CN107164507A - The diagnostic tool of postmenopausal women's primary osteoporosis - Google Patents
The diagnostic tool of postmenopausal women's primary osteoporosis Download PDFInfo
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- CN107164507A CN107164507A CN201710459610.1A CN201710459610A CN107164507A CN 107164507 A CN107164507 A CN 107164507A CN 201710459610 A CN201710459610 A CN 201710459610A CN 107164507 A CN107164507 A CN 107164507A
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- dhrs12
- postmenopausal women
- protein
- osteoporosis
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Abstract
本发明公开了一种绝经后妇女原发性骨质疏松症的诊断工具,该诊断工具是通过检测血液中该DHRS12基因及其表达产物来实现诊断目的的。本发明研究证明与正常绝经女性相比,绝经后妇女原发性骨质疏松症患者血液中DHRS12基因的mRNA表达水平显著下降。根据DHRS12基因与绝经后妇女原发性骨质疏松症之间的存在的相关性,可以制备诊断绝经后妇女原发性骨质疏松症的试剂盒,该试剂盒可在临床上广泛应用。
The invention discloses a diagnostic tool for postmenopausal women's primary osteoporosis. The diagnostic tool realizes the diagnostic purpose by detecting the DHRS12 gene and its expression product in blood. The research of the present invention proves that compared with normal postmenopausal women, the mRNA expression level of DHRS12 gene in the blood of postmenopausal women with primary osteoporosis is significantly decreased. According to the correlation between the DHRS12 gene and primary osteoporosis in postmenopausal women, a kit for diagnosing primary osteoporosis in postmenopausal women can be prepared, and the kit can be widely used clinically.
Description
技术领域technical field
本发明属于诊断领域,涉及一种绝经后妇女原发性骨质疏松症的诊断工具,还涉及血液中DHRS12基因在制备绝经后妇女原发性骨质疏松症诊断工具中的应用。The invention belongs to the field of diagnosis, relates to a diagnostic tool for primary osteoporosis in postmenopausal women, and also relates to the application of DHRS12 gene in blood in preparing the diagnostic tool for primary osteoporosis in postmenopausal women.
背景技术Background technique
骨质疏松症(osteoporosis,OP)是一种以骨量低下、骨微结构破坏、导致骨脆性增加、易发生骨折为特征的全身性骨病(WHO)。2001年美国国立卫生研究院(NIH)提出骨质疏松症是以骨强度下降、骨折风险性增加为特征的骨骼系统疾病,骨强度反映了骨骼的两个主要方面,即骨矿密度和骨质量。Osteoporosis (OP) is a systemic bone disease characterized by low bone mass, destruction of bone microarchitecture, increased bone fragility, and susceptibility to fracture (WHO). In 2001, the National Institutes of Health (NIH) of the United States proposed that osteoporosis is a disease of the skeletal system characterized by decreased bone strength and increased risk of fracture. Bone strength reflects two main aspects of bones, namely bone mineral density and bone quality. .
该病可发生于不同性别和任何年龄,但多见于绝经后妇女和老年男性。骨质疏松症分为原发性和继发性两大类。原发性骨质疏松症又分为绝经后骨质疏松症(I型)、老年性骨质疏松症(II型)和特发性骨质疏松(包括青少年型)3种。绝经后骨质疏松症一般发生在妇女绝经后5-10年内,因绝经后卵巢合成雌激素减少所致,为骨量减少和骨组织微结构破坏,以致骨骼脆性增高从而易发生骨骼的一种全身性疾病。女性绝经后骨密度(bonemineral density,BMD)丢失速度很快,年丢失率为1.5%-2.5%,从而导致骨密度急剧下降,使得绝经后女性成为骨质疏松症的高发人群。The disease can occur in different genders and at any age, but it is more common in postmenopausal women and older men. Osteoporosis is divided into primary and secondary two categories. Primary osteoporosis is further divided into three types: postmenopausal osteoporosis (type I), senile osteoporosis (type II) and idiopathic osteoporosis (including juvenile type). Postmenopausal osteoporosis generally occurs in women within 5-10 years after menopause. It is caused by the decrease of estrogen synthesized by postmenopausal ovary. systemic disease. Postmenopausal women lose bone mineral density (BMD) rapidly, with an annual loss rate of 1.5%-2.5%, resulting in a sharp decline in bone mineral density, making postmenopausal women a high-risk population for osteoporosis.
具有以下高危因素者易患绝经后骨质疏松症:Individuals with the following high-risk factors are predisposed to developing postmenopausal osteoporosis:
雌激素缺乏:雌激素缺乏,被认为是引起绝经后骨质疏松症的主要因素,绝经后卵巢功能减退,分泌雌激素水平降低,同时伴有维生素D、钙的摄入不足,造成继发性骨丢失。Estrogen deficiency: Estrogen deficiency is considered to be the main factor causing postmenopausal osteoporosis. The postmenopausal ovarian function declines, the level of estrogen secretion decreases, and at the same time, the intake of vitamin D and calcium is insufficient, resulting in secondary osteoporosis. Bone loss.
遗传因素:骨质疏松症多见于白种人,其次是黄种人,而黑种人最少。骨密度为诊断骨质疏松症的主要指标,骨密度值主要决定于遗传因素,其次是受环境因素的影响。Genetic factors: Osteoporosis is more common in whites, followed by yellows, and the least in blacks. Bone mineral density is the main index for diagnosing osteoporosis. The value of bone mineral density is mainly determined by genetic factors, followed by environmental factors.
营养因素:钙缺乏,已发现青幼年时钙的摄入量与成年人的骨量峰直接有关。低钙饮食(<10mg·kg-1·d-1)者有3/4患有骨质疏松,而高钙饮食(10mg·kg-1·d-1)者有1/4患有骨质疏松;长期蛋白质营养缺乏,造成血浆蛋白降低,骨基质合成不足,新骨生成落后,如同是伴有钙的缺乏,骨质疏松会加快出现;维生素C缺乏,是骨基质羟脯氨酸合成不可缺少的,如缺乏可使骨基质合成减少。Nutritional factors: Calcium deficiency, it has been found that calcium intake in adolescence is directly related to peak bone mass in adults. 3/4 of people with low calcium diet (<10mg·kg -1 ·d -1 ) suffer from osteoporosis, while 1/4 of those with high calcium diet (10mg·kg -1 ·d -1 ) suffer from osteoporosis Osteoporosis; long-term lack of protein nutrition, resulting in decreased plasma protein, insufficient bone matrix synthesis, and lagging new bone formation, as if accompanied by calcium deficiency, osteoporosis will accelerate; vitamin C deficiency is the inability of bone matrix hydroxyproline synthesis Lack of, such as lack of bone matrix synthesis can be reduced.
废用因素:肌肉对骨组织是一种机械力的影响,肌肉发达则骨骼粗壮,骨密度高。老年人活动减少,肌肉强度减弱,机械刺激减少,骨量减少。同时肌肉强度的减弱和协调障碍是老年人较容易摔倒,伴骨量减少时,则已发生骨折。Disuse factors: Muscle is a kind of mechanical force on bone tissue. If muscle is developed, the bone will be strong and the bone density will be high. The elderly have reduced activity, weakened muscle strength, reduced mechanical stimulation, and reduced bone mass. At the same time, the weakening of muscle strength and coordination disorders make the elderly more likely to fall, and when accompanied by bone loss, fractures have already occurred.
其他因素:酗酒、嗜烟、过多咖啡和咖啡因的摄入、肝素使用均是本病的危险因素。酒精中毒可影响钙的吸收,酒精也直接作用于成骨细胞,抑制骨的形成。咖啡因摄入过多是尿钙和内源性粪钙丢失:肝素可引起骨质疏松,一般研究表明每天接受1500U以上的肝素治疗患者中60%的发展成为骨质疏松症。Other factors: Alcoholism, smoking, excessive coffee and caffeine intake, and heparin use are all risk factors for this disease. Alcoholism can affect calcium absorption, and alcohol also acts directly on osteoblasts, inhibiting bone formation. Excessive caffeine intake is the loss of urinary calcium and endogenous fecal calcium: heparin can cause osteoporosis, general research shows that 60% of patients who receive more than 1500U of heparin per day develop into osteoporosis.
此外,年龄增长、服用皮质类固醇和抗惊厥药物、具有骨质疏松症家族史或具有影响骨量的特殊基因、早绝经或绝经前行双侧卵巢切除术也是绝经后骨质疏松症的高危因素。In addition, increasing age, use of corticosteroids and anticonvulsant drugs, family history of osteoporosis or specific genes affecting bone mass, early menopause or bilateral oophorectomy before menopause are also high risk factors for postmenopausal osteoporosis .
绝经后骨质疏松症早期可以没有任何症状,骨质在不知不觉中流失,直到发生骨折后才被意识到,亦被称之为“无声杀手”,由于早期没有典型的临床症状,所以常常不能引起医患足够的重视,以致许多患者只能无奈的面对从病痛到恢复的漫漫长路。Postmenopausal osteoporosis may have no symptoms in the early stage. Bone loss occurs unconsciously, and it is not realized until a fracture occurs. It is also called the "silent killer". Because there are no typical clinical symptoms in the early stage, it is often It cannot attract enough attention from doctors and patients, so that many patients can only helplessly face the long road from illness to recovery.
诊断骨质疏松症,首先必须进行骨密度的测定。骨密度实际上就是表示骨的健康程度,或是反过来说表示骨的老化程度。常用的检测手段:To diagnose osteoporosis, bone density must first be measured. Bone density actually indicates the health of the bones, or conversely, the aging of the bones. Commonly used detection methods:
X线摄片法:使用历史最早,但由于有放射性,其测验结果不能量化,已逐渐被取代。X-ray film method: the earliest use history, but due to radioactivity, its test results cannot be quantified, and it has been gradually replaced.
单光子测定仪:费用低、方便、辐射量小而安全。但因不能测躯干骨以及不能区别皮质骨、松质骨、软组织等而受限制,已逐渐被取代。Single photon detector: low cost, convenient, small radiation and safe. However, it is limited due to the inability to measure the trunk bone and the inability to distinguish cortical bone, cancellous bone, and soft tissue, and has gradually been replaced.
定量超声法:低廉、方便、又无放射性损伤。适合各年龄段人群的骨状态普查工作。不仅能检测骨密度,还能了解骨的质量即可反应骨的微结构及弹性。但目前只用于跟骨、胫骨和指骨,不能进行全身骨骼的检测。Quantitative ultrasound: cheap, convenient, and no radiation damage. It is suitable for bone status census work of people of all ages. It can not only detect bone density, but also understand the quality of bone, which can reflect the microstructure and elasticity of bone. However, it is currently only used for the calcaneus, tibia and phalanges, and cannot be used for the detection of whole body bones.
双能X线吸收法:是目前最理想的测定法,是诊断骨质疏松症的金标准,国内外通用,可测全身各部位骨骼,也能测软组织厚度,但该设备数量较少且价格昂贵,因此对于骨质疏松症患者的诊断来说经济负担大。为此寻找一种敏感性高、准确度高且价格合理的诊断骨质疏松症的方法是亟待解决的问题。Dual-energy X-ray absorptiometry: It is the most ideal measurement method at present, and it is the gold standard for diagnosing osteoporosis. Expensive and therefore economically burdensome for diagnosis in osteoporosis patients. Therefore, finding a method for diagnosing osteoporosis with high sensitivity, high accuracy and reasonable price is an urgent problem to be solved.
近年来,遗传因素已经成为了骨生物学中最活跃的研究领域之一,很多基因已经被确定为调节古骨密度的候选基因。这些候选基因大多数都是影响骨代谢的基因。如维生素D受体(VDR)、脂蛋白受体相关基因5(LRP5)、I型胶原蛋白(COLIA1)、雌激素受体α、转化生长因子TGFβ1、骨形态发生蛋白(BMPs)、Runx2、Osterix(Osx)、Sclerostin、TCIRG1、IGF-1、IL-1(骨质疏松症,张弛,中国骨质疏松杂志,2010年10月,802-813)。此外,已经有相当数量的专利申请涉及骨质疏松症的基因诊断,如申请号为:201610272604.0、201610922798.4、201510628024.6、201510628081.4、201510725408.X、201510628042.4、201610530383.2、201510629348.1、201510627056.4、201510627060.0、201610555353.7的专利。可见利用基因来诊断骨质疏松症成为了今后骨质疏松症早期诊断的发展趋势。In recent years, genetic factors have become one of the most active research fields in bone biology, and many genes have been identified as candidate genes regulating ancient BMD. Most of these candidate genes are genes that affect bone metabolism. Such as vitamin D receptor (VDR), lipoprotein receptor-related gene 5 (LRP5), type I collagen (COLIA1), estrogen receptor alpha, transforming growth factor TGF beta 1, bone morphogenetic proteins (BMPs), Runx2, Osterix (Osx), Sclerostin, TCIRG1, IGF-1, IL-1 (osteoporosis, relaxation, Chinese Journal of Osteoporosis, October 2010, 802-813).此外,已经有相当数量的专利申请涉及骨质疏松症的基因诊断,如申请号为:201610272604.0、201610922798.4、201510628024.6、201510628081.4、201510725408.X、201510628042.4、201610530383.2、201510629348.1、201510627056.4、201510627060.0、201610555353.7的专利。 It can be seen that the use of genes to diagnose osteoporosis has become the development trend of early diagnosis of osteoporosis in the future.
发明内容Contents of the invention
本发明首次发现DHRS12(Dehydrogenase/reductase 12)基因在绝经后妇女原发性骨质疏松症患者的血液中的含量比正常人低很多,DHRS12基因的差异表达可作为诊断绝经后妇女原发性骨质疏松症的一种方法,据此可以开发诊断绝经后妇女原发性骨质疏松症的工具。The present invention finds for the first time that the content of DHRS12 (Dehydrogenase/reductase 12) gene in the blood of patients with primary osteoporosis in postmenopausal women is much lower than that of normal people. A method for osteoporosis, whereby a tool for diagnosing primary osteoporosis in postmenopausal women could be developed.
具体的,本发明提供了检测DHRS12基因表达的产品在制备诊断绝经后妇女原发性骨质疏松症的工具中的应用。Specifically, the present invention provides the application of the product for detecting the expression of DHRS12 gene in the preparation of tools for diagnosing primary osteoporosis in postmenopausal women.
进一步,上面所提到的检测产品包括:通过RT-PCR、实时定量PCR、免疫检测、原位杂交、芯片或高通量测序平台检测DHRS12基因的表达水平以诊断绝经后妇女原发性骨质疏松症的产品。Further, the detection products mentioned above include: detection of the expression level of DHRS12 gene by RT-PCR, real-time quantitative PCR, immunoassay, in situ hybridization, chip or high-throughput sequencing platform to diagnose primary osteoarthritis in postmenopausal women Porosis products.
进一步,所述用RT-PCR诊断绝经后妇女原发性骨质疏松症的产品至少包括一对特异扩增DHRS12基因的引物;所述用实时定量PCR诊断绝经后妇女原发性骨质疏松症的产品至少包括一对特异扩增DHRS12基因的引物;所述用免疫检测诊断绝经后妇女原发性骨质疏松症的产品包括:与DHRS12蛋白特异性结合的抗体;所述用原位杂交诊断绝经后妇女原发性骨质疏松症的产品包括:与DHRS12基因的核酸序列杂交的探针;所述用芯片诊断绝经后妇女原发性骨质疏松症的产品包括:蛋白芯片和基因芯片;其中,蛋白芯片包括与DHRS12蛋白特异性结合的抗体,基因芯片包括与DHRS12基因的核酸序列杂交的探针。Further, the product for diagnosing primary osteoporosis in postmenopausal women by RT-PCR includes at least a pair of primers for specific amplification of the DHRS12 gene; the diagnosis of primary osteoporosis in postmenopausal women by real-time quantitative PCR The product includes at least one pair of primers for specific amplification of the DHRS12 gene; the product for diagnosing primary osteoporosis in postmenopausal women by immunoassay includes: an antibody specifically binding to the DHRS12 protein; the in situ hybridization diagnosis The products for primary osteoporosis in postmenopausal women include: probes hybridized with the nucleic acid sequence of the DHRS12 gene; the products for diagnosing primary osteoporosis in postmenopausal women with chips include: protein chips and gene chips; Wherein, the protein chip includes an antibody specifically combined with the DHRS12 protein, and the gene chip includes a probe hybridized with the nucleic acid sequence of the DHRS12 gene.
在本发明的具体实施方案中,所述用实时定量PCR诊断绝经后妇女原发性骨质疏松症的产品至少包括一对特异扩增DHRS12基因的引物的序列如SEQ ID NO.3和SEQ IDNO.4所示。In a specific embodiment of the present invention, the product for diagnosing primary osteoporosis in postmenopausal women by real-time quantitative PCR includes at least a pair of sequences of primers for specific amplification of DHRS12 gene such as SEQ ID NO.3 and SEQ ID NO .4 shown.
优选地,所述诊断工具包括芯片、试剂盒、试纸或高通量测序平台。其中,高通量测序平台是一种特殊的诊断工具,检测DHRS12基因表达的产品可以应用于该平台实现对DHRS12基因的表达情况的检测。随着高通量测序技术的发展,对一个人的基因表达谱的构建将成为十分便捷的工作。通过对比疾病患者和正常人群的基因表达谱,容易分析出哪个基因的异常与疾病相关。因此,在高通量测序中获知DHRS12基因的异常与绝经后妇女原发性骨质疏松症相关也属于DHRS12基因的用途,同样在本发明的保护范围之内。Preferably, the diagnostic tools include chips, kits, test strips or high-throughput sequencing platforms. Among them, the high-throughput sequencing platform is a special diagnostic tool, and products for detecting DHRS12 gene expression can be applied to this platform to detect the expression of DHRS12 gene. With the development of high-throughput sequencing technology, the construction of a person's gene expression profile will become a very convenient task. By comparing the gene expression profiles of disease patients and normal people, it is easy to analyze which gene abnormality is related to the disease. Therefore, it is known in high-throughput sequencing that the abnormality of the DHRS12 gene is related to primary osteoporosis in postmenopausal women, which also belongs to the use of the DHRS12 gene, and is also within the protection scope of the present invention.
本发明还提供了一种诊断绝经后妇女原发性骨质疏松症的工具,所述产品包括芯片、试剂盒、试纸、或高通量测序平台。The invention also provides a tool for diagnosing primary osteoporosis in postmenopausal women, and the product includes a chip, a kit, a test strip, or a high-throughput sequencing platform.
其中,所述芯片包括基因芯片、蛋白质芯片;所述基因芯片包括固相载体以及固定在固相载体的寡核苷酸探针,所述寡核苷酸探针包括用于检测DHRS12基因转录水平的针对DHRS12基因的寡核苷酸探针;所述蛋白质芯片包括固相载体以及固定在固相载体的DHRS12蛋白的特异性抗体;所述基因芯片可用于检测包括DHRS12基因在内的多个基因(例如,与绝经后妇女原发性骨质疏松症相关的多个基因)的表达水平。所述蛋白质芯片可用于检测包括DHRS12蛋白在内的多个蛋白质(例如与绝经后妇女原发性骨质疏松症相关的多个蛋白质)的表达水平。通过将多个与绝经后妇女原发性骨质疏松症的标志物同时检测,可大大提高绝经后妇女原发性骨质疏松症诊断的准确率。Wherein, the chip includes a gene chip and a protein chip; the gene chip includes a solid phase carrier and an oligonucleotide probe fixed on the solid phase carrier, and the oligonucleotide probe includes The oligonucleotide probe for the DHRS12 gene; the protein chip includes a solid phase carrier and the specific antibody of the DHRS12 protein immobilized on the solid phase carrier; the gene chip can be used to detect multiple genes including the DHRS12 gene (eg, expression levels of multiple genes associated with primary osteoporosis in postmenopausal women). The protein chip can be used to detect the expression levels of multiple proteins including DHRS12 protein (for example, multiple proteins related to primary osteoporosis in postmenopausal women). By simultaneously detecting multiple markers of primary osteoporosis in postmenopausal women, the accuracy of diagnosis of primary osteoporosis in postmenopausal women can be greatly improved.
其中,所述试剂盒包括基因检测试剂盒和蛋白免疫检测试剂盒;所述基因检测试剂盒包括用于检测DHRS12基因转录水平的试剂;所述蛋白免疫检测试剂盒包括DHRS12蛋白的特异性抗体。进一步,所述试剂包括使用RT-PCR、实时定量PCR、免疫检测、原位杂交或芯片方法检测DHRS12基因表达水平过程中所需的试剂。优选度,所述试剂包括针对DHRS12基因的引物和/或探针。根据DHRS12基因的核苷酸序列信息容易设计出可以用于检测DHRS12基因表达水平的引物和探针。Wherein, the kit includes a gene detection kit and a protein immune detection kit; the gene detection kit includes reagents for detecting DHRS12 gene transcription level; the protein immune detection kit includes a specific antibody for DHRS12 protein. Further, the reagents include the reagents required in the process of detecting the expression level of DHRS12 gene by using RT-PCR, real-time quantitative PCR, immunoassay, in situ hybridization or chip method. Preferably, the reagents include primers and/or probes for the DHRS12 gene. Primers and probes that can be used to detect the expression level of the DHRS12 gene can be easily designed according to the nucleotide sequence information of the DHRS12 gene.
所述高通量测序平台包括检测DHRS12基因表达水平的试剂。The high-throughput sequencing platform includes reagents for detecting the expression level of the DHRS12 gene.
所述试纸包括试纸载体和固定在试纸载体上的寡核苷酸,所述寡核苷酸能够检测DHRS12基因的转录水平。The test paper includes a test paper carrier and an oligonucleotide fixed on the test paper carrier, and the oligonucleotide can detect the transcription level of the DHRS12 gene.
与DHRS12基因的核酸序列杂交的探针可以是DNA、RNA、DNA-RNA嵌合体、PNA或其它衍生物。所述探针的长度没有限制,只要完成特异性杂交、与目的核苷酸序列特异性结合,任何长度都可以。所述探针的长度可短至25、20、15、13或10个碱基长度。同样,所述探针的长度可长至60、80、100、150、300个碱基对或更长,甚至整个基因。由于不同的探针长度对杂交效率、信号特异性有不同的影响,所述探针的长度通常至少是14个碱基对,最长一般不超过30个碱基对,与目的核苷酸序列互补的长度以15-25个碱基对最佳。所述探针自身互补序列最好少于4个碱基对,以免影响杂交效率。The probe hybridizing with the nucleic acid sequence of the DHRS12 gene can be DNA, RNA, DNA-RNA chimera, PNA or other derivatives. The length of the probe is not limited, as long as it completes specific hybridization and specifically binds to the target nucleotide sequence, any length is acceptable. The probes can be as short as 25, 20, 15, 13 or 10 bases in length. Likewise, the probes can be as long as 60, 80, 100, 150, 300 base pairs or longer, or even the entire gene. Since different probe lengths have different effects on hybridization efficiency and signal specificity, the length of the probe is usually at least 14 base pairs, and the longest is generally no more than 30 base pairs. The optimal length of complementarity is 15-25 base pairs. The self-complementary sequence of the probe is preferably less than 4 base pairs, so as not to affect the hybridization efficiency.
进一步,所述DHRS12蛋白的特异性抗体包括单克隆抗体、多克隆抗体。所述DHRS12蛋白的特异性抗体包括完整的抗体分子、抗体的任何片段或修饰(例如,,嵌合抗体、scFv、Fab、F(ab’)2、Fv等。只要所述片段能够保留与DHRS12蛋白的结合能力即可。用于蛋白质水平的抗体的制备时本领域技术人员公知的,并且本发明可以使用任何方法来制备所述抗体。Further, the specific antibody of DHRS12 protein includes monoclonal antibody and polyclonal antibody. The specific antibody of the DHRS12 protein includes the complete antibody molecule, any fragment or modification of the antibody (for example, chimeric antibody, scFv, Fab, F(ab') 2, Fv, etc. As long as the fragment can be retained with DHRS12 Protein-binding ability is enough. Preparation of antibodies for protein level is well known to those skilled in the art, and any method can be used in the present invention to prepare the antibodies.
在本发明的具体实施方案中,所述针对DHRS12基因的引物序列如下:正向引物序列如SEQ ID NO.3所示,反向引物如SEQ ID NO.4所示。In a specific embodiment of the present invention, the primer sequence for the DHRS12 gene is as follows: the sequence of the forward primer is shown in SEQ ID NO.3, and the sequence of the reverse primer is shown in SEQ ID NO.4.
用于诊断绝经后妇女原发性骨质疏松症的DHRS12基因及其表达产物的来源包括但不限于血液、组织液、尿液、唾液、脊髓液等可以获得基因组DNA的体液。在本发明的具体实施方案中,用于诊断绝经后妇女原发性骨质疏松症的DHRS12基因及其表达产物的来源是血液。在发明的具体实施方案中,血液是取自绝经后妇女原发性骨质疏松症患者和正常骨密度女性的血液。The sources of the DHRS12 gene and its expression products used for diagnosing primary osteoporosis in postmenopausal women include but are not limited to blood, interstitial fluid, urine, saliva, spinal fluid and other body fluids from which genomic DNA can be obtained. In a specific embodiment of the present invention, the source of the DHRS12 gene and its expression product for diagnosing primary osteoporosis in postmenopausal women is blood. In a specific embodiment of the invention, the blood is obtained from postmenopausal women with primary osteoporosis and from women with normal bone density.
本发明的DHRS12基因的具体序列可在国际公共核酸序列数据库GeneBank中查询到。The specific sequence of the DHRS12 gene of the present invention can be found in GeneBank, an international public nucleic acid sequence database.
本发明的DHRS12基因的编码序列包括以下任一一种DNA分子:The coding sequence of the DHRS12 gene of the present invention includes any one of the following DNA molecules:
(1)序列表中SEQ ID NO.1所示的DNA序列;(1) the DNA sequence shown in SEQ ID NO.1 in the sequence listing;
(2)在严格条件下与1)限定的DNA序列杂交且编码相同功能蛋白质的DNA序列;(2) A DNA sequence that hybridizes to the DNA sequence defined in 1) under stringent conditions and encodes the same functional protein;
(3)与(1)或(2)限定的DNA序列具有70%、优选地,90%以上同源性,且编码相同功能蛋白质的DNA分子。(3) A DNA molecule having 70%, preferably more than 90%, homology with the DNA sequence defined in (1) or (2), and encoding the same functional protein.
在本发明的具体实施方案中,所述DHRS12基因的编码序列是SEQ ID NO.1所示的DNA序列。In a specific embodiment of the present invention, the coding sequence of the DHRS12 gene is the DNA sequence shown in SEQ ID NO.1.
在本发明的上下文中,DHRS12基因表达产物包括DHRS12蛋白以及DHRS12蛋白的部分肽。所述DHRS12蛋白的部分肽含有与绝经后妇女原发性骨质疏松症相关的功能域。In the context of the present invention, DHRS12 gene expression products include DHRS12 protein and partial peptides of DHRS12 protein. The partial peptide of the DHRS12 protein contains a functional domain related to primary osteoporosis in postmenopausal women.
“DHRS12蛋白”包括DHRS12蛋白以及DHRS12蛋白的任何功能等同物。所述功能等同物包括DHRS12蛋白保守性变异蛋白质、或其活性片段,或其活性衍生物,等位变异体、天然突变体、诱导突变体、在高或低的严紧条件下能与DHRS12的DNA杂交的DNA所编码的蛋白质。"DHRS12 protein" includes DHRS12 protein and any functional equivalents of DHRS12 protein. The functional equivalents include DHRS12 protein conservative variant proteins, or active fragments thereof, or active derivatives thereof, allelic variants, natural mutants, induced mutants, DNA capable of binding to DHRS12 under high or low stringent conditions The protein encoded by the hybridized DNA.
优选地,DHRS12蛋白是具有下列氨基酸序列的蛋白质:Preferably, the DHRS12 protein is a protein having the following amino acid sequence:
(1)由序列表中SEQ ID NO.2所示的氨基酸序列组成的蛋白质;(1) A protein consisting of the amino acid sequence shown in SEQ ID NO.2 in the sequence listing;
(2)将SEQ ID NO.2所示的氨基酸序列经过一个或几个氨基酸残基的取代和/或缺失和/或添加且与SEQ ID NO.2所示的氨基酸序列具有相同功能的由SEQ ID NO.2所示的氨基酸序列衍生的蛋白质。取代、缺失或者添加的氨基酸的个数通常为1-50个,较佳地1-30个,更佳地1-20个,最佳地1-10个。(2) The amino acid sequence shown in SEQ ID NO.2 is subjected to substitution and/or deletion and/or addition of one or several amino acid residues and has the same function as the amino acid sequence shown in SEQ ID NO.2. A protein derived from the amino acid sequence shown in ID NO.2. The number of substituted, deleted or added amino acids is usually 1-50, preferably 1-30, more preferably 1-20, most preferably 1-10.
(3)与SEQ ID NO.2所示的氨基酸序列具有至少80%同源性(又称为序列同一性),更优选地,与SEQ ID NO.2所示的氨基酸序列至少约90%至95%的同源性,常为96%、97%、98%、99%同源性的氨基酸序列构成的多肽。(3) having at least 80% homology (also known as sequence identity) with the amino acid sequence shown in SEQ ID NO.2, more preferably at least about 90% to the amino acid sequence shown in SEQ ID NO.2 95% homology, usually 96%, 97%, 98%, 99% homology of amino acid sequence polypeptide.
在本发明的具体实施方案中,所述DHRS12蛋白是具有SEQ ID NO.2所示的氨基酸序列的蛋白质。In a specific embodiment of the present invention, the DHRS12 protein is a protein having the amino acid sequence shown in SEQ ID NO.2.
通常,已知的是,一个蛋白质中一个或多个氨基酸的修饰不会影响蛋白质的功能。本领域技术人员会认可改变单个氨基酸或小百分比的氨基酸或对氨基酸序列的个别添加、缺失、插入、替换是保守修饰,其中蛋白质的改变产生具有相似功能的蛋白质。提供功能相似的氨基酸的保守替换表是本领域公知的。In general, it is known that the modification of one or more amino acids in a protein does not affect the function of the protein. Those skilled in the art will recognize that changes to single amino acids or small percentages of amino acids or individual additions, deletions, insertions, substitutions to an amino acid sequence are conservative modifications where changes to a protein result in a protein with similar function. Conservative substitution tables providing functionally similar amino acids are well known in the art.
通过添加一个氨基酸或多个氨基酸残基修饰的蛋白质的例子是DHRS12蛋白的融合蛋白。对于与DHRS12蛋白融合的肽或者蛋白质没有限制,只要所得的融合蛋白保留DHRS12蛋白的生物学活性即可。An example of a protein modified by adding an amino acid or amino acid residues is a fusion protein of the DHRS12 protein. There is no limitation on the peptide or protein fused with the DHRS12 protein, as long as the resulting fusion protein retains the biological activity of the DHRS12 protein.
本发明的DHRS12蛋白也包括对SEQ ID NO.2所示的氨基酸序列的非保守修饰,只要经过修饰的蛋白质仍然能够保留DHRS12蛋白的生物学活性即可。在此类修饰蛋白质中突变的氨基酸数目通常是10个或者更少,例如6个或者更少,例如3个或者更少。The DHRS12 protein of the present invention also includes non-conservative modifications to the amino acid sequence shown in SEQ ID NO.2, as long as the modified protein can still retain the biological activity of the DHRS12 protein. The number of amino acids mutated in such modified proteins is usually 10 or less, such as 6 or less, such as 3 or less.
在本发明的上下文中,“诊断绝经后妇女原发性骨质疏松症”既包括判断绝经后妇女是否已经患有原发性骨质疏松症、也包括判断绝经后妇女是否存在患有原发性骨质疏松症的风险,还包括预测绝经后妇女原发性骨质疏松症患者的预后,还包括判断患有原发性骨质疏松症的绝经后妇女在经过治疗后是否已经复发。In the context of the present invention, "diagnosing primary osteoporosis in postmenopausal women" includes judging whether postmenopausal women already suffer from primary osteoporosis, and also includes judging whether postmenopausal women have primary osteoporosis It also includes predicting the prognosis of patients with primary osteoporosis in postmenopausal women, and also includes judging whether postmenopausal women with primary osteoporosis have relapsed after treatment.
附图说明Description of drawings
图1显示利用QPCR检测DHRS12基因在绝经后妇女原发性骨质疏松症患者和正常绝经女性中的表达差异;Figure 1 shows the difference in expression of DHRS12 gene detected by QPCR in postmenopausal women with primary osteoporosis and normal menopausal women;
图2显示利用测序检测DHRS12基因在绝经后妇女原发性骨质疏松症患者和正常绝经女性中的表达差异。Figure 2 shows the difference in expression of the DHRS12 gene detected by sequencing between postmenopausal women with primary osteoporosis and normal menopausal women.
具体的实施方式specific implementation
下面结合附图和实施例对本发明作进一步详细的说明。以下实施例仅用于说明本发明而不用于限制本发明的范围。实施例中未注明具体条件的实验方法,通常按照常规条件,例如Sambrook等人,分子克隆:实验室手册(New York:Cold Spring HarborLaboratoryPress,1989)中所述的条件,或按照制造厂商所建议的条件。The present invention will be described in further detail below in conjunction with the accompanying drawings and embodiments. The following examples are only used to illustrate the present invention and are not intended to limit the scope of the present invention. The experimental method that does not indicate specific condition in the embodiment, usually according to conventional conditions, such as Sambrook et al., molecular cloning: the conditions described in the laboratory handbook (New York: Cold Spring Harbor Laboratory Press, 1989), or according to the manufacturer's suggestion conditions of.
实施例1筛选绝经后妇女原发性骨质疏松症患者和正常绝经女性中差异表达的基因Example 1 Screening of genes differentially expressed in postmenopausal women with primary osteoporosis and normal menopausal women
1、研究对象:1. Research object:
选择绝经后妇女原发性骨质疏松症患者3例,年龄分别为81岁、68岁、79岁;正常绝经女性2例,年龄分别为67岁、68岁。Three postmenopausal women with primary osteoporosis, aged 81, 68, and 79 years old, and two normal postmenopausal women, aged 67 and 68, were selected.
绝经后妇女原发性骨质疏松症患者的纳入标准:绝经超过12个月的汉族绝经后妇女,患者均知情同意;Inclusion criteria for postmenopausal women with primary osteoporosis: Han postmenopausal women who have menopause for more than 12 months, and all patients have informed consent;
绝经后妇女原发性骨质疏松症患者的排除标准包括①既往接受过抗骨吸收药物(包括降钙素、双磷酸盐、雌激素等)或促骨形成药物(如甲状旁腺素等)治疗者(单纯使用钙剂和/或维生素D者除外);②长期服用糖皮质激素者;③合并有恶性肿瘤、骨转移肿瘤和其他内分泌、骨代谢病史(如类风湿性关节炎、甲亢、肾上腺疾病等)者;④脊柱或髋部等部位新鲜骨折或髋关节手术置换者;⑤严重肝肾疾病、长期卧床≧3个月者;⑥精神障碍、认知障碍。Exclusion criteria for patients with primary osteoporosis in postmenopausal women include ① Previously received anti-resorptive drugs (including calcitonin, bisphosphonates, estrogen, etc.) or bone-promoting drugs (such as parathyroid hormone, etc.) Treatment (except for those who simply use calcium and/or vitamin D); ② long-term use of glucocorticoids; ③ combined with malignant tumors, bone metastases, and other endocrine and bone metabolism history (such as rheumatoid arthritis, hyperthyroidism, Adrenal gland disease, etc.); ④fresh fractures of the spine or hip or hip joint replacement; ⑤severe liver and kidney disease, long-term bed rest ≥ 3 months; ⑥mental disorders, cognitive impairments.
2、血液总RNA提取2. Total RNA extraction from blood
使用博凌科为TRIpure LS Reagent血液(血液样本)RNA抽提试剂进行血液总RNA的提取。The blood total RNA was extracted using Bolinko TRIpure LS Reagent blood (blood sample) RNA extraction reagent.
基本步骤:The basic steps:
(1)按照3:1的体积比例加入TRIpure LS reagent和血液振荡混匀;(1) Add TRIpure LS reagent and blood in a volume ratio of 3:1 and mix well;
(2)加入氯仿帮助有机相和水相分层;(2) adding chloroform to help the organic phase and the aqueous phase delamination;
(3)异丙醇沉淀RNA;(3) isopropanol precipitation RNA;
(4)漂洗RNA沉淀;(4) Rinse the RNA precipitation;
(5)RNase-free H2O重新溶解RNA沉淀。(5) RNase-free H 2 O redissolves the RNA pellet.
3、RNA样品的质量分析3. Quality analysis of RNA samples
利用Nanodrop2000对所提RNA的浓度和纯度进行检测,琼脂糖凝胶电泳检测RNA完整性,Agilent2100测定RIN值。单次建库要求RNA总量5μg,浓度≥200ng/μL,OD260/280介于1.8~2.2之间。The concentration and purity of the extracted RNA were detected by Nanodrop2000, the RNA integrity was detected by agarose gel electrophoresis, and the RIN value was determined by Agilent2100. A single library construction requires a total amount of RNA of 5 μg, a concentration ≥ 200 ng/μL, and an OD260/280 between 1.8 and 2.2.
5、片段化RNA5. Fragmented RNA
Illumina平台是针对短序列片段进行测序,mRNA平均长度可能达几kb,因此需要对其进行随机打断。利用金属离子,可以将RNA随机断裂成200bp左右的小片段。The Illumina platform is for sequencing short sequence fragments, and the average length of mRNA may reach several kb, so it needs to be randomly interrupted. Using metal ions, RNA can be randomly broken into small fragments of about 200bp.
6、反转合成cDNA6. Inversion synthesis of cDNA
在逆转录酶的作用下,利用随机引物,以mRNA为模板反转合成一链cDNA,进行二链合成时,dNTPs试剂中用dUTP代替dTTP,使cDNA第二链中碱基包含A/U/C/G。Under the action of reverse transcriptase, random primers are used to reversely synthesize one-strand cDNA using mRNA as a template. When performing second-strand synthesis, dUTP is used instead of dTTP in the dNTPs reagent, so that the bases in the second strand of cDNA contain A/U/ C/G.
7、连接adaptor7. Connect the adapter
双链的cDNA结构为粘性末端,加入End Repair Mix将其补成平末端,随后在3’末端加上一个A碱基,用于连接Y字形的接头。The double-stranded cDNA structure is a cohesive end. Add End Repair Mix to make it a blunt end, and then add an A base at the 3' end to connect the Y-shaped adapter.
8、UNG酶消化cDNA二链8. UNG enzyme digests the second strand of cDNA
在PCR扩增前,用UNG酶将cDNA第二链消化,从而使文库中仅包含cDNA第一链。Before PCR amplification, the second strand of cDNA was digested with UNG enzyme, so that only the first strand of cDNA was included in the library.
9、Illumina x-ten上机测序9. Illumina x-ten on-machine sequencing
Illumina x-ten测序平台,进行2*150bp测序。Illumina x-ten sequencing platform for 2*150bp sequencing.
10、生物信息学分析10. Bioinformatics analysis
测序数据获得以后的rawdata分析过程如下所示:The rawdata analysis process after the sequencing data is obtained is as follows:
(1)用cutadapt对reads的5’和3’段进行trim,trim掉质量<20的碱基,并且删掉N大于10%的reads;(1) Use cutadapt to trim the 5' and 3' segments of the reads, trim the bases with a quality <20, and delete the reads with N greater than 10%;
(2)tophat比对到参考基因组上。所用的参考基因组版本为GRCh38.p7,fasta和gff文件下载自NCBI;(2) tophat is compared to the reference genome. The reference genome version used is GRCh38.p7, and the fasta and gff files are downloaded from NCBI;
(3)cuffquant定量mRNA的表达量并标准化输出;(3) cuffquant quantifies the expression level of mRNA and normalizes the output;
(4)在R环境下用DEGseq包比较对照组跟疾病组mRNA的表达差异。显著差异mRNA筛选条件:p-value<0.05。(4) Use the DEGseq package in the R environment to compare the mRNA expression differences between the control group and the disease group. Significantly different mRNA screening conditions: p-value<0.05.
11、结果11. Results
RNA-seq结果显示(如图2所示),与正常绝经女性相比,绝经后妇女原发性骨质疏松症患者血液中DHRS12基因的mRNA水平显著下降,差异具有统计学意义(P<0.05)。The results of RNA-seq showed (as shown in Figure 2) that compared with normal postmenopausal women, the mRNA level of DHRS12 gene in the blood of postmenopausal women with primary osteoporosis decreased significantly, and the difference was statistically significant (P<0.05 ).
实施例2 QPCR实验验证绝经后妇女原发性骨质疏松症患者和正常绝经女性中差异表达的基因Example 2 QPCR experiment verification of genes differentially expressed in postmenopausal women with primary osteoporosis and normal menopausal women
1、研究对象:1. Research object:
选择绝经后妇女原发性骨质疏松症患者30例,正常绝经女性30例,年龄在65-82岁之间。Select 30 postmenopausal women with primary osteoporosis and 30 normal postmenopausal women, aged 65-82 years.
绝经后妇女原发性骨质疏松症患者的纳入标准:绝经超过12个月的汉族绝经后妇女,患者均知情同意;Inclusion criteria for postmenopausal women with primary osteoporosis: Han postmenopausal women who have menopause for more than 12 months, and all patients have informed consent;
绝经后妇女原发性骨质疏松症患者的排除标准包括①既往接受过抗骨吸收药物(包括降钙素、双磷酸盐、雌激素等)或促骨形成药物(如甲状旁腺素等)治疗者(单纯使用钙剂和/或维生素D者除外);②长期服用糖皮质激素者;③合并有恶性肿瘤、骨转移肿瘤和其他内分泌、骨代谢病史(如类风湿性关节炎、甲亢、肾上腺疾病等)者;④脊柱或髋部等部位新鲜骨折或髋关节手术置换者;⑤严重肝肾疾病、长期卧床≧3个月者;⑥精神障碍、认知障碍。Exclusion criteria for patients with primary osteoporosis in postmenopausal women include ① Previously received anti-resorptive drugs (including calcitonin, bisphosphonates, estrogen, etc.) or bone-promoting drugs (such as parathyroid hormone, etc.) Treatment (except for those who simply use calcium and/or vitamin D); ② long-term use of glucocorticoids; ③ combined with malignant tumors, bone metastases, and other endocrine and bone metabolism history (such as rheumatoid arthritis, hyperthyroidism, Adrenal gland disease, etc.); ④fresh fractures of the spine or hip or hip joint replacement; ⑤severe liver and kidney disease, long-term bed rest ≥ 3 months; ⑥mental disorders, cognitive impairments.
2、血液总RNA提取2. Total RNA extraction from blood
使用博凌科为TRIpure LS Reagent血液(血液样本)RNA抽提试剂进行血液总RNA的提取。The blood total RNA was extracted using Bolinko TRIpure LS Reagent blood (blood sample) RNA extraction reagent.
基本步骤:The basic steps:
(1)按照3:1的体积比例加入TRIpure LS reagent和血液振荡混匀;(1) Add TRIpure LS reagent and blood in a volume ratio of 3:1 and mix well;
(2)加入氯仿帮助有机相和水相分层;(2) adding chloroform to help the organic phase and the aqueous phase delamination;
(3)异丙醇沉淀RNA;(3) isopropanol precipitation RNA;
(4)漂洗RNA沉淀;(4) Rinse the RNA precipitation;
(5)RNase-free H2O重新溶解RNA沉淀。(5) RNase-free H 2 O redissolves the RNA pellet.
3、逆转录3. Reverse transcription
用逆转录缓冲液对lμg总RNA进行逆转录合成cDNA。采用25μl反应体系,每个样品取1μg总RNA作为模板RNA,在PCR管中分别加入以下组分:DEPC水,5×逆转录缓冲液,10mmol/L dNTP,0.1mmol/l DTT,30μmmol/l Oligo dT,200U/μl M-MLV,模板RNA。42℃孵育1h,72℃10min,短暂离心。1 μg of total RNA was reverse-transcribed to synthesize cDNA using reverse transcription buffer. Use 25μl reaction system, take 1μg total RNA for each sample as template RNA, add the following components to the PCR tube respectively: DEPC water, 5× reverse transcription buffer, 10mmol/L dNTP, 0.1mmol/l DTT, 30μmmol/l Oligo dT, 200 U/μl M-MLV, template RNA. Incubate at 42°C for 1h, then centrifuge briefly at 72°C for 10min.
4、QPCR4. QPCR
采用25μl反应体系,每个样本设置3个平行管,所有扩增反应均重复三次以上以保证结果的可靠性。A 25 μl reaction system was used, three parallel tubes were set up for each sample, and all amplification reactions were repeated more than three times to ensure the reliability of the results.
配制以下反应体系:SYBR Green聚合酶链式反应体系 12.5μl,正向引物(5μM/μl)1μl,反向引物(5μM/μl)1μl,模板cDNA 2.0μl,无酶水8.5μl。Prepare the following reaction system: SYBR Green polymerase chain reaction system 12.5 μl, forward primer (5 μM/μl) 1 μl, reverse primer (5 μM/μl) 1 μl, template cDNA 2.0 μl, enzyme-free water 8.5 μl.
引物序列如下:The primer sequences are as follows:
扩增DHRS12基因的正向引物序列为 5’-CAGTCCGAAAGAACACCAT-3’(SEQ IDNO.3),反向引物序列为 5’-CTCCGTCAGAACCACTTG-3’(SEQ ID NO.4);The forward primer sequence for amplifying the DHRS12 gene is 5'-CAGTCCGAAAGAACACCAT-3' (SEQ ID NO.3), and the reverse primer sequence is 5'-CTCCGTCAGAACCACTTG-3' (SEQ ID NO.4);
扩增GAPDH基因的正向引物序列为5’-TTTAACTCTGGTAAAGTGGATAT-3’(SEQ IDNO.5),反向引物序列为5’-GGTGGAATCATATTGGAACA-3’(SEQ ID NO.6)。The sequence of the forward primer for amplifying the GAPDH gene is 5'-TTTAACTCTGGTAAAGTGGATAT-3' (SEQ ID NO.5), and the sequence of the reverse primer is 5'-GGTGGAATCATATTGGAACA-3' (SEQ ID NO.6).
扩增程序:95℃5min,(95℃10s,60℃60s)*45个循环。以SYBRAmplification program: 95°C for 5min, (95°C for 10s, 60°C for 60s)*45 cycles. to SYBR
Green作为荧光标记物,在Light Cycler荧光实时定量PCR仪上进行PCR反应,通过融解曲线分析和电泳确定目的条带,ΔΔCT法进行相对定量。Green was used as a fluorescent marker, and the PCR reaction was carried out on a Light Cycler fluorescence real-time quantitative PCR instrument. The target band was determined by melting curve analysis and electrophoresis, and the relative quantification was carried out by the ΔΔCT method.
5、结果5. Results
结果如图1所示,与正常绝经女性相比,绝经后妇女原发性骨质疏松症患者血液中DHRS12基因的mRNA水平显著下降,差异具有统计学意义(P<0.05),结果同RNA-seq实验。The results are shown in Figure 1. Compared with normal postmenopausal women, the mRNA level of DHRS12 gene in the blood of postmenopausal women with primary osteoporosis decreased significantly, and the difference was statistically significant (P<0.05). The results were the same as those of RNA- seq experiment.
上述实施例的说明只是用于理解本发明的方法及其核心思想。应当指出,对于本领域的普通技术人员来说,在不脱离本发明原理的前提下,还可以对本发明进行若干改进和修饰,这些改进和修饰也将落入本发明权利要求的保护范围内。The description of the above embodiments is only for understanding the method and core idea of the present invention. It should be pointed out that for those skilled in the art, without departing from the principles of the present invention, some improvements and modifications can be made to the present invention, and these improvements and modifications will also fall within the protection scope of the claims of the present invention.
SEQUENCE LISTINGSEQUENCE LISTING
<110> 首都医科大学附属北京友谊医院<110> Beijing Friendship Hospital Affiliated to Capital Medical University
<120> 绝经后妇女原发性骨质疏松症的诊断工具<120> Diagnostic tools for primary osteoporosis in postmenopausal women
<160> 6<160> 6
<170> PatentIn version 3.5<170> PatentIn version 3.5
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Ser Ser Asn Asp Leu Glu Ala Cys Trp Ser Ser Gly Gly Gly Glu GlnSer Ser Asn Asp Leu Glu Ala Cys Trp Ser Ser Gly Gly Gly Glu Gln
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Cited By (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN111394448A (en) * | 2020-02-24 | 2020-07-10 | 苏州大学附属第二医院 | Application of Progranulin as a Biomarker in the Preparation of Products for Diagnosing Postmenopausal Osteoporosis |
CN115236211A (en) * | 2021-04-22 | 2022-10-25 | 中国医科大学附属第一医院 | A method and application of liquid chromatography tandem mass spectrometry for detecting the level of melatonin in blood |
Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN105087821A (en) * | 2015-09-28 | 2015-11-25 | 北京泱深生物信息技术有限公司 | Molecular marker for diagnosis and treatment of osteoporosis |
CN105112552A (en) * | 2015-09-28 | 2015-12-02 | 北京泱深生物信息技术有限公司 | Application of IFT52 genes on diagnosis of osteoporosis |
CN105695622A (en) * | 2016-04-27 | 2016-06-22 | 固安博健生物技术有限公司 | Molecular marker of PILRA gene for diagnosing osteoporosis |
-
2017
- 2017-06-16 CN CN201710459610.1A patent/CN107164507A/en active Pending
Patent Citations (3)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN105087821A (en) * | 2015-09-28 | 2015-11-25 | 北京泱深生物信息技术有限公司 | Molecular marker for diagnosis and treatment of osteoporosis |
CN105112552A (en) * | 2015-09-28 | 2015-12-02 | 北京泱深生物信息技术有限公司 | Application of IFT52 genes on diagnosis of osteoporosis |
CN105695622A (en) * | 2016-04-27 | 2016-06-22 | 固安博健生物技术有限公司 | Molecular marker of PILRA gene for diagnosing osteoporosis |
Non-Patent Citations (2)
Title |
---|
HYUN JIN PARK等: "Naringenin causes ASK1-induced apoptosis via reactive oxygen species in human pancreatic cancer cells", 《FOOD AND CHEMICAL TOXICOLOGY》 * |
PERSSON B等: "Homo sapiens dehydrogenase/reductase (SDR family) member 12 (DHRS12), transcript variant 1, mRNA", 《GENBANK DATABASE》 * |
Cited By (2)
Publication number | Priority date | Publication date | Assignee | Title |
---|---|---|---|---|
CN111394448A (en) * | 2020-02-24 | 2020-07-10 | 苏州大学附属第二医院 | Application of Progranulin as a Biomarker in the Preparation of Products for Diagnosing Postmenopausal Osteoporosis |
CN115236211A (en) * | 2021-04-22 | 2022-10-25 | 中国医科大学附属第一医院 | A method and application of liquid chromatography tandem mass spectrometry for detecting the level of melatonin in blood |
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