CN108084262A - For the full people source single domain antibody or antigen-binding fragment of zika virus and application - Google Patents
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Abstract
本发明属于生物技术领域,涉及针对寨卡病毒的全人源单域抗体、其抗原结合片段,以及它们在预防和治疗寨卡病毒相关疾病的应用。本发明的针对寨卡病毒的全人源单域抗体及其抗原结合片段,其主要特征在于此单域抗体是由存在于抗体重链基因可变区中的互补决定区(complementarity‑determining region,CDR)特异性基因序列决定的,并在原核和真核细胞中获得有效表达的特异性结合寨卡病毒包膜糖蛋白E(protein E)的DIII的抗体,利用此抗体CDR区或部分或全基因,可在原核和真核细胞及任何表达系统中改造和生产不同形式的基因工程抗体,可用于制备临床上预防或治疗寨卡病毒相关疾病的制剂。The invention belongs to the field of biotechnology, and relates to fully human single-domain antibodies against Zika virus, antigen-binding fragments thereof, and their application in preventing and treating Zika virus-related diseases. The fully human single-domain antibody against Zika virus of the present invention and its antigen-binding fragment are mainly characterized in that the single-domain antibody consists of a complementarity-determining region (complementarity-determining region, which exists in the variable region of the antibody heavy chain gene) CDR) specific gene sequence determined, and obtained effective expression in prokaryotic and eukaryotic cells specifically binding Zika virus envelope glycoprotein E (protein E) DIII antibody, using this antibody CDR region or part or all Genes can be used to modify and produce different forms of genetically engineered antibodies in prokaryotic and eukaryotic cells and any expression system, which can be used to prepare clinical preparations for the prevention or treatment of Zika virus-related diseases.
Description
技术领域technical field
本发明属于生物技术领域,具体涉及针对寨卡病毒的全人源单域抗体、其抗原结合片段,以及它们在预防和治疗寨卡病毒相关疾病的应用。The invention belongs to the field of biotechnology, and specifically relates to a fully human single-domain antibody against Zika virus, an antigen-binding fragment thereof, and their application in preventing and treating Zika virus-related diseases.
背景技术Background technique
现有技术公开了寨卡病毒是一种虫媒病毒,最早于1947年在乌干达寨卡丛林的恒河猴中发现,与登革热、黄病毒和西尼罗河病毒一样均隶属于黄病毒属(黄病毒科)。长期以来,寨卡病毒在非洲和亚洲国家的热带地区普遍存在,但在人群中并不能引起大范围的感染,直至2007年,寨卡病毒在西太平洋密克罗尼亚群岛的雅铺岛暴发流行,发病185例,紧接着在2013-2014年间,大洋洲的法属波利尼西亚地区出现了更大规模的暴发,感染了约32000人。据报道,2015年,寨卡病毒到达巴西,引起了近30,000例感染,随后迅速蔓延至南美其他各国和中北美加勒比海地区,并进一步扩散到全球66个国家和地区。自从2016年2月我国发现了第一例输入性病例,至今已有12人感染了寨卡病毒。目前,越来越多的研究证实寨卡病毒是一种嗜神经病毒,能够感染人神经干细胞,导致被感染的细胞死亡或生长缓慢。这一系列证据表明寨卡病毒能通过感染和减缓神经细胞的发育以及致死神经细胞而使胎儿的大脑发育迟缓,造成新生儿小头症。除此之外,寨卡病毒还可攻击人类免疫系统,引发一种罕见的自身免疫疾病格林-巴利综合征(Guillain-Barre syndrome,GBS),以及能导致另一种自身免疫性疾病—急性播散性脑脊髓炎。目前尚未研发出有效的针对寨卡病毒的疫苗,也没有特效的治疗性药物。研究显示,寨卡病毒和黄病毒属的其他病毒结构一样,其中黄病毒的囊膜蛋白(E蛋白)主要负责病毒与感染宿主的受体的识别,介导病毒的入侵,因此是该类病毒最主要的保护性抗原。有研究通过对寨卡病毒E蛋白三维晶体结构的解析发现寨卡病毒E蛋白的表面存在独有的一片正电荷区带,这一特性可能使得寨卡病毒对宿主吸附有所不同。作为一类新型特异性抗病毒感染的生物工程制剂,抗体在抗感染治疗及紧急被动免疫预防方面一直扮演着重要的角色,因此,研制特异性针对寨卡病毒的抗体,用于紧急预防和治疗是十分必要和可行的。The prior art discloses that Zika virus is an arbovirus, which was first found in rhesus monkeys in the Zika jungle in Uganda in 1947, and belongs to the genus Flavivirus (flavivirus) like dengue fever, flavivirus and West Nile virus. division). For a long time, Zika virus has been ubiquitous in tropical areas of African and Asian countries, but it cannot cause widespread infection in the population. Until 2007, Zika virus broke out in Yapu Island, Micronesia Islands in the Western Pacific An epidemic with 185 cases was followed by a larger outbreak in the French Polynesia region of Oceania in 2013-2014, which infected about 32,000 people. According to reports, in 2015, the Zika virus arrived in Brazil, causing nearly 30,000 infections, and then quickly spread to other countries in South America and the Caribbean region of Central and North America, and further spread to 66 countries and regions around the world. Since the first imported case was discovered in my country in February 2016, 12 people have been infected with Zika virus so far. At present, more and more studies have confirmed that Zika virus is a neurotropic virus that can infect human neural stem cells, causing the infected cells to die or grow slowly. This series of evidence shows that Zika virus can delay the development of fetal brain development by infecting and slowing down the development of nerve cells and killing nerve cells, causing neonatal microcephaly. In addition, Zika virus can also attack the human immune system, causing a rare autoimmune disease Guillain-Barre syndrome (Guillain-Barre syndrome, GBS), and another autoimmune disease - acute Disseminated encephalomyelitis. An effective vaccine against Zika virus has not yet been developed, and there is no specific therapeutic drug. Studies have shown that Zika virus has the same structure as other viruses of the flavivirus genus. The envelope protein (E protein) of the flavivirus is mainly responsible for the recognition of the virus and the receptor of the infected host, and mediates the invasion of the virus, so it is a virus of this type. The most important protective antigen. A study found that there is a unique positive charge zone on the surface of the Zika virus E protein through the analysis of the three-dimensional crystal structure of the Zika virus E protein, which may make the Zika virus adsorb differently to the host. As a new type of specific anti-viral infection bioengineering agent, antibodies have always played an important role in anti-infection treatment and emergency passive immunization prevention. Therefore, it is necessary to develop antibodies specific to Zika virus for emergency prevention and treatment It is very necessary and feasible.
单克隆抗体的体外抗病毒中和活性和体内保护机体抵抗病毒攻击已获得许多实验证明,如抗甲肝病毒、汉坦病毒、RSV病毒、SARS病毒、亨尼帕病毒、埃博拉病毒等单克隆抗体可以在体内100%保护动物免受病毒攻击,但全长的单克隆抗体分子量过大(150kDa),从而导致其在临床应用时存在一些显著的缺陷,首先,分子量过大造成组织(如血脑屏障)渗透性较差,影响治疗效果,其次,无法达到一些具有空间位阻的靶点(steric hindrance),此外,大分子量导致生产成本高、价格昂贵,使得单克隆抗体药物在抗病毒治疗等领域的应用还相对有限,而单域抗体(VH),其仅包含了抗体中的一个重链可变区,分子量只有12-15kDa,约为单克隆抗体的1/10,是目前最小的保留了抗原结合性能的抗体片段,因此,其生产成本低、组织渗透能力强的特性使得治疗寨卡病毒这类噬神经病毒成为可能。The in vitro antiviral neutralization activity of monoclonal antibodies and the in vivo protection of the body against viral attacks have been proved by many experiments, such as anti-hepatitis A virus, Hantaan virus, RSV virus, SARS virus, Henipa virus, Ebola virus and other monoclonal antibodies Antibodies can 100% protect animals from virus attack in vivo, but the molecular weight of the full-length monoclonal antibody is too large (150kDa), which leads to some significant defects in its clinical application. First, the excessive molecular weight causes tissue (such as blood Brain barrier) has poor permeability, which affects the therapeutic effect. Secondly, it cannot reach some targets with steric hindrance (steric hindrance). In addition, the large molecular weight leads to high production costs and high prices, making monoclonal antibody drugs in antiviral therapy. The application in fields such as monoclonal antibodies is still relatively limited, and the single domain antibody (VH), which only includes a heavy chain variable region in the antibody, has a molecular weight of only 12-15kDa, which is about 1/10 of the monoclonal antibody, and is currently the smallest Antibody fragments that retain their antigen-binding properties, therefore, have low production costs and high tissue penetration properties that make it possible to treat neurophagic viruses such as Zika virus.
由此可见,研发高效、特异性的抗寨卡病毒的单域抗体意义重大,这些单域抗体不仅可用于寨卡病毒及寨卡病毒感染的体外快速检测诊断,也可以用于人感染寨卡病毒的预防和治疗。It can be seen that the development of efficient and specific anti-Zika virus single-domain antibodies is of great significance. These single-domain antibodies can not only be used for rapid detection and diagnosis of Zika virus and Zika virus infection in vitro, but also for human infection with Zika Virus prevention and treatment.
与本发明相关的现有技术有,The prior art relevant to the present invention has,
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发明内容Contents of the invention
本发明的目的在于基于现有技术的现状,提供针对寨卡病毒的全人源单域抗体针对寨卡病毒的全人源单域抗体或抗原结合片段及应用。尤其涉及特异性结合寨卡病毒包膜糖蛋白E的全人源单域抗体。The purpose of the present invention is to provide a fully human single domain antibody against Zika virus or an antigen-binding fragment and its application based on the current state of the art. In particular, it relates to a fully human single-domain antibody that specifically binds to Zika virus envelope glycoprotein E.
本发明的全人源单域抗体包括n301,n302和n303。本发明还公开了这些抗体的抗原结合片段,双特异性抗体,与效应分子的免疫偶联物,及融合蛋白。The fully human single domain antibody of the present invention includes n301, n302 and n303. The invention also discloses antigen-binding fragments of these antibodies, bispecific antibodies, immune conjugates with effector molecules, and fusion proteins.
本发明所公开的抗体和组合物可以用于,比如说,人感染寨卡病毒的预防和治疗。The antibodies and compositions disclosed in the present invention can be used, for example, for the prevention and treatment of Zika virus infection in humans.
在本发明的一些实施方案中,单域抗体重链可变区的氨基酸序列,包含至少一个(比如三个)n301、n302和n303的重链可变区的CDR区。In some embodiments of the present invention, the amino acid sequence of the heavy chain variable region of the single domain antibody comprises at least one (such as three) CDR regions of the heavy chain variable region of n301, n302 and n303.
本发明公开了所述的单域抗体重链可变区的氨基酸序列:The present invention discloses the amino acid sequence of the heavy chain variable region of the single domain antibody:
SEQ ID NO:1是n301重链可变区的氨基酸序列;SEQ ID NO: 1 is the amino acid sequence of the n301 heavy chain variable region;
SEQ ID NO:2是n301重链可变区CDR1的氨基酸序列;SEQ ID NO: 2 is the amino acid sequence of n301 heavy chain variable region CDR1;
SEQ ID NO:3是n301重链可变区CDR2的氨基酸序列;SEQ ID NO: 3 is the amino acid sequence of n301 heavy chain variable region CDR2;
SEQ ID NO:4是n301重链可变区CDR3的氨基酸序列;SEQ ID NO: 4 is the amino acid sequence of n301 heavy chain variable region CDR3;
SEQ ID NO:5是n302重链可变区的氨基酸序列;SEQ ID NO:5 is the amino acid sequence of the n302 heavy chain variable region;
SEQ ID NO:6是n302重链可变区CDR1的氨基酸序列;SEQ ID NO: 6 is the amino acid sequence of n302 heavy chain variable region CDR1;
SEQ ID NO:7是n302重链可变区CDR2的氨基酸序列;SEQ ID NO: 7 is the amino acid sequence of n302 heavy chain variable region CDR2;
SEQ ID NO:8是n302重链可变区CDR3的氨基酸序列。SEQ ID NO: 8 is the amino acid sequence of n302 heavy chain variable region CDR3.
SEQ ID NO:9是n303重链可变区的氨基酸序列;SEQ ID NO: 9 is the amino acid sequence of the n303 heavy chain variable region;
SEQ ID NO:10是n303重链可变区CDR1的氨基酸序列;SEQ ID NO: 10 is the amino acid sequence of n303 heavy chain variable region CDR1;
SEQ ID NO:11是n303重链可变区CDR2的氨基酸序列;SEQ ID NO: 11 is the amino acid sequence of n303 heavy chain variable region CDR2;
SEQ ID NO:12是n303重链可变区CDR3的氨基酸序列。SEQ ID NO: 12 is the amino acid sequence of n303 heavy chain variable region CDR3.
本发明中还公开了编码这些单域抗体和抗原结合片段的核酸,在本发明的一些实施例中,公开了包含这些核酸的载体,及包含这些载体的宿主细胞;在进一步的实施方案中,公开了包含这些单域抗体,抗原结合片段,双特异性抗体,偶联物,融合蛋白,核酸,质粒,和载体的药用组合物;在其它实施方案中,这些单域抗体,抗原结合片段,双特异性抗体,偶联物,融合蛋白,核酸,质粒,和载体被用来检测、预防、或治疗寨卡病毒感染。Nucleic acids encoding these single domain antibodies and antigen-binding fragments are also disclosed in the present invention, and in some embodiments of the present invention, vectors comprising these nucleic acids, and host cells comprising these vectors are disclosed; in further embodiments, Pharmaceutical compositions comprising these single domain antibodies, antigen binding fragments, bispecific antibodies, conjugates, fusion proteins, nucleic acids, plasmids, and vectors are disclosed; in other embodiments, these single domain antibodies, antigen binding fragments , bispecific antibodies, conjugates, fusion proteins, nucleic acids, plasmids, and vectors are used to detect, prevent, or treat Zika virus infection.
本发明中,所述的针对寨卡病毒的全人源单域抗体,或抗原结合片段,包含:In the present invention, the fully human single domain antibody against Zika virus, or an antigen-binding fragment, comprises:
抗体的重链可变区含有SEQ ID NO:1的26-33位,51-58位,和/或97-108位氨基酸残基;或The heavy chain variable region of the antibody comprises amino acid residues 26-33, 51-58, and/or 97-108 of SEQ ID NO: 1; or
抗体的重链可变区含有SEQ ID NO:5的26-33位,51-58位,和/或97-103位氨基酸残基;或The heavy chain variable region of the antibody comprises amino acid residues 26-33, 51-58, and/or 97-103 of SEQ ID NO:5; or
抗体的重链可变区含有SEQ ID NO:9的26-33位,51-58位,和/或97-103位氨基酸残基,The heavy chain variable region of the antibody contains 26-33, 51-58, and/or 97-103 amino acid residues of SEQ ID NO:9,
其中单域抗体或抗原结合片段特异性结合寨卡病毒。Wherein the single domain antibody or antigen-binding fragment specifically binds Zika virus.
本发明中,所述的单域抗体或抗原结合片段,包含:In the present invention, the single domain antibody or antigen-binding fragment comprises:
抗体的重链可变区含有SEQ ID NO:1的26-33位,51-58位,和/或96-108位氨基酸残基;或The heavy chain variable region of the antibody comprises amino acid residues 26-33, 51-58, and/or 96-108 of SEQ ID NO: 1; or
抗体的重链可变区含有SEQ ID NO:5的26-33位,51-58位,和/或97-103位氨基酸残基;或The heavy chain variable region of the antibody comprises amino acid residues 26-33, 51-58, and/or 97-103 of SEQ ID NO:5; or
抗体的重链可变区含有SEQ ID NO:9的26-33位,51-58位,和/或97-103位氨基酸残基。The heavy chain variable region of the antibody comprises amino acid residues 26-33, 51-58, and/or 97-103 of SEQ ID NO:9.
本发明中,所述的单域抗体或抗原结合片段,其中:In the present invention, the single domain antibody or antigen-binding fragment, wherein:
重链可变区的氨基酸序列与SEQ ID NO:1具有至少90%的相同性;或The amino acid sequence of the heavy chain variable region is at least 90% identical to SEQ ID NO: 1; or
重链可变区的氨基酸序列与SEQ ID NO:5具有至少90%的相同性;或The amino acid sequence of the heavy chain variable region is at least 90% identical to SEQ ID NO:5; or
重链可变区的氨基酸序列与SEQ ID NO:9具有至少90%的相同性。The amino acid sequence of the heavy chain variable region is at least 90% identical to SEQ ID NO:9.
本发明中,所述的单域抗体或抗原结合片段,其中的单域抗体或抗原结合片段是全人源的。In the present invention, the single domain antibody or antigen-binding fragment, wherein the single domain antibody or antigen-binding fragment is fully human.
本发明中,所述的所述的单域抗体或抗原结合片段,其中的单域抗体为VH,抗原结合片段为VH。In the present invention, the single domain antibody or antigen-binding fragment, wherein the single domain antibody is VH, and the antigen-binding fragment is VH.
本发明还提供了含有上述的单域抗体或抗原结合片段的双特异性抗体。The present invention also provides a bispecific antibody comprising the above-mentioned single domain antibody or antigen-binding fragment.
本发明中,所述的单域抗体或抗原结合片段和所述的双特异性抗体,与一种效应分子偶联;所述的免疫偶联物,其中的效应分子是可检测标记;所述的可检测标记是荧光标记,放射性标记,亲和素,生物素,或酶;所述的效应分子是毒素或化疗剂,其中的毒素是绿脓杆菌外毒素或其变体。In the present invention, the single domain antibody or antigen-binding fragment and the bispecific antibody are coupled to an effector molecule; the immunoconjugate, wherein the effector molecule is a detectable label; the The detectable label is a fluorescent label, a radioactive label, avidin, biotin, or an enzyme; the effector molecule is a toxin or a chemotherapeutic agent, wherein the toxin is Pseudomonas aeruginosa exotoxin or a variant thereof.
本发明还提供了一种融合蛋白,包含上述的单域抗体和异源蛋白,其中异源蛋白是人的Fc。The present invention also provides a fusion protein comprising the above-mentioned single domain antibody and a heterologous protein, wherein the heterologous protein is human Fc.
本发明还提供了分离的核酸分子,其编码上述的单域抗体或抗原结合片段,和所述的双特异性抗体,和所述的免疫偶联物,或所述的融合蛋白;所述的核酸分子,可操作地连接至启动子。The present invention also provides an isolated nucleic acid molecule, which encodes the above-mentioned single domain antibody or antigen-binding fragment, and the bispecific antibody, and the immunoconjugate, or the fusion protein; A nucleic acid molecule operably linked to a promoter.
本发明还提供了一种含有所述的核酸分子的质粒,其中质粒是一种病毒质粒。The present invention also provides a plasmid containing said nucleic acid molecule, wherein the plasmid is a viral plasmid.
本发明还提供了一种可转化所述的核酸分子或所述的质粒的宿主细胞。The present invention also provides a host cell capable of transforming the nucleic acid molecule or the plasmid.
本发明还提供了一种在生物样品中检测寨卡病毒的方法,包含:The present invention also provides a method for detecting Zika virus in a biological sample, comprising:
含有被检测的生物样品,及所述的单域抗体或抗原结合片段,所述的双特异性抗体,所述的免疫偶联物,或3所述的融合蛋白,在足以形成免疫复合物的条件下,检测免疫复合物的存在与否,其中免疫复合物的存在表示生物样品中存在寨卡病毒;Containing the biological sample to be detected, and the single domain antibody or antigen-binding fragment, the bispecific antibody, the immunoconjugate, or the fusion protein described in 3, in an amount sufficient to form an immune complex condition, detecting the presence or absence of an immune complex, wherein the presence of the immune complex indicates the presence of Zika virus in the biological sample;
所述的检测方法中,样品来源于人类或来源于蚊虫。In the detection method, the samples are derived from humans or from mosquitoes.
本发明还提供了检测受试者是否感染寨卡病毒的方法,包含:The present invention also provides a method for detecting whether a subject is infected with Zika virus, comprising:
含有来源于疑似感染寨卡病毒的受试者的生物样品,及有效剂量的所述的单域抗体或抗原结合片段,所述的双特异性抗体,所述的免疫偶联物,或所述的融合蛋白,检测单域抗体,抗原结合片段,双特异性抗体,免疫偶联物,或融合蛋白与所述样品的结合,其中单域抗体,抗原结合片段,双特异性抗体,免疫偶联物或融合蛋白的结合相比阴性对照增加表示受试者感染寨卡病毒;其中阴性对照是一个参比标准,单域抗体,抗原结合片段,双特异性抗体,免疫偶联物或融合蛋白与来源于健康受试者的样品的结合;所述的方法中,样品选自血液,血清,血浆,痰液,或活检样品。Containing a biological sample derived from a subject suspected of being infected with Zika virus, and an effective dose of the single domain antibody or antigen-binding fragment, the bispecific antibody, the immunoconjugate, or the A fusion protein that detects the binding of a single domain antibody, antigen-binding fragment, bispecific antibody, immunoconjugate, or fusion protein to the sample, wherein the single domain antibody, antigen-binding fragment, bispecific antibody, immunoconjugate An increase in the binding of the antibody or fusion protein compared to a negative control indicates that the subject is infected with Zika virus; where the negative control is a reference standard, single domain antibody, antigen-binding fragment, bispecific antibody, immunoconjugate or fusion protein with Combination of samples derived from healthy subjects; in said method, the sample is selected from blood, serum, plasma, sputum, or biopsy samples.
本发明还提供了一种药用组合物,该药用组合物含有有效预防剂量的所述的单域抗体或抗原结合片段,所述的双特异性抗体,所述的免疫偶联物,所述的融合蛋白,所述的核酸,或所述的质粒,和一种药学可接受载体。The present invention also provides a pharmaceutical composition, which contains an effective preventive dose of the single domain antibody or antigen-binding fragment, the bispecific antibody, the immunoconjugate, the The fusion protein, the nucleic acid, or the plasmid, and a pharmaceutically acceptable carrier.
本发明在国际上首次获得了针对寨卡病毒的全人源单域抗体。利用此抗体CDR区或部分或全基因,可在原核和真核细胞及任何表达系统中改造和生产不同形式的基因工程抗体,可在临床上预防或治疗寨卡病毒感染相关疾病。The present invention is the first in the world to obtain a fully human single-domain antibody against Zika virus. Using this antibody CDR region or part or whole gene, different forms of genetically engineered antibodies can be engineered and produced in prokaryotic and eukaryotic cells and any expression system, which can prevent or treat diseases related to Zika virus infection clinically.
为了便于理解,以下将通过具体的附图和实施例对本发明进行详细地描述。需要特别指出的是,具体实例和附图仅是为了说明,显然本领域的普通技术人员可以根据本文说明,在本发明的范围内对本发明做出各种各样的修正和改变,这些修正和改变也纳入本发明的范围内。另外,本发明引用了公开文献,这些文献是为了更清楚地描述本发明,它们的全文内容均纳入本文进行参考,就好像它们的全文已经在本文中重复叙述过一样。For ease of understanding, the present invention will be described in detail below through specific drawings and embodiments. It should be pointed out that the specific examples and accompanying drawings are only for illustration. Obviously, those skilled in the art can make various amendments and changes within the scope of the present invention according to the description herein. These amendments and Modifications are also included within the scope of the present invention. In addition, the present invention refers to published documents, which are for the purpose of more clearly describing the present invention, the entire contents of which are incorporated herein by reference as if they had been recited herein in their entirety.
附图说明Description of drawings
图1.利用多克隆噬菌体ELISA检测富集的特异性单域抗体(VH)。Figure 1. Detection of enriched specific single domain antibodies (VH) using polyclonal phage ELISA.
图2.利用ELISA检测特异性单域抗体(VH)与寨卡病毒包膜糖蛋白E的结合能力。Figure 2. Detection of binding ability of specific single domain antibody (VH) to Zika virus envelope glycoprotein E by ELISA.
图3.利用Western Blot和生物膜层表面干涉技术(BLI)检测特异性单域抗体(VH)与寨卡病毒包膜糖蛋白E的结合特性。Figure 3. Detection of binding properties of specific single domain antibody (VH) to Zika virus envelope glycoprotein E by Western Blot and biofilm layer interferometry (BLI).
图4.VH-hFc融合蛋白对寨卡活病毒中和能力的检测。Figure 4. Detection of the neutralizing ability of VH-hFc fusion protein to live Zika virus.
具体实施方式Detailed ways
实施例1Example 1
寨卡病毒E蛋白的生产:Production of Zika virus E protein:
将合成的编码寨卡病毒E蛋白DIII的基因插入到表达质粒中,将表达质粒瞬时转染Expi293细胞,表达EDIII-hFc融合蛋白并进行纯化;The synthetic gene encoding Zika virus E protein DIII was inserted into the expression plasmid, and the expression plasmid was transiently transfected into Expi293 cells to express and purify the EDIII-hFc fusion protein;
寨卡病毒特异性单域抗体(VH)的筛选:Screening of Zika virus-specific single domain antibody (VH):
以人VH 3-23亚家族胚系抗体为模板,利用设计和抗体工程技术引入源于健康成年人、新生儿、癌症病人、艾滋病病人的所有抗体亚家族的重链CDR区(CDR1,CDR2,CDR3),构建一个实际测量库容量为1500亿(1.5×1011)的超大型全人源单域抗体库;利用此噬菌体展示单域抗体文库,针对生物素标记的EDIII蛋白筛选抗体;本发明中,将生物素标记的EDIII蛋白固定在链亲和素包被的磁珠上,1012个噬菌体展示的抗体在常温下于1,2,3,4轮分别与5,4,2,1微克抗原孵育两小时,每轮的筛选所用的噬菌体均为1012个;用多克隆噬菌体ELISA检测抗体的富集,第1,2,3,4轮的噬菌体与包被的蛋白孵育,用抗噬菌体的HRP耦合抗体检测噬菌体与蛋白的结合;根据多克隆噬菌体ELISA结果,在第3,4轮筛选后得到了非常显著的富集(如图1所示);因此,选用这两轮筛选获得的噬菌体,感染TG1细胞并随机挑选克隆进行单克隆噬菌体ELISA,进一步进行测序鉴定富集的单域抗体;Using human VH 3-23 subfamily germline antibody as a template, use design and antibody engineering technology to introduce heavy chain CDR regions (CDR1, CDR2, CDR3), construct a super-large fully human single-domain antibody library with an actual measured library capacity of 150 billion (1.5×10 11 ); use this phage display single-domain antibody library to screen antibodies against biotin-labeled EDIII proteins; the present invention , the biotin-labeled EDIII protein was immobilized on streptavidin-coated magnetic beads, and 10 12 phage-displayed antibodies were compared with 5, 4, 2, 1 rounds at room temperature in 1, 2, 3, 4 rounds Micrograms of antigen were incubated for two hours, and 10 12 phages were used for each round of screening; polyclonal phage ELISA was used to detect the enrichment of antibodies, and the phages in rounds 1, 2, 3, and 4 were incubated with the coated protein, and anti- The HRP-coupled antibody of the phage was used to detect the binding of the phage to the protein; according to the polyclonal phage ELISA results, a very significant enrichment was obtained after the third and fourth rounds of screening (as shown in Figure 1); therefore, these two rounds of screening were selected to obtain The phages were infected with TG1 cells and clones were randomly selected for monoclonal phage ELISA, and further sequenced to identify enriched single domain antibodies;
特异性单域抗体(VH)与寨卡病毒E蛋白的结合能力的检测Detection of Binding Ability of Specific Single Domain Antibody (VH) to Zika Virus E Protein
根据测序结果选择19个克隆,它们的可溶性表达产物的制备基本按文献进行,具体为:将19个克隆的质粒转入HB2151感受态细胞,从过夜生长的氨苄平皿中挑取单个菌落,接种SB细菌培养液,在30度IPTG诱导条件下表达12-14小时;收获细菌并用Ni-TNA从中纯化出单域抗体,将寨卡病毒E蛋白包被在ELISA板上,加入梯度浓度稀释的单域抗体孵育,用抗FLAG标签抗体检测单域抗体与寨卡病毒E蛋白的结合能力,图2的ELISA结果显示,其中有4个单域抗体克隆能非常强的结合E蛋白,分别为n301,n302,n303,和n304;根据测序结果鉴定n302和n304为同一克隆,因此,选择n301,n302和n303进行详细阐述;According to the sequencing results, 19 clones were selected, and the preparation of their soluble expression products was basically carried out according to the literature, specifically: the plasmids of the 19 clones were transferred into HB2151 competent cells, and a single colony was picked from the overnight-grown ampicillin plate and inoculated into SB Bacterial culture medium, expressed under 30-degree IPTG induction conditions for 12-14 hours; harvest the bacteria and purify the single-domain antibody from them with Ni-TNA, coat the Zika virus E protein on the ELISA plate, and add the single-domain diluted in gradient concentration Antibody incubation, using anti-FLAG tag antibody to detect the binding ability of the single domain antibody to the Zika virus E protein, the ELISA results in Figure 2 show that there are 4 single domain antibody clones that can bind to the E protein very strongly, namely n301 and n302 , n303, and n304; according to the sequencing results, n302 and n304 were identified as the same clone, therefore, n301, n302 and n303 were selected for detailed elaboration;
单域抗体n301,n302,n303与寨卡病毒E蛋白的结合特性实验Binding properties of single domain antibodies n301, n302, n303 to Zika virus E protein
5μg寨卡病毒E蛋白经4%-12%SDS-PAGE电泳后,转至PVDF膜,5%脱脂奶粉室温封闭2h,TBST洗涤膜3次,然后分别与100nM的单域抗体4℃孵育过夜,TBST洗膜后加入HRP标记的anti-FLAG二抗(1:1000)室温孵育1.5h,加入ECL化学发光液于化学发光成像仪上曝光;图3A-3B的Western Blot结果表明n301,n302和n303均能与线性的寨卡病毒E蛋白相结合;After 4%-12% SDS-PAGE electrophoresis, 5 μg of Zika virus E protein was transferred to PVDF membrane, blocked with 5% skimmed milk powder at room temperature for 2 hours, washed with TBST for 3 times, and then incubated with 100 nM single domain antibody overnight at 4°C. After washing the membrane with TBST, add HRP-labeled anti-FLAG secondary antibody (1:1000) and incubate at room temperature for 1.5h, add ECL chemiluminescence solution and expose on a chemiluminescence imager; the Western Blot results in Figure 3A-3B show n301, n302 and n303 Both can bind to the linear Zika virus E protein;
将单域抗体n301,n302和n303的重链可变区构建到包含hFc区的真核表达载体中,将表达质粒瞬时转染Expi293细胞并用Protein G纯化VH-hFc融合蛋白,纯化的ZIKV-EDIII-hFc蛋白固定到激活的AR2G光学探头上,与梯度稀释的抗体相结合,整个实验流程如下:(1)平衡(60s);(2)用EDC/NHS激活AR2G(300s);(3)固化抗原(300s);(4)乙醇胺封闭非特异性位点(300s);(5)抗体的结合(Kon,300s);(6)抗体的解离(Koff,1500s)。对于竞争性实验,ZIKV-EDIII-hFc结合到AR2G上,每个抗体都以浓度500nM与抗原结合300s,然后加入混有第一个抗体(500nM)的第二个抗体(500nM),图3B和3C显示拥有同源序列的n302和n303具有相同的KD,分别为6.56nM和6.16nM,而且解离速度很慢,n301的KD值为12μM,说明该抗体与E蛋白的亲和力较低,竞争性实验则是为了进一步了解n301,n302,n303与寨卡病的E蛋白的结合特性,结果显示,在n303存在的情况下,n302与E蛋白的结合明显降低,但n301对n302与E蛋白的结合无明显影响,结果表明n301在EDIII上拥有与n302和n303独一无二的结合位点,而n302和n303靶向EDIII蛋白表面的同一表位;表1显示了.VH-hFc与寨卡病毒包膜糖蛋白E的结合特性;The heavy chain variable regions of single domain antibodies n301, n302 and n303 were constructed into eukaryotic expression vectors containing hFc regions, the expression plasmids were transiently transfected into Expi293 cells and VH-hFc fusion proteins were purified with Protein G, and the purified ZIKV-EDIII -The hFc protein is immobilized on the activated AR2G optical probe and combined with the antibody in gradient dilution. The whole experimental process is as follows: (1) equilibrate (60s); (2) activate AR2G with EDC/NHS (300s); (3) solidify Antigen (300s); (4) ethanolamine blocking non-specific sites (300s); (5) antibody binding (Kon, 300s); (6) antibody dissociation (Koff, 1500s). For competition experiments, ZIKV-EDIII-hFc was bound to AR2G, and each antibody was bound to the antigen at a concentration of 500nM for 300s, and then the second antibody (500nM) mixed with the first antibody (500nM) was added, Figure 3B and 3C shows that n302 and n303 with homologous sequences have the same KD, which are 6.56nM and 6.16nM respectively, and the dissociation speed is very slow. The experiment was to further understand the binding characteristics of n301, n302, n303 and the E protein of Zika disease. The results showed that in the presence of n303, the binding of n302 to the E protein was significantly reduced, but the binding of n301 to n302 and the E protein was significantly reduced. No obvious effect, the results show that n301 has a unique binding site on EDIII with n302 and n303, and n302 and n303 target the same epitope on the surface of EDIII protein; Table 1 shows. VH-hFc and Zika virus envelope sugar Binding properties of protein E;
表1Table 1
VH-hFc融合蛋白对寨卡活病毒中和能力的检测实验Detection experiment of VH-hFc fusion protein neutralizing ability to live Zika virus
将0.2μM的抗体分别与寨卡活病毒一起感染BHK21细胞,孵育后检测细胞裂解液luciferase,并与未加抗体的对照组比较,计算中和百分比,结果如图4所示,n301,n302,和n303总体中和寨卡活病毒的活性不高,其中以n303的中和活性最高。Infect BHK21 cells with 0.2 μM antibody and Zika live virus respectively, detect cell lysate luciferase after incubation, and compare with the control group without antibody, calculate the neutralization percentage, the results are shown in Figure 4, n301, n302, The overall neutralizing activity of live Zika virus was not high, and the neutralizing activity of n303 was the highest.
SEQUENCE LISTINGSEQUENCE LISTING
<110> 复旦大学<110> Fudan University
<120> 针对寨卡病毒的全人源单域抗体或抗原结合片段及应用<120> Fully human single domain antibody or antigen-binding fragment against Zika virus and its application
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<213> n302 HCDR3<213> n302 HCDR3
<400> 8<400> 8
Ala Arg Gly Tyr Gly Asp TyrAla Arg Gly Tyr Gly Asp Tyr
1 51 5
<210> 9<210> 9
<211> 114<211> 114
<212> PRT<212> PRT
<213> n303 VH<213> n303 VH
<400> 9<400> 9
Glu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly GlyGlu Val Gln Leu Val Glu Ser Gly Gly Gly Leu Val Gln Pro Gly Gly
1 5 10 151 5 10 15
Ser Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Val Ser Gly AsnSer Leu Arg Leu Ser Cys Ala Ala Ser Gly Phe Thr Val Ser Gly Asn
20 25 30 20 25 30
Tyr Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp ValTyr Met Ser Trp Val Arg Gln Ala Pro Gly Lys Gly Leu Glu Trp Val
35 40 45 35 40 45
Ser Tyr Ile Ser Ser Ser Gly Ser Thr Ile Tyr Tyr Ala Asp Ser ValSer Tyr Ile Ser Ser Ser Ser Gly Ser Thr Ile Tyr Tyr Ala Asp Ser Val
50 55 60 50 55 60
Lys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Lys Asn Thr Leu TyrLys Gly Arg Phe Thr Ile Ser Arg Asp Asn Ser Lys Asn Thr Leu Tyr
65 70 75 8065 70 75 80
Leu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Met Tyr Tyr CysLeu Gln Met Asn Ser Leu Arg Ala Glu Asp Thr Ala Met Tyr Tyr Cys
85 90 95 85 90 95
Ala Arg Gly Tyr Gly Asp Tyr Val Thr Gln Gly Thr Arg Val Thr ValAla Arg Gly Tyr Gly Asp Tyr Val Thr Gln Gly Thr Arg Val Thr Val
100 105 110 100 105 110
Ser SerSer Ser
<210> 10<210> 10
<211> 8<211> 8
<212> PRT<212> PRT
<213> n303 HCDR1<213> n303 HCDR1
<400> 10<400> 10
Gly Phe Thr Val Ser Gly Asn TyrGly Phe Thr Val Ser Gly Asn Tyr
1 51 5
<210> 11<210> 11
<211> 8<211> 8
<212> PRT<212> PRT
<213> n303 HCDR2<213> n303 HCDR2
<400> 11<400> 11
Ile Ser Ser Ser Gly Ser Thr IleIle Ser Ser Ser Gly Ser Thr Ile
1 51 5
<210> 12<210> 12
<211> 7<211> 7
<212> PRT<212> PRT
<213> n303 HCDR3<213> n303 HCDR3
<400> 12<400> 12
Ala Arg Gly Tyr Gly Asp TyrAla Arg Gly Tyr Gly Asp Tyr
1 51 5
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CN113307865A (en) * | 2020-02-26 | 2021-08-27 | 复旦大学 | Fully human single domain antibody of novel coronavirus and application |
CN114236139A (en) * | 2021-12-30 | 2022-03-25 | 苏州和锐生物科技有限公司 | Antibody detection kit for TNF-α biological preparation, and preparation method |
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CN1914227A (en) * | 2003-12-12 | 2007-02-14 | 中外制药株式会社 | Anti-MpI antibodies |
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CN1330668C (en) * | 2001-01-05 | 2007-08-08 | 辉瑞大药厂 | Antibodies to insulin-like growth factor I receptor |
CN1914227A (en) * | 2003-12-12 | 2007-02-14 | 中外制药株式会社 | Anti-MpI antibodies |
Non-Patent Citations (1)
Title |
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MS DIAMOND: "Monoclonal Anti-Zika virus envelope protein,clone ZV-16(immunoglobin G Mouse)(ATCC® VR-1866TM)", 《ATCC》 * |
Cited By (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN113307865A (en) * | 2020-02-26 | 2021-08-27 | 复旦大学 | Fully human single domain antibody of novel coronavirus and application |
CN113307865B (en) * | 2020-02-26 | 2022-12-13 | 复旦大学 | Fully human single domain antibody of novel coronavirus and application |
CN114236139A (en) * | 2021-12-30 | 2022-03-25 | 苏州和锐生物科技有限公司 | Antibody detection kit for TNF-α biological preparation, and preparation method |
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