CN106086063B - RNAi vector constructed based on isocaudarner and application thereof - Google Patents
RNAi vector constructed based on isocaudarner and application thereof Download PDFInfo
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Abstract
本发明公开了一种基于同尾酶构建的RNAi载体,其特征在于所述载体构建方法为:将靶向基因的目的片段导入过渡载体,构建获得可以产生发夹结构RNA的RNAi载体;本发明方法利用同尾酶的特性,只需要通过一次PCR扩增获得一段DNA片段,对该片段酶切一次,可以简化构建流程,提高构建效率。同时,该方法构建的RNAi载体中形成发夹结构(目的片段‑内含子‑反向重复目的片段)的部分只需要两个同尾酶酶切位点,这样可以预留出更多的单克隆位点,提高载体构建的灵活性。利用本方法构建的RNAi载体可被广泛用于多个物种基因的功能研究、遗传改造以及分子育种等,在基础研究和农业生产上都具有十分重要的价值。The invention discloses an RNAi vector constructed based on isocaudal enzyme, which is characterized in that the vector construction method is as follows: introducing a target fragment of a targeting gene into a transition vector, and constructing an RNAi vector capable of producing a hairpin structure RNA; The method utilizes the properties of isocaudal enzymes, and only needs to obtain a DNA fragment through one PCR amplification, and digest the fragment once, which can simplify the construction process and improve the construction efficiency. At the same time, the part of the RNAi vector constructed by this method that forms the hairpin structure (target fragment-intron-inverted repeat target fragment) only needs two isocaudal enzyme cleavage sites, which can reserve more single Cloning site to improve the flexibility of vector construction. The RNAi vector constructed by this method can be widely used in functional research, genetic modification and molecular breeding of genes of multiple species, and has very important value in basic research and agricultural production.
Description
(一)技术领域(1) Technical field
本发明涉及一种RNAi载体,特别涉及一种基于同尾酶构建的RNAi载体及其应用。The present invention relates to an RNAi carrier, in particular to an RNAi carrier constructed based on isocaudal enzyme and its application.
(二)背景技术(2) Background technology
RNA干扰(RNA interference,RNAi)是由靶基因同源双链RNA引发的在动植物中普遍存在的序列特异性转录后基因沉默(Hannon,(2002)Nature,418:244-251)。最早在植物体中发现,现已成为后基因组时代的重要研究手段。RNAi在植物功能基因组、生长发育、抗病毒、品质改良等方面都有重要的应用价值。RNA interference (RNAi) is a ubiquitous sequence-specific post-transcriptional gene silencing in animals and plants caused by homologous double-stranded RNA of target genes (Hannon, (2002) Nature, 418:244-251). It was first discovered in plants and has now become an important research method in the post-genome era. RNAi has important application value in plant functional genome, growth and development, anti-virus, quality improvement and so on.
在植物中,RNAi一般是通过具有双链RNA(dsRNA)的发夹结构RNA(hairpin RNA(hpRNA))来实现的(Waterhouse and Helliwell,(2003)Nat Rev Genet,4:29-38)。虽然,反义RNA介导的基因沉默作为一种RNAi现象已经广泛应用于植物基因功能分析,hpRNA介导的RNAi具有更高的效率(Chuang and Meyerowitz,(2000)P Natl Acad Sci USA 97:4985-4990)。产生hpRNA的载体通常是从靶标基因上克隆到一组反向互补的核苷酸序列,这一组序列中间由一段无关的间隔序列连接,然后用强启动子驱动表达。启动子可以是35S CaMV(多用于双子叶植物)或者maize ubiquitin 1(多用于单子叶植物)。反向互补序列中间的无关的间隔序列最好是内含子(Intron),这对反向重复序列在Escherichia coli中的稳定性以及在植物中的基因沉默效率的提高都十分重要(Smith et al.,(2000)Nature 407:319-320;Wesley et al.,(2001)Plant J 27:581-590)。上述产生hpRNA的载体稳定性和效率都比较高,但是载体构建起来也相对复杂,简单高效的产生hpRNA的载体构建方法亟待发现。In plants, RNAi is generally achieved by a hairpin RNA (hairpin RNA (hpRNA)) with double-stranded RNA (dsRNA) (Waterhouse and Helliwell, (2003) Nat Rev Genet, 4:29-38). Although antisense RNA-mediated gene silencing as an RNAi phenomenon has been widely used in plant gene function analysis, hpRNA-mediated RNAi has a higher efficiency (Chuang and Meyerowitz, (2000) P Natl Acad Sci USA 97:4985 -4990). The hpRNA-producing vector is usually cloned from the target gene into a set of reverse complementary nucleotide sequences, which are connected by an unrelated spacer sequence, and then driven by a strong promoter for expression. The promoter can be 35S CaMV (mostly used in dicotyledonous plants) or maize ubiquitin 1 (mostly used in monocotyledonous plants). The irrelevant spacer sequence in the middle of the reverse complement sequence is preferably an intron (Intron), which is very important for the stability of the inverted repeat sequence in Escherichia coli and the improvement of gene silencing efficiency in plants (Smith et al. ., (2000) Nature 407:319-320; Wesley et al., (2001) Plant J 27:581-590). The above-mentioned vectors for producing hpRNA are relatively high in stability and efficiency, but the construction of the vectors is relatively complicated, and a simple and efficient vector construction method for producing hpRNA needs to be discovered.
同尾酶是指能酶切产生相同的粘性末端的限制性内切酶。常用的同尾酶包括:BglII和BamHI,NheI和XbaI,SalI和XhoI等。这些同尾酶的特性可以用于简化产生hpRNA的RNAi载体的构建。Isocaudal enzymes refer to restriction endonucleases that can cleave to produce identical cohesive ends. Commonly used isocaudal enzymes include: BglII and BamHI, NheI and XbaI, SalI and XhoI, etc. The properties of these isocaudal enzymes can be used to simplify the construction of hpRNA-producing RNAi vectors.
(三)发明内容(3) Contents of the invention
本发明目的是提供一种基于同尾酶构建的RNAi载体及其应用,解决目前构建产生发夹RNA载体需要克隆多个目标片段(正向序列、反向序列、内含子)的技术问题。该方法只需要用PCR的方法克隆一个目的片段就可以构建出具有高干扰效率的RNAi载体。The purpose of the present invention is to provide an RNAi vector constructed based on isocaudal enzyme and its application, and to solve the technical problem that multiple target fragments (forward sequence, reverse sequence, intron) need to be cloned to construct a hairpin RNA vector at present. This method only needs to clone a target fragment by PCR to construct an RNAi vector with high interference efficiency.
本发明采用的技术方案是:The technical scheme adopted in the present invention is:
本发明提供一种基于同尾酶构建的RNAi载体,所述载体构建方法为:将靶向基因的目的片段导入过渡载体,构建获得可以产生发夹结构RNA的RNAi载体;The present invention provides an RNAi vector constructed based on isocaudal enzyme. The vector construction method is as follows: introducing a target fragment of a targeting gene into a transition vector, and constructing an RNAi vector capable of producing a hairpin structure RNA;
所述过渡载体中预置一个内含子和一个终止子,内含子的5’端依次设置同尾酶酶切位点A1、B1,3’端依次设置同尾酶酶切位点B2、A2,其中A1、A2为一组同尾酶酶切位点,B1、B2为另一组同尾酶酶切位点,字母本身没有含义,为了便于表述内含子两端设计的酶切位点来自两组同尾酶而命名;所述目的片段的5’端和3’端分别设置A1、B1或者A2、B2酶切位点;通过两次酶切、连接和转化反应,把目的片段分别连入内含子的5’端和3’端,形成“目的片段-内含子-反向重复目的片段-终止子”结构的DNA片段,再通过一次酶切、连接和转化反应把上述DNA片段连入预置有启动子的终载体中,或者DNA片段跟设计的启动子通过三段连接连入终载体,获得RNAi载体。An intron and a terminator are preset in the transition vector, the 5' end of the intron is sequentially set with homozygous enzyme cleavage sites A1, B1, and the 3' end is sequentially set with homozygous enzyme cleavage sites B2, A2, where A1 and A2 are a group of homozygous enzyme cleavage sites, B1 and B2 are another group of homozygous enzyme cleavage sites, the letters themselves have no meaning, in order to facilitate the expression of the enzyme cleavage sites designed at both ends of the intron The points are named from two groups of homologous enzymes; the 5' end and 3' end of the target fragment are respectively set with A1, B1 or A2, B2 restriction sites; through two enzyme digestion, ligation and transformation reactions, the target fragment is The 5' end and 3' end of the intron are respectively connected to form a DNA fragment with the structure of "target fragment-intron-inverted repeat target fragment-terminator", and then the above-mentioned DNA fragments are digested, ligated and transformed by one time. The DNA fragment is ligated into the final vector with a preset promoter, or the DNA fragment and the designed promoter are ligated into the final vector through three-segment ligation to obtain an RNAi vector.
进一步,所述同尾酶为下列之一:(1)BglII和BamHI,(2)NheI和XbaI,(3)SalI和XhoI。也可以是其它具有类似属性的限制性内切酶。Further, the isocaudal enzyme is one of the following: (1) BglII and BamHI, (2) NheI and XbaI, (3) SalI and XhoI. Other restriction enzymes with similar properties can also be used.
进一步,所述内含子核苷酸序列为SEQ ID NO.1所示。Further, the intron nucleotide sequence is shown in SEQ ID NO.1.
进一步,所述终止子核苷酸序列为SEQ ID NO.2所示。Further, the nucleotide sequence of the terminator is shown in SEQ ID NO.2.
进一步,所述载体为pGEM-T easy Vector。Further, the vector is pGEM-T easy Vector.
进一步,所述终载体为双元载体pCambia1300-pZmUbi-G10。Further, the final vector is a binary vector pCambia1300-pZmUbi-G10.
进一步,所述基于同尾酶构建的RNAi载体构建方法为:Further, the described RNAi carrier construction method based on isocaudal enzyme construction is:
(1)以pGEM-T easy Vector为骨架,把内含子和终止子连入该载体中,同时在内含子两端分别依次设置A1、B1和B2、A2酶切位点,形成过渡载体1;(2)对PCR扩增获得两端分别设置有A1、B1或者A2、B2酶切位点的目的基因进行酶切回收,获得目的片段;(1) Take pGEM-T easy Vector as the backbone, connect the intron and terminator into the vector, and set the A1, B1 and B2, A2 enzyme cleavage sites respectively at both ends of the intron to form a transition vector 1; (2) Enzymatic digestion and recovery of the target gene with A1, B1 or A2, B2 restriction sites at both ends obtained by PCR amplification to obtain the target fragment;
(3)然后用设置在目的基因上的两个同尾酶对过渡载体1进行酶切回收,获得载体;(3) The transition vector 1 is then digested and recovered with two isocaudal enzymes arranged on the target gene to obtain a vector;
(4)把步骤(2)和步骤(3)回收的目的片段和载体连接、转化,获得含有一段目的基因的过渡载体2;(4) linking and transforming the target fragment recovered in step (2) and step (3) with the vector, to obtain a transition vector 2 containing a section of the target gene;
(5)再用设置有同目的基因酶切位点的对应同尾酶对过渡载体2进行酶切回收,并与步骤(2)中回收的目的片段进行连接转化,获得具有“目的片段-内含子-反向重复目的片段”结构的过渡载体3;(5) The transition vector 2 is digested and recovered with the corresponding homocaudal enzyme provided with the same target gene restriction site, and is ligated and transformed with the target fragment recovered in step (2) to obtain a target fragment with "target fragment-internal". The transition vector 3 of the structure of "intron-inverted repeat target fragment";
(6)最后将过渡载体3中的“目的片段-内含子-反向重复目的片段”结构连同终止子酶切回收后连入对应的终载体中,即获得RNAi载体。(6) Finally, the "target fragment-intron-inverted repeat target fragment" structure in the transition vector 3 is recovered together with the terminator enzyme digestion and then linked into the corresponding final vector, that is, the RNAi vector is obtained.
本发明还提供一种所述基于同尾酶构建的RNAi载体在基因转化中的应用。可以利用该方法构建产生发夹结构RNA的RNAi载体,通过转基因的方法导入植物或者动物细胞中,实现靶标基因的沉默。The present invention also provides an application of the RNAi vector constructed based on the isocaudal enzyme in gene transformation. This method can be used to construct an RNAi vector that produces a hairpin structure RNA, which can be transgenic into plant or animal cells to achieve silencing of the target gene.
本发明还提供一种所述基于同尾酶构建的RNAi载体在制备转基因植物中的应用。可以利用该方法构建RNAi载体,通过转基因的方法导入植物细胞中,获得靶标基因被沉默的转基因植株。该方法可以用于基因功能的研究,也可以用于抑制和沉默靶标基因的表达,改良作物性状。The present invention also provides an application of the RNAi vector constructed based on isocaudal enzyme in the preparation of transgenic plants. The RNAi vector can be constructed by this method and introduced into plant cells by transgenic method to obtain a transgenic plant whose target gene is silenced. This method can be used for the study of gene function, as well as for inhibiting and silencing the expression of target genes and improving crop traits.
与现有技术相比,本发明的有益效果主要体现在:Compared with the prior art, the beneficial effects of the present invention are mainly reflected in:
与目前已有的产生hpRNA的RNAi载体构建方法相比,本发明方法利用同尾酶的特性,只需要通过一次PCR扩增获得一段DNA片段,对该片段酶切一次,可以简化构建流程,提高构建效率。同时,该方法构建的RNAi载体中形成发夹结构(目的片段-内含子-反向重复目的片段)的部分只需要两个同尾酶酶切位点,这样可以预留出更多的单克隆位点,提高载体构建的灵活性。利用本方法构建的RNAi载体可被广泛用于多个物种基因的功能研究、遗传改造以及分子育种等,在基础研究和农业生产上都具有十分重要的价值。Compared with the existing RNAi vector construction methods for producing hpRNA, the method of the present invention utilizes the characteristics of isocaudal enzymes, and only needs to obtain a DNA fragment through one PCR amplification, and the fragment is digested once, which can simplify the construction process and improve the efficiency of the process. Build efficiency. At the same time, the part of the RNAi vector constructed by this method that forms a hairpin structure (target fragment-intron-inverted repeat target fragment) only needs two isocaudal enzyme cleavage sites, which can reserve more single Cloning site to improve the flexibility of vector construction. The RNAi vector constructed by this method can be widely used in functional research, genetic modification and molecular breeding of genes of multiple species, and has very important value in basic research and agricultural production.
(四)附图说明(4) Description of drawings
图1:基于同尾酶的RNAi载体构建技术方案示意图。Figure 1: Schematic diagram of the technical scheme for the construction of RNAi vectors based on isocaudal enzymes.
图2:pGEM-T-LOG-intron-Ter载体结构示意图。LOG-Intron为水稻LOG基因第二个内含子。LOG-Intron 5’端设置有4个酶切位点,分别为EcoRI、HindIII、BamHI、XhoI,其中EcoRI、HindIII用于终载体构建,BamHI、XhoI分别为两组同尾酶中的一个,用于连接目的片段;3’端依次设置有SalI和BglII酶切位点,SalI和BglII分别为XhoI和BamHI的同尾酶。ApaI和SacI之间为人工合成的终止子Ter。Figure 2: Schematic diagram of the pGEM-T-LOG-intron-Ter vector structure. LOG-Intron is the second intron of rice LOG gene. The 5' end of LOG-Intron is provided with 4 restriction sites, namely EcoRI, HindIII, BamHI, and XhoI, of which EcoRI and HindIII are used for final vector construction, and BamHI and XhoI are one of the two groups of isocaudal enzymes, respectively. To connect the target fragment; the 3' end is provided with SalI and BglII restriction sites in turn, and SalI and BglII are the homologous enzymes of XhoI and BamHI respectively. Between ApaI and SacI is a synthetic terminator Ter.
图3:接入目的片段的RNAi终载体中产生发夹结构的RNA部分的结构示意图。p35S:35S启动子;F:靶向目的基因的目的片段;LOG-Intron:水稻LOG基因第二个内含子;R:靶向目的基因的目的片段的反向重复序列;Ter:人工合成的终止子。把片段R连入载体后,酶切位点SalI和XhoI,BglII和BamHI连接后被钝化。Figure 3: Schematic diagram of the structure of the RNA part that generates the hairpin structure in the RNAi final vector with the target fragment inserted. p35S: 35S promoter; F: the target fragment targeting the target gene; LOG-Intron: the second intron of the rice LOG gene; R: the inverted repeat sequence of the target fragment targeting the target gene; Ter: artificially synthesized terminator. After the fragment R was ligated into the vector, the restriction sites SalI and XhoI, BglII and BamHI were ligated and blunted.
(五)具体实施方式(5) Specific implementation methods
下面结合具体实施例对本发明进行进一步描述,但本发明的保护范围并不仅限于此:The present invention is further described below in conjunction with specific embodiment, but the protection scope of the present invention is not limited to this:
实施例1、RNAi过渡载体构建Embodiment 1, RNAi transition vector construction
水稻LOG基因(gene="Os01g0588900")第2个内含子序列(核苷酸序列为SEQ IDNO.1所示)的获得:设计PCR引物LOG-intron-F:(5’GAATTCAAGCTTGGATCCCTCGAGTCAAGGATTTCGGGATGACC)和LOG-intron-R(5’ACATGGGCCCAGATCTGTCGACTGGTCGCCATGTCA TTGG),以商业水稻品种秀水134基因组为模板,通过PCR扩增获得大小为0.7kb的基因组片段。PCR反应条件为:95℃3分钟;95℃15秒,66℃15秒,72℃1分钟,重复33个循环;然后72℃10分钟。然后,把该片段克隆到pGEM-T easy Vector中,测序验证后保存,用于接下来的过渡载体构建。该载体命名为pGEM-T-LOG-intron。上述PCR获得的片段的5’端依次设置有EcoRI、HindIII、BamHI、XhoI酶切位点,其中EcoRI、HindIII用于终载体构建,BamHI、XhoI分别为两组同尾酶中的一个,用于连接目的片段;3’端依次设置有SalI、BglII、ApaI酶切位点,其中SalI和BglII分别为XhoI和BamHI的同尾酶,用于连接目的片段,ApaI用于接入终止子。Obtaining the second intron sequence (nucleotide sequence shown in SEQ ID NO.1) of rice LOG gene (gene="Os01g0588900"): Design PCR primers LOG-intron-F: (5'GAATTCAAGCTTGGATCCCTCGAGTCAAGGATTTCGGGATGACC) and LOG- intron-R (5'ACATGGGCCCAGATCTGTCGACTGGTCGCCATGTCA TTGG), using the genome of commercial rice variety Xiushui 134 as a template, a 0.7kb genome fragment was obtained by PCR amplification. PCR reaction conditions were: 95°C for 3 minutes; 95°C for 15 seconds, 66°C for 15 seconds, 72°C for 1 minute, repeating 33 cycles; then 72°C for 10 minutes. Then, the fragment was cloned into pGEM-T easy Vector, verified by sequencing, and saved for subsequent transition vector construction. The vector was named pGEM-T-LOG-intron. The 5' end of the fragment obtained by above-mentioned PCR is provided with EcoRI, HindIII, BamHI, XhoI restriction sites successively, wherein EcoRI and HindIII are used for final vector construction, and BamHI and XhoI are respectively one of two groups of homozygous enzymes, used for The target fragment is connected; the 3' end is sequentially provided with SalI, BglII, and ApaI restriction sites, wherein SalI and BglII are the homologous enzymes of XhoI and BamHI, respectively, for connecting the target fragment, and ApaI is used to access the terminator.
终止子为人工合成序列Ter(SEQ ID NO.2),5’端设置有ApaI酶切位点,3’端设置有KpnI和SacI酶切位点。The terminator is an artificial synthetic sequence Ter (SEQ ID NO. 2), the 5' end is provided with an ApaI restriction site, and the 3' end is provided with KpnI and SacI restriction sites.
含有内含子和终止子的过渡载体的构建:用EcoRI和ApaI对pGEM-T-LOG-intron进行双酶切,回收大小约为0.7kb的LOG-intron片段;用EcoRI和SacI对pGEM-T-LOG-intron进行双酶切,回收大小约为3.0kb的pGEM-T载体;用ApaI和SacI对人工合成后连入pUC57载体中的Ter进行酶切,回收终止子。然后,把上述回收到的载体和片段进行三段连接,获得的载体命名为pGEM-T-LOG-intron-Ter(图2),核苷酸序列如SEQ ID NO.3所示。Construction of transition vector containing intron and terminator: pGEM-T-LOG-intron was double digested with EcoRI and ApaI, and the LOG-intron fragment with a size of about 0.7kb was recovered; EcoRI and SacI were used for pGEM-T - LOG-intron was double digested to recover the pGEM-T vector with a size of about 3.0 kb; the artificially synthesized Ter that was linked into the pUC57 vector was digested with ApaI and SacI, and the terminator was recovered. Then, the recovered vector and fragment were connected in three sections, and the obtained vector was named pGEM-T-LOG-intron-Ter (Fig. 2), and the nucleotide sequence was shown in SEQ ID NO.3.
实施例2、沉默水稻OsTEL基因的RNAi载体的构建Example 2. Construction of RNAi vector for silencing rice OsTEL gene
水稻中的OsTEL(又命名为PLASTOCHRON2)基因编码一个RNA结合蛋白。Taiji等发现OsTEL基因发生功能缺失突变的水稻的叶片起始生长的速率加快,叶片成熟加快,且植株矮小,说明其有调控叶片起始和成熟的功能(Kawakatsu,(2006)The Plant Cell 18:612-625;Xiong et al.,(2006)Cell Research 16:267-276)。但是,由于上述突变体中OsTEL基因的功能完全缺失,无法观察OsTEL基因表达下调的表型,以及不同下调程度与表型的对应关系。因此,构建沉默OsTEL基因的RNAi载体可以帮助我们进一步研究OsTEL基因的功能。The OsTEL (also named PLASTOCHRON2) gene in rice encodes an RNA-binding protein. Taiji et al. found that the rice with loss-of-function mutation of OsTEL gene had faster leaf growth rate, faster leaf maturation, and dwarf plants, indicating that it has the function of regulating leaf initiation and maturation (Kawakatsu, (2006) The Plant Cell 18: 612-625; Xiong et al., (2006) Cell Research 16:267-276). However, since the function of OsTEL gene in the above mutants is completely absent, the phenotype of OsTEL gene expression down-regulation and the corresponding relationship between different down-regulation degrees and phenotypes cannot be observed. Therefore, the construction of RNAi vector to silence OsTEL gene can help us to further study the function of OsTEL gene.
OsTEL基因(gene="Os01g0907900")中靶标片段(核苷酸序列为SEQ ID NO.4所示)的获得:设计PCR引物OsTEL-RNAi-F:(5’GACCTCGAGGGCTTCAGCATCGTCGTCTACC)和OsTEL-RNAi-R(5’CTTGGATCCGTCCGTGAGCAGCT TGCCGT),以商业水稻品种秀水-134的总cDNA为模板,通过PCR扩增获得大小为0.7kb的片段。PCR反应条件为:95℃3分钟;95℃15秒,66℃15秒,72℃1分钟,重复33个循环;然后72℃10分钟。然后,把该片段克隆到pGEM-T easyVector中,测序验证后保存,用于接下来的过渡载体构建。上述PCR获得的片段的5’端设置有XhoI酶切位点,3’端设置有BamHI酶切位点。Obtainment of the target fragment (nucleotide sequence shown in SEQ ID NO. 4) in the OsTEL gene (gene="Os01g0907900"): Design PCR primers OsTEL-RNAi-F: (5'GACCTCGAGGGCTTCAGCATCGTCGTCTACC) and OsTEL-RNAi-R ( 5'CTTGGATCCGTCCGTGAGCAGCT TGCCGT), using the total cDNA of commercial rice variety Xiushui-134 as a template, a fragment with a size of 0.7kb was obtained by PCR amplification. PCR reaction conditions were: 95°C for 3 minutes; 95°C for 15 seconds, 66°C for 15 seconds, 72°C for 1 minute, repeating 33 cycles; then 72°C for 10 minutes. Then, the fragment was cloned into pGEM-T easyVector, verified by sequencing, and saved for subsequent transition vector construction. The 5' end of the fragment obtained by the above PCR is provided with an XhoI restriction site, and the 3' end is provided with a BamHI restriction site.
含有靶向OsTEL基因的目的片段的过渡载体的构建:Construction of the transition vector containing the target fragment targeting the OsTEL gene:
第一步:用BamHI和XhoI对连有靶向OsTEL基因的目的片段的pGEM-T easy Vector进行双酶切,回收该目的片段;The first step: use BamHI and XhoI to double-enzymatically digest the pGEM-T easy Vector with the target fragment targeting the OsTEL gene, and recover the target fragment;
第二步:用BglII和SalI对实施例1中构建好的pGEM-T-LOG-intron-Ter载体进行双酶切,回收载体片段;The second step: double-enzyme digestion was performed on the pGEM-T-LOG-intron-Ter vector constructed in Example 1 with BglII and SalI, and the vector fragments were recovered;
第三步:把上述回收到的目的片段和载体进行连接,构建好的载体命名为pGEM-T-LOG-intron-目的片段(反向重复)-Ter;The third step: connect the recovered target fragment and the vector, and the constructed vector is named pGEM-T-LOG-intron-target fragment (inverted repeat)-Ter;
第四步:BamHI和XhoI对pGEM-T-LOG-intron-目的片段(反向重复)-Ter载体进行双酶切,回收该载体片段,并与第一步中的片段进行连接,构建好的过渡载体命名为pGEM-T-目的片段-LOG-intron-目的片段(反向重复)-Ter。The fourth step: BamHI and XhoI double-enzymatically digest the pGEM-T-LOG-intron-target fragment (inverted repeat)-Ter vector, recover the vector fragment, and connect it with the fragment in the first step, the constructed The transition vector was named pGEM-T-target fragment-LOG-intron-target fragment (inverted repeat)-Ter.
靶向OsTEL基因的RNAi终载体的构建:Construction of RNAi final vector targeting OsTEL gene:
双元载体pCambia1300-pZmUbi-G10(Internationl Pat.No.PCT/CN2012/087069:SEQ ID NO.49)是基于pCambia1300修改而来的,该载体包含一个耐草甘膦基因(EPSPS),作为转化的标记基因。用BamHI和KpnI对pGEM-T-目的片段-LOG-intron-目的片段(反向重复)-Ter载体进行双酶切,获得含有“目的片段-LOG-intron-目的片段(反向重复)-Ter”结构的片段。人工合成35S启动子p35S(SEQ ID NO.5,经过HindIII和BamHI酶切),用于驱动上述片段的转录。把经过BamHI和KpnI双酶切的pCambia1300-pZmUbi-G10载体、以及酶切回收的“目的片段-LOG-intron-目的片段(反向重复)-Ter”结构片段、p35S进行三段连接,构建成终载体。载体T-DNA中包含如下基因结构:“p35S-目的片段-LOG-intron-目的片段(反向重复)-Ter-启动子-耐草甘膦基因”。这个载体命名为:pCambia1300-G10-OsTEL-RNAi(图3)。The binary vector pCambia1300-pZmUbi-G10 (Internationl Pat.No.PCT/CN2012/087069:SEQ ID NO.49) is modified from pCambia1300, and this vector contains a glyphosate-resistant gene (EPSPS) as a transformant marker gene. The pGEM-T-target fragment-LOG-intron-target fragment (inverted repeat)-Ter vector was double digested with BamHI and KpnI to obtain a target fragment containing "target fragment-LOG-intron-target fragment (inverted repeat)-Ter "fragment of the structure. The synthetic 35S promoter p35S (SEQ ID NO. 5, digested by HindIII and BamHI) was used to drive the transcription of the above fragment. The pCambia1300-pZmUbi-G10 vector digested by BamHI and KpnI, as well as the "target fragment-LOG-intron-target fragment (inverted repeat)-Ter" structural fragment and p35S recovered by enzyme digestion were connected in three sections to construct a final carrier. The vector T-DNA contains the following gene structure: "p35S-target fragment-LOG-intron-target fragment (inverted repeat)-Ter-promoter-glyphosate-tolerant gene". This vector was named: pCambia1300-G10-OsTEL-RNAi (Figure 3).
实施例3、沉默玉米Ms45基因的RNAi载体的构建Example 3. Construction of RNAi vector for silencing maize Ms45 gene
玉米的Ms45基因在顶花中特异性表达,该基因发生功能缺失突变的玉米植株雄性不育(Cigan et al.,2001)。只有构建一个高效的RNAi载体,把Ms45基因完全沉默,才能达到生产使用的标准。The maize Ms45 gene is specifically expressed in top flowers, and maize plants with loss-of-function mutations in this gene are male sterile (Cigan et al., 2001). Only by constructing a high-efficiency RNAi vector and completely silencing the Ms45 gene can the standard for production and use be met.
Ms45基因(GenBank:AF360356.1)中靶标片段(核苷酸序列为SEQ ID NO.6所示)的获得:设计PCR引物MS45-RNAi-F:(5’GGTGCTCGAGCTCTAGATTAGTAAAAAGGGAGAGAGAGAG)和MS45-RNAi-R(5’TGGATCCTGCAGGTTCCTCTTCTCCATGCTGGTGGAC),以商业玉米品种郑丹958的基因组为模板,通过PCR扩增获得大小为0.4kb的片段。PCR反应条件为:95℃3分钟;95℃15秒,66℃15秒,72℃30秒,重复33个循环;然后72℃10分钟。然后,把该片段克隆到pGEM-Teasy Vector中,测序验证后保存,用于接下来的过渡载体构建。上述PCR获得的片段的5’端设置有XhoI酶切位点,3’端设置有BamHI酶切位点。Acquisition of the target fragment (nucleotide sequence shown in SEQ ID NO. 6) in the Ms45 gene (GenBank: AF360356.1): Design PCR primers MS45-RNAi-F: (5'GGTGCTCGAGCTCTAGATTAGTAAAAAGGGAGAGAGAGAG) and MS45-RNAi-R ( 5'TGGATCCTGCAGGTTCCTCTTCTCCATGCTGGTGGAC), using the genome of the commercial maize variety Zhengdan 958 as a template, a fragment of 0.4 kb in size was obtained by PCR amplification. PCR reaction conditions were: 95°C for 3 minutes; 95°C for 15 seconds, 66°C for 15 seconds, 72°C for 30 seconds, repeating 33 cycles; then 72°C for 10 minutes. Then, the fragment was cloned into pGEM-Teasy Vector, verified by sequencing, and saved for subsequent transition vector construction. The 5' end of the fragment obtained by the above PCR is provided with an XhoI restriction site, and the 3' end is provided with a BamHI restriction site.
含有靶向Ms45基因的目的片段的过渡载体的构建:Construction of the transition vector containing the target fragment targeting the Ms45 gene:
第一步:用BamHI和XhoI对连有靶向Ms45基因的目的片段的pGEM-T easy Vector进行双酶切,回收该目的片段;The first step: use BamHI and XhoI to double-enzymatically digest the pGEM-T easy Vector with the target fragment targeting the Ms45 gene, and recover the target fragment;
第二步:用BglII和SalI对实施例1中构建好的pGEM-T-LOG-intron-Ter载体进行双酶切,回收载体片段;The second step: double-enzyme digestion was performed on the pGEM-T-LOG-intron-Ter vector constructed in Example 1 with BglII and SalI, and the vector fragments were recovered;
第三步:把上述回收到的目的片段和载体进行连接,构建好的载体命名为pGEM-T-LOG-intron-目的片段(反向重复)-Ter;The third step: connect the recovered target fragment and the vector, and the constructed vector is named pGEM-T-LOG-intron-target fragment (inverted repeat)-Ter;
第四步:BamHI和XhoI对pGEM-T-LOG-intron-目的片段(反向重复)-Ter载体进行双酶切,回收该载体片段,并与第一步中的片段进行连接,构建好的过渡载体命名为pGEM-T-目的片段-LOG-intron-目的片段(反向重复)-Ter。The fourth step: BamHI and XhoI double-enzymatically digest the pGEM-T-LOG-intron-target fragment (inverted repeat)-Ter vector, recover the vector fragment, and connect it with the fragment in the first step, the constructed The transition vector was named pGEM-T-target fragment-LOG-intron-target fragment (inverted repeat)-Ter.
靶向Ms45基因的RNAi终载体的构建:Construction of RNAi final vector targeting Ms45 gene:
双元载体pCambia1300-pZmUbi-G10(Internationl Pat.No.PCT/CN2012/087069:SEQ ID NO.49)是基于pCambia1300修改而来的,该载体包含一个耐草甘膦基因(EPSPS),作为转化的标记基因。对pGEM-T-目的片段-LOG-intron-目的片段(反向重复)-Ter载体进行酶切,获得含有“目的片段-LOG-intron-目的片段(反向重复)-Ter”结构的片段。人工合成35S启动子p35S(SEQ ID NO.5,经过HindIII和BamHI酶切),用于驱动上述片段的转录。把经过BamHI和KpnI双酶切的pCambia1300-pZmUbi-G10载体、以及酶切回收的“目的片段-LOG-intron-目的片段(反向重复)-Ter”结构片段、p35S进行三段连接,构建成终载体。载体T-DNA中包含如下基因结构:“p35S-目的片段-LOG-intron-目的片段(反向重复)-Ter-启动子-耐草甘膦基因”。这个载体命名为:pCambia1300-G10-Ms45-RNAi(图3)。The binary vector pCambia1300-pZmUbi-G10 (Internationl Pat.No.PCT/CN2012/087069:SEQ ID NO.49) is modified from pCambia1300, and this vector contains a glyphosate-resistant gene (EPSPS) as a transformant marker gene. The pGEM-T-target fragment-LOG-intron-target fragment (inverted repeat)-Ter vector was digested to obtain a fragment containing the structure of "target fragment-LOG-intron-target fragment (inverted repeat)-Ter". The synthetic 35S promoter p35S (SEQ ID NO. 5, digested by HindIII and BamHI) was used to drive the transcription of the above fragment. The pCambia1300-pZmUbi-G10 vector digested by BamHI and KpnI, as well as the "target fragment-LOG-intron-target fragment (inverted repeat)-Ter" structural fragment and p35S recovered by enzyme digestion were connected in three sections to construct a final carrier. The vector T-DNA contains the following gene structure: "p35S-target fragment-LOG-intron-target fragment (inverted repeat)-Ter-promoter-glyphosate-tolerant gene". This vector was named: pCambia1300-G10-Ms45-RNAi (Figure 3).
实施例4、水稻的转化Example 4. Transformation of rice
转基因水稻的获得方法是采用现有技术(卢雄斌,龚祖埙(1998)生命科学10:125-131;刘凡等(2003)分子植物育种1:108-115)。选取成熟饱满的“秀水134”种子去壳,诱导产生愈伤组织作为转化材料。取实施例2中构建好的载体分别进行农杆菌划板。挑单菌落接种,准备转化用农杆菌。将待转化的愈伤组织放入OD为0.6左右的重组农杆菌菌液中(重组农杆菌菌液的制备:将重组农杆菌接种至培养基,28℃培养至OD为0.6左右;培养基组成:3g/L K2HPO4、1g/L NaH2PO4、1g/L NH4Cl、0.3g/L MgSO4·7H2O、0.15g/L KCl、0.01g/LCaCl2、0.0025g/L FeSO4·7H2O、5g/L蔗糖、20mg/L乙酰丁香酮,溶剂为水,pH=5.8),让重组农杆菌结合到愈伤组织表面,然后把愈伤组织转移到共培养培养基(MS+2mg/L 2,4-D+30g/L葡萄糖+30g/L蔗糖+3g/L琼脂(sigma 7921)+20mg/L乙酰丁香酮)中,28℃共培养2-3天。用无菌水冲洗转化后的愈伤,转移到筛选培养基(MS+2mg/L 2,4-D+30g/L蔗糖+3g/L琼脂(sigma 7921)+20mg/L乙酰丁香酮+2mM草甘膦(Sigma))上,28℃筛选培养两个月(中间继代一次)。把筛选后生长活力良好的愈伤转移到预分化培养基(MS+0.1g/L肌醇+5mg/L ABA+1mg/L NAA+5mg/L 6-BA+20g/L山梨醇+30g/L蔗糖+2.5g/L gelrite)上28℃培养20天左右,然后将预分化好的愈伤组织移到分化培养基上,每天14小时光照分化发芽。2-3周后,把抗性再生植株转移到生根培养基(1/2MS+0.2mg/L NAA+20g/L蔗糖+2.5g/L gelrite)上壮苗生根,最后将再生植株洗去琼脂移植于温室,选择产量高、种子大或者生物量高等能够提高水稻产量的转基因株系,培育新品种。获得含上述转化载体的转基因水稻植株。The method of obtaining transgenic rice is to use the existing technology (Lu Xiongbin, Gong Zuxun (1998) Life Science 10: 125-131; Liu Fan et al. (2003) Molecular Plant Breeding 1: 108-115). The mature and plump "Xiushui 134" seeds were selected to be shelled, and callus was induced to be used as the transformation material. Take the vectors constructed in Example 2 and carry out Agrobacterium streaking respectively. Pick a single colony to inoculate and prepare for transformation with Agrobacterium. The callus to be transformed is put into the recombinant Agrobacterium liquid with an OD of about 0.6 (preparation of the recombinant Agrobacterium liquid: the recombinant Agrobacterium is inoculated into the medium, and cultivated at 28° C. to an OD of about 0.6; the medium consists of : 3g/LK 2 HPO 4 , 1g/L NaH 2 PO 4 , 1g/L NH 4 Cl, 0.3g/L MgSO 4 ·7H 2 O, 0.15g/L KCl, 0.01g/LCaCl 2 , 0.0025g/L FeSO 4 ·7H 2 O, 5g/L sucrose, 20mg/L acetosyringone, the solvent is water, pH=5.8), let the recombinant Agrobacterium bind to the surface of the callus, and then transfer the callus to the co-cultivation medium (MS+2mg/L 2,4-D+30g/L glucose+30g/L sucrose+3g/L agar (sigma 7921)+20mg/L acetosyringone), co-culture at 28°C for 2-3 days. The transformed calli were washed with sterile water and transferred to screening medium (MS+2mg/L 2,4-D+30g/L sucrose+3g/L agar (sigma 7921)+20mg/L acetosyringone+2mM Glyphosate (Sigma)), screen culture at 28°C for two months (one intermediate passage). Transfer the callus with good growth vigor after screening to pre-differentiation medium (MS+0.1g/L inositol+5mg/L ABA+1mg/L NAA+5mg/L 6-BA+20g/L sorbitol+30g/L) L sucrose + 2.5 g/L gelrite) were cultured at 28°C for about 20 days, and then the pre-differentiated callus was transferred to the differentiation medium, and differentiated and germinated by light for 14 hours a day. After 2-3 weeks, the resistant regenerated plants were transferred to rooting medium (1/2MS+0.2mg/L NAA+20g/L sucrose+2.5g/L gelrite) for strong seedlings and rooting, and finally the regenerated plants were washed off the agar Transgenic lines with high yield, large seeds or high biomass that can improve rice yield are selected for transplanting in the greenhouse, and new varieties are cultivated. A transgenic rice plant containing the above transformation vector is obtained.
实施例5、转基因水稻的鉴定Example 5. Identification of transgenic rice
水稻是自交系,我们用获得的目标基因转基因水稻品系和空载体对照品系的纯合子进行表型的分析和比较。Rice is an inbred line, and we used the obtained target gene transgenic rice line and the homozygote of the empty vector control line to analyze and compare the phenotype.
将实施例4获得的转基因水稻品系和非转基因受体品系的叶片数目和株高进行比较分析。The number of leaves and plant height of the transgenic rice line obtained in Example 4 and the non-transgenic recipient line were compared and analyzed.
我们获得的60个转pCambia1300-G10-OsTEL-RNAi载体的转基因品系(命名为OsTEL-i)中有45个品系和非转基因对照相比叶片起始发育速率和叶片成熟加快、株高变矮。We obtained 60 transgenic lines (named OsTEL-i) transfected with pCambia1300-G10-OsTEL-RNAi vector, 45 lines were faster than the non-transgenic control in terms of initial leaf development rate, leaf maturity, and plant height became shorter.
其中两个典型品系的叶片数目和株高的变化如下表所示。The changes in leaf number and plant height of two typical lines are shown in the table below.
表1:两个典型品系与非转基因对照品系的比较Table 1: Comparison of two representative lines with a non-transgenic control line
*表格中的参数都经过F-Test检验(P≤0.05),并且都是和对照相比差异在5%以上的。OsTEL-i为载体pCambia1300-G10-OsTEL-RNAi的T-DNA转化植株,其中OsTEL-i后面的编号(20,55)是对不同品系随机编号,用于区分不同的转化事件。*The parameters in the table are all tested by F-Test (P≤0.05), and the difference is more than 5% compared with the control. OsTEL-i is a T-DNA transformed plant of the vector pCambia1300-G10-OsTEL-RNAi, wherein the numbers (20, 55) behind OsTEL-i are random numbers for different lines to distinguish different transformation events.
实施例6、玉米的转化Example 6. Transformation of maize
玉米的转化技术已经比较成熟。参考文献如:Vladimir Sidorov&David Duncan(in M.Paul Scott(ed.),Methods in MolecularBiology:TransgenicMaize,vol:526;Yuji Ishida,Yukoh Hiei&Toshihiko Komari(2007)Agrobacterium-mediatedtransformation of maize.Nature Protoc ols 2:1614-1622。基本方法如下:The transformation technology of maize is relatively mature. References such as: Vladimir Sidorov & David Duncan (in M. Paul Scott (ed.), Methods in Molecular Biology: Transgenic Maize, vol: 526; Yuji Ishida, Yukoh Hiei & Toshihiko Komari (2007) Agrobacterium-mediated transformation of maize. Nature Protoc ols 2:1614- 1622. The basic method is as follows:
取授粉后8-10天的Hi-II玉米穗,收集所有的未成熟胚(大小为1.0-1.5mm)。将实施例3中构建的含有T-DNA载体转化农杆菌获得的重组农杆菌与未成熟胚在共培养培养基上(MS+2mg/L 2,4-D+30g/L蔗糖+3g/L琼脂(sigma 7921)+40mg/L乙酰丁香酮)共培养2-3天(22℃)。转移未成熟胚到愈伤诱导培养基上(MS+2mg/L2,4-D+30g/L蔗糖+2.5g/L gelrite+5mg/L AgNO3+200mg/L乙酰丁香酮),28℃暗培养10-14天。将所有的愈伤转到带有2mM草甘膦的筛选培养基(与愈伤诱导培养基相同)上,28℃暗培养2-3周。转移所有的组织到新鲜含2mM草甘膦的筛选培养基上,28℃暗培养2-3周。然后,转移所有筛选后成活的胚性组织到再生培养基(MS+30g/L蔗糖+0.5mg/L kinetin+2.5g/L gelrite+200mg/L乙酰丁香酮)上,28℃暗培养10-14天,每皿一个株系。转移胚性组织到新鲜的再生培养基上,26℃光照培养10-14天。转移所有发育完全的植株到生根培养基(1/2MS+20g/L蔗糖+2.5g/L gelrite+200mg/L乙酰丁香酮)上,26℃光照培养直到根发育完全。获得含上述转化载体的转基因玉米植株。Hi-II corn ears 8-10 days after pollination were taken and all immature embryos (1.0-1.5 mm in size) were collected. The recombinant Agrobacterium and immature embryos obtained by transforming Agrobacterium with the T-DNA vector constructed in Example 3 were cultured on a co-cultivation medium (MS+2mg/L 2,4-D+30g/L sucrose+3g/L Agar (sigma 7921) + 40 mg/L acetosyringone) was co-cultured for 2-3 days (22°C). Transfer immature embryos to callus induction medium (MS+2mg/L2,4-D+30g/L sucrose+2.5g/L gelrite+5mg/L AgNO 3 +200mg/L acetosyringone), dark at 28°C Culture for 10-14 days. All calli were transferred to selection medium (same as callus induction medium) with 2 mM glyphosate and cultivated in the dark at 28°C for 2-3 weeks. All tissues were transferred to fresh selection medium containing 2 mM glyphosate and incubated in the dark at 28°C for 2-3 weeks. Then, transfer all the viable embryogenic tissues after selection to regeneration medium (MS+30g/L sucrose+0.5mg/L kinetin+2.5g/L gelrite+200mg/L acetosyringone), and culture at 28°C in the dark for 10- 14 days, one strain per dish. Embryogenic tissue was transferred to fresh regeneration medium and incubated in the light at 26°C for 10-14 days. All fully developed plants were transferred to rooting medium (1/2MS+20g/L sucrose+2.5g/L gelrite+200mg/L acetosyringone) and cultivated in the light at 26°C until the roots were fully developed. Transgenic maize plants containing the above transformation vector are obtained.
实施例7、转基因玉米的鉴定Example 7. Identification of transgenic corn
我们使用人工授粉的方法对实施例6中获得的转基因玉米进行授粉和收获,然后对收获的T1代种子进行种植,用于观察和统计分析。We pollinated and harvested the transgenic maize obtained in Example 6 using the method of artificial pollination, and then planted the harvested T1 generation seeds for observation and statistical analysis.
我们获得的58个转pCambia1300-G10-Ms45-RNAi载体的转基因品系(命名为Ms45-i)中有28个品系完全雄性不育,20个部分雄性不育,10个育性与非转基因对照相当。Of the 58 transgenic lines we obtained (named Ms45-i) transfected with the pCambia1300-G10-Ms45-RNAi vector, 28 were completely male sterile, 20 were partially male sterile, and 10 had fertility comparable to the non-transgenic control .
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