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CN106289921B - The application of 2 ', 7 '-dichlorofluoresceins and its derivative in Protein Detection - Google Patents

The application of 2 ', 7 '-dichlorofluoresceins and its derivative in Protein Detection Download PDF

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CN106289921B
CN106289921B CN201610668170.6A CN201610668170A CN106289921B CN 106289921 B CN106289921 B CN 106289921B CN 201610668170 A CN201610668170 A CN 201610668170A CN 106289921 B CN106289921 B CN 106289921B
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protein
negative staining
dichlorofluoresceins
dichlorofluorescein
dyeing
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CN106289921A (en
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朱忠欣
孙佳
郁冬冬
陈志伟
丛维涛
金利泰
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Wenzhou Medical University
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Wenzhou Medical University
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    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N1/00Sampling; Preparing specimens for investigation
    • G01N1/28Preparing specimens for investigation including physical details of (bio-)chemical methods covered elsewhere, e.g. G01N33/50, C12Q
    • G01N1/30Staining; Impregnating ; Fixation; Dehydration; Multistep processes for preparing samples of tissue, cell or nucleic acid material and the like for analysis
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N27/00Investigating or analysing materials by the use of electric, electrochemical, or magnetic means
    • G01N27/26Investigating or analysing materials by the use of electric, electrochemical, or magnetic means by investigating electrochemical variables; by using electrolysis or electrophoresis
    • G01N27/416Systems
    • G01N27/447Systems using electrophoresis
    • GPHYSICS
    • G01MEASURING; TESTING
    • G01NINVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
    • G01N1/00Sampling; Preparing specimens for investigation
    • G01N1/28Preparing specimens for investigation including physical details of (bio-)chemical methods covered elsewhere, e.g. G01N33/50, C12Q
    • G01N1/30Staining; Impregnating ; Fixation; Dehydration; Multistep processes for preparing samples of tissue, cell or nucleic acid material and the like for analysis
    • G01N2001/302Stain compositions

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Abstract

本发明涉及蛋白质负染检测技术,具体地说是2′,7′‑二氯荧光素及其衍生物在蛋白质负染检测中的应用。本发明还提供了应用2′,7′‑二氯荧光素进行蛋白负染检测的方法,包括步骤:蛋白质凝胶电泳结束后直接染色;接着显影。本发明具有灵敏度高、操作简单迅速、重现性好、线性关系好、质谱兼容性好、使用安全、成本低廉等优点,可较好适用于高通量蛋白质组学的研究。The invention relates to a protein negative staining detection technology, in particular to the application of 2', 7'-dichlorofluorescein and its derivatives in protein negative staining detection. The invention also provides a method for protein negative staining detection using 2', 7'-dichlorofluorescein, comprising the steps of: direct staining after protein gel electrophoresis; and then developing. The invention has the advantages of high sensitivity, simple and rapid operation, good reproducibility, good linear relationship, good mass spectrometry compatibility, safe use, low cost and the like, and can be better applied to the research of high-throughput proteomics.

Description

The application of 2 ', 7 '-dichlorofluoresceins and its derivative in Protein Detection
Technical field
The present invention relates to protein negative staining detection techniques, specifically, the negative staining dye that the one kind for being related to protein detection is new Material.
Background technique
In proteomics research, gel protein staining technique is to be connected the pass of two dimensional electrophoresis and downstream mass spectral analysis Key technology.Current advanced mass spectrograph can analyze the trace protein of pg rank.Conventional gel protein staining technique has Coomassie brilliant blue staining, silver staining, fluorescent staining etc..Dying method with coomassie brilliant blue sensitivity is low, and argentation is complicated for operation, mass spectrum is simultaneous Capacitive is poor, and fluorescence colour is expensive.These factors seriously constrain the development of high throughput protein group.Although closely Many new staining techniques are developed over year, but there are still following one or several disadvantages: sensitivity is low, poor reproducibility, poison Property is big, mass spectrum is poor, expensive, cumbersome etc..New colouring method is found to adapt to current advanced mass spectrum point Analysis technology has become the task of top priority for the genome times afterwards comprehensively pushing proteomics development.2 ', 7 '-dichlorofluoresceins are gel egg White dyeing provides a kind of quick, sensitive method, and sensitivity reaches 0.1ng/band, can compare favourably with silver staining.And 2 ', 7 '-dichlorofluorescein negative staining methods are coloured to gel background, the structure of protein are not decorated or destruction, are had Good mass spectrum compensates for the defect of argentation mass spectrum difference.2 ', 7 '-dichlorofluorescein negative staining will well It is connected two dimensional electrophoresis and downstream mass spectral analysis, pushes the fast development of proteomics.
Summary of the invention
The purpose of the present invention is to provide the application of 2 ', 7 '-dichlorofluoresceins and its derivative in protein detection.
Related compound of the present invention refer to 2 ', 7 '-dichlorofluorescein anion be the sodium salt of parent nucleus, sylvite and Ammonium salt etc..
2 ', 7 '-dichlorofluorescein parent nucleus are as follows:
To achieve the purpose of the present invention, the present invention provides a kind of methods of protein on running gel negative staining, including such as Lower step:
1) protein example after SDS-PAGE electrophoresis is placed in 5~20min of dyeing in dyeing liquor, wherein dyeing liquor is 2 ', 7 '-dichlorofluoresceins containing w/v 0.05~1% or derivatives thereof, 0.05%~0.5% sodium carbonate and press body Methanol aqueous solution of the product than 30%~70%;Preferred dyeing time is 10min, preferred 2 ', 7 '-dichlorofluorescein and its is spread out The concentration of biology is 0.3%, and preferred concentration of sodium carbonate is 0.1%, and preferred methanol concentration is 50%.
2) dyeing liquor is discarded, 1~5min of developing liquid developing is added, wherein developer solution is the lemon containing w/v 1.4% Lemon acid and 1% trisodium citrate (pH=4), preferred developing time be 2min.
3) it detects, after gel-colored, can be placed under black background and directly visually observe;Or in Epson V700 scanner Under, reverse scan Mode scans, sensitivity is higher.
Early-stage study shows that the technology has the following advantages:
1) high sensitivity: 2 ', 7 '-dichlorofluorescein negative staining high sensitivities are in hundreds times of dying method with coomassie brilliant blue, and silver Dye method sensitivity is suitable;
2) easy to operate rapid: operating procedure is few, can complete in 12min;
3) it favorable reproducibility: is influenced by external conditions such as temperature, shaking table hunting frequencies small;
4) good reversibility: it is easy decoloration;
5) mass spectrum is good: since 2 ', 7 '-dichlorofluorescein negative staining are dyed to gel background, gel of getting along well On protein combine, protein structure is entirely unaffected by, so can be with the products instrument highly compatible such as LC-MS;
6) using safe: using the low dyestuff of toxicity, improving the safety of experimental implementation, environmental pollution is small;
7) at low cost.
Detailed description of the invention:
The chemical structure of Fig. 12 ', 7 '-dichlorofluorescein of.
Fig. 2 one on SDS-PAGE glue, (A) 2 ', 7 '-dichlorofluorescein negative staining, (B) eosin negative staining, (C) penta The comparison of dialdehyde argentation and the imidazoles negative staining sensitivity of (D) zinc.Eosin negative staining, glutaraldehyde argentation and zinc imidazoles negative staining Recorded according to document;Use the standard protein (SDS6H2) of Sigma company for sample.Band 1,50ng;Band 2,25ng;Band 3, 12.8ng;Band 4,6.4ng;Band 5,3.2ng;Band 6,1.6ng;Band 7,0.8ng;Band 8,0.4ng;Band 9,0.2ng;Band 10, 0.1ng。
Fig. 3 one on SDS-PAGE glue, (A, E) 2 ', 7 '-dichlorofluorescein negative staining, (B, F) eosin negative staining, The comparison of (C, G) glutaraldehyde argentation and the imidazoles negative staining sensitivity of (D, H) zinc.Separating sample is respectively e. coli total protein (A-D) and mouse brain total protein (E-H).Sample times times dilution from left to right.
For Fig. 4 two on SDS-PAGE glue, (A) 2 ', 7 '-dichlorofluorescein negative staining and (B) zinc imidazoles negative staining are sensitive The comparison of degree.Separate sample mouse brain total protein;IPG adhesive tape is 13 centimetres long, pH4-7;Resolving gel concentration is 11.4%;On sample Sample amount is 100 micrograms/adhesive tape.
Fig. 5 compares one (A) 2 ', 7 '-dichlorofluorescein negative staining and (B) zinc imidazoles negative staining on SDS-PAGE glue Examine the comparison of the range of linearity for the standard protein known.Standard protein is after dyeing, wherein 3 represent albumen β- Galactosidase, phosphorylase b and ovalbumin draw to obtain standard protein after the analysis of Image Lab image software The linearity curve of applied sample amount and band intensity.
Specific embodiment
Below with reference to specifically embodiment, the present invention is further explained.It should be appreciated that these embodiments are merely to illustrate The present invention, and cannot limit the scope of the invention.
The dyeing of embodiment 12 ', 7 '-dichlorofluorescein negative staining
Fig. 1 is the chemical structural formula of 2 ', 7 '-dichlorofluoresceins.
The 2 ' of Fig. 2~5, the experiment of 7 '-dichlorofluorescein protein negative staining are carried out using following step:
1) gel after electrophoresis is placed in 0.3%2 ', 7 '-dichlorofluoresceins/0.1% sodium carbonate/50% methanol dyeing liquor Middle dyeing 10min.
2) dyeing liquor is discarded, develop 2min in trisodium citrate (pH=4) developer solution of 1.4% citric acid/1%.
3) after gel-colored, under Epson V700 scanner, reverse scan Mode scans.
Protein staining is carried out with the sodium salt, sylvite, ammonium salt of 2 ', 7 '-dichlorofluoresceins respectively according to the method described above, as a result Show obtain the testing result similar to 2 ', 7 '-dichlorofluoresceins with these derivatives.
Fig. 2 is to illustrate one on SDS-PAGE, pair of 2 ', 7 '-dichlorofluorescein negative stainings and other decoration method effects Than using protein standard substance.
According to the method for embodiment 1, it is dyed using different methods, (A) 2 ', 7 '-dichlorofluorescein negative staining, (B) comparison of eosin negative staining, (C) glutaraldehyde argentation and the imidazoles negative staining sensitivity of (D) zinc.Eosin negative staining, glutaraldehyde Argentation and zinc imidazoles negative staining are recorded according to document;Use the standard protein (SDS6H2) of Sigma company for sample.Band 1,50ng;Band 2,25ng;Band 3,12.8ng;Band 4,6.4ng;Band 5,3.2ng;Band 6,1.6ng;Band 7,0.8ng;Band 8,0.4ng; Band 9,0.2ng;Band 10,0.1ng.As a result as shown in Fig. 2, 2 ', 7 '-dichlorofluorescein negative staining sensitivity highests.
Fig. 3 is to illustrate one on SDS-PAGE, pair of 2 ', 7 '-dichlorofluorescein negative stainings and other decoration method effects Than using E.coli total protein and mouse brain total protein.
The extracting method of E.coli total protein is as follows: taking E.coli bacterium solution, flora is collected by centrifugation in 12000rpm, is added Thallus is resuspended in the phosphate buffer (pH=7.0) of 0.02mol/L.Utilize Ultrasonic Cell Disruptor smudge cells.18000rpm centrifugation 30min collects supernatant to get E.coli gross protein extracting solution (crude protein product).Mouse brain total protein extraction method is as follows: Mice brain tissues are cleaned with 4 DEG C of PBS solution, are cleaned 3 times altogether.Tissue grinder is carried out with liquid nitrogen later, will be ground resulting Powder is fitted into the EP pipe weighed in advance.Lysate (9.5M urea, 0.1DTT, 2%CHAPS, 0.8% are added into EP pipe Pharmalyte pH3-10) extremely final concentration of 1mg/mL.Sample ultrasonic is crushed 3 times, 1 minute every time, after finishing 4 DEG C of high speed centrifugation 30min of 15000rpm, take supernatant.Above-mentioned E.coli and mouse brain total protein are divided through one to gel electrophoresis From rear, respectively with (A) 2 ', 7 '-dichlorofluorescein negative staining of embodiment 1, (B) eosin negative staining, (C) glutaraldehyde argentation and (D) zinc imidazoles negative staining is dyed, as a result as shown in Figure 3.2 ', 7 '-dichlorofluorescein negative stainings of display are a kind of operation letters It is single, the method for high sensitivity.
Fig. 4 is to illustrate two on SDS-PAGE, 2 ', 7 '-dichlorofluorescein negative stainings and zinc imidazoles negative staining effect Comparison, using being mouse brain total protein.
It is total to the mouse brain separated through two to gel electrophoresis with 2 ', 7 '-dichlorofluorescein negative stainings and zinc imidazoles negative staining Albumen is dyed, as a result as shown in Figure 4.The result shows that 2 ', 7 '-dichlorofluoresceins are negative for the zinc imidazoles negative staining that compares More protein spots can be detected in dye method, have higher sensitivity.
Fig. 5 illustrates that the linear dynamic range of 2 ', 7 '-dichlorofluorescein negative stainings and zinc imidazoles negative staining compares.
Three kinds of different molecular weights standard protein (β-galactosidase, phosphorylase b and Ovalbumin it) is separated in 10% polyacrylamide gel, through (A) 2 ', 7 '-dichlorofluorescein negative staining;(B) zinc imidazoles is negative Dye method, with the linearity curve of Image Lab image software analytical standard albumen applied sample amount and band intensity, to compare two kinds of dyes The range of linearity of color method.Standard protein applied sample amount range shows 2 ', 7 '-dichlorofluorescein negative staining by Fig. 5 for 0.1~50ng Method and zinc imidazoles negative staining have the consistent range of linearity.
Other colouring methods and pertinent literature in Fig. 2~5
Eosin negative staining operating method bibliography: Cong, W.T., Hwang, S.Y., Jin, L.T., He, H.Z., Choi, J.K., High-throughput negative detection of SDS-PAGE separated proteins And its application for proteomics.Electrophoresis 2010,3,411420.
Glutaraldehyde argentation operating method bibliography: Heukeshoven, D.J., Dernick, R., Simplified method for silver staining of proteins in polyacrylamide gels and the Mechanism of silver staining.Electrophoresis 1985,6,103-112.
Zinc imidazoles negative staining operating method bibliography: Castellanos-Serra, L., Proenza, W., Huerta, V., Moritz, R.L., Simpson, R.J., Proteome analysis of polyacrylamide gel-separated proteins visualized by reversible negative staining using imidazole-zinc Salts.Electrophoresis 1999,20,732-737.

Claims (4)

1. a kind of gel protein negative staining detection method comprising step:
1) protein example after SDS-PAGE electrophoresis is placed in 5~20min of dyeing in dyeing liquor, wherein dyeing liquor is containing weight Measure 2 ', 7 '-dichlorofluoresceins or derivatives thereof of volume ratio 0.05~1%, 0.05%~0.5% sodium carbonate and by volume 30%~70% methanol aqueous solution;Wherein the derivative is sodium salt, sylvite or the ammonium salt of 2 ', 7 '-dichlorofluoresceins;
2) 1~5min of developing liquid developing is added, wherein developer solution is the citric acid and 1% containing w/v 1.4% of pH=4 Trisodium citrate;
3) it detects.
2. the method as described in claim 1, which is characterized in that dyeing time is 10min in step 1), and dyeing liquor is containing weight 2 ', 7 '-dichlorofluoresceins of volume ratio 0.3%, 0.1% sodium carbonate and 50% methanol aqueous solution by volume.
3. the method as described in claim 1, which is characterized in that developing time is 2min in step 2).
4. the method as described in claim 1, which is characterized in that step 3) is detected as with the naked eye directly observing, or uses Epson V700 scanner reverse scan Mode scans.
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