present invention and cannot be used as Use for other purposes.
实施例1、纳米抗体的制备Embodiment 1, the preparation of nanobody
本发明提供了来源于骆驼的1种纳米抗体,其名称为PD-1/Nb52,该纳米抗体PD-1/Nb52的氨基酸序列如序列表中SEQ ID No.8所示,由SEQ ID No.9的核苷酸序列编码。The present invention provides a nanobody derived from camel, its name is PD-1/Nb52, the amino acid sequence of the nanobody PD-1/Nb52 is shown in SEQ ID No.8 in the sequence listing, represented by SEQ ID No. 9 nucleotide sequence encoding.
纳米抗体PD-1/Nb52的核苷酸电泳图如图1所示,其中第一道为2000bp的分子标记,其余孔道为PCR产物,PCR产物带约为400bp。The nucleotide electrophoresis pattern of the nanobody PD-1/Nb52 is shown in Figure 1, in which the first lane is a 2000bp molecular marker, and the rest of the wells are PCR products, and the PCR product band is about 400bp.
将载体pComb3(Biovector产品)的PstI和NotI识别序列间的DNA片段替换为SEQID No.9所示的DNA分子,其他序列均不变,得到重组载体pComb3-PD-1/Nb52,pComb3-PD-1/Nb52与pComb3的差别仅在于将pComb3的PstI和NotI识别序列间的DNA片段替换为SEQ IDNo.9所示的DNA分子。重组载体pComb3-PD-1/Nb52表达SEQ ID No.8所示的纳米抗体PD-1/Nb52。将pComb3-PD-1/Nb52导入大肠杆菌WK6中,得到重组菌WK6-pComb3-PD-1/Nb52。Replace the DNA fragment between the PstI and NotI recognition sequences of the vector pComb3 (Biovector product) with the DNA molecule shown in SEQID No.9, and keep the other sequences unchanged to obtain the recombinant vector pComb3-PD-1/Nb52, pComb3-PD- The only difference between 1/Nb52 and pComb3 is that the DNA segment between the PstI and NotI recognition sequences of pComb3 is replaced by the DNA molecule shown in SEQ ID No.9. The recombinant vector pComb3-PD-1/Nb52 expresses the Nanobody PD-1/Nb52 shown in SEQ ID No.8. The pComb3-PD-1/Nb52 was introduced into Escherichia coli WK6 to obtain the recombinant strain WK6-pComb3-PD-1/Nb52.
纳米抗体的具体制备步骤如下:The specific preparation steps of nanobodies are as follows:
(1)将WK6-pComb3-PD-1/Nb52涂布在含有氨苄青霉素和葡萄糖的LB平板(LB平板中,氨苄青霉素和葡萄糖的浓度分别为100μg/mL和20mg/mL)上,25-37℃培养过夜(10-14小时);(1) Spread WK6-pComb3-PD-1/Nb52 on an LB plate containing ampicillin and glucose (in the LB plate, the concentrations of ampicillin and glucose are 100 μg/mL and 20 mg/mL, respectively), 25-37 Cultivate overnight (10-14 hours);
(2)挑选单个菌落接种在5mL含有氨苄青霉素的LB培养液(LB培养液中,氨苄青霉素的浓度为100μg/mL)中,25-37℃摇床培养过夜(10-14小时);(2) Select a single colony and inoculate it in 5 mL of LB culture solution containing ampicillin (in the LB culture solution, the concentration of ampicillin is 100 μg/mL), and cultivate overnight (10-14 hours) on a shaker at 25-37° C.;
(3)取1mL步骤(2)培养过夜的培养液接种至300-350mL TB培养液中,25-37℃摇床培养至OD值达到0.6-1时,加入IPTG,得到WK6-pComb3-PD-1/Nb52培养液,使WK6-pComb3-PD-1/Nb52培养液中IPTG的浓度为1mM,将WK6-pComb3-PD-1/Nb52培养液在20-30℃下于摇床(摇床的转速为220-250rpm)上培养过夜(10-14小时),得到WK6-pComb3-PD-1/Nb52诱导液;(3) Inoculate 1 mL of the overnight culture solution in step (2) into 300-350 mL of TB culture solution, culture on a shaker at 25-37°C until the OD value reaches 0.6-1, then add IPTG to obtain WK6-pComb3-PD- 1/Nb52 culture solution, so that the concentration of IPTG in the WK6-pComb3-PD-1/Nb52 culture solution is 1 mM, put the WK6-pComb3-PD-1/Nb52 culture solution at 20-30 ° C on a shaker (the Cultivate overnight (10-14 hours) at a rotational speed of 220-250rpm to obtain WK6-pComb3-PD-1/Nb52 induction solution;
(4)将步骤(3)的WK6-pComb3-PD-1/Nb52诱导液于4℃下离心,收集菌体;(4) Centrifuge the WK6-pComb3-PD-1/Nb52 induction solution in step (3) at 4°C to collect the bacteria;
(5)利用文献(Zhu M,Hu Y,Li G,Ou W,Mao P,Xin S,Wan Y:Combining magneticnanoparticle with biotinylated nanobodies for rapid and sensitive detectionof influenza H3N2.Nanoscale Res Lett 2014,9:528.)中的渗透法,获得抗体粗提液;(5) Using literature (Zhu M, Hu Y, Li G, Ou W, Mao P, Xin S, Wan Y: Combining magnetic nanoparticles with biotinylated nanoparticles for rapid and sensitive detection of influenza H3N2.Nanoscale Res Lett 2014,9:528.) The infiltration method in the method was used to obtain the antibody crude extract;
(6)利用文献(Zhu M,Hu Y,Li G,Ou W,Mao P,Xin S,Wan Y:Combining magneticnanoparticle with biotinylated nanobodies for rapid and sensitive detectionof influenza H3N2.Nanoscale Res Lett 2014,9:528.)中的镍柱离子亲和层析法制备纳米抗体PD-1/Nb52。纳米抗体PD-1/Nb52的SDA-PAGE电泳图分别如图2,纳米抗体PD-1/Nb52的大小约为15KDa。结果显示,上述方法得到的纳米抗体PD-1/Nb52的纯度可以达到90%以上。(6) Using literature (Zhu M, Hu Y, Li G, Ou W, Mao P, Xin S, Wan Y: Combining magnetic nanoparticles with biotinylated nanoparticles for rapid and sensitive detection of influenza H3N2.Nanoscale Res Lett 2014,9:528.) Nanobody PD-1/Nb52 was prepared by nickel column ion affinity chromatography. The SDA-PAGE electrophoresis images of nanobody PD-1/Nb52 are shown in Figure 2, respectively, and the size of nanobody PD-1/Nb52 is about 15KDa. The results show that the purity of the nanobody PD-1/Nb52 obtained by the above method can reach more than 90%.
实施例2、纳米抗体与PD-1结合率的测定Example 2, Determination of Nanobody and PD-1 Binding Rate
纳米抗体PD-1/Nb52与PD-1结合率测定(直接法)Determination of the binding rate of Nanobody PD-1/Nb52 to PD-1 (direct method)
用稳转PD-1的293T细胞检测纳米抗体PD-1/Nb52与PD-1结合率,将实施例1的纳米抗体PD-1/Nb52(1μg)加入1-6×106个上述293T细胞中4℃避光孵育20-40min,PBS洗涤2次后,加入5μl PE anti-HA tag antibody(abcam,Clone:20B12)4℃孵育20-40min,PBS洗涤2次后,将样品上BACKMAN流式细胞仪,结果如图3B所示,未转染PD-1的293T细胞作为对照如图3A所示。图3A是空白对照和PD-1纳米抗体PD-1/Nb52分别与未转染PD-1的293T细胞的结合百分率;图3B是空白对照和PD-1纳米抗体PD-1/Nb52分别稳转PD-1的293T细胞的结合百分率;图3A和3B中横轴为荧光强度(PE),纵轴为数量百分比(%of Max),S2代表空白对照,S1代表PD-1纳米抗体PD-1/Nb52。图示结果可以看出PD-1纳米抗体PD-1/Nb52能够很好的与稳转PD-1的293T细胞结合。293T cells stably transfected with PD-1 were used to detect the binding rate of nanobody PD-1/Nb52 to PD-1, and the nanobody PD-1/Nb52 (1 μg) in Example 1 was added to 1-6×10 6 above-mentioned 293T cells Incubate at 4°C in the dark for 20-40min, wash twice with PBS, add 5μl PE anti-HA tag antibody (abcam, Clone: 20B12) and incubate at 4°C for 20-40min, wash twice with PBS, put the sample on BACKMAN flow cytometry Cytometry, the results are shown in Figure 3B, and 293T cells not transfected with PD-1 were used as a control, as shown in Figure 3A. Figure 3A is the binding percentage of blank control and PD-1 nanobody PD-1/Nb52 respectively to 293T cells not transfected with PD-1; Figure 3B is the stable transformation of blank control and PD-1 nanobody PD-1/Nb52 respectively The binding percentage of 293T cells of PD-1; the horizontal axis in Figure 3A and 3B is the fluorescence intensity (PE), the vertical axis is the percentage of the number (% of Max), S2 represents the blank control, and S1 represents the PD-1 nanobody PD-1 /Nb52. From the results shown in the figure, it can be seen that PD-1 nanobody PD-1/Nb52 can well bind to 293T cells stably transfected with PD-1.
最后应说明的是:以上实施例仅用以说明本发明的技术方案,而非对其限制;尽管参照前述实施例对本发明进行了详细的说明,本领域的普通技术人员应当理解:其依然可以对前述各实施例所记载的技术方案进行修改,或者对其中部分技术特征进行等同替换;而这些修改或者替换,并不使相应技术方案的本质脱离本发明各实施例技术方案的精神和范围。Finally, it should be noted that: the above embodiments are only used to illustrate the technical solutions of the present invention, rather than to limit them; although the present invention has been described in detail with reference to the foregoing embodiments, those of ordinary skill in the art should understand that: it can still be Modifications are made to the technical solutions described in the foregoing embodiments, or equivalent replacements are made to some of the technical features; and these modifications or replacements do not make the essence of the corresponding technical solutions deviate from the spirit and scope of the technical solutions of the various embodiments of the present invention.
SEQUENCE LISTINGSEQUENCE LISTING
<110> 广西医科大学<110> Guangxi Medical University
<120> 抗PD-1的纳米抗体PD-1/Nb52及其制备方法与应用<120> Anti-PD-1 nanobody PD-1/Nb52 and its preparation method and application
<130> GY17100594<130> GY17100594
<160> 9<160> 9
<170> PatentIn version 3.3<170> PatentIn version 3.3
<210> 1<210> 1
<211> 22<211> 22
<212> PRT<212> PRT
<213> 人工序列<213> Artificial sequence
<220><220>
<221> CONFLICT<221> CONFLICT
<222> (1)..(22)<222> (1)..(22)
<223> FR1<223>FR1
<400> 1<400> 1
Leu Gln Glu Ser Gly Gly Gly Ser Val Gln Ser Gly Gly Ser Leu ArgLeu Gln Glu Ser Gly Gly Gly Ser Val Gln Ser Gly Gly Ser Leu Arg
1 5 10 151 5 10 15
Leu Thr Cys Ala Ala SerLeu Thr Cys Ala Ala Ser
20 20
<210> 2<210> 2
<211> 16<211> 16
<212> PRT<212> PRT
<213> 人工序列<213> Artificial sequence
<220><220>
<221> CONFLICT<221> CONFLICT
<222> (1)..(16)<222> (1)..(16)
<223> FR2<223> FR2
<400> 2<400> 2
Trp Phe Arg Gln Ala Pro Gly Lys Glu Arg Glu Gly Val Ala Ser IleTrp Phe Arg Gln Ala Pro Gly Lys Glu Arg Glu Gly Val Ala Ser Ile
1 5 10 151 5 10 15
<210> 3<210> 3
<211> 37<211> 37
<212> PRT<212> PRT
<213> 人工序列<213> Artificial sequence
<220><220>
<221> CONFLICT<221> CONFLICT
<222> (1)..(37)<222> (1)..(37)
<223> FR3<223> FR3
<400> 3<400> 3
Ala Asp Ser Val Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Asp LysAla Asp Ser Val Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Asp Lys
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Asn Thr Leu Tyr Leu Gln Met Ser Ser Leu Gln Pro Glu Asp Thr AlaAsn Thr Leu Tyr Leu Gln Met Ser Ser Leu Gln Pro Glu Asp Thr Ala
20 25 30 20 25 30
Met Tyr Tyr Cys AlaMet Tyr Tyr Cys Ala
35 35
<210> 4<210> 4
<211> 11<211> 11
<212> PRT<212> PRT
<213> 人工序列<213> Artificial sequence
<220><220>
<221> CONFLICT<221> CONFLICT
<222> (1)..(11)<222> (1)..(11)
<223> FR4<223>FR4
<400> 4<400> 4
Trp Gly Gln Gly Thr Gln Val Thr Val Ser SerTrp Gly Gln Gly Thr Gln Val Thr Val Ser Ser
1 5 101 5 10
<210> 5<210> 5
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<212> PRT<212> PRT
<213> 人工序列<213> Artificial sequence
<220><220>
<221> CONFLICT<221> CONFLICT
<222> (1)..(10)<222> (1)..(10)
<223> CDR1<223> CDR1
<400> 5<400> 5
Gly Tyr Thr Tyr Ser Asn Tyr Tyr Met GlyGly Tyr Thr Tyr Ser Asn Tyr Tyr Met Gly
1 5 101 5 10
<210> 6<210> 6
<211> 8<211> 8
<212> PRT<212> PRT
<213> 人工序列<213> Artificial sequence
<220><220>
<221> CONFLICT<221> CONFLICT
<222> (1)..(8)<222> (1)..(8)
<223> CDR2<223> CDR2
<400> 6<400> 6
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1 51 5
<210> 7<210> 7
<211> 19<211> 19
<212> PRT<212> PRT
<213> 人工序列<213> Artificial sequence
<220><220>
<221> CONFLICT<221> CONFLICT
<222> (1)..(19)<222> (1)..(19)
<223> CDR3<223> CDR3
<400> 7<400> 7
Ala Pro Arg Ser Pro Tyr Tyr Arg Gly Gln Thr Phe Trp Glu Gly AlaAla Pro Arg Ser Pro Tyr Tyr Arg Gly Gln Thr Phe Trp Glu Gly Ala
1 5 10 151 5 10 15
Tyr Asn TyrTyr Asn Tyr
<210> 8<210> 8
<211> 123<211> 123
<212> PRT<212> PRT
<213> 人工序列<213> Artificial sequence
<400> 8<400> 8
Leu Gln Glu Ser Gly Gly Gly Ser Val Gln Ser Gly Gly Ser Leu ArgLeu Gln Glu Ser Gly Gly Gly Ser Val Gln Ser Gly Gly Ser Leu Arg
1 5 10 151 5 10 15
Leu Thr Cys Ala Ala Ser Gly Tyr Thr Tyr Ser Asn Tyr Tyr Met GlyLeu Thr Cys Ala Ala Ser Gly Tyr Thr Tyr Ser Asn Tyr Tyr Met Gly
20 25 30 20 25 30
Trp Phe Arg Gln Ala Pro Gly Lys Glu Arg Glu Gly Val Ala Ser IleTrp Phe Arg Gln Ala Pro Gly Lys Glu Arg Glu Gly Val Ala Ser Ile
35 40 45 35 40 45
Asp Thr Leu Gly Tyr Thr Arg Tyr Ala Asp Ser Val Lys Gly Arg PheAsp Thr Leu Gly Tyr Thr Arg Tyr Ala Asp Ser Val Lys Gly Arg Phe
50 55 60 50 55 60
Thr Ile Ser Arg Asp Asn Asp Lys Asn Thr Leu Tyr Leu Gln Met SerThr Ile Ser Arg Asp Asn Asp Lys Asn Thr Leu Tyr Leu Gln Met Ser
65 70 75 8065 70 75 80
Ser Leu Gln Pro Glu Asp Thr Ala Met Tyr Tyr Cys Ala Ala Pro ArgSer Leu Gln Pro Glu Asp Thr Ala Met Tyr Tyr Cys Ala Ala Pro Arg
85 90 95 85 90 95
Ser Pro Tyr Tyr Arg Gly Gln Thr Phe Trp Glu Gly Ala Tyr Asn TyrSer Pro Tyr Tyr Arg Gly Gln Thr Phe Trp Glu Gly Ala Tyr Asn Tyr
100 105 110 100 105 110
Trp Gly Gln Gly Thr Gln Val Thr Val Ser SerTrp Gly Gln Gly Thr Gln Val Thr Val Ser Ser
115 120 115 120
<210> 9<210> 9
<211> 369<211> 369
<212> DNA<212>DNA
<213> 人工序列<213> Artificial sequence
<400> 9<400> 9
ctgcaggagt ctggaggagg ctcggtgcag tccggagggt ctctgagact cacctgtgca 60ctgcaggagt ctggaggagg ctcggtgcag tccggagggt ctctgagact cacctgtgca 60
gcctctggat acacctacag taactactac atgggctggt tccgccaggc tccaggaaag 120gcctctggat aacacctacag taactactac atgggctggt tccgccaggc tccaggaaag 120
gagcgcgagg gggtcgcaag tattgatact cttggttata caagatacgc agactccgtg 180gagcgcgagg gggtcgcaag tattgatact cttggttata caagatacgc agactccgtg 180
aaggggcgat tcaccatctc ccgtgacaac gataagaaca cgctgtatct gcaaatgagc 240aaggggcgat tcaccatctc ccgtgacaac gataagaaca cgctgtatct gcaaatgagc 240
agcctgcaac cggaggacac ggccatgtat tactgtgcgg cccctcgttc tccttactac 300agcctgcaac cggaggacac ggccatgtat tactgtgcgg cccctcgttc tccttatactac 300
cggggtcaga cgttctggga gggggcgtat aactactggg gccaggggac ccaggtcacc 360cggggtcaga cgttctggga gggggcgtat aactactggg gccaggggac ccaggtcacc 360
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