CN107129990B - Application of Inhibition or Mutation of TFIIAγ Gene in Crop Disease Resistance - Google Patents
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Abstract
本发明属于植物基因工程领域,具体涉及抑制或突变TFIIAγ基因在农作物抗病中的应用。所述基因包含水稻OsTFIIAγ5基因、辣椒CaTFIIAγ基因h和番茄SlTFIIAγ基因,本发明涉及植物和携带转录激活类效应子(TALE)基因的细菌性病原菌互作中功能验证。TFIIAγ基因是植物抵抗携带TALE病原菌反应中的负调控因子。抑制OsTFIIAγ5基因表达或突变该基因,可使水稻对白叶枯病菌和细菌性条斑病菌具有广谱抗性。但突变OsTFIIAγ5基因不影响水稻的产量性状。在番茄中抑制SlTFIIAγ基因表达可提高番茄对细菌性疮痂病的抗性。在辣椒中抑制CaTFIIAγ基因表达可提高辣椒对斑点病的抗性。The invention belongs to the field of plant genetic engineering, in particular to the application of inhibiting or mutating TFIIAγ gene in crop disease resistance. The genes comprise rice OsTFIIAγ5 gene, pepper CaTFIIAγ gene h and tomato SlTFIIAγ gene, and the invention relates to functional verification in the interaction between plants and bacterial pathogens carrying transcriptional activator-like effector (TALE) genes. TFIIAγ gene is a negative regulator in plant resistance to TALE-carrying pathogens. Inhibiting the expression of OsTFIIAγ5 gene or mutating this gene can make rice have broad-spectrum resistance to bacterial blight and bacterial leaf spot. However, the mutant OsTFIIAγ5 gene did not affect the yield traits of rice. Inhibition of SlTFIIAγ gene expression in tomato increases tomato resistance to bacterial scab. Inhibition of CaTFIAγ gene expression in pepper can improve the resistance of pepper to spot disease.
Description
技术领域technical field
本发明属于植物基因工程技术领域。具体涉及抑制或突变TFIIAγ基因在农作物抗病中的应用。所述的应用涉及植物的转录因子IIAγ亚单位(transcription factor IIAgamma subunit,TFIIAγ)基因在抗细菌性病害中的应用。TFIIAγ基因是抗病反应中的负调控因子。抑制TFIIAγ基因表达的植株对携带转录激活类效应子(transcriptionactivator-like effector,TALE)病原菌的能力显著提高。The invention belongs to the technical field of plant genetic engineering. Specifically, it relates to the application of inhibiting or mutating TFIIAγ gene in crop disease resistance. The application relates to the application of plant transcription factor IIAgamma subunit (TFIIAγ) gene in bacterial disease resistance. TFIIAγ gene is a negative regulator in disease resistance response. Plants that inhibited the expression of TFIIAγ gene significantly improved their ability to carry transcription activator-like effector (TALE) pathogens.
背景技术Background technique
黄单胞菌属(Xanthomonas)是原核生物假单胞菌科的革兰氏阴性菌属,所有的黄单胞菌属的细菌都是植物病原菌,它包括很多致病变种,是世界性的病原菌,可以危害至少27个植物属的超过400多种类型植物(Ryan et al.2011)。每年给各种植物安全生产带来严重的危害,不仅危害重要粮食作物,还严重危害重要经济作物和蔬菜,比如黄单胞菌属的水稻致病变种白叶枯病菌(Xanthomonas oryzae pv.oryzae,Xoo)和细菌性条斑病菌(Xanthomonas oryzae pv.Oryzicola,Xoc)分别引起水稻的白叶枯病和细菌性条斑病;野油菜黄单胞菌(Xanthomonas campestris pv.vesicatoria,Xcv)可以引起番茄和辣椒的番茄细菌性疮痂病和辣椒斑点病;柑橘溃疡病菌(Xanthomonas axonopodis pv.citri,Xac)可以引起柑橘溃疡病;棉花角斑病菌(Xanthomonas campestris pv.malvacearum,Xcm)可以引起棉花角斑病;十字花科蔬菜黑腐病菌(Xanthomonas campestris pv.Armoraciae,Xca)可以引起十字花科蔬菜黑腐病;木薯细菌性萎蔫病菌(Xanthomonas axonopodispv.manihotis,Xam)可以引起木薯细菌性萎蔫病;香蕉细菌性萎蔫病菌(Xanthomonascampestris pv.Musacearum)可以引起香蕉细菌性萎蔫病;甘蔗流胶病菌(Xanthomonascampestris pv.vasculorum)可以引起甘蔗流胶病;大豆斑疹病菌(Xanthomonasaxonopodis pv.Glycines)可以引起大豆斑疹病(Schornack et al.2006;Ryan etal.2011;Bart et al.2012)。Xanthomonas (Xanthomonas) is a gram-negative genus of prokaryotic Pseudomonas family, all Xanthomonas bacteria are plant pathogens, it includes many pathogenic species, is a worldwide pathogenic bacteria , can harm more than 400 types of plants in at least 27 plant genera (Ryan et al. 2011). It brings serious harm to the safe production of various plants every year, not only harming important food crops, but also seriously harming important economic crops and vegetables, such as Xanthomonas oryzae pv. Xoo) and bacterial leaf spot (Xanthomonas oryzae pv. Oryzicola, Xoc) cause bacterial blight and bacterial leaf spot of rice, respectively; Xanthomonas campestris pv. vesicatoria (Xcv) can cause tomato Bacterial scab and pepper spot disease of tomato and pepper; citrus canker (Xanthomonas axonopodis pv.citri, Xac) can cause citrus canker; cotton horn spot (Xanthomonas campestris pv. malvacearum, Xcm) can cause cotton canker ; Cruciferous vegetable black rot fungus (Xanthomonas campestris pv.Armoraciae, Xca) can cause black rot disease of cruciferous vegetables; Cassava bacterial wilt fungus (Xanthomonas axonopodispv.manihotis, Xam) can cause cassava bacterial wilt disease; Banana bacteria Xanthomonascampestris pv.Musacearum can cause bacterial wilt disease of banana; Xanthomonascampestris pv.vasculorum can cause sugarcane slippery disease; Xanthomonascampestris pv. Glycines can cause soybean spot disease (Schornack et al. 2006; Ryan et al. 2011; Bart et al. 2012).
黄单胞菌属危害植物主要是在侵染植物细胞后,通过III型分泌系统将自身的转录激活类效应子(transcription activator-like effector,TALE)分泌进入植物细胞核内。黄单胞杆菌属不同致病变种携带不同数目的TALE,这些TALE通常直接结合在目标基因的启动子区的特定区域,通过激活诱导宿主的目标基因的表达,来达到使宿主致病的目的(Scholze and Boch 2011)。Xanthomonas genus harms plants mainly by secreting its own transcription activator-like effector (TALE) into the nucleus of plant cells through the type III secretion system after infecting plant cells. Different pathogenic species of Xanthomonas carry different numbers of TALEs, and these TALEs are usually directly combined with a specific region of the promoter region of the target gene to achieve the purpose of making the host pathogenic by activating and inducing the expression of the target gene in the host ( Scholze and Boch 2011).
真核生物的mRNA在转录过程中,最具特征化的内核启动子单元是TATA框,其首先被基本转录因子TATA框结合蛋白所识别,然后其它基本转录因子像TFIIA(basaltranscription factor IIA)和TFIIB顺序与之结合,形成转录的前起始复合物。TFIIA和TATA框结合蛋白互作,使TATA框结合蛋白更加稳定结合在TATA框上,以启动基因转录成mRNA(Yudkovsky et al.2000)。During the transcription of eukaryotic mRNA, the most characterized core promoter unit is the TATA box, which is first recognized by the basic transcription factor TATA box-binding protein, and then other basic transcription factors such as TFIIA (basal transcription factor IIA) and TFIIB. The sequence binds to it to form the pre-initiation complex of transcription. TFIIA interacts with TATA box-binding proteins, making TATA box-binding proteins more stably bound to the TATA box to initiate gene transcription into mRNA (Yudkovsky et al. 2000).
真核生物依赖于转录酶II的转录都需要TFIIA。TFIIA由α、β、γ三个亚基组成,它们由两个基因编码;一个基因编码TFIIAαβ,另一个基因编码TFIIAγ(Li et al.1999)。来源于不同真核生物的TFIIAγ氨基酸序列高度相似。水稻中的一个TFIIAγ基因位于第5号染色体命名为OsTFIIAγ5,它编码的OsTFIIAγ5由106个氨基酸组成,当其第39位氨基酸由缬氨酸突变成谷氨酸后,即为xa5,由隐性抗白叶枯病主效基因xa5编码(Iyer and McCouch2004;Jiang et al.2006)。Transcriptase II-dependent transcription in eukaryotes requires TFIIA. TFIIA consists of three subunits, α, β, and γ, which are encoded by two genes; one gene encodes TFIIAαβ, and the other gene encodes TFIIAγ (Li et al. 1999). The amino acid sequences of TFIIAγ derived from different eukaryotes are highly similar. A TFIIAγ gene in rice is located on
目前,人们知道含转录激活类效应子的黄单胞菌属细菌侵染它们宿主植物后,会分泌TALE进入宿主细胞并结合在宿主目标感病基因的启动子的特定区域,激活宿主感病基因的表达,造成病害(Boch et al.2014)。但是这个过程是否需要其它蛋白参与,或者宿主的基本转录因子在此过程中如何发挥作用都不清楚。At present, it is known that Xanthomonas bacteria containing transcriptional activator-like effectors infect their host plants, secrete TALE into the host cells and bind to specific regions of the host's target disease-susceptibility gene promoter to activate the host's disease-susceptible gene expression, causing disease (Boch et al. 2014). But whether other proteins are involved in this process, or how the host's essential transcription factors play a role in this process, is unclear.
发明内容SUMMARY OF THE INVENTION
本发明的目的在于克服现有技术存在的缺陷,抑制或突变TFIIAγ基因在农作物抗病中的应用。本发明发现白叶枯病菌和细菌性条斑病菌的不同TALE可以与宿主水稻的OsTFIIAγ5结合,而与xa5结合减弱。携带隐性xa5基因的水稻不仅产生对白叶枯病的广谱抗性,同时也产生了对细菌性条斑病的广谱抗性。The purpose of the present invention is to overcome the defects existing in the prior art, and to inhibit or mutate the application of TFIIAγ gene in crop disease resistance. The present invention finds that the different TALEs of Bacterial blight and Bacterial leaf spot can bind to OsTFIIAγ5 of the host rice, but weaken the binding to xa5. Rice carrying the recessive xa5 gene not only developed broad-spectrum resistance to bacterial blight, but also developed broad-spectrum resistance to bacterial leaf spot.
进一步,本发明发现抑制水稻的OsTFIIAγ5基因的表达可以增强转基因水稻对白叶枯病菌和细菌性条斑病菌的广谱抗性;抑制辣椒的CaTFIIAγ基因的表达可以增强对辣椒斑点病的抗性;抑制番茄的SlTFIIAγ基因的表达可以增强对番茄细菌性疮痂病的抗性。Further, the present invention finds that inhibiting the expression of the OsTFIIAγ5 gene in rice can enhance the broad-spectrum resistance of transgenic rice to bacterial blight and bacterial leaf spot; inhibiting the expression of the CaTFIIAγ gene in pepper can enhance the resistance to pepper spot; The expression of SlTFIIAγ gene in tomato can enhance the resistance to tomato bacterial scab.
本发明涉及对不同植物的TFIIAγ基因的cDNA片段进行遗传操作鉴定其功能,该片段赋予水稻对白叶枯病菌和细菌性条斑病菌所引起的病害产生抗病反应,赋予辣椒对辣椒斑点病菌所引起的病害产生抗病反应,赋予番茄对番茄细菌性疮痂病菌所引起的病害产生抗病反应。分离的水稻、辣椒和番茄的TFIIAγ基因的蛋白质序列如序列表SEQ ID NO:5、SEQ ID NO:7和SEQ ID NO:9所示,或者基本上相当于SEQ ID NO:5、SEQ ID NO:7和SEQ IDNO:9所示所示的蛋白质序列。对它们序列进行分析表明它们是一类转录因子。抑制SEQ IDNO:4所示序列的表达可以增强水稻对白叶枯病菌和细菌性条斑病菌的抗性;抑制SEQ IDNO:6所示序列的表达可以增强辣椒对辣椒斑点病菌的抗性;抑制SEQ ID NO:8所示序列的表达可以增强番茄对番茄细菌性疮痂病菌的抗性,The invention relates to genetic manipulation of cDNA fragments of TFIIAγ genes of different plants to identify their functions. The fragments endow rice with disease resistance to diseases caused by bacterial blight and bacterial leaf spot, and endow peppers with resistance to diseases caused by pepper spot pathogens. The disease produced a disease resistance response, giving tomato a disease resistance response to the disease caused by the tomato bacterial scab fungus. The protein sequences of the isolated TFIIAγ genes of rice, pepper and tomato are shown in SEQ ID NO: 5, SEQ ID NO: 7 and SEQ ID NO: 9 in the sequence listing, or substantially equivalent to SEQ ID NO: 5, SEQ ID NO: : 7 and the protein sequence shown in SEQ ID NO: 9. Analysis of their sequences revealed that they are a class of transcription factors. Inhibiting the expression of the sequence shown in SEQ ID NO: 4 can enhance the resistance of rice to Bacterial blight and bacterial leaf spot; inhibiting the expression of the sequence shown in SEQ ID NO: 6 can enhance the resistance of pepper to Capsicum speckle; inhibiting SEQ ID NO: 6 The expression of the sequence shown in ID NO: 8 can enhance the resistance of tomato to Tomato bacterial scab,
在本发明的实施例部分,申请人阐述了对水稻、辣椒和番茄的遗传操作,功能验证和应用过程以及上述三个基因的特点。In the Examples section of the present invention, the applicant described the genetic manipulation, functional verification and application process on rice, pepper and tomato, and the characteristics of the above three genes.
附图说明Description of drawings
SEQ ID NO:1是本发明分离克隆的水稻OsTFIIAγ5基因的核苷酸序列,序列长度为6261bp。其中5′UTR区段是1-374位,长度是374bp;第一个外显子区段是375-503位,长度为129bp;第二个外显子区段是598-648位,长度为51bp;第三个外显子区段是5744-5884位,长度为141bp;3′UTR区段是5885-6261位,长度是377bp;第一个内含子区段是是504-597位,长度为94bp;第二个内含子区段是649-5743位,长度为5095bp。SEQ ID NO: 1 is the nucleotide sequence of the rice OsTFIIAγ5 gene isolated and cloned by the present invention, and the sequence length is 6261 bp. The 5'UTR segment is 1-374, and the length is 374bp; the first exon segment is 375-503, and the length is 129bp; the second exon segment is 598-648, and the length is 51bp; the third exon segment is 5744-5884, the length is 141bp; the 3' UTR segment is 5885-6261, the length is 377bp; the first intron segment is 504-597, The length is 94bp; the second intron segment is 649-5743 and 5095bp in length.
SEQ ID NO:2是本发明分离克隆的辣椒CaTFIIAγ基因的核苷酸序列,序列长度为5695bp。其中:第一个外显子区段是1-129位,长度为129bp;第二个外显子区段是2451-2501位,长度为51bp;第三个外显子区段是5555-5695位,长度为141bp;第一个内含子区段是130-2450位,长度为2321bp;第二个内含子区段是2502-5554位,长度为3053bp。SEQ ID NO: 2 is the nucleotide sequence of the pepper CaTFIIAγ gene isolated and cloned by the present invention, and the sequence length is 5695 bp. Among them: the first exon segment is 1-129, the length is 129bp; the second exon segment is 2451-2501, the length is 51bp; the third exon segment is 5555-5695 The first intron segment is 130-2450 bp and the length is 2321 bp; the second intron segment is 2502-5554 bp and the length is 3053 bp.
序列表SEQ ID NO:3是本发明分离克隆的番茄SlTFIIAγ基因的核苷酸序列,序列长度为5028bp。其中:第一个外显子区段是1-129位,长度为129bp;第二个外显子区段是2265-2315位,长度为51bp;第三个外显子区段是4888-5028位,长度为141bp;第一个内含子区段是130-2264位,长度为2135bp;第二个内含子区段是2316-4887位,长度为2572bp。Sequence Listing SEQ ID NO: 3 is the nucleotide sequence of the tomato SlTFIIAγ gene isolated and cloned in the present invention, and the sequence length is 5028 bp. Among them: the first exon segment is 1-129, the length is 129bp; the second exon segment is 2265-2315, the length is 51bp; the third exon segment is 4888-5028 The first intron segment is 130-2264 bp and the length is 2135 bp; the second intron segment is 2316-4887 bp and the length is 2572 bp.
序列表SEQ ID NO:4是拼接的水稻OsTFIIAγ5基因的编码序列(CDS)。Sequence Listing SEQ ID NO: 4 is the coding sequence (CDS) of the spliced rice OsTFIIAγ5 gene.
序列表SEQ ID NO:5是水稻OsTFIIAγ5基因的蛋白质序列。Sequence Listing SEQ ID NO: 5 is the protein sequence of the rice OsTFIIAγ5 gene.
序列表SEQ ID NO:5是拼接的辣椒CaTFIIAγ基因的编码序列(CDS)。Sequence Listing SEQ ID NO: 5 is the coding sequence (CDS) of the spliced pepper CaTFIAγ gene.
序列表SEQ ID NO:7是辣椒CaTFIIAγ基因的蛋白质序列。Sequence Listing SEQ ID NO: 7 is the protein sequence of the pepper CaTFIAγ gene.
序列表SEQ ID NO:8是拼接的番茄SlTFIIAγ基因的编码序列(CDS)。SEQUENCE LISTING SEQ ID NO: 8 is the coding sequence (CDS) of the spliced tomato SlTFIIAγ gene.
序列表SEQ ID NO:9是番茄SlTFIIAγ基因的蛋白质序列。Sequence Listing SEQ ID NO: 9 is the protein sequence of the tomato SlTFIIAγ gene.
图1.本发明分离克隆水稻、番茄、辣椒TFIIAγ基因以及验证TFIIAγ基因功能的流程图。Figure 1. The flow chart of the present invention to isolate and clone TFIIAγ gene from rice, tomato and pepper and to verify the function of TFIIAγ gene.
图2.水稻、番茄和辣椒中OsTFIIAγ5基因的结构。附图标记说明:黑色长方形示外显子,黑色横线示内含子,白色长方形示5′和3′非翻译区(untranslated region,UTR)。“ATG”和“TAA”分别是翻译起始密码和终止密码。数字示每一种结构的核苷酸数目。箭头示PCR扩增引物1F、1R、gF、gR、dsF和dsR的位置和方向。Figure 2. Structure of the OsTFIIAγ5 gene in rice, tomato and pepper. Description of reference numerals: black rectangles indicate exons, black horizontal lines indicate introns, and white rectangles indicate 5' and 3' untranslated regions (UTRs). "ATG" and "TAA" are translation initiation and termination codons, respectively. The numbers indicate the number of nucleotides in each structure. Arrows indicate the position and orientation of
图3.携带OsTFIIAγ5基因的遗传转化载体pDS1301的结构。它是在pDS1301载体的多克隆位点插入了OsTFIIAγ5基因的cDNA片段的反向重复序列。附图标记说明:RB和LB代表T-DNA右和左边界;Hpt代表潮霉素磷酸转移酶基因(筛选基因);35S代表花椰菜花叶病毒启动子;AdhI代表玉米乙醇脱氢酶基因内含子I;Waxy-a代表水稻Waxy基因内含子;OCS代表章鱼碱合成酸基因终止子;GUS代表β-葡萄糖苷酸酶基因(标记基因)。Figure 3. Structure of the genetic transformation vector pDS1301 carrying the OsTFIIAγ5 gene. It is an inverted repeat of the cDNA fragment of the OsTFIIAγ5 gene inserted into the multiple cloning site of the pDS1301 vector. Description of reference numerals: RB and LB represent T-DNA right and left borders; Hpt represents hygromycin phosphotransferase gene (screening gene); 35S represents cauliflower mosaic virus promoter; AdhI represents maize alcohol dehydrogenase gene inclusion Sub I; Waxy-a represents rice Waxy gene intron; OCS represents octopine synthesis acid gene terminator; GUS represents β-glucuronidase gene (marker gene).
图4.T0代遗传转化植株中的OsTFIIAγ5基因表达量和对白叶枯病菌株PXO99的反应。对照为水稻品种中花11(遗传转化的受体)。遗传转化植株中OsTFIIAγ5基因的表达量是相对于对照中花11中OsTFIIAγ5基因的表达量。Figure 4. OsTFIIAγ5 gene expression and response to bacterial blight strain PXO99 in T0 generation genetically transformed plants. The control was the rice variety Zhonghua 11 (the genetically transformed recipient). The expression level of OsTFIIAγ5 gene in genetically transformed plants is relative to the expression level of OsTFIIAγ5 gene in control Zhonghua 11.
图5.抑制表达OsTFIIAγ5基因的T1代遗传转化植株中的OsTFIIAγ5基因的表达量与表型共分离。对照为水稻品种中花11(遗传转化的受体)。遗传转化植株中OsTFIIAγ5基因的表达量是相对于对照中花11中OsTFIIAγ5基因的表达量。Figure 5. Co-segregation of OsTFIIAγ5 gene expression and phenotype in T1-generation genetically transformed plants suppressing OsTFIIAγ5 gene expression. The control was the rice variety Zhonghua 11 (the genetically transformed recipient). The expression level of OsTFIIAγ5 gene in genetically transformed plants is relative to the expression level of OsTFIIAγ5 gene in control Zhonghua 11.
图6.T1代遗传转化家系OsTFIIAγ5-RNAi1、OsTFIIAγ5RNAi-3和OsTFIIAγ5-RNAi7植株接种8种菲律宾白叶枯病菌生理小种、1种日本白叶枯病菌生理小种、1种韩国白叶枯病菌生理小种和4种中国白叶枯病菌生理小种两周后的表型。Fig. 6. Plants of T1 generation genetically transformed families OsTFIIAγ5-RNAi1, OsTFIIAγ5RNAi-3 and OsTFIIAγ5-RNAi7 were inoculated with 8 species of bacterial blight of the Philippines, 1 species of bacterial blight of Japan, and 1 species of bacterial blight of Korea Phenotypes of physiological races and four species of bacterial blight species after two weeks.
图7.T1代遗传转化家系OsTFIIAγ5-RNAi1、OsTFIIAγ5-RNAi3和OsTFIIAγ/5-RNAi7植株接种5种中国细菌性条斑病菌生理小种两周后的表型。Fig. 7. Phenotypes of the T1 generation genetically transformed lines OsTFIIAγ5-RNAi1, OsTFIIAγ5-RNAi3 and OsTFIIAγ/5-RNAi7 plants inoculated with 5 strains of Chinese bacterial leaf spot two weeks later.
图8.携带隐性xa5(编码xa5或突变OsTFIIAγ5的水稻品种和携带OsTFIIAγ5的水稻品种接种9种菲律宾白叶枯病菌生理小种、1种日本白叶枯病菌生理小种、1种韩国白叶枯病菌生理小种和4种中国白叶枯病菌生理小种两周后的表型。Figure 8. Rice cultivars carrying recessive xa5 (encoding xa5 or mutant OsTFIIAγ5 and rice cultivars carrying OsTFIIAγ5 were inoculated with 9 bacterial races of Philippine bacterial blight, 1 physiological race of Japanese bacterial blight, and 1 Korean white leaf Phenotypes of B. blight races and 4 species of B. solani after two weeks.
图9.携带隐性xa5(编码xa5或突变OsTFIIAγ5的水稻品种和携带OsTFIIAγ5的水稻品种和携带OsTFIIAγ5的水稻品种接种5种中国细菌性条斑病菌生理小种两周后的表型。Figure 9. Phenotypes of rice cultivars carrying recessive xa5 (encoding xa5 or mutant OsTFIIAγ5 and rice cultivars carrying OsTFIIAγ5 and rice cultivars carrying OsTFIIAγ5 two weeks after inoculation with 5 Chinese bacterial races.
图10.携带番茄SlTFIIAγ基因的转化载体pTRV2-SlTFIIAγ的结构。它是在pTRV2载体的多克隆位点插入了番茄SlTFIIAγ基因的cDNA片段的一部分序列。附图标记说明:RB和LB代表T-DNA右和左边界;35S代表花椰菜花叶病毒启动子;CP代表烟草脆裂病毒衣壳蛋白;Rz代表自剪切核酶;Waxy-a代表水稻Waxy基因内含子;NOSt代表胭脂碱合成酶基因终止子。Figure 10. Structure of the transformation vector pTRV2-SlTFIIAγ carrying the tomato SlTFIIAγ gene. It is a part of the sequence of the cDNA fragment of the tomato SlTFIIAγ gene inserted into the multiple cloning site of the pTRV2 vector. Description of reference numerals: RB and LB represent T-DNA right and left borders; 35S represents cauliflower mosaic virus promoter; CP represents tobacco chipping virus capsid protein; Rz represents self-cleaving ribozyme; Waxy-a represents rice Waxy Gene intron; NOSt stands for nopaline synthase gene terminator.
图11.利用烟草脆裂病毒诱导的基因沉默技术抑制番茄的SlTFIIAγ基因表达量和对番茄细菌性疮痂病23-1的反应。对照为利用烟草脆裂病毒诱导的基因沉默技术在番茄中抑制绿色荧光蛋白GFP基因。图11中的A图是抑制番茄的SlTFIIAγ基因表达可以增强番茄对番茄细菌性疮痂病23-1的抗病性;图11中的B图是利用烟草脆裂病毒诱导的基因沉默技术抑制番茄的SlTFIIAγ基因表达量检测结果;图11中的C图是利用烟草脆裂病毒诱导的基因沉默技术抑制番茄的SlTFIIAγ基因后接种番茄细菌性疮痂病23-1后第0天和第3天叶片中细菌生长数量。Figure 11. Inhibition of SlTFIIAγ gene expression in tomato and response to tomato bacterial scab 23-1 by gene silencing technology induced by tobacco rattle virus. The control was the suppression of the green fluorescent protein GFP gene in tomato by using the gene silencing technology induced by tobacco chipping virus. Panel A in Figure 11 shows that inhibiting the expression of SlTFIIAγ gene in tomato can enhance the resistance of tomato to tomato bacterial scab 23-1; Panel B in Figure 11 is the use of tobacco chip virus-induced gene silencing technology to inhibit tomato SlTFIIAγ gene expression detection results; Figure C in Figure 11 shows the bacteria in the leaves on the 0th and 3rd day after inoculation of tomato bacterial scab 23-1 after suppressing the SlTFIIAγ gene of tomato by the gene silencing technology induced by tobacco crisp virus number of growths.
图12.携带辣椒CaTFIIAγ基因的转化载体pTRV2-CaTFIIAγ的结构。它是在pTRV2载体的多克隆位点插入了辣椒CaTFIIAγ基因的cDNA片段的一部分序列。RB和LB代表T-DNA右和左边界;35S代表花椰菜花叶病毒启动子;CP代表烟草脆裂病毒衣壳蛋白;Rz代表自剪切核酶;Waxy-a代表水稻Waxy基因内含子;NOSt代表胭脂碱合成酶基因终止子。Figure 12. Structure of the transformation vector pTRV2-CaTFIIAγ carrying the pepper CaTFIAγ gene. It is a part of the sequence of the cDNA fragment of the pepper CaTFIIAγ gene inserted into the multiple cloning site of the pTRV2 vector. RB and LB represent the right and left borders of T-DNA; 35S represents the cauliflower mosaic virus promoter; CP represents the capsid protein of tobacco Rattle virus; Rz represents the self-cleaving ribozyme; Waxy-a represents the rice Waxy gene intron; NOSt stands for nopaline synthase gene terminator.
图13.利用烟草脆裂病毒诱导的基因沉默技术抑制辣椒的CaTFIIAγ基因表达量和对辣椒斑点病23-1的反应。对照为利用烟草脆裂病毒诱导的基因沉默技术在辣椒中抑制绿色荧光蛋白GFP基因。图13中的A图是抑制辣椒的CaTFIIAγ基因表达可以增强辣椒对辣椒斑点病23-1的抗病性;图13中的B图是利用烟草脆裂病毒诱导的基因沉默技术抑制辣椒的CaTFIIAγ基因表达量检测结果;图13中的C图是利用烟草脆裂病毒诱导的基因沉默技术抑制辣椒的CaTFIIAγ基因后接种辣椒斑点病23-1后第0天和第3天叶片中细菌生长数量。Fig. 13. Inhibition of CaTFIIAγ gene expression in pepper and response to pepper spot disease 23-1 by tobacco rattle virus-induced gene silencing technology. The control is the suppression of the green fluorescent protein GFP gene in pepper by using the gene silencing technology induced by tobacco crisp virus. Panel A in Figure 13 shows that inhibiting the expression of CaTFIIAγ gene in pepper can enhance the resistance of pepper to pepper spot disease 23-1; Panel B in Figure 13 is the inhibition of CaTFIIAγ gene in pepper by gene silencing technology induced by Tobacco Rattle virus Expression detection results; panel C in Figure 13 is the number of bacterial growth in leaves on
具体实施方式Detailed ways
以下实施例中进一步定义本发明,图1描述了分离克隆水稻OsTFIIAγ5基因以及验证水稻OsTFIIAγ5基因功能的流程,分离番茄SlTFIIAγ基因和辣椒CaTFIIAγ基因以及验证功能的流程。根据以上的描述和下面的实施例,本领域技术人员可以确定本发明的基本特征,并且在不偏离本发明精神和范围的情况下,可以对本发明做出各种改变和修改,以使其适用各种用途和条件。The present invention is further defined in the following examples. Figure 1 describes the process of isolating and cloning rice OsTFIIAγ5 gene and verifying the function of rice OsTFIIAγ5 gene, and the process of isolating tomato SlTFIIAγ gene and pepper CaTFIIAγ gene and verifying the function. From the above description and the following examples, those skilled in the art can ascertain the essential characteristics of the present invention, and without departing from the spirit and scope of the invention, can make various changes and modifications of the present invention to make it applicable Various uses and conditions.
实施例1:TFIIAγ基因的序列和结构分析Example 1: Sequence and structural analysis of the TFIIAγ gene
1.TFIIAγ基因结构的预测1. Prediction of TFIIAγ gene structure
申请人用白叶枯病菌PXO99的一个TALE基因pthXo1(GenBank注册号:ACD58243)的一段DNA序列(2944bp~3345bp)作为诱饵蛋白筛选水稻品种中花11的cDNA文库(Yuan等,2010),筛选到一条cDNA序列,用BLAST方法(Altschul等1997)检索核苷酸数据库GenBank(http://www.ncbi.nlm.nih.gov),发现该cDNA序列与来自水稻品种日本晴的一条位于水稻5号染色体上的序列高度同源。在水稻基因组数据库TIGR(http://rice.plantbiology.msu.edu/)中,这段水稻序列被注释为一个基因,其编号是LOC_Os05g01710,即本发明涉及的基因OsTFIIAγ5。The applicant used a DNA sequence (2944bp~3345bp) of a TALE gene pthXo1 (GenBank accession number: ACD58243) of bacterial blight PXO99 as a bait protein to screen the cDNA library of rice variety Zhonghua 11 (Yuan et al., 2010), and screened the A cDNA sequence was searched in the nucleotide database GenBank (http://www.ncbi.nlm.nih.gov) by the BLAST method (Altschul et al. 1997), and it was found that the cDNA sequence was related to a cDNA sequence from the rice variety Nipponbare located on
2.从水稻品种中花11中分离克隆OsTFIIAγ5基因2. Isolation and cloning of OsTFIIAγ5 gene from rice variety Zhonghua 11
水稻中花11是科学研究中常用的一个水稻品种(Cao等,2007)。申请人根据OsTFIIAγ5基因在粳稻日本晴基因组中的位置和结构(水稻基因组数据库TIGR),以OsTFIIAγ5基因两侧的基因组序列为模板,设计了两条PCR引物TFIIAγgF(5′-GGCGTAAAATAAAGAGAAATCTGG-3′)和TFIIAγgR(5′-TAATGTAAAGGTACCATTAACATAGG-3′),从中花11中扩增包含OsTFIIAγ5基因、全长6261bp的DNA片段。利用美国Applied Biosystems公司的测序试剂盒,以双脱氧核苷酸末端终止法(美国Applied Biosystems公司)分别从PCR扩增片段两端测序。序列拼接后得到一长6261bp的DNA序列,它包括完整的OsTFIIAγ5基因序列。Rice Zhonghua 11 is a rice variety commonly used in scientific research (Cao et al., 2007). The applicant designed two PCR primers, TFIIAγgF (5′-GGCGTAAAATAAAGAGAAATCTGG-3′) and TFIIAγgR, according to the position and structure of the OsTFIIAγ5 gene in the japonica rice Nipponbare genome (rice genome database TIGR) and the genome sequences on both sides of the OsTFIIAγ5 gene as templates. (5'-TAATGTAAAGGTACCATTACATAGG-3'), a DNA fragment of 6261 bp in full length was amplified from Zhonghua 11 containing the OsTFIIAγ5 gene. Both ends of the PCR amplified fragments were sequenced by the dideoxynucleotide end-termination method (Applied Biosystems, USA) using a sequencing kit from Applied Biosystems, USA. A DNA sequence with a length of 6261 bp was obtained after the sequence was assembled, which included the complete OsTFIIAγ5 gene sequence.
3.OsTFIIAγ5基因结构分析3. Analysis of OsTFIIAγ5 gene structure
为了获得OsTFIIAγ5基因全长cDNA序列,申请人提取水稻品种中花11的总RNA(Zhou等2002)。取1~5μg总RNA用DNaseI(美国Invitrogen公司)处理15分钟以去除基因组DNA污染,然后参照Zhou等(2002)的方法,使用oligo(dT)15寡聚引物和M-MLV反转录酶(美国Promega公司)进行反转录成cDNA。然后利用PCR引物TFIIAγcDNAF(5′-CCGGAATTCATGGCCACCTTCGAGCTC-3′)和TFIIAγcDNAR(5′-CGCGGATCCTTATTGGCTGAGTAGTTTG-3′),以总cDNA为模板,扩增出OsTFIIAγ5基因的全长cDNA。然后将PCR产物与T-A克隆载体pGEM-T(美国Promega公司)连接,将连接好的载体电转化(电转化仪为eppendorf公司产品,本实施例所用电压为1800V,具体操作参考该仪器的使用说明书)进入大肠杆菌菌株DH10B(Sun等,2004),通过酶切筛选阳性克隆。对阳性克隆进行测序,获得OsTFIIAγ5基因的cDNA序列(见SEQ ID NO:1)。In order to obtain the full-length cDNA sequence of the OsTFIIAγ5 gene, the applicant extracted the total RNA of Hua 11 in the rice variety (Zhou et al. 2002). Take 1-5 μg total RNA and treat it with DNaseI (Invitrogen, USA) for 15 minutes to remove genomic DNA contamination, and then refer to the method of Zhou et al. Promega Corporation, USA) was reverse transcribed into cDNA. Then, using PCR primers TFIIAγcDNAF (5′-CCGGAATTCATGGCCACCTTCGAGCTC-3′) and TFIIAγcDNAR (5′-CGCGGATCCTTATTGGCTGAGTAGTTTG-3′), the full-length cDNA of OsTFIIAγ5 gene was amplified with the total cDNA as a template. Then the PCR product is connected with the TA cloning vector pGEM-T (Promega, USA), and the connected vector is electro-transformed (the electro-transformer is a product of eppendorf company, the voltage used in this example is 1800V, and the specific operation refers to the instruction manual of the instrument ) into E. coli strain DH10B (Sun et al., 2004), and positive clones were screened by enzyme digestion. The positive clones were sequenced to obtain the cDNA sequence of the OsTFIIAγ5 gene (see SEQ ID NO: 1).
比较分析OsTFIIAγ5基因的基因组序列和cDNA序列,确定OsTFIIAγ5基因由6261个核苷酸组成(见SEQ ID NO:1所示),包含三个外显子,两个内含子(见图2)。第一个外显子由129个核苷酸组成(位于序列表SEQ ID NO:1的375-503位),5’UTR(位于序列表SEQ IDNO:1的1-374位);第一个内含子由94个核苷酸组成(位于序列表SEQ ID NO:1的504-597位);第二个外显子由51个核苷酸组成(位于序列表SEQ ID NO:1的598-648位);第二个内含子由5095个核苷酸组成(位于序列表SEQ ID NO:1的649-5743位);第三个外显子由141个核苷酸组成(位于序列表SEQ ID NO:1的5744-5884位,3’UTR位于序列表SEQ ID NO:1的5885-6261位,由377个核苷酸组成。Comparative analysis of the genome sequence and cDNA sequence of the OsTFIIAγ5 gene showed that the OsTFIIAγ5 gene was composed of 6261 nucleotides (see SEQ ID NO: 1), including three exons and two introns (see Figure 2). The first exon consists of 129 nucleotides (located at positions 375-503 of SEQ ID NO: 1 in the sequence listing), 5'UTR (located at positions 1-374 of SEQ ID NO: 1 in the sequence listing); the first The intron consists of 94 nucleotides (located at positions 504-597 of SEQ ID NO: 1 of the sequence listing); the second exon consists of 51 nucleotides (located at 598 of SEQ ID NO: 1 of the sequence listing). -648); the second intron consists of 5095 nucleotides (located at positions 649-5743 of SEQ ID NO: 1 of the sequence listing); the third exon consists of 141 nucleotides (located in the sequence Listed at positions 5744-5884 of SEQ ID NO: 1, the 3'UTR is located at positions 5885-6261 of SEQ ID NO: 1 in the sequence listing, and consists of 377 nucleotides.
4.OsTFIIAγ5基因编码产物分析4. Analysis of the encoding product of OsTFIIAγ5 gene
OsTFIIAγ5基因的编码区由321个核苷酸组成,编码一个长度为106个氨基酸的蛋白质。该蛋白质属于转录因子。The coding region of OsTFIIAγ5 gene consists of 321 nucleotides and encodes a protein with a length of 106 amino acids. This protein is a transcription factor.
5.从番茄中分离克隆SlTFIIAγ基因以及基因结构分析5. Isolation and cloning of SlTFIIAγ gene from tomato and analysis of gene structure
申请人根据水稻OsTFIIAγ5基因在国际公共核苷酸数据库检索番茄基因序列,设计了两条PCR引物SlTFIIAγF(5′-CGCGGATCCATGGCGACTTTTGAGCTATAC-3′)和SlTFIIAγR(5′-CCGCTCGAGTCACTGTGTGAGCAGCTTTGAG-3′),从番茄(例如番茄品种Ailsa Craig,但不限于该品种))的总RNA反转录得到的cDNA中扩增包含番茄SlTFIIAγ基因的完整cDNA片段。利用美国Applied Biosystems公司的测序试剂盒,以双脱氧核苷酸末端终止法(美国AppliedBiosystems公司)分别从PCR扩增片段两端测序。序列拼接后得到一长321bp的DNA序列,它包括完整的SlTFIIAγ基因cDNA序列。利用PCR引物SlTFIIAγVF(5′-CCGGAATTCTTTGACAAGTCAATGACTG-3′)和SlTFIIAγVR(5′-CGCGGATCCTCACTGTGTGAGCAGCTTTG-3′),从包括完整的番茄SlTFIIAγ基因cDNA序列克隆中PCR扩增包含201bp的部分cDNA序列。申请人根据SlTFIIAγ基因在番茄基因组中的位置和结构,以SlTFIIAγ基因两侧的基因组序列为模板,设计了两条PCR引物SlTFIIAγgF(5′-ATGGCGACTTTTGAGCTATACAG-3′)和TFIIAγgR(5′-TCACTGTGTGAGCAGCTTTGAG-3′),从AilsaCraig中扩增包含SlTFIIAγ基因、长5028bp的DNA片段。利用美国Applied Biosystems公司的测序试剂盒,以双脱氧核苷酸末端终止法(美国Applied Biosystems公司)分别从PCR扩增片段两端测序。序列拼接后得到一长5028bp的DNA序列,它包括完整的SlTFIIAγ基因序列。比较分析SlTFIIAγ基因的基因组序列和cDNA序列,确定SlTFIIAγ基因由5028个核苷酸组成,包含三个外显子,两个内含子(图2)。第一个外显子由129个核苷酸组成(位于序列表SEQ ID NO:3的1-129位);第一个内含子由2135个核苷酸组成(位于序列表SEQ ID NO:3的130-2264位);第二个外显子由51个核苷酸组成(位于序列表SEQ ID NO:3的2265-2315位);第二个内含子由2572个核苷酸组成(位于序列表SEQ ID NO:3的2316-4887位);第三个外显子由141个核苷酸组成(位于序列表SEQ ID NO:3的4888-5028位)。The applicant searched the tomato gene sequence in the international public nucleotide database according to the rice OsTFIIAγ5 gene, and designed two PCR primers, SlTFIIAγF (5′-CGCGGATCCATGGCGACTTTTGAGCTATAC-3′) and SlTFIIAγR (5′-CCGCTCGAGTCACTGTGTGAGCAGCTTTGAG-3′). A complete cDNA fragment containing the tomato SlTFIIAγ gene was amplified from the cDNA obtained by reverse transcription of the total RNA of the tomato variety Ailsa Craig, but not limited to this variety). Both ends of the PCR amplified fragments were sequenced by the dideoxynucleotide end termination method (Applied Biosystems, USA) using a sequencing kit from Applied Biosystems, USA. A DNA sequence with a length of 321 bp was obtained after sequence splicing, which included the complete cDNA sequence of the SlTFIIAγ gene. Using PCR primers SlTFIIAγVF (5'-CCGGAATTCTTTGACAAGTCAATGACTG-3') and SlTFIIAγVR (5'-CGCGGATCCTCACTGTGTGAGCAGCTTTG-3'), a partial cDNA sequence containing 201 bp was PCR amplified from the clone containing the complete tomato SlTFIIAγ gene cDNA sequence. According to the position and structure of the SlTFIIAγ gene in the tomato genome, the applicant designed two PCR primers, SlTFIIAγgF (5′-ATGGCGACTTTTGAGCTATACAG-3′) and TFIIAγgR (5′-TCACTGTGTGAGCAGCTTTGAG-3, using the genome sequences on both sides of the SlTFIIAγ gene as templates) '), a 5028 bp DNA fragment containing the SlTFIIAγ gene was amplified from AilsaCraig. Both ends of the PCR amplified fragments were sequenced by the dideoxynucleotide end-termination method (Applied Biosystems, USA) using a sequencing kit from Applied Biosystems, USA. A DNA sequence with a length of 5028bp was obtained after the sequence was assembled, which included the complete SlTFIIAγ gene sequence. Comparing and analyzing the genome sequence and cDNA sequence of the SlTFIIAγ gene, it was determined that the SlTFIIAγ gene was composed of 5028 nucleotides, including three exons and two introns (Fig. 2). The first exon consists of 129 nucleotides (located at positions 1-129 of SEQ ID NO: 3 of the sequence listing); the first intron consists of 2135 nucleotides (located in SEQ ID NO: 3 of the sequence listing) 3 of 130-2264); the second exon consists of 51 nucleotides (located at 2265-2315 of SEQ ID NO: 3 of the sequence listing); the second intron consists of 2572 nucleotides (located at positions 2316-4887 of SEQ ID NO: 3 of the Sequence Listing); the third exon consists of 141 nucleotides (located at positions 4888-5028 of SEQ ID NO: 3 of the Sequence Listing).
6.从辣椒中分离克隆CaTFIIAγ基因以及基因结构分析6. Isolation and cloning of CaTFIIAγ gene from pepper and analysis of gene structure
申请人根据水稻OsTFIIAγ5基因在国际公共核苷酸数据库检索辣椒基因序列,设计了两条PCR引物CaTFIIAγF(5′-CGCGGATCCATGGCGACTTTTGAGCTATAC-3′)和CaTFIIAγR(5′-CCGCTCGAGTCACTGTGTGAGCAGCTTTGAG-3′),从辣椒(例如辣椒品种华50,但不限于该品种)的总RNA反转录得到的cDNA中扩增包含辣椒CaTFIIAγ基因的完整cDNA片段。利用美国Applied Biosystems公司的测序试剂盒,以双脱氧核苷酸末端终止法(美国AppliedBiosystems公司)分别从PCR扩增片段两端测序。序列拼接后得到一长321bp的DNA序列,它包括完整的CaTFIIAγ基因cDNA序列。利用PCR引物CaTFIIAγVF(5′-CCGGAATTCTTTGACAAGTCAATGACTG-3′)和CaTFIIAγVR(5′-CGCGGATCCTCACTGTGTGAGCAGCTTTG-3′),从包括完整的辣椒CaTFIIAγ基因cDNA序列克隆中PCR扩增包含201bp的部分cDNA序列。申请人根据CaTFIIAγ基因在辣椒基因组中的位置和结构,以CaTFIIAγ基因两侧的基因组序列为模板,设计了两条PCR引物CaTFIIAγgF(5′-ATGGCGACTTTTGAGCTATACAGG-3′)和CaTFIIAγgR(5′-TCACTGTGTGAGCAGCTTTG-3′),从辣椒品种华50中扩增包含CaTFIIAγ基因、长5695bp的DNA片段。利用美国Applied Biosystems公司的测序试剂盒,以双脱氧核苷酸末端终止法(美国Applied Biosystems公司)分别从PCR扩增片段两端测序。序列拼接后得到一长5695bp的DNA序列,它包括完整的CaTFIIAγ基因序列。比较分析CaTFIIAγ基因的基因组序列和cDNA序列,确定CaTFIIAγ基因由5695个核苷酸组成,包含三个外显子,两个内含子(见图2)。第一个外显子由129个核苷酸组成(位于序列表SEQ ID NO:2的1-129位);第一个内含子由2321个核苷酸组成(位于序列表SEQID NO:2的130-2450位;第二个外显子由51个核苷酸组成(位于序列表SEQ ID NO:2的2451-2501位);第二个内含子由3053个核苷酸组成(位于序列表SEQ ID NO:2的2502-5554位);第三个外显子由141个核苷酸组成(位于序列表SEQ ID NO:1的5555-5695位)。The applicant searched the pepper gene sequence in the international public nucleotide database according to the rice OsTFIIAγ5 gene, and designed two PCR primers, CaTFIIAγF (5′-CGCGGATCCATGGCGACTTTTGAGCTATAC-3′) and CaTFIIAγR (5′-CCGCTCGAGTCACTGTGTGAGCAGCTTTGAG-3′). A complete cDNA fragment comprising the pepper CaTFIAγ gene was amplified from the cDNA obtained by reverse transcription of the total RNA of pepper variety Hua 50, but not limited to this variety. Both ends of the PCR amplified fragments were sequenced by the dideoxynucleotide end termination method (Applied Biosystems, USA) using a sequencing kit from Applied Biosystems, USA. A DNA sequence with a length of 321 bp was obtained after the sequence splicing, which included the complete cDNA sequence of the CaTFIIAγ gene. Using the PCR primers CaTFIIAγVF (5′-CCGGAATTCTTTGACAAGTCAATGACTG-3′) and CaTFIIAγVR (5′-CGCGGATCCTCACTGTGTGAGCAGCTTTG-3′), a partial cDNA sequence containing 201 bp was PCR amplified from the clone including the complete pepper CaTFIIAγ gene cDNA sequence. The applicant designed two PCR primers, CaTFIIAγgF (5′-ATGGCGACTTTTGAGCTATACAGG-3′) and CaTFIIAγgR (5′-TCACTGTGTGAGCAGCTTTG-3, according to the position and structure of the CaTFIIAγ gene in the pepper genome and the genome sequences on both sides of the CaTFIIAγ gene as templates. '), a 5695 bp DNA fragment containing the CaTFIIAγ gene was amplified from the pepper variety Hua 50. Both ends of the PCR amplified fragments were sequenced by the dideoxynucleotide end-termination method (Applied Biosystems, USA) using a sequencing kit from Applied Biosystems, USA. A DNA sequence with a length of 5695bp was obtained after the sequence was spliced, which included the complete sequence of the CaTFIIAγ gene. Comparing and analyzing the genome sequence and cDNA sequence of the CaTFIIAγ gene, it was determined that the CaTFIIAγ gene consists of 5695 nucleotides, including three exons and two introns (see Figure 2). The first exon consists of 129 nucleotides (located at positions 1-129 of SEQ ID NO: 2 in the sequence listing); the first intron consists of 2321 nucleotides (located in SEQ ID NO: 2 in the sequence listing) 130-2450; the second exon consists of 51 nucleotides (located at 2451-2501 of SEQ ID NO: 2 of the Sequence Listing); the second intron consists of 3053 nucleotides (located at The third exon consists of 141 nucleotides (positions 5555-5695 of SEQ ID NO: 1 in the sequence listing).
基因组序列对比分析发现,番茄SlTFIIAγ基因和辣椒CaTFIIAγ基因的cDNA序列一致,它们编码相同的蛋白质。它们的蛋白质序列和水稻的不同。Genome sequence comparison analysis showed that the cDNA sequences of tomato SlTFIIAγ gene and pepper CaTFIIAγ gene were identical, and they encoded the same protein. Their protein sequences are different from those of rice.
实施例2:抑制表达水稻OsTFIIAγ5基因验证其在水稻抗病中的功能Example 2: Inhibiting the expression of rice OsTFIIAγ5 gene to verify its function in rice disease resistance
1.抑制表达遗传转化载体的构建1. Construction of genetic transformation vector for inhibiting expression
本发明采用RNA干扰(RNA interference,RNAi)技术(Smith等,2000)、通过抑制水稻品种中花11中OsTFIIAγ5基因的表达,验证该基因的功能。这个技术途径的主要机理:将目标基因的部分片段以反向重复的形式与能够表达双链RNA(double strand RNA,dsRNA)的载体连接,通过遗传转化将该载体导入植物中。获得的转化植株大量表达与目标基因部分片段同源的dsRNA。这些dsRNA迅速形成短干扰RNA(short interfering RNA,siRNA)。这些siRNA与目标基因的转录子(mRNA)互补配对,在细胞内特殊酶的作用下使目标基因的转录子降解,从而在mRNA水平上抑制目标基因的功能。研究者可以通过转基因植株表型的改变,验证目标基因的功能。RNA干扰技术已被广泛用于基因功能的验证(Smith等,2000)。The present invention adopts RNA interference (RNAi) technology (Smith et al., 2000) to verify the function of the gene by inhibiting the expression of the OsTFIIAγ5 gene in the rice variety Zhonghua 11. The main mechanism of this technical approach: Partial fragments of the target gene are ligated in the form of inverted repeats with a vector capable of expressing double-stranded RNA (dsRNA), and the vector is introduced into plants through genetic transformation. The obtained transformed plants express a large amount of dsRNA that is homologous to a partial fragment of the target gene. These dsRNAs rapidly form short interfering RNAs (siRNAs). These siRNAs are complementary to the target gene's transcript (mRNA) and degrade the target gene's transcript under the action of special enzymes in the cell, thereby inhibiting the function of the target gene at the mRNA level. Researchers can verify the function of the target gene by changing the phenotype of the transgenic plant. RNA interference technology has been widely used for the verification of gene function (Smith et al., 2000).
本发明利用能够表达dsRNA的农杆菌介导的遗传转化载体是pDS1301(Chu等,2006,图3),通过上述农杆菌介导的遗传转化方法将OsTFIIAγ5基因的cDNA片段转入水稻品种中花11,抑制中花11中OsTFIIAγ5基因的表达。具体操作步骤如下:The present invention utilizes the Agrobacterium-mediated genetic transformation vector capable of expressing dsRNA is pDS1301 (Chu et al., 2006, Figure 3), and the cDNA fragment of the OsTFIIAγ5 gene is transformed into the rice variety Zhonghua 11 by the above-mentioned Agrobacterium-mediated genetic transformation method , inhibited the expression of OsTFIIAγ5 gene in Zhonghua 11. The specific operation steps are as follows:
用限制性内切酶BamHI和KpnI消化TFIIAγ/Xa5基因的cDNA克隆(图2)、中间载体pGEM-G(美国Promega公司)和遗传转化载体pDS1301,酶切完全后在65℃水浴10min灭活限制性内切酶。将酶切片段在0.8%琼脂糖凝胶电泳后切胶回收目的条带。用T4-DNA连接酶将cDNA克隆的外源片段分别与中间载体pGEM-GZ和遗传转化载体pDS1301进行连接。将连接好的载体电转化进入大肠杆菌菌株DH10B,电转化后获得的克隆质粒经BamHI和KpnI酶切筛选验证阳性克隆。The cDNA clone of TFIIAγ/Xa5 gene (Figure 2), the intermediate vector pGEM-G (Promega, USA) and the genetic transformation vector pDS1301 were digested with restriction enzymes BamHI and KpnI, and the restriction was inactivated in a water bath at 65 °C for 10 min after the digestion was complete. sex endonuclease. The enzyme-digested fragment was electrophoresed on a 0.8% agarose gel and the target band was recovered. The exogenous fragment of cDNA clone was ligated with intermediate vector pGEM-GZ and genetic transformation vector pDS1301 with T4-DNA ligase, respectively. The ligated vector was electro-transformed into Escherichia coli strain DH10B, and the cloned plasmid obtained after electro-transformation was screened by BamHI and KpnI to verify positive clones.
用限制性内切酶SacI和SpeI消化携带cDNA克隆外源片段的中间载体质粒和已经连入第一链外源片段的pDS1301载体质粒。酶切完全后在65℃水浴10min灭活限制性内切酶。用T4-DNA连接酶将cDNA克隆的外源片段连接到携带OsTFIIAγ5片段的pDS1301质粒的SacI/SpeI酶切位点。用SacI和SpeI双酶切反应筛选阳性质粒克隆,并命名阳性克隆为pDS1301-TFIIAγ(图3)。The intermediate vector plasmid carrying the exogenous fragment of the cDNA clone and the pDS1301 vector plasmid that had been ligated into the first-strand exogenous fragment were digested with restriction enzymes SacI and SpeI. After the digestion was complete, the restriction enzymes were inactivated in a water bath at 65 °C for 10 min. The exogenous fragment of the cDNA clone was ligated into the SacI/SpeI restriction site of the pDS1301 plasmid carrying the OsTFIIAγ5 fragment using T4-DNA ligase. The positive plasmid clones were screened by SacI and SpeI double digestion reaction, and the positive clone was named pDS1301-TFIIAγ (Fig. 3).
2.遗传转化和T0代遗传转化植株分析2. Genetic transformation and analysis of T 0 generation genetically transformed plants
采用农杆菌介导的遗传转化方法(Lin和Zhang,2005)将pDS1301-TFIIAγ导入水稻品种中花11。获得的遗传转化植株被命名为OsTFIIAγ5-RNAi。本发明共获得独立转化植株10株。对全部转化植株在成株期阶段接种白叶枯病菌株PXO99(菌株PXO99由菲律宾国际水稻研究所惠赠,Sun等,2004),与对照中花11及遗传转化阴性植株相比8株阳性遗传转化植株的抗性显著增强(P<0.01)(表1)。pDS1301-TFIIAγ was introduced into the rice cultivar Zhonghua 11 using the Agrobacterium-mediated genetic transformation method (Lin and Zhang, 2005). The obtained genetically transformed plant was named OsTFIIAγ5-RNAi. In the present invention, a total of 10 independently transformed plants are obtained. All transformed plants were inoculated with bacterial blight strain PXO99 at the adult stage (strain PXO99 was a gift from the International Rice Research Institute of the Philippines, Sun et al., 2004), compared with the control Zhonghua 11 and the negative plants of genetic transformation, 8 strains were positive for genetic transformation The resistance of the plants was significantly enhanced (P<0.01) (Table 1).
表1 T0代遗传转化植株(pDS1301-TFIIAγ)对白叶枯病菌株PXO99的反应Table 1 Response of T0 generation genetically transformed plants (pDS1301-TFIIAγ) to bacterial blight strain PXO99
(1)每株遗传转化基因植株接种5-7片叶,14天后调查病斑长度,每个数据来自于多个叶片的平均值。(1) Each genetically transformed gene plant was inoculated with 5-7 leaves, and the length of the lesions was investigated 14 days later, and each data was obtained from the average value of multiple leaves.
(2)阴性转化植株,其它植株为阳性转化植株。(2) Negative transformed plants, other plants are positive transformed plants.
为进一步验证遗传转化植株的抗病能力增强是否与OsTFIIAγ5基因表达量相关,本发明采用上述实时定量RT-PCR方法检测了其中10株T0代遗传转化植株中OsTFIIAγ5基因的表达量。实验结果显示转化植株中OsTFIIAγ5基因的表达量变化与植株的病斑长度呈极显著负相关(相关系数为0.8748,α=0.01,n=10)(图4)。抗病性增强的遗传转化植株中OsTFIIAγ5基因的表达量与对照材料中花11相比显著减少(P<0.01)。而抗病表型无明显变化的阴性转化植株中OsTFIIAγ5基因表达量与中花11相比无显著变化(P>0.05)。该结果说明遗传转化植株对白叶枯病菌的抗性增强是因为OsTFIIAγ5基因的表达量降低;OsTFIIAγ5基因的编码产物在水稻抗白叶枯病反应中发挥负调控因子的作用;抑制水稻中OsTFIIAγ5基因的表达,可增强水稻对白叶枯病的抗性。To further verify whether the enhanced disease resistance of genetically transformed plants is related to the expression of OsTFIIAγ5 gene, the present invention uses the above real-time quantitative RT-PCR method to detect the expression of OsTFIIAγ5 gene in 10 T0 generation genetically transformed plants. The experimental results showed that the expression of OsTFIIAγ5 gene in transformed plants was significantly negatively correlated with the length of plant lesions (correlation coefficient was 0.8748, α=0.01, n=10) (Fig. 4). Compared with the control material Zhonghua 11, the expression of OsTFIIAγ5 gene in the genetically transformed plants with enhanced disease resistance was significantly decreased (P<0.01). However, the expression of OsTFIIAγ5 gene in negatively transformed plants with no obvious change in disease resistance phenotype had no significant change compared with Zhonghua 11 (P>0.05). The results indicate that the enhanced resistance of genetically transformed plants to bacterial blight is due to the decreased expression of OsTFIIAγ5 gene; the encoded product of OsTFIIAγ5 gene plays a role as a negative regulator in rice resistance to bacterial blight; inhibits the expression of OsTFIIAγ5 gene in rice Expression can enhance the resistance of rice to bacterial blight.
3.分析T1代遗传转化植株3. Analysis of T1 Generation Genetically Transformed Plants
对在T0代抗性增强的两株遗传转化植株(OsTFIIAγ5-RNAi3和OsTFIIAγ5-RNAi7)的T1代家系进行分析。在孕穗期时于田间接种白叶枯病菌PXO99,同时用遗传转化载体pDS1301上的特异PCR引物pMCG-f(5′-GGCTCACCAAACCTTAAACAA-3′)和pMCG-r(5′-CTGAGCTACACATGCTCAGGTT-3′)。检测阳性植株。结果显示与对照中花11相比所有抗性显著增强的植株都携带pDS1301载体序列;而抗性与对照相比无显著变化的植株都不携带pDS1301载体序列(表2、图5)。说明遗传转化植株抗病表型与转入的可以形成双链RNA的OsTFIIAγ5基因片段共分离,进一步证明抑制OsTFIIAγ5基因表达可增强水稻抗病性。The T1 generation lineages of two genetically transformed plants (OsTFIIAγ5-RNAi3 and OsTFIIAγ5-RNAi7) with enhanced resistance in the TO generation were analyzed. Bacterial blight PXO99 was inoculated in the field at the booting stage, and the specific PCR primers pMCG-f (5'-GGCTCACCAAACCTTAAACAA-3') and pMCG-r (5'-CTGAGCTACACATGCTCAGGTT-3') on the genetic transformation vector pDS1301 were used at the same time. Test positive plants. The results showed that all plants with significantly enhanced resistance compared with the control Zhonghua 11 carried the pDS1301 vector sequence; while the plants with no significant change in resistance compared with the control did not carry the pDS1301 vector sequence (Table 2, Figure 5). This indicated that the disease-resistant phenotype of the genetically transformed plants was co-segregated with the transfected OsTFIIAγ5 gene fragment that could form double-stranded RNA, further proving that inhibiting the expression of OsTFIIAγ5 could enhance rice disease resistance.
表2 T1代遗传转化植株(pDS1301-TFIIAγ)对白叶枯病菌株PXO99的反应Table 2 Response of T1 generation genetically transformed plants (pDS1301-TFIIAγ) to bacterial blight strain PXO99
(1)每株遗传转化基因植株接种5-7片叶,14天后调查病斑和病叶长度,每个数据来自于多个叶片的平均值。(1) Each genetically transformed gene plant was inoculated with 5-7 leaves. After 14 days, the diseased spots and the length of diseased leaves were investigated, and each data came from the average value of multiple leaves.
4.遗传转化植株对白叶枯病菌抗谱分析4. Analysis of resistance spectrum of genetically transformed plants to bacterial blight
对在T0代抗性增强的三株遗传转化植株(OsTFIIAγ5-RNAi1、OsTFIIAγ5-RNAi3和OsTFIIAγ5-RNAi7)的T1代家系进行分析。用遗传转化载体pDS1301上的特异PCR引物pMCG-f(5′-GGCTCACCAAACCTTAAACAA-3′)和pMCG-r(5′-CTGAGCTACACATGCTCAGGTT-3′)检测阳性植株。在孕穗期时于田间接种菲律宾白叶枯病菌生理小种PXO99、PXO61、PXO71、PXO79、PXO86、PXO112、PXO341和PXO347,日本白叶枯病菌生理小种T7174,韩国白叶枯病菌生理小种KACC10331,中国白叶枯病菌生理小种Zhe173、FuJ23、KS-1-21和YN11。结果显示与对照中花11相比所有携带pDS1301载体序列植株的抗性都显著增强(图6)。证明抑制OsTFIIAγ5基因表达可增强水稻对白叶枯病的广谱抗性。The T1 generation lineages of three genetically transformed plants (OsTFIIAγ5-RNAi1, OsTFIIAγ5-RNAi3 and OsTFIIAγ5-RNAi7) with enhanced resistance in the TO generation were analyzed. Positive plants were detected with specific PCR primers pMCG-f (5'-GGCTCACCAAAACCTTAAACAA-3') and pMCG-r (5'-CTGAGCTACACATGCTCAGGTT-3') on the genetic transformation vector pDS1301. At the booting stage, the field was inoculated with the physiological races PXO99, PXO61, PXO71, PXO79, PXO86, PXO112, PXO341 and PXO347, the physiological races of the Japanese bacterial blight T7174, and the Korean bacterial bacterial races KACC10331. , Chinese bacterial blight physiological races Zhe173, FuJ23, KS-1-21 and YN11. The results showed that the resistance of all plants carrying the pDS1301 vector sequence was significantly enhanced compared to the control Zhonghua 11 (Figure 6). It was proved that inhibition of OsTFIIAγ5 gene expression can enhance the broad-spectrum resistance of rice to bacterial blight.
5.遗传转化植株对细菌性条斑病抗性分析5. Analysis of the resistance of genetically transformed plants to bacterial leaf streak
对在T0代抗性增强的三株遗传转化植株(OsTFIIAγ5-RNAi1、OsTFIIAγ5-RNAi3和OsTFIIAγ5-RNAi7)的T1代家系进行分析。用遗传转化载体pDS1301上的特异PCR引物pMCG-f(5′-GGCTCACCAAACCTTAAACAA-3′)和pMCG-r(5′-CTGAGCTACACATGCTCAGGTT-3′)检测阳性植株。在4-5叶期时采用针刺法接种中国细菌性条斑病菌生理小种RH3、RS85、RS105、JSB2-24和HNB8-47,接种14天后检测发表情况(Chen等,2006)。结果显示与对照中花11相比所有携带pDS1301载体序列植株的抗性都显著增强(图7)。证明抑制OsTFIIAγ5基因表达也可增强水稻对细菌性条斑病的抗病性。The T1 generation lineages of three genetically transformed plants (OsTFIIAγ5-RNAi1, OsTFIIAγ5-RNAi3 and OsTFIIAγ5-RNAi7) with enhanced resistance in the TO generation were analyzed. Positive plants were detected with specific PCR primers pMCG-f (5'-GGCTCACCAAAACCTTAAACAA-3') and pMCG-r (5'-CTGAGCTACACATGCTCAGGTT-3') on the genetic transformation vector pDS1301. Physiological races RH3, RS85, RS105, JSB2-24 and HNB8-47 were inoculated by acupuncture at the 4-5 leaf stage and published 14 days after inoculation (Chen et al., 2006). The results showed that the resistance of all plants carrying the pDS1301 vector sequence was significantly enhanced compared to the control Zhonghua 11 (Figure 7). It was proved that inhibition of OsTFIIAγ5 gene expression can also enhance the resistance of rice to bacterial leaf spot.
实施例3:水稻OsTFIIAγ5基因点突变赋予其在广谱抗病中的功能Example 3: Point mutation of rice OsTFIIAγ5 gene confers its function in broad-spectrum disease resistance
1.水稻OsTFIIAγ5基因点突变赋予其广谱抗白叶枯病1. Point mutation of rice OsTFIIAγ5 gene confers broad-spectrum resistance to bacterial blight
水稻家系IRBB5和IR24是近等基因系。IR24携带OsTFIIAγ5基因,其编码的OsTFIIAγ5蛋白的第39位氨基酸是缬氨酸(V);IRBB5携带突变的OsTFIIAγ5基因,即隐性xa5基因。隐性xa5基因编码突变的OsTFIIAγ5蛋白(OsTFIIAγ5V39E或xa5),其第39位氨基酸由缬氨酸突变成谷氨酸(E)。在孕穗期时于田间接种菲律宾白叶枯病菌生理小种PXO99、PXO339、PXO61、PXO71、PXO79、PXO86、PXO112、PXO341和PXO347,日本白叶枯病菌生理小种T7174,韩国白叶枯病菌生理小种KACC10331,中国白叶枯病菌生理小种Zhe173、FuJ23、KS-1-21和YN11。结果显示IRBB5对这些白叶枯病菌生理小种抗性都显著增强(图8)。证明突变OsTFIIAγ5基因可增强水稻对白叶枯病的抗病性。Rice lineages IRBB5 and IR24 are near-isogenic lines. IR24 carries the OsTFIIAγ5 gene, and the 39th amino acid of the encoded OsTFIIAγ5 protein is valine (V); IRBB5 carries the mutated OsTFIIAγ5 gene, namely the recessive xa5 gene. The recessive xa5 gene encodes a mutated OsTFIIAγ5 protein (OsTFIIAγ5 V39E or xa5) whose amino acid at position 39 is mutated from valine to glutamic acid (E). At the booting stage, the field was inoculated with the physiological races PXO99, PXO339, PXO61, PXO71, PXO79, PXO86, PXO112, PXO341 and PXO347, the physiological races T7174 of bacterial blight in Japan, and the physiological races of bacterial blight in Korea. Species KACC10331, Chinese bacterial blight physiological races Zhe173, FuJ23, KS-1-21 and YN11. The results showed that the resistance of IRBB5 to these bacterial races was significantly enhanced (Fig. 8). It was proved that the mutant OsTFIIAγ5 gene can enhance the resistance of rice to bacterial blight.
2.水稻OsTFIIAγ5基因点突变赋予其广谱抗细菌性条斑病2. The point mutation of rice OsTFIIAγ5 gene confers broad-spectrum resistance to bacterial leaf stripe
对IRBB5和IR24接种细菌性条斑病菌。在4-5叶期时采用针刺法接种中国细菌性条斑病菌生理小种RH3、RS85、RS105、JSB2-24和HNB8-47,接种14天后检测发表情况。结果显示与IR24相比,IRBB5对这些细菌性条斑病菌生理小种抗性都显著增强(图9)。证明突变OsTFIIAγ5基因也可增强水稻对细菌性条斑病菌的抗病性。IRBB5 and IR24 were inoculated with bacterial leaf spot. Physiological races RH3, RS85, RS105, JSB2-24 and HNB8-47 of Chinese bacterial leaf spot were inoculated by acupuncture at the 4-5 leaf stage, and published 14 days after inoculation. The results showed that compared with IR24, IRBB5 significantly enhanced the resistance to these bacterial races of S. striatum (FIG. 9). It was proved that the mutant OsTFIIAγ5 gene can also enhance the resistance of rice to bacterial leaf spot.
3.突变OsTFIIAγ5不影响水稻的产量性状3. Mutation of OsTFIIAγ5 does not affect the yield traits of rice
对IRBB5和IR24在大田自然种植,正常水肥管理,调查农艺性状。结果显示携带OsTFIIAγ5基因的IR24和携带xa5基因的IRBB5的各项农艺性状统计学上没有差别(表3)。IRBB5 and IR24 were planted naturally in the field with normal water and fertilizer management, and agronomic traits were investigated. The results showed that the agronomic traits of IR24 carrying the OsTFIIAγ5 gene and IRBB5 carrying the xa5 gene were not statistically different (Table 3).
表3 水稻品种IR24和IRBB5农艺性状比较Table 3 Comparison of agronomic traits between rice varieties IR24 and IRBB5
实施例4:抑制表达番茄SlTFIIAγ基因验证其在抗病中的功能Example 4: Inhibition of expression of tomato SlTFIIAγ gene to verify its function in disease resistance
1.抑制表达瞬时转化载体的构建1. Construction of a transient transformation vector for inhibiting expression
本发明采用病毒诱导的基因沉默干扰(virus induced gene silencing,VIGS)技术、通过抑制番茄品种Ailsa Craig中SlTFIIAγ基因的表达,验证该基因的功能。这个技术途径的主要机理是:将目标基因的部分片段与烟草脆裂病毒诱导的基因沉默载体连接,通过瞬时转化将该载体导入番茄中可诱导番茄体内该目标基因的沉默。VIGS技术已被广泛用于番茄基因功能的验证(Liu等,2002)。The present invention adopts virus induced gene silencing (VIGS) technology to verify the function of the gene by inhibiting the expression of the SlTFIIAγ gene in the tomato variety Ailsa Craig. The main mechanism of this technical approach is as follows: a partial fragment of the target gene is linked with a gene silencing vector induced by tobacco rattle virus, and the vector is introduced into tomato through transient transformation to induce the silencing of the target gene in tomato. VIGS technology has been widely used for the verification of tomato gene function (Liu et al., 2002).
本发明利用的烟草脆裂病毒诱导的基因沉默载体是pTRV2(Liu等,2002),改造后的表达载体pTRV2-SlTFIIAγ的构建图见图10),通过农杆菌介导的瞬时转化方法将番茄SlTFIIAγ基因的cDNA片段转入番茄品种Ailsa Craig中,抑制Ailsa Craig中SlTFIIAγ基因的表达。具体操作步骤如下:The gene silencing vector induced by tobacco crisp virus used in the present invention is pTRV2 (Liu et al., 2002), and the construction diagram of the transformed expression vector pTRV2-SlTFIIAγ is shown in Figure 10). The cDNA fragment of the gene was transferred into the tomato variety Ailsa Craig to inhibit the expression of the SlTFIIAγ gene in Ailsa Craig. The specific operation steps are as follows:
用限制性内切酶EcoRI和BamHI酶切番茄SlTFIIAγ基因的cDNA克隆和转化载体pTRV2,酶切完全后在65℃水浴10min灭活限制性内切酶。将酶切片段在0.8%琼脂糖凝胶电泳后切胶回收目的条带。用T4-DNA连接酶将cDNA克隆的外源片段与转化载体pTRV2进行连接。将连接好的载体电转化进入大肠杆菌菌株DH10B,电转化后获得的克隆质粒经EcoRI和BamHI酶切筛选验证阳性克隆,并命名阳性克隆为pTRV2-SlTFIIAγ(图10)。The cDNA clone and transformation vector pTRV2 of tomato SlTFIIAγ gene were digested with restriction enzymes EcoRI and BamHI, and the restriction enzymes were inactivated in a water bath at 65°C for 10 min after the digestion was complete. The enzyme-digested fragment was electrophoresed on a 0.8% agarose gel and the target band was recovered. The exogenous fragment of the cDNA clone was ligated with the transformation vector pTRV2 using T4-DNA ligase. The ligated vector was electrotransformed into Escherichia coli strain DH10B, and the cloned plasmid obtained after electrotransformation was screened by EcoRI and BamHI to verify the positive clone, and named the positive clone as pTRV2-SlTFIIAγ (Figure 10).
2.瞬时转化和遗传转化植株分析2. Transient Transformation and Analysis of Genetically Transformed Plants
采用烟草脆裂病毒诱导的基因沉默的瞬时转化方法(Liu等,2002)将pTRV2-SlTFIIAγ导入番茄品种Ailsa Craig中(但不限于该品种),同时将pTRV2-GFP(绿色荧光蛋白基因)导入番茄品种Ailsa Craig(但不限于该品种)中作为对照(Liu等,2002)。30天后对全部瞬时转化植株接种番茄细菌性疮痂病(Xanthonmonas campestris pv.vesicatoria)23-1(本菌株与下述测试辣椒斑点病的菌株为同一个菌株,可以同时危害辣椒和番茄,但是引起的病害名称叫法不一样;Sun等,1999)。与携带pTRV2-GFP瞬时转化植株相比,携带pTRV2-SlTFIIAγ瞬时转化植株的抗性显著增强(P<0.01)(见图11中的A图)。pTRV2-SlTFIIAγ was introduced into the tomato variety Ailsa Craig (but not limited to this variety) using the transient transformation method of tobacco rattle virus-induced gene silencing (Liu et al., 2002), while pTRV2-GFP (green fluorescent protein gene) was introduced into tomato Variety Ailsa Craig (but not limited to this variety) served as a control (Liu et al., 2002). After 30 days, all transiently transformed plants were inoculated with tomato bacterial scab (Xanthonmonas campestris pv.vesicatoria) 23-1 (this strain and the following strain tested for pepper spot disease are the same strain, which can harm pepper and tomato at the same time, but cause Disease names vary; Sun et al., 1999). Compared with the transiently transformed plants carrying pTRV2-GFP, the resistance of the transiently transformed plants carrying pTRV2-SlTFIIAγ was significantly enhanced (P<0.01) (see panel A in Figure 11).
为进一步验证携带pTRV2-SlTFIIAγ瞬时转化植株的抗病能力增强是否与SlTFIIAγ基因表达量相关,本发明采用上述实时定量RT-PCR方法检测了瞬时转化植株中SlTFIIAγ基因的表达量。试验结果显示抗病性增强的瞬时转化植株中SlTFIIAγ基因的表达量与对照相比显著减少(P<0.01B)(见图11中的图B)。同时接种番茄细菌性疮痂病3天后,抗病性增强的瞬时转化植株中细菌的数量与对照相比也显著减少(P<0.01)(见图11中的C图)。该结果说明番茄SlTFIIAγ基因的编码产物在番茄抗细菌性疮痂病反应中发挥负调控因子的作用。抑制番茄中SlTFIIAγ基因的表达,可增强番茄对细菌性疮痂病的抗性。In order to further verify whether the enhanced disease resistance of the transiently transformed plants carrying pTRV2-SlTFIIAγ is related to the expression level of SlTFIIAγ gene, the present invention adopts the above real-time quantitative RT-PCR method to detect the expression level of SlTFIIAγ gene in the transiently transformed plants. The test results showed that the expression level of the SlTFIIAγ gene in the transiently transformed plants with enhanced disease resistance was significantly reduced compared with the control (P<0.01B) (see panel B in Figure 11 ). Three days after simultaneous inoculation of tomato bacterial scab, the number of bacteria in the transiently transformed plants with enhanced disease resistance was also significantly reduced compared to the control (P<0.01) (see panel C in Figure 11). The results indicated that the encoded product of the tomato SlTFIIAγ gene played a role as a negative regulator in the anti-bacterial scab response of tomato. Inhibiting the expression of SlTFIIAγ gene in tomato can enhance the resistance of tomato to bacterial scab.
实施例5:抑制表达辣椒CaTFIIAγ基因验证其在抗病中的功能Example 5: Inhibit the expression of pepper CaTFIAγ gene to verify its function in disease resistance
1.抑制表达瞬时转化载体的构建1. Construction of a transient transformation vector for inhibiting expression
本发明采用病毒诱导的基因沉默干扰技术、通过抑制辣椒品种华50(不限于该品种)中CaTFIIAγ基因的表达,验证该基因的功能。这个技术途径的主要机理是:将目标基因的部分片段与烟草脆裂病毒诱导的基因沉默载体连接,通过瞬时转化将该载体导入辣椒中可诱导辣椒体内该目标基因的沉默。VIGS技术已被广泛用于辣椒基因功能的验证(Chung等,2004)。The present invention adopts virus-induced gene silencing interference technology to verify the function of the gene by inhibiting the expression of the CaTFIIAγ gene in the pepper variety Hua 50 (not limited to this variety). The main mechanism of this technical approach is as follows: a partial fragment of the target gene is linked to a gene silencing vector induced by tobacco rattle virus, and the vector is introduced into capsicum by transient transformation to induce the silencing of the target gene in capsicum. VIGS technology has been widely used for the validation of pepper gene function (Chung et al., 2004).
本发明利用的烟草脆裂病毒诱导的基因沉默载体是pTRV2(Liu等,2002),改造后的表达载体为pTRV2-SlTFIIAγ(见图12),通过农杆菌介导的瞬时转化方法将辣椒CaTFIIAγ基因的cDNA片段转入辣椒品种华50中,抑制华50中CaTFIIAγ基因的表达。具体操作步骤如下:The gene silencing vector induced by tobacco crisp virus used in the present invention is pTRV2 (Liu et al., 2002), the modified expression vector is pTRV2-SlTFIIAγ (see Figure 12), and the pepper CaTFIIAγ gene is transformed by the transient transformation method mediated by Agrobacterium. The cDNA fragment was transferred into the pepper variety Hua 50 and inhibited the expression of CaTFIIAγ gene in Hua 50. The specific operation steps are as follows:
用限制性内切酶EcoRI和BamHI酶切辣椒CaTFIIAγ基因的cDNA克隆和转化载体pTRV2,酶切完全后在65℃水浴10min灭活限制性内切酶。将酶切片段在0.8%琼脂糖凝胶电泳后切胶回收目的条带。用T4-DNA连接酶将cDNA克隆的外源片段与转化载体pTRV2进行连接。将连接好的载体电转化进入大肠杆菌菌株DH10B,电转化后获得的克隆质粒经EcoRI和BamHI酶切筛选验证阳性克隆,并命名阳性克隆为pTRV2-CaTFIIAγ(图12)。The cDNA cloning and transformation vector pTRV2 of pepper CaTFIIAγ gene was digested with restriction enzymes EcoRI and BamHI, and the restriction enzymes were inactivated in a water bath at 65°C for 10 min after the digestion was complete. The enzyme-digested fragment was electrophoresed on a 0.8% agarose gel and the target band was recovered. The exogenous fragment of the cDNA clone was ligated with the transformation vector pTRV2 using T4-DNA ligase. The ligated vector was electro-transformed into E. coli strain DH10B, and the cloned plasmid obtained after electro-transformation was screened by EcoRI and BamHI to verify the positive clone, and named the positive clone as pTRV2-CaTFIIAγ (Figure 12).
2.瞬时转化和遗传转化植株分析2. Transient Transformation and Analysis of Genetically Transformed Plants
采用烟草脆裂病毒诱导的基因沉默的瞬时转化方法(Chung等,2004)将pTRV2-CaTFIIAγ导入辣椒品种华50中,同时将pTRV2-GFP导入辣椒品种华50中作为对照(Chung等,2004)。30天后对全部瞬时转化植株接种辣椒斑点病(Xanthonmonas campestrispv.vesicatoria)23-1(见Sun等,1999)。与携带pTRV2-GFP瞬时转化植株相比,携带pTRV2-CaTFIIAγ瞬时转化植株的抗性显著增强(P<0.01)(图13中的A图)。pTRV2-CaTFIAγ was introduced into capsicum cultivar Hua 50 using the transient transformation method of tobacco rattle virus-induced gene silencing (Chung et al., 2004), while pTRV2-GFP was introduced into capsicum cultivar Hua 50 as a control (Chung et al., 2004). Thirty days later, all transiently transformed plants were inoculated with pepper spot (Xanthonmonas campestrispv. vesicatoria) 23-1 (see Sun et al., 1999). The resistance of the transiently transformed plants carrying pTRV2-CaTFIAγ was significantly enhanced (P<0.01) compared to the transiently transformed plants carrying pTRV2-GFP (panel A in Figure 13).
为进一步验证携带pTRV2-CaTFIIAγ瞬时转化植株的抗病能力增强是否与CaTFIIAγ基因表达量相关,本发明采用上述实时定量RT-PCR方法检测了瞬时转化植株中CaTFIIAγ基因的表达量。试验结果显示抗病性增强的瞬时转化植株中CaTFIIAγ基因的表达量与对照相比显著减少(P<0.01)(见图13中的B图)。同时接种辣椒斑点病3天后,抗病性增强的瞬时转化植株中细菌的数量与对照相比也显著减少(P<0.01)(见图13中的C图)。该结果说明辣椒CaTFIIAγ基因的编码产物在辣椒抗辣椒斑点病反应中发挥负调控因子的作用。抑制辣椒中CaTFIIAγ基因的表达,可增强辣椒对辣椒斑点病的抗性。To further verify whether the enhanced disease resistance of the transiently transformed plants carrying pTRV2-CaTFIIAγ is related to the expression of the CaTFIIAγ gene, the present invention uses the above real-time quantitative RT-PCR method to detect the expression of the CaTFIIAγ gene in the transiently transformed plants. The test results showed that the expression of the CaTFIAγ gene in the transiently transformed plants with enhanced disease resistance was significantly reduced compared with the control (P<0.01) (see panel B in Figure 13 ). Three days after simultaneous inoculation with pepper spot, the number of bacteria in the transiently transformed plants with enhanced disease resistance was also significantly reduced (P<0.01) compared to the control (see panel C in Figure 13). The results indicated that the encoded product of pepper CaTFIAγ gene played a role as a negative regulator in pepper resistance to pepper spot disease. Inhibiting the expression of CaTFIAγ gene in pepper can enhance the resistance of pepper to pepper spot disease.
本发明通过对水稻OsTFIIAγ5基因、番茄SlTFIIAγ基因和辣椒CaTFIIAγ基因在植物-病原互作中的功能验证,以及实施例的分析,发现在水稻中抑制OsTFIIAγ5基因的表达可以显著增强水稻对白叶枯病菌和细菌性条斑病菌各生理小种的广谱抗性;在番茄中抑制SlTFIIAγ基因的表达可以增强番茄对细菌性疮痂病的抗性;在辣椒中抑制CaTFIIAγ基因的表达可以增强辣椒对辣椒斑点病的抗性。同时,我们发现突变水稻OsTFIIAγ5基因,即隐性xa5基因,可增强水稻对白叶枯病菌和细菌性条斑病菌各生理小种的广谱抗性。因此,可以在水稻种质资源中寻找携带隐性xa5基因的水稻品种,作为水稻抗白叶枯病菌和细菌性条斑病菌的育种资源。同时,也可以通过基因组DNA编辑技术将栽培水稻品种中的OsTFIIAγ5基因其第39位氨基酸由缬氨酸编辑突变成谷氨酸,以赋予水稻对白叶枯病菌和细菌性条斑病菌的广谱抗性。Through the functional verification of rice OsTFIIAγ5 gene, tomato SlTFIIAγ gene and pepper CaTFIIAγ gene in plant-pathogen interaction, and the analysis of examples, it is found that inhibiting the expression of OsTFIIAγ5 gene in rice can significantly enhance the resistance of rice to bacterial blight and bacterial blight. Broad-spectrum resistance of various physiological races of bacterial leaf spot; inhibition of SlTFIIAγ gene expression in tomato can enhance tomato resistance to bacterial scab; inhibition of CaTFIIAγ gene expression in pepper can enhance pepper's resistance to pepper spot disease resistance. At the same time, we found that mutant rice OsTFIIAγ5 gene, the recessive xa5 gene, can enhance the broad-spectrum resistance of rice to bacterial blight and bacterial leaf spot races. Therefore, it is possible to search for rice varieties carrying recessive xa5 gene in rice germplasm resources as breeding resources for rice resistance to bacterial blight and bacterial leaf spot. At the same time, the 39th amino acid of OsTFIIAγ5 gene in cultivated rice varieties can also be edited and mutated from valine to glutamic acid by genome DNA editing technology, so as to give rice a broad spectrum of bacterial blight and bacterial leaf spot. resistance.
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