CN106085974B - A kind of Zika virus pseudovirion particle and preparation method thereof - Google Patents
A kind of Zika virus pseudovirion particle and preparation method thereof Download PDFInfo
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Abstract
Description
技术领域technical field
本发明涉及一种寨卡病毒假病毒颗粒及其制备方法,属于生物技术领域。The invention relates to a Zika virus pseudovirion particle and a preparation method thereof, belonging to the field of biotechnology.
背景技术Background technique
寨卡病毒(Zika virus)是一种由蚊子传播的病毒,该病毒可能导致婴儿患上“小头症”。该病毒属于黄病毒科黄病毒属,单链RNA病毒,与登革热病毒属同源同宗。2015年,巴西有2700名婴儿怀疑患上小头症,其中29人死亡,主要集中在东北部,而2014年巴西只有147宗小头症个案。寨卡病毒首次被发现是在上世纪40年代的乌干达,之后一度在非洲流行。寨卡病毒之后流传到南太平洋和亚洲地区,近期刚刚流传到拉丁美洲。巴西在2015年4月出现第一例寨卡病毒,随后快速扩散到18个省份。对寨卡病毒诊断试剂的研制迫在眉睫,尤其是核酸诊断试剂的研制,这就需要用到内对照参考品。虽然,用真实病毒作为参考品更能真是的反应核酸诊断试剂的性能,但由于真实的寨卡病毒具有一定的传染性,易引起生物安全问题,且不易于保存和运输。若以裸露的RNA作为其参考品,由于环境中Rnase的大量存在,使得裸露的RNA不稳定,易被降解。这就需要一种具有耐Rnase特性的RNA,装甲RNA假病毒就是其中的一种。装甲RNA可将RNA包裹在MS2噬菌体的衣壳蛋白中,使RNA具有耐RNase特性,同时可以用来模拟真实样本的提取过程,且能实现大规模生产。Zika virus, a mosquito-borne virus, can cause "microcephaly" in babies. The virus belongs to the Flavivirus genus of the Flaviviridae family, a single-stranded RNA virus, and is homologous to the dengue virus. In 2015, there were 2,700 babies suspected of having microcephaly in Brazil, and 29 of them died, mainly in the northeast. In 2014, there were only 147 cases of microcephaly in Brazil. The Zika virus was first discovered in Uganda in the 1940s and was once endemic in Africa. Zika has since spread to the South Pacific and Asia, and has just recently spread to Latin America. In Brazil, the first case of Zika virus appeared in April 2015, and it quickly spread to 18 provinces. The development of Zika virus diagnostic reagents is imminent, especially the development of nucleic acid diagnostic reagents, which requires the use of internal control reference materials. Although using real viruses as reference products can truly reflect the performance of nucleic acid diagnostic reagents, the real Zika virus is infectious to a certain extent, which can easily cause biosafety problems, and is not easy to store and transport. If naked RNA is used as its reference product, the naked RNA is unstable and easily degraded due to the presence of a large number of RNases in the environment. This requires an RNA with RNase-resistant properties, and armored RNA pseudovirus is one of them. Armored RNA can wrap RNA in the capsid protein of MS2 bacteriophage, making RNA resistant to RNase, and can be used to simulate the extraction process of real samples and achieve large-scale production.
装甲RNA是一类包装有外源RNA的假病毒颗粒,一般采用MS2噬菌体包装系统。该系统制备假病毒颗粒简单,安全,制备周期短。主要是利用噬菌体的衣壳蛋白和成熟酶蛋白识别并包装含有MS2噬菌体识别序列的外源RNA并将其组装,形成成熟的假病毒颗粒。Armored RNA is a type of pseudovirion packaged with exogenous RNA, and the MS2 phage packaging system is generally used. The system prepares pseudovirion particles simply, safely, and has a short preparation period. It mainly uses the capsid protein and mature enzyme protein of the phage to recognize and package the foreign RNA containing the MS2 phage recognition sequence and assemble it to form mature pseudovirion particles.
发明内容Contents of the invention
本发明的一个目的是提供一种寨卡病毒假病毒颗粒。One object of the present invention is to provide a Zika virus pseudovirion.
本发明提供的寨卡病毒假病毒颗粒,为外壳蛋白包裹寨卡病毒NS5基因形成的假病毒颗粒;The Zika virus pseudovirus particle provided by the invention is a pseudovirus particle formed by encapsulating the Zika virus NS5 gene;
所述外壳蛋白由噬菌体MS2成熟酶和噬菌体MS2衣壳蛋白组成;The coat protein is composed of phage MS2 maturation enzyme and phage MS2 capsid protein;
所述寨卡病毒NS5基因的核苷酸序列为序列2第19-2727位。The nucleotide sequence of the Zika virus NS5 gene is the 19th-2727th position of sequence 2.
本发明另一个目的是提供一种制备上述寨卡病毒假病毒颗粒的方法。Another object of the present invention is to provide a method for preparing the above Zika virus pseudovirion.
本发明提供的方法,是采用MS2噬菌体包装系统包装寨卡病毒NS5基因,得到寨卡病毒假病毒颗粒;The method provided by the invention is to use the MS2 phage packaging system to package the Zika virus NS5 gene to obtain Zika virus pseudovirus particles;
所述寨卡病毒NS5基因的核苷酸序列为序列2第19-2727位。The nucleotide sequence of the Zika virus NS5 gene is the 19th-2727th position of sequence 2.
上述方法中,所述采用MS2噬菌体包装系统包装寨卡病毒NS5基因为在宿主菌中表达寨卡病毒NS5基因、噬菌体MS2成熟酶编码基因和噬菌体MS2衣壳蛋白编码基因,表达的噬菌体MS2衣壳蛋白会自动识别NS5基因上MS2包装位点,在成熟酶蛋白作用下进行病毒颗粒的包装,从而得到包装得到寨卡病毒假病毒颗粒。In the above method, said adopting the MS2 phage packaging system to package the Zika virus NS5 gene is to express the Zika virus NS5 gene, the phage MS2 maturation enzyme coding gene and the phage MS2 capsid protein coding gene in the host bacterium, and the expressed phage MS2 capsid The protein will automatically recognize the MS2 packaging site on the NS5 gene, and the virus particles will be packaged under the action of the mature enzyme protein, so as to obtain Zika virus pseudovirion particles after packaging.
寨卡病毒NS5基因以含有寨卡病毒NS5基因的片段的形式在宿主菌表达;含有寨卡病毒NS5基因的片段由MS2噬菌体包装位点识别片段和所述寨卡病毒NS5基因组成。The Zika virus NS5 gene is expressed in the host bacteria in the form of a fragment containing the Zika virus NS5 gene; the fragment containing the Zika virus NS5 gene is composed of an MS2 phage packaging site recognition fragment and the Zika virus NS5 gene.
所述寨卡病毒NS5基因的核苷酸序列为序列2第19-2727位。The nucleotide sequence of the Zika virus NS5 gene is the 19th-2727th position of sequence 2.
上述方法包括如下步骤:Above-mentioned method comprises the steps:
1)将含有寨卡病毒NS5基因的片段、噬菌体MS2成熟酶编码基因和噬菌体MS2衣壳蛋白编码基因导入宿主菌中,得到重组菌;1) Introducing a fragment containing the Zika virus NS5 gene, a phage MS2 maturation enzyme encoding gene and a phage MS2 capsid protein encoding gene into a host bacterium to obtain a recombinant bacterium;
所述含有寨卡病毒NS5基因的片段由MS2噬菌体包装位点识别片段和所述寨卡病毒NS5基因组成;The fragment containing the Zika virus NS5 gene is composed of an MS2 phage packaging site recognition fragment and the Zika virus NS5 gene;
2)诱导培养所述重组菌,即得到寨卡病毒假病毒颗粒。2) Inducing and culturing the recombinant bacteria to obtain Zika virus pseudovirion particles.
上述方法中,In the above method,
所述含有寨卡病毒NS5基因的片段通过重组载体A导入宿主菌中,The fragment containing the Zika virus NS5 gene is introduced into the host bacterium through the recombinant vector A,
所述重组载体A为将含有寨卡病毒NS5基因的片段插入表达载体得到的载体;The recombinant vector A is a vector obtained by inserting a fragment containing the Zika virus NS5 gene into an expression vector;
所述含有寨卡病毒NS5基因的片段为如下1)-3)中任一种:The fragment containing the Zika virus NS5 gene is any of the following 1)-3):
1)编码区为序列表中序列2所示的DNA分子;1) the coding region is the DNA molecule shown in sequence 2 in the sequence listing;
2)在严格条件下与1)限定的DNA序列杂交且编码具有相同功能蛋白质的DNA分子;2) A DNA molecule that hybridizes to the DNA sequence defined in 1) under stringent conditions and encodes a protein with the same function;
3)与1)限定的DNA序列至少具有70%、至少具有75%、至少具有80%、至少具有85%、至少具有90%、至少具有95%、至少具有96%、至少具有97%、至少具有98%或至少具有99%同源性且编码具有相同功能蛋白质的DNA分子;3) at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least DNA molecules having 98% or at least 99% homology and encoding proteins with the same function;
上述严格条件可为在6×SSC,0.5%SDS的溶液中,在65℃下杂交,然后用2×SSC,0.1%SDS和1×SSC,0.1%SDS各洗膜一次。The above-mentioned stringent conditions can be hybridization at 65° C. in a solution of 6×SSC, 0.5% SDS, and then wash the membrane once with 2×SSC, 0.1% SDS and 1×SSC, 0.1% SDS respectively.
所述噬菌体MS2成熟酶编码基因和噬菌体MS2衣壳蛋白编码基因通过重组载体B导入宿主菌中,The phage MS2 maturation enzyme coding gene and the phage MS2 capsid protein coding gene are introduced into the host bacterium through the recombinant vector B,
所述重组载体B为将含有噬菌体MS2成熟酶编码基因和噬菌体MS2衣壳蛋白编码基因的片段插入表达载体得到的载体;The recombinant vector B is a vector obtained by inserting a fragment containing a phage MS2 maturation enzyme coding gene and a phage MS2 capsid protein coding gene into an expression vector;
所述含有噬菌体MS2成熟酶编码基因和噬菌体MS2衣壳蛋白编码基因的片段为如下1)-3)中任一种:The fragment containing the phage MS2 maturation enzyme coding gene and the phage MS2 capsid protein coding gene is any one of the following 1)-3):
1)编码区为序列表中序列1所示的DNA分子;1) The coding region is the DNA molecule shown in sequence 1 in the sequence listing;
2)在严格条件下与1)限定的DNA序列杂交且编码具有相同功能蛋白质的DNA分子;2) A DNA molecule that hybridizes to the DNA sequence defined in 1) under stringent conditions and encodes a protein with the same function;
3)与1)限定的DNA序列至少具有70%、至少具有75%、至少具有80%、至少具有85%、至少具有90%、至少具有95%、至少具有96%、至少具有97%、至少具有98%或至少具有99%同源性且编码具有相同功能蛋白质的DNA分子。3) at least 70%, at least 75%, at least 80%, at least 85%, at least 90%, at least 95%, at least 96%, at least 97%, at least DNA molecules having 98% or at least 99% homology and encoding proteins with the same function.
上述方法中,In the above method,
所述重组载体A中的表达载体和所述重组载体B中的表达载体相同或不同。The expression vector in the recombinant vector A is the same as or different from the expression vector in the recombinant vector B.
上述方法中,In the above method,
所述重组载体B中的表达载体为pET-30a+;The expression vector in the recombinant vector B is pET-30a+;
所述重组载体A中的表达载体为pACYCDuet-1;The expression vector in the recombinant vector A is pACYCDuet-1;
所述宿主菌为大肠杆菌。The host bacteria is Escherichia coli.
上述方法中,In the above method,
所述步骤2)中,所述诱导培养后还包括如下步骤:将所述诱导培养后的菌体破碎,收集破碎产物上清液,得到寨卡病毒假病毒颗粒。In the step 2), after the induction culture, the following steps are further included: crushing the cells after the induction culture, collecting the supernatant of the crushed product, and obtaining Zika virus pseudovirion particles.
上述的寨卡病毒假病毒颗粒或上述的方法制备的寨卡病毒假病毒颗粒在作为用于寨卡病毒核酸检测试剂内的对照参考品中的应用也是本发明保护的范围;The application of the above-mentioned Zika virus pseudovirus particles or the Zika virus pseudovirus particles prepared by the above method as a reference product for Zika virus nucleic acid detection reagents is also within the protection scope of the present invention;
或上述的寨卡病毒假病毒颗粒或上述的方法制备的寨卡病毒假病毒颗粒在制备用于寨卡病毒核酸检测试剂中的应用也是本发明保护的范围。Or the application of the above-mentioned Zika virus pseudovirus particles or the Zika virus pseudovirus particles prepared by the above method in the preparation of Zika virus nucleic acid detection reagents is also within the protection scope of the present invention.
上述方法制备的寨卡病毒假病毒颗粒也是本发明保护的范围。Zika virus pseudovirus particles prepared by the above method are also within the protection scope of the present invention.
本发明的实验证明,本发明用表达噬菌体衣壳蛋白和成熟酶蛋白重组载体和表达寨卡病毒基因组部分片段的重组载体导入宿主菌,培养,包装得到寨卡病毒假病毒颗粒,为首次获得寨卡病毒假病毒颗粒。Experiments of the present invention prove that the present invention uses recombinant vectors expressing phage capsid protein and maturation enzyme protein and recombinant vectors expressing Zika virus genome partial fragments to introduce host bacteria, cultivate and package Zika virus pseudovirions, which is the first time to obtain Zika virus particles. Cavirus pseudovirion particles.
附图说明Description of drawings
图1为重组质粒pET-30a-MS2阳性克隆鉴定。Figure 1 shows the identification of positive clones of the recombinant plasmid pET-30a-MS2.
图2为重组质粒pACYCD-NS5的阳性克隆鉴定。Figure 2 is the positive clone identification of the recombinant plasmid pACYCD-NS5.
图3为寨卡病毒装甲RNA假病毒颗粒的RT-PCR与PCR实时荧光定量PCR。Figure 3 is the RT-PCR and PCR real-time fluorescent quantitative PCR of Zika virus armored RNA pseudovirion particles.
具体实施方式Detailed ways
下述实施例中所使用的实验方法如无特殊说明,均为常规方法。The experimental methods used in the following examples are conventional methods unless otherwise specified.
下述实施例中所用的材料、试剂等,如无特殊说明,均可从商业途径得到。The materials and reagents used in the following examples can be obtained from commercial sources unless otherwise specified.
下述实例中采用的菌种、质粒和试剂如下:The strains, plasmids and reagents used in the following examples are as follows:
质粒pACYCDuet-1购自Novagen公司。Plasmid pACYCDuet-1 was purchased from Novagen.
质粒pET-30a+购自Novagen公司。Plasmid pET-30a+ was purchased from Novagen.
产品菌株BL21(DE3),Top10购自Tiangen公司。Product strain BL21(DE3), Top10 were purchased from Tiangen Company.
限制性内切酶,DNA polymerase均购自NEB公司。Restriction endonuclease and DNA polymerase were purchased from NEB Company.
T4 DNA ligase,AMV逆转录酶购自于Promega公司。T4 DNA ligase and AMV reverse transcriptase were purchased from Promega.
质粒小提试剂盒,病毒RNA提取试剂盒均购自于Tiangen公司。The plasmid mini-extraction kit and viral RNA extraction kit were purchased from Tiangen Company.
实施例1、表达MS2噬菌体衣壳蛋白基因和成熟酶蛋白基因的重组载体pET-30a-MS2的构建Embodiment 1, the construction of the recombinant vector pET-30a-MS2 expressing MS2 bacteriophage capsid protein gene and mature enzyme protein gene
一、MS2噬菌体衣壳蛋白和成熟酶蛋白基因序列的扩增1. Amplification of MS2 bacteriophage capsid protein and mature enzyme protein gene sequences
以质粒pMS27(该质粒购自Department of Biomedical Molecular Biology,GhentUniversity,货号:LMBP05349)为模板,用下面的MS2上游引物和MS2下游引物进行PCR扩增,得到PCR产物,得到含有MS2噬菌体的衣壳蛋白基因和成熟酶蛋白基因的DNA片段。Using the plasmid pMS27 (the plasmid was purchased from the Department of Biomedical Molecular Biology, GhentUniversity, Cat. No.: LMBP05349) as a template, use the following MS2 upstream primers and MS2 downstream primers to perform PCR amplification to obtain PCR products and obtain capsid proteins containing MS2 phage DNA fragments of gene and mature enzyme protein gene.
MS2上游引物:5’-catgCCATGGtgcgagcttttagtacccttgatag-3’MS2 upstream primer: 5'- catg CCATGG tgcgagcttttagtacccttgatag-3'
MS2下游引物:5’-gcgcAAGCTTtggccggcgtctattagtagatgc-3’MS2 downstream primer: 5'-gcgc AAGCTT tggccggcgtctattagtagatgc-3'
扩增体系:50μl体系扩增4管,5*Buffer 10μl,DNA聚合酶0.5μl,dNTP 1μl,上游引物1μl,下游引物1μl,模板pMS27 1μl,ddH2O 35.5μlAmplification system: 4 tubes of 50 μl system amplification, 10 μl of 5*Buffer, 0.5 μl of DNA polymerase, 1 μl of dNTP, 1 μl of upstream primer, 1 μl of downstream primer, 1 μl of template pMS27, 35.5 μl of ddH2O
扩增程序:98℃5min;98℃30s,58℃30s,72℃60s;重复步骤2-440个循环,72℃10min,12℃5min。Amplification program: 98°C for 5min; 98°C for 30s, 58°C for 30s, 72°C for 60s; repeat steps 2-440 cycles, 72°C for 10min, 12°C for 5min.
将PCR产物进行琼脂糖凝胶电泳,大小为1611bp,与预期相符。回收目的条带。The PCR product was subjected to agarose gel electrophoresis, and the size was 1611bp, which was consistent with the expectation. Recycle the destination band.
将PCR产物送去测序,该PCR产物具有序列表中序列1所示的核苷酸。The PCR product was sent for sequencing, and the PCR product had the nucleotide shown in sequence 1 in the sequence listing.
序列表中序列1所示的DNA分子由MS2噬菌体成熟酶蛋白编码基因(第1-1182位核苷酸)和MS2噬菌体衣壳蛋白编码基因(第1183-1611位核苷酸)组成。The DNA molecule shown in sequence 1 in the sequence listing consists of the MS2 phage maturation enzyme protein coding gene (1-1182 nucleotides) and the MS2 phage capsid protein coding gene (1183-1611 nucleotides).
二、重组载体pET-30a-MS2的构建2. Construction of recombinant vector pET-30a-MS2
利用限制性内切酶BamH Ⅰ和HindⅢ双酶切扩增上述制备的PCR产物和载体pET-30a+,37℃酶切2小时,反应体系:BamH Ⅰ2μl,HindⅢ2μl,Buffer 4μl,上述一制备的PCR产物(或载体pET-30a+)32μl。Amplify the above-prepared PCR product and vector pET-30a+ with restriction endonucleases BamH Ⅰ and Hind Ⅲ, and digest at 37°C for 2 hours. Reaction system: 2 μl of BamH Ⅰ, 2 μl of HindⅢ, 4 μl of Buffer, the PCR product prepared above (or vector pET-30a+) 32 μl.
将酶切产物进行纯化,将纯化的目的片段和载体按以下体系进行酶连反应:T4DNALigase 0.5μl,T4DNA Ligase Buffer 1μl,目的片段5.5μl,pET-30a+3μl;22℃连接2h。取5μl连接产物与50μl Top10感受态细胞在冰上轻轻混匀,冰浴30min,42℃热激90s,立即置于冰上3min,加入800μl无抗性的LB培养基,37℃,150rpm孵育60min,将孵育后产物5000rpm离心4min,弃600μl上清,将剩余上清与菌体沉淀混匀,涂布含有kan抗性的LB固体平板,37℃,倒置过夜培养。结果:平板上长出细菌的单菌落,符合预期。The digested product was purified, and the purified target fragment and vector were subjected to enzyme ligation reaction in the following system: T4DNA Ligase 0.5μl, T4DNA Ligase Buffer 1μl, target fragment 5.5μl, pET-30a+3μl; ligation at 22°C for 2h. Take 5 μl of the ligation product and 50 μl of Top10 competent cells and mix gently on ice, ice bath for 30 minutes, heat shock at 42°C for 90 seconds, immediately place on ice for 3 minutes, add 800 μl of non-resistant LB medium, incubate at 37°C, 150 rpm After 60 minutes, the incubated product was centrifuged at 5000 rpm for 4 minutes, 600 μl of supernatant was discarded, the remaining supernatant was mixed with the cell pellet, and LB solid plate containing kan resistance was coated, and incubated overnight at 37°C upside down. Results: A single colony of bacteria grew on the plate, as expected.
挑取平板上的单菌落,重悬于20μl的生理盐水中,进行菌落PCR验证阳性克隆;Pick a single colony on the plate, resuspend it in 20 μl of normal saline, and perform colony PCR to verify positive clones;
扩增体系:20μl体系扩增8管,10*Buffer 1μl,Taq DNA聚合酶0.5μl,MgCl2 1.2μl,dNTP 1μl,上游引物0.5μl,下游引物0.5μl,单菌落重悬液1μl,ddH2O 13.3μlAmplification system: 8 tubes for 20μl system amplification, 1μl of 10*Buffer, 0.5μl of Taq DNA polymerase, 1.2μl of MgCl2, 1μl of dNTP, 0.5μl of upstream primer, 0.5μl of downstream primer, 1μl of single colony suspension, 13.3μl of ddH2O
扩增程序:95℃5min;95℃30s,58℃30s,72℃60s;重复步骤2-4 40个循环,72℃10min,12℃5min。Amplification program: 95°C for 5min; 95°C for 30s, 58°C for 30s, 72°C for 60s; repeat steps 2-4 for 40 cycles, 72°C for 10min, 12°C for 5min.
将扩增产物进行0.8%的琼脂糖凝胶电泳,结果如图1所示,扩增出目的条带的扩增出目的条带的送擎科公司进行测序,测序正确的为构建成功的阳性克隆,将该单菌落接种于10ml的Kan抗性的LB液体培养基,37℃,220rpm过夜培养。将培养的菌液收集至1.5ml离心管中,12000rpm离心2min,弃上清,收集菌体沉淀,按天根公司的质粒小提试剂盒进行质粒提取,即得到重组载体pET-30a-MS2。将重组质粒保存于-20℃,菌种保存于-80℃。The amplified product was subjected to 0.8% agarose gel electrophoresis, and the result is shown in Figure 1. The amplified target band was sent to Qingke Company for sequencing, and the sequence was correct for the successful construction For cloning, the single colony was inoculated in 10 ml of Kan-resistant LB liquid medium, and cultivated overnight at 37° C. and 220 rpm. Collect the cultured bacterial solution into a 1.5ml centrifuge tube, centrifuge at 12000rpm for 2min, discard the supernatant, collect the bacterial pellet, and extract the plasmid according to the plasmid mini-extraction kit from Tiangen Company to obtain the recombinant vector pET-30a-MS2. The recombinant plasmids were stored at -20°C, and the strains were stored at -80°C.
将重组载体pET-30a-MS2送去测序,其为将序列表中序列1所示的DNA分子替换载体pET-30a+的BamH Ⅰ和HindⅢ酶切位点间的DNA片段,得到的载体。The recombinant vector pET-30a-MS2 was sent for sequencing, which is a vector obtained by replacing the DNA fragment between the BamH I and Hind III restriction sites of the vector pET-30a+ with the DNA molecule shown in Sequence 1 in the sequence listing.
实施例2、表达寨卡病毒NS5基因的重组载体pACYCD-NS5载体的构建Example 2, Construction of recombinant vector pACYCD-NS5 vector expressing Zika virus NS5 gene
一、肠道基质蛋白基因序列的扩增1. Amplification of the intestinal matrix protein gene sequence
以含有肠道基质蛋白的克隆载体pUC-NS5(该质粒为生工生物公司合成,选取序列gi|226377833|)为模板,用下面的NS5上游引物和NS5下游引物进行PCR扩增,得到含有寨卡病毒NS5基因的片段。Using the cloning vector pUC-NS5 containing intestinal matrix protein (the plasmid was synthesized by Sangon Biotechnology Co., Ltd., and the sequence gi|226377833| was selected) as a template, the following NS5 upstream primers and NS5 downstream primers were used for PCR amplification to obtain A fragment of the Cavirus NS5 gene.
NS5上游引物:5’-cccAAGCTTccggaggatcaccacgggAGGTGGGACGGGAGAGACTCTG-3’NS5 upstream primer: 5'-ccc AAGCTT ccggaggatcaccacgggAGGTGGGACGGGAGAGACTCTG-3'
NS5下游引物:5’-cccCTCGAGccggaggatcaccacgggCTCGTCTGAATCAGATGTCGGCC-3’NS5 downstream primer: 5'-ccc CTCGAG ccggaggatcaccacgggCTCGTCTGAATCAGATGTCGGCC-3'
扩增体系:50μl体系扩增4管,5*Buffer 10μl,DNA聚合酶0.5μl,dNTP 1μl,上游引物1μl,下游引物1μl,模板1μl,ddH2O 35.5μlAmplification system: 4 tubes of 50μl system amplification, 5*Buffer 10μl, DNA polymerase 0.5μl, dNTP 1μl, upstream primer 1μl, downstream primer 1μl, template 1μl, ddH2O 35.5μl
扩增程序:98℃5min;98℃30s,58℃30s,72℃60s;重复步骤2-440个循环,72℃10min,12℃5min。Amplification program: 98°C for 5min; 98°C for 30s, 58°C for 30s, 72°C for 60s; repeat steps 2-440 cycles, 72°C for 10min, 12°C for 5min.
将PCR产物进行琼脂糖凝胶电泳,大小为2727bp,与预期相符。回收目的条带。The PCR product was subjected to agarose gel electrophoresis, and the size was 2727bp, which was consistent with the expectation. Recycle the destination band.
将PCR产物送去测序,该PCR产物具有序列表中序列2所示的核苷酸。The PCR product was sent for sequencing, and the PCR product had the nucleotide shown in sequence 2 in the sequence listing.
序列2所示的含有寨卡病毒NS5基因的片段由MS2噬菌体包装位点识别片段(序列2第1-18位)和寨卡病毒NS5基因(序列2第19-2727位)。The fragment containing the Zika virus NS5 gene shown in sequence 2 is recognized by the MS2 phage packaging site (position 1-18 in sequence 2) and the Zika virus NS5 gene (position 19-2727 in sequence 2).
二、重组载体pACYCD-NS5的构建2. Construction of recombinant vector pACYCD-NS5
利用限制性内切酶HindⅢ和Xho Ⅰ双酶切扩增的上述一制备的PCR产物(含有寨卡病毒NS5基因的片段)和载体pACYCDuet-1(购自Novagen公司,目录号:71147-3),37℃酶切2小时,反应体系:HindⅢ2μl,Xho Ⅰ2μl,Buffer 4μl,PCR产物(或载体pACYCDuet-1)32μl.The PCR product prepared above (containing the Zika virus NS5 gene fragment) and the vector pACYCDuet-1 (purchased from Novagen, catalog number: 71147-3) were amplified by restriction endonucleases HindⅢ and Xho I. , digestion at 37°C for 2 hours, reaction system: HindⅢ 2 μl, Xho Ⅰ 2 μl, Buffer 4 μl, PCR product (or vector pACYCDuet-1) 32 μl.
将酶切产物进行纯化,将纯化的目的片段和载体按以下体系进行酶连反应:T4DNALigase 0.5μl,T4DNA Ligase Buffer 1μl,目的片段5.5μl,pACYCDuet-1 3μl;22℃连接2h。取5μl连接产物与50μl Top10感受态细胞在冰上轻轻混匀,冰浴30min,42℃热激90s,立即置于冰上3min,加入800μl无抗性的LB培养基,37℃,150rpm孵育60min,将孵育后产物5000rpm离心4min,弃600μl上清,将剩余上清与菌体沉淀混匀,涂布含有Cm抗性的LB固体平板,37℃,倒置过夜培养。结果:平板上长出细菌的单菌落,符合预期。The digested product was purified, and the purified target fragment and vector were subjected to enzyme ligation reaction in the following system: T4DNA Ligase 0.5 μl, T4DNA Ligase Buffer 1 μl, target fragment 5.5 μl, pACYCDuet-1 3 μl; ligation at 22°C for 2 hours. Take 5 μl of the ligation product and 50 μl of Top10 competent cells and mix gently on ice, ice bath for 30 minutes, heat shock at 42°C for 90 seconds, immediately place on ice for 3 minutes, add 800 μl of non-resistant LB medium, incubate at 37°C, 150 rpm After 60 minutes, centrifuge the incubated product at 5000 rpm for 4 minutes, discard 600 μl of supernatant, mix the remaining supernatant with the cell pellet, spread the LB solid plate containing Cm resistance, and incubate overnight at 37°C upside down. Results: A single colony of bacteria grew on the plate, as expected.
挑取平板上的单菌落,重悬于20μl的生理盐水中,进行菌落PCR验证阳性克隆;采用分段式鉴定,同一菌株分别采用两对引物进行菌落PCR。Pick a single colony on the plate, resuspend it in 20 μl of normal saline, and perform colony PCR to verify positive clones; use segmented identification, and use two pairs of primers for colony PCR for the same strain.
扩增体系:20μl体系扩增8管,10*Buffer 2μl,Taq DNA聚合酶0.5μl,MgCl2 1.2μl,dNTP 1μl,上游引物0.5μl,下游引物0.5μl,单菌落重悬液1μl,ddH2O 13.3μlAmplification system: 8 tubes for 20μl system amplification, 2μl 10*Buffer, 0.5μl Taq DNA polymerase, 1.2μl MgCl2, 1μl dNTP, 0.5μl upstream primer, 0.5μl downstream primer, 1μl single colony suspension, 13.3μl ddH2O
扩增程序:95℃5min;95℃30s,58℃30s,72℃60s;重复步骤2-440个循环,72℃10min,12℃5min。Amplification program: 95°C for 5min; 95°C for 30s, 58°C for 30s, 72°C for 60s; repeat steps 2-440 cycles, 72°C for 10min, 12°C for 5min.
将扩增产物进行0.8%的琼脂糖凝胶电泳,结果如图2所示,两对引物扩增条带大小分别为1700bp和1200bp,结果符合预期。将扩增出目的条带送擎科公司进行测序,测序正确的为构建成功的阳性克隆,将该单菌落接种于10ml的Cm抗性的LB液体培养基,37℃,220rpm过夜培养。将培养的菌液收集至1.5ml离心管中,12000rpm离心2min,弃上清,收集菌体沉淀,按天根公司的质粒小提试剂盒进行质粒提取,即得到重组载体pACYCD-NS5。将重组质粒保存于-20℃,菌种保存于-80℃。The amplified products were subjected to 0.8% agarose gel electrophoresis, and the results are shown in Figure 2. The sizes of the amplified bands of the two pairs of primers were 1700bp and 1200bp respectively, and the results were in line with expectations. The amplified target band was sent to Qingke Company for sequencing. The correct sequenced clone was successfully constructed. The single colony was inoculated in 10ml of Cm-resistant LB liquid medium and cultivated overnight at 37°C and 220rpm. Collect the cultured bacterial solution into a 1.5ml centrifuge tube, centrifuge at 12000rpm for 2min, discard the supernatant, collect the bacterial pellet, and extract the plasmid according to the plasmid mini-extraction kit from Tiangen Company to obtain the recombinant vector pACYCD-NS5. The recombinant plasmids were stored at -20°C, and the strains were stored at -80°C.
将重组载体pACYCD-NS5送去测序,其为将序列表中序列2所示的含有寨卡病毒NS5基因的片段替换载体pACYCDuet-1的HindⅢ和Xho Ⅰ酶切位点间的DNA片段得到的载体。The recombinant vector pACYCD-NS5 was sent for sequencing, which is a vector obtained by replacing the DNA fragment between the Hind III and Xho I restriction sites of the vector pACYCDuet-1 with the fragment containing the Zika virus NS5 gene shown in Sequence 2 in the sequence listing .
实施例3、包装寨卡病毒假病毒Embodiment 3, packing Zika virus pseudovirus
一、重组菌的构建1. Construction of recombinant bacteria
分别取实施例1和实施例2中所构建的重组质粒pET-30a-MS2和pACYCD-NS5按5μl+5μl的体积混匀,取5μl加入到50μl的BL21(DE3)的感受态细胞中,用枪轻轻吹打混匀,置于冰上,冰浴30min,42℃热激90s,立即置于冰上3min,加入800μl无抗性的LB培养基,37℃恒温震荡培养箱,150rpm孵育60min,将孵育后产物5000rpm离心4min,弃600μl上清,将剩余上清与菌体沉淀混匀,涂布含有Cm和Kan抗性的LB固体平板,37℃,倒置过夜培养。结果:平板上长出细菌的单菌落,符合预期。Take the recombinant plasmids pET-30a-MS2 and pACYCD-NS5 constructed in Example 1 and Example 2 and mix them according to the volume of 5 μl+5 μl, take 5 μl and add it to 50 μl of BL21 (DE3) competent cells, use Gently blow and mix with the gun, place on ice, ice bath for 30min, heat shock at 42°C for 90s, immediately place on ice for 3min, add 800μl non-resistant LB medium, incubate at 37°C in a constant temperature shaking incubator, 150rpm for 60min, Centrifuge the incubated product at 5000rpm for 4min, discard 600μl supernatant, mix the remaining supernatant with the cell pellet, spread the LB solid plate containing Cm and Kan resistance, and incubate overnight at 37°C upside down. Results: A single colony of bacteria grew on the plate, as expected.
挑取平板上的单菌落,重悬于20μl的生理盐水中,进行菌落PCR验证阳性克隆,同时对MS2基因(引物为MS2上游引物和MS2下游引物,扩增产物大小为1611bp)和NS5基因(引物为NS5上游引物和NS5下游引物,扩增产物大小为2727bp)序列进行扩增。Pick a single colony on the plate, resuspend it in 20 μl of physiological saline, and carry out colony PCR to verify positive clones. At the same time, MS2 gene (primers are MS2 upstream primer and MS2 downstream primer, and the size of the amplified product is 1611bp) and NS5 gene ( The primers are NS5 upstream primer and NS5 downstream primer, and the size of the amplified product is 2727bp) sequence for amplification.
扩增体系:20μl体系扩增8管,10*Buffer 2μl,Taq DNA聚合酶0.5μl,MgCl2 1.2μl,dNTP 1μl,上游引物0.5μl,下游引物0.5μl,单菌落重悬液1μl,ddH2O 13.3μlAmplification system: 8 tubes for 20μl system amplification, 2μl 10*Buffer, 0.5μl Taq DNA polymerase, 1.2μl MgCl2, 1μl dNTP, 0.5μl upstream primer, 0.5μl downstream primer, 1μl single colony suspension, 13.3μl ddH2O
扩增程序:95℃5min;95℃30s,58℃30s,72℃60s;重复步骤2-4 40个循环,72℃10min,12℃5min。Amplification program: 95°C for 5min; 95°C for 30s, 58°C for 30s, 72°C for 60s; repeat steps 2-4 for 40 cycles, 72°C for 10min, 12°C for 5min.
将扩增产物进行0.8%的琼脂糖凝胶电泳,结果如图1,图2所示,图1为鉴定的MS2阳性克隆,图2为鉴定的NS5阳性克隆。扩增出目的条带的为构建成功的阳性克隆,将该单菌落接种于10ml的Cm和Kan抗性的LB液体培养基,37℃,220rpm培养。保存菌体,该菌命名为pET-30a-MS2-ACYCD-NS5,即为含有双载体的重组菌。The amplified product was subjected to 0.8% agarose gel electrophoresis, and the results are shown in Figure 1 and Figure 2, Figure 1 is the identified MS2 positive clone, and Figure 2 is the identified NS5 positive clone. The positive clones that amplified the target band were successfully constructed, and the single colony was inoculated in 10 ml of Cm and Kan resistant LB liquid medium, cultured at 37°C and 220rpm. The bacterium is preserved, and the bacterium is named pET-30a-MS2-ACYCD-NS5, which is a recombinant bacterium containing a double vector.
二、诱导表达包装得到寨卡病毒假病毒颗粒2. Induced expression and packaging to obtain Zika virus pseudovirion particles
将上述一制备的含有双载体的重组菌pET-30a-MS2-ACYCD-NS5进行平板划线,使其长出单菌落,挑取单菌落接种于Cm加Kan抗性的LB液体培养基,37℃,220rpm恒温振荡培养箱过夜培养。将过夜培养的菌液按1:100的比例接种于新的Cm加Kan抗性的的LB液体培养基,37℃,220rpm恒温振荡培养箱至OD600=0.4-0.6,加入0.5M的IPTG至终浓度为1mM,22℃,200rpm培养6h,收集菌体;Streak the recombinant bacteria pET-30a-MS2-ACYCD-NS5 prepared above and containing double vectors on the plate to make a single colony grow, pick a single colony and inoculate it in the LB liquid medium with Cm plus Kan resistance, 37 Cultivate overnight in a 220rpm constant temperature shaking incubator. Inoculate the overnight cultured bacterial solution in the new Cm plus Kan-resistant LB liquid medium at a ratio of 1:100, in a 37°C, 220rpm constant temperature shaking incubator to OD600=0.4-0.6, and add 0.5M IPTG to the final The concentration is 1mM, cultured at 22°C, 200rpm for 6h, and the bacteria are collected;
用裂解液(100mM Tris-HCl(pH8.0),10%甘油,1%Triton X-10)重悬菌体,置于冰水混合物中,使冰水混合物没过菌悬液液面,利用超声波细胞破碎仪对菌悬液进行菌体破碎;超声破碎参数为:超声3s,停留4s,破碎时间为15min,破碎功率为总功率的60%;将破碎后的溶液于12000rpm离心5min,收集上清液,得到寨卡病毒假病毒颗粒。Use lysate (100mM Tris-HCl (pH8.0), 10% glycerol, 1% Triton X-10) to resuspend the bacterial body, place in the ice-water mixture, make the ice-water mixture cover the liquid surface of the bacterial suspension, use Ultrasonic cell disruptor crushes the bacterial suspension; ultrasonic crushing parameters are: ultrasonic 3s, dwell 4s, crushing time 15min, crushing power 60% of the total power; centrifuge the crushed solution at 12000rpm for 5min, collect supernatant to obtain Zika virus pseudovirion particles.
三、假病毒颗粒的验证3. Verification of fake virus particles
将上述二制备的寨卡病毒假病毒颗粒进行核酸提取(按天根病毒RNA提取试剂盒进行提取),得到RNA。The Zika virus pseudovirion particles prepared in the above two steps were subjected to nucleic acid extraction (extracted according to the Tiangen virus RNA extraction kit) to obtain RNA.
以RNA为模板,用如下引物进行RT-PCR和PCR验证(7500real time PCR)。Using RNA as a template, RT-PCR and PCR verification (7500 real time PCR) were performed with the following primers.
引物为:ZK-NS5-F:AGGCATGGGGGAGGATTAGTThe primers are: ZK-NS5-F: AGGCATGGGGGAGGATTAGT
ZK-NS5-R:CCCATCCAATGGTCCTCGTTZK-NS5-R: CCCATCCAATGGTCCTCGTT
RT-PCR体系:20μl体系扩增,10*Buffer 2μl,AMV-RT 0.5μl,Taq DNA聚合酶0.5μl,MgCl2 1.2μl,dNTP 1μl,上游引物0.5μl,下游引物0.5μl,模板2μl,EvaGreen 0.6μl,ROX0.2μl,ddH2O 11μlRT-PCR system: 20 μl system amplification, 10*Buffer 2 μl, AMV-RT 0.5 μl, Taq DNA polymerase 0.5 μl, MgCl2 1.2 μl, dNTP 1 μl, upstream primer 0.5 μl, downstream primer 0.5 μl, template 2 μl, EvaGreen 0.6 μl, ROX 0.2μl, ddH2O 11μl
PCR扩增程序:50℃30min,95℃5min;95℃15s,58℃30s,68℃20s;重复步骤3-5 32个循环,68℃10min,12℃5min。PCR amplification program: 50°C for 30 min, 95°C for 5 min; 95°C for 15 s, 58°C for 30 s, 68°C for 20 s; repeat steps 3-5 for 32 cycles, 68°C for 10 min, 12°C for 5 min.
PCR体系:20μl体系扩增,10*Buffer 2μl,Taq DNA聚合酶0.5μl,MgCl21.2μl,dNTP1μl,上游引物0.5μl,下游引物0.5μl,模板2μl,EvaGreen 0.6μl,ROX 0.2μl,ddH2O 11.5μlPCR system: 20μl system amplification, 2μl 10*Buffer, 0.5μl Taq DNA polymerase, 1.2μl MgCl, 1μl dNTP, 0.5μl upstream primer, 0.5μl downstream primer, 2μl template, 0.6μl EvaGreen, 0.2μl ROX, 11.5μl ddH2O
RT-PCR扩增程序:95℃5min;95℃15s,58℃30s,68℃20s;重复步骤3-5 32个循环,68℃10min,12℃5min。RT-PCR amplification program: 95°C for 5min; 95°C for 15s, 58°C for 30s, 68°C for 20s; repeat steps 3-5 for 32 cycles, 68°C for 10min, 12°C for 5min.
扩增结果如图3所示,可以看出,得到寨卡病毒NS5片段,证明得到的假病毒颗粒为寨卡病毒假病毒颗粒。The amplification results are shown in Figure 3. It can be seen that the Zika virus NS5 fragment is obtained, which proves that the obtained pseudovirion particles are Zika virus pseudovirion particles.
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