CN107988427A - Prawn hepatopancreatic parvovirus(HPV)RAA constant temperature fluorescence detection method and reagent - Google Patents
Prawn hepatopancreatic parvovirus(HPV)RAA constant temperature fluorescence detection method and reagent Download PDFInfo
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- CN107988427A CN107988427A CN201711107944.9A CN201711107944A CN107988427A CN 107988427 A CN107988427 A CN 107988427A CN 201711107944 A CN201711107944 A CN 201711107944A CN 107988427 A CN107988427 A CN 107988427A
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- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/70—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving virus or bacteriophage
- C12Q1/701—Specific hybridization probes
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- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
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Abstract
Description
Group result | CT values | Fluorescence intensity |
First group | 11.95 | 180,000 |
Second group | 8.21 | 310,000 |
3rd group | 12.03 | 160,000 |
4th group | 4.13 | 680,000 |
RAA reaction system components | Volume (μ L) |
A Buffer | 12.5μL |
B Buffer | 2.5μL |
Primer mixed liquor | 4μL |
Specificity fluorescent probe | 0.6μL |
DNA profiling | 2μL |
ddH2O | 28.4μL |
Cumulative volume | 50μL |
Claims (8)
- A kind of 1. prawn hepatopancreatic parvovirus(HPV)The detection kit of nucleic acid, including:Prawn hepatopancreatic parvovirus is positive Primer, reverse primer and specificity fluorescent probe, wherein the prawn hepatopancreatic parvovirus forward primer nucleotide sequence As shown in SEQ ID NO.1, the prawn hepatopancreatic parvovirus reverse primer nucleotide sequence as shown in SEQ ID NO.2, The nucleotide sequence of the specificity fluorescent probe such as SEQ ID NO.3, its 5 ' end are marked with fluorescent reporter group, 3 ' end marks There is fluorescent quenching group.
- 2. kit for detecting nucleic acid according to claim 1, the fluorescent reporter group of the specificity fluorescent probe is selected from One kind in FAM, VIC, JOE, TET, CY3, CY5, ROX, Texas Red or LC RED460, fluorescent quenching gene are selected from One kind in BHQ1, BHQ2, BHQ3, Dabcy1 or Tamra.
- 3. according to the kit for detecting nucleic acid described in claim 1 and 2, primer mixed liquor, specificity fluorescent probe, A are further included Buffer, B Buffer, RAA powdered reagents, prawn hepatopancreatic parvovirus standard items and ddH2At least one of O.
- 4. kit according to claim 3, wherein, the A Buffer are 20% PEG;B Buffer are 280mM MgAc。
- 5. kit according to claim 5, wherein, the component of the RAA powdered reagents is as follows:1mmol/L DNTP, 90ng/ μ L SSB albumen, 120ng/ μ L recA restructuring zymoproteins(SC-recA/BS-recA)Or 30ng/ μ L Rad51, 30ng/ μ L Bsu archaeal dna polymerases, 100mmol/L Tricine, 20% PEG, 5mmol/L dithiothreitol (DTT), 100ng/ μ L fleshes Acid kinase, Exo exonucleases.
- 6. according to the kit for detecting nucleic acid described in claim 1-5 any one, prawn hepatopancreatic parvovirus standard items are Positive plasmid containing prawn hepatopancreatic parvovirus conserved region gene partial sequence.
- 7. kit according to claim 6, described to contain prawn hepatopancreatic parvovirus conserved region gene partial sequence Positive plasmid sequence as shown in SEQ ID NO.4.
- 8. the RAA constant temperature fluorescence detection methods of prawn hepatopancreatic parvovirus, extract the DNA of sample to be tested, with sample to be tested DNA is template, is tried in the forward primer of prawn hepatopancreatic parvovirus, reverse primer, specificity fluorescent probe and RAA dry powder Agent, A Buffer, B Buffer and ddH2Real-time fluorescence RAA reactions are carried out in the presence of O, according to real-time fluorescence RAA amplification curves Analyze sample to be tested;Wherein described prawn hepatopancreatic parvovirus forward primer nucleotide sequence as shown in SEQ ID NO.1, The prawn hepatopancreatic parvovirus reverse primer nucleotide sequence is as shown in SEQ ID NO.2, the specificity fluorescent probe Nucleotide sequence such as SEQ ID No.3, its 5 ' end is marked with fluorescent reporter group, and 3 ' ends are marked with fluorescent quenching group.
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Cited By (5)
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CN110592240A (en) * | 2018-06-13 | 2019-12-20 | 杭州众测生物科技有限公司 | RAA constant temperature fluorescence detection method and reagent for Vibrio Harveyi (VHV) |
CN110592268A (en) * | 2018-06-13 | 2019-12-20 | 杭州众测生物科技有限公司 | RAA constant temperature fluorescence detection method and reagent for lake luo virus (TiLV) |
CN110592275A (en) * | 2018-06-13 | 2019-12-20 | 杭州众测生物科技有限公司 | RAA constant temperature fluorescence detection method and reagent for Infectious Spleen and Kidney Necrosis Virus (ISKNV) of mandarin fish |
CN112251432A (en) * | 2020-10-22 | 2021-01-22 | 中国水产科学研究院黄海水产研究所 | Liver pancreas parvovirus and nucleocapsid protein affinity screening method and application thereof |
CN116814848A (en) * | 2023-04-12 | 2023-09-29 | 中国医学科学院医学实验动物研究所 | Primers, probes and methods for detecting mouse parvovirus based on fluorescent RAA |
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Cited By (7)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN110592240A (en) * | 2018-06-13 | 2019-12-20 | 杭州众测生物科技有限公司 | RAA constant temperature fluorescence detection method and reagent for Vibrio Harveyi (VHV) |
CN110592268A (en) * | 2018-06-13 | 2019-12-20 | 杭州众测生物科技有限公司 | RAA constant temperature fluorescence detection method and reagent for lake luo virus (TiLV) |
CN110592275A (en) * | 2018-06-13 | 2019-12-20 | 杭州众测生物科技有限公司 | RAA constant temperature fluorescence detection method and reagent for Infectious Spleen and Kidney Necrosis Virus (ISKNV) of mandarin fish |
CN112251432A (en) * | 2020-10-22 | 2021-01-22 | 中国水产科学研究院黄海水产研究所 | Liver pancreas parvovirus and nucleocapsid protein affinity screening method and application thereof |
CN112251432B (en) * | 2020-10-22 | 2022-08-12 | 中国水产科学研究院黄海水产研究所 | Liver pancreas parvovirus and nucleocapsid protein affinity screening method and application thereof |
CN116814848A (en) * | 2023-04-12 | 2023-09-29 | 中国医学科学院医学实验动物研究所 | Primers, probes and methods for detecting mouse parvovirus based on fluorescent RAA |
CN116814848B (en) * | 2023-04-12 | 2024-03-19 | 中国医学科学院医学实验动物研究所 | Primers, probes and methods for detecting mouse parvovirus based on fluorescent RAA |
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