CN104946774A - Method for gathering and detecting DON toxin production genes in corn - Google Patents
Method for gathering and detecting DON toxin production genes in corn Download PDFInfo
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Abstract
本发明属于生物技术领域,涉及一种玉米中DON毒素产毒基因富集及检测的方法。检测步骤包括:CTAB法提取总DNA;以所提DNA作为模板利用羧基磁性纳米颗粒对DON毒素产毒基因进行富集,再进行PCR扩增;PCR产物进行琼脂糖凝胶电泳检测是否有目标条带从而确定所检测玉米中是否含有DON毒素产毒基因。本发明用快速、简便的方法富集了粮食中的DON毒素产毒基因。可以减少其他环境因素对DON毒素产毒基因提取的干扰,有效对其进行富集,以便后续PCR检测。The invention belongs to the field of biotechnology and relates to a method for enriching and detecting DON toxin-producing genes in corn. The detection steps include: extracting total DNA by CTAB method; using the extracted DNA as a template to enrich DON toxin-producing genes with carboxyl magnetic nanoparticles, and then performing PCR amplification; agarose gel electrophoresis for PCR products to detect whether there are target strips Band to determine whether the detected maize contains DON toxin-producing genes. The invention enriches the DON toxin-producing gene in the grain by a fast and simple method. It can reduce the interference of other environmental factors on the extraction of DON toxin-producing genes, and effectively enrich them for subsequent PCR detection.
Description
技术领域technical field
本发明涉及磁性纳米颗粒富集玉米中DON毒素产毒基因以及后续检测的方法,属于生物技术领域。The invention relates to a method for enriching DON toxin-producing genes in maize with magnetic nanoparticles and subsequent detection, and belongs to the field of biotechnology.
背景技术Background technique
禾谷镰刀菌是一种广泛分布于温暖潮湿地区的真菌,可以引起麦类作物的根腐、苗腐和穗腐,也能引起玉米的穗腐和茎基腐。禾谷镰刀菌侵染小麦,引起小麦的赤霉病,是我国东北麦区和长江流域最主要的病害,近年来还有扩大蔓延的趋势。在粮食储藏过程中,尤其是在夏季高温潮湿的环境中,禾谷镰刀菌生长速度快,毒素会随着菌体的生长不断的累积。毒素累积量超过国家标准后粮食就不能被人畜食用,失去商品价值,需要另作处理。因此会造成巨大的经济损失。种子带菌是禾谷镰刀菌侵染禾谷类作物的一种重要方式,播种染菌种子增加了禾谷类作物感染赤霉病的几率,这会对粮食产量产生直接影响。Fusarium graminearum is a fungus widely distributed in warm and humid areas, which can cause root rot, seedling rot and ear rot of wheat crops, as well as ear rot and stem rot of corn. Fusarium graminearum infects wheat and causes scab of wheat. It is the most important disease in Northeast my country and the Yangtze River Basin, and it has a tendency to spread in recent years. In the process of grain storage, especially in the high temperature and humid environment in summer, Fusarium graminearum grows fast, and the toxin will accumulate continuously with the growth of the bacteria. When the accumulation of toxins exceeds the national standard, the food cannot be eaten by humans and animals, and loses its commodity value, so it needs to be processed separately. Therefore, huge economic losses will be caused. Seed borne fungus is an important way for Fusarium graminearum to infect cereal crops. Sowing contaminated seeds increases the probability of cereal crops being infected with head blight, which will have a direct impact on grain yield.
禾谷镰刀菌不同菌株(不同采集地、寄主、感染部位)产生毒素的种类和能力有很大的差异。但主要有两大类:单端孢霉烯族毒素化合物(Trichothecenes)和玉米赤霉烯酮(ZEN)。The types and abilities of toxins produced by different strains of Fusarium graminearum (different collection places, hosts, infection sites) are very different. But there are two main categories: Trichothecenes and Zearalenone (ZEN).
单端孢霉烯族毒素的基本结构为四环的倍半萜,其上的环氧集团是毒性的主要来源。根据特异功能基团的不同有A、B、C、D四种类型。A型和B型为天然污染的单端孢霉烯族毒素化合物。B型化合物中脱氧雪腐镰刀菌烯醇(DON)与雪腐镰刀菌烯醇(NIV)为其主要两种毒素。单端孢霉烯族毒素化合物的急性中毒症状表现为呕吐、恶心、眩晕、便血、手足发麻等。慢性中毒有基因毒性、细胞毒性和免疫毒性。The basic structure of trichothecenes is a tetracyclic sesquiterpene, and the epoxy group on it is the main source of toxicity. There are four types of A, B, C, and D according to the specific functional groups. Types A and B are naturally contaminating trichothecene compounds. Among the type B compounds, deoxynivalenol (DON) and nivalenol (NIV) are the main two toxins. Symptoms of acute poisoning of trichothecene compounds are vomiting, nausea, dizziness, blood in the stool, and numbness of hands and feet. Chronic poisoning includes genotoxicity, cytotoxicity and immunotoxicity.
目前检测粮食中DON毒素的方法主要有酶联免疫法和高效液相色谱法。酶联免疫法特异性强、灵敏度高,但酶联免疫吸附(ELISA)试剂盒以及检测设备较昂贵。高效液相色谱法灵敏度高、可以定量检测样品中的毒素含量,但操作过程较繁琐需要专业人员操作,另外检测设备价格昂贵无法用于基层粮库中粮食的检测。使用磁珠对DON产毒基因进行富集再利用聚合酶链式反应(PCR)方法检测毒素基因的方法目前国内外还没有相关报道。At present, the methods for detecting DON toxin in grain mainly include ELISA and high performance liquid chromatography. ELISA has strong specificity and high sensitivity, but enzyme-linked immunosorbent (ELISA) kits and detection equipment are more expensive. High-performance liquid chromatography has high sensitivity and can quantitatively detect the toxin content in samples, but the operation process is cumbersome and requires professionals to operate. In addition, the detection equipment is expensive and cannot be used for the detection of grain in grass-roots grain depots. The method of using magnetic beads to enrich DON toxin-producing genes and then using polymerase chain reaction (PCR) to detect toxin genes has not been reported at home and abroad.
发明内容Contents of the invention
本发明的目的是提供一种有效简便的方法快速、简便地富集了玉米中的DON毒素产毒基因并对其进行检测。可以减少其他环境因素对DON毒素产毒基因提取的干扰,有效对其进行富集,以便后续的PCR检测。The purpose of the present invention is to provide an effective and simple method to quickly and easily enrich and detect DON toxin-producing genes in maize. It can reduce the interference of other environmental factors on the extraction of DON toxin-producing genes, and effectively enrich them for subsequent PCR detection.
一种玉米中DON毒素产毒基因富集及检测的方法,其特征在于,检测步骤包括:十六烷基三甲基溴化铵(CTAB)法提取总DNA;以所提DNA作为模板利用羧基磁性纳米颗粒对DON毒素产毒基因进行富集,再进行PCR扩增;PCR产物进行琼脂糖凝胶电泳检测是否有目标条带从而确定所检测玉米中是否含有DON毒素产毒基因。A method for enriching and detecting DON toxin-producing genes in corn, characterized in that the detection steps include: extracting total DNA by the cetyltrimethylammonium bromide (CTAB) method; using the extracted DNA as a template using carboxyl Magnetic nanoparticles enrich DON toxin-producing genes, and then perform PCR amplification; PCR products are subjected to agarose gel electrophoresis to detect whether there is a target band to determine whether the tested corn contains DON toxin-producing genes.
所述的检测方法,具体步骤如下:Described detection method, concrete steps are as follows:
1.总DNA的提取:1. Extraction of total DNA:
a.玉米样品15000-25000rpm粉碎1-5min。a. Corn samples were crushed at 15000-25000rpm for 1-5min.
b.取1-5g样品粉末于离心管中,适量CTAB提取缓冲液,60-70℃水浴15-25min;b. Take 1-5g sample powder in a centrifuge tube, add appropriate amount of CTAB extraction buffer, and bathe in 60-70°C water bath for 15-25min;
c.冷却至室温,加入苯酚:氯仿:异戊醇(25:24:1),10,000-20,000rpm离心10-20min,得到上清液1;c. Cool to room temperature, add phenol:chloroform:isoamyl alcohol (25:24:1), centrifuge at 10,000-20,000rpm for 10-20min, and obtain supernatant 1;
d.c步骤得到上清液1加入1/10体积的10%CTAB-0.7M NaCl,再加入等体积的氯仿:异戊醇(24:1),10,000-20,000rpm离心10-20min,得到上清液2;Step d.c to obtain the supernatant 1, add 1/10 volume of 10% CTAB-0.7M NaCl, then add an equal volume of chloroform:isoamyl alcohol (24:1), centrifuge at 10,000-20,000rpm for 10-20min to obtain the supernatant 2;
e.d步骤得到上清液2上层水相加入等体积的冰冻异丙醇,3,000-5,000rpm离心10-20min,去上清,加入70%乙醇,其间换洗70%乙醇2-3次;Step e.d to obtain the supernatant 2, add an equal volume of frozen isopropanol to the upper aqueous phase, centrifuge at 3,000-5,000 rpm for 10-20 minutes, remove the supernatant, add 70% ethanol, and change and wash the 70% ethanol 2-3 times;
f.倒掉70%乙醇,风干后用适量三羟甲基氨基甲烷-乙二胺四乙酸(TE)缓冲液溶解DNA,-20℃保存。f. Pour off 70% ethanol, air-dry and dissolve DNA with an appropriate amount of Tris-ethylenediaminetetraacetic acid (TE) buffer, and store at -20°C.
2.DON毒素产毒基因富集2. DON toxin gene enrichment
a.羧基磁性纳米颗粒100-500μL,磁性指套分离,弃上清;a. Carboxylated magnetic nanoparticles 100-500 μL, separated by magnetic finger cot, discarded supernatant;
b.加入100-500μL活化缓冲液洗涤磁性纳米颗粒,磁性指套分离,重复2-3次,弃上清;b. Add 100-500 μL of activation buffer to wash the magnetic nanoparticles, separate them with magnetic finger cots, repeat 2-3 times, and discard the supernatant;
c.加入100-200μL 1-(3-二甲氨基丙基)-3-乙基碳二亚胺盐酸盐(EDC)溶液和100-200μL N-羟基琥珀酰亚胺(NHS)溶液于离心管中,漩涡混匀,20-30℃活化30-60min,磁性指套分离,弃上清;c. Add 100-200 μL 1-(3-dimethylaminopropyl)-3-ethylcarbodiimide hydrochloride (EDC) solution and 100-200 μL N-hydroxysuccinimide (NHS) solution to centrifuge In the tube, vortex to mix, activate at 20-30°C for 30-60min, separate with magnetic finger cot, and discard the supernatant;
d.加入10-50μL氨基引物和100-180μL磷酸盐缓冲液(PBS)溶液(pH 8.0),轻柔混匀,20-30℃偶联1.5-2.5h,磁性指套分离,弃上清;d. Add 10-50 μL of amino primers and 100-180 μL of phosphate buffer saline (PBS) solution (pH 8.0), mix gently, couple at 20-30°C for 1.5-2.5 hours, separate with magnetic finger cots, and discard the supernatant;
e.加入100-500μL封闭缓冲液,重悬磁性纳米颗粒,20-30℃反应1-2h封闭磁性纳米颗粒表面未反应的活化羧基基团,磁性指套分离,弃上清;e. Add 100-500 μL of blocking buffer, resuspend the magnetic nanoparticles, react at 20-30°C for 1-2 hours to block the unreacted activated carboxyl groups on the surface of the magnetic nanoparticles, separate with magnetic finger cots, and discard the supernatant;
f.加入100-500μL PBS溶液(pH 7.2)洗涤2-3次,磁性指套分离,弃上清;f. Add 100-500 μL PBS solution (pH 7.2) to wash 2-3 times, separate with magnetic finger cot, and discard the supernatant;
g.加入150-200μL盐水柠檬酸钠(SSC)溶液,30-50μL甲酰胺溶液和30-50μL单链玉米基因组DNA,室温杂交20-40min,磁性指套分离,弃上清;g. Add 150-200 μL saline sodium citrate (SSC) solution, 30-50 μL formamide solution and 30-50 μL single-stranded corn genomic DNA, hybridize at room temperature for 20-40 minutes, separate with magnetic finger cots, and discard the supernatant;
h.加入100-500μL PBS溶液(pH 7.2)洗涤2-3次,磁性指套分离,弃上清;h. Add 100-500 μL PBS solution (pH 7.2) to wash 2-3 times, separate with magnetic finger cots, and discard the supernatant;
i.加入20-50μL双蒸水(ddH2O),94℃加热5min,上清液转移至另一离心管中-20℃保存。i. Add 20-50 μL of double-distilled water (ddH 2 O), heat at 94°C for 5 minutes, and transfer the supernatant to another centrifuge tube for storage at -20°C.
3.DON毒素产毒基因检测3. DON toxin production gene detection
a.PCR扩增体系:10×酶特异性反应扩增缓冲液(PCR Buffer)2.5μL;Mg2+(10μM)2.5μL;脱氧核糖核苷三磷酸(dNTPs)(2mM)2.5μL;DON毒素产毒基因引物上下游各0.5μL;DNA模板1.5μL;耐热DNA聚合酶(Taq酶)(5U/μL)0.3μL;双蒸水(ddH2O)14.7μL。引物序列为:上游引物:TACGTGAAACATTGTTGGC;下游引物:GGTGTCCCAGGATCTGCG。注:A为腺嘌呤;T为胸腺嘧啶;G为鸟嘌呤;C为胞嘧啶。a.PCR amplification system: 2.5 μL of 10×enzyme-specific reaction amplification buffer (PCR Buffer); 2.5 μL of Mg 2+ (10 μM); 2.5 μL of deoxyribonucleoside triphosphates (dNTPs) (2 mM); DON toxin 0.5 μL upstream and downstream primers for toxin-producing genes; 1.5 μL DNA template; 0.3 μL thermostable DNA polymerase (Taq enzyme) (5 U/μL); 14.7 μL double distilled water (ddH 2 O). The primer sequences are: upstream primer: TACGTGAAACATTGTTGGC; downstream primer: GGTGTCCCAGGATCTGCG. Note: A is adenine; T is thymine; G is guanine; C is cytosine.
b.反应条件:b. Reaction conditions:
c.琼脂糖凝胶电泳c. Agarose gel electrophoresis
PCR产物及核酸分子量参照物(DL 2000),在1%琼脂糖凝胶上稳压120-130V,电泳20-30min。若样品中有DON毒素产毒基因则会有237bp扩增产物。PCR products and nucleic acid molecular weight reference (DL 2000), on a 1% agarose gel with a constant voltage of 120-130V, electrophoresis for 20-30min. If there is a DON toxin-producing gene in the sample, there will be a 237bp amplification product.
所述的总DNA提取方法中,第b步CTAB缓冲液的成分为:100mM三羟甲基氨基甲烷-盐酸(Tris-HCl)(pH 8.0),20mM乙二胺四乙酸二钠(EDTA-Na),1.4mM NaCl,2%CTAB,2%β-巯基乙醇;In the described total DNA extraction method, the composition of the b step CTAB damping fluid is: 100mM Tris-hydrochloric acid (Tris-HCl) (pH 8.0), 20mM ethylenediaminetetraacetic acid disodium (EDTA-Na ), 1.4mM NaCl, 2% CTAB, 2% β-mercaptoethanol;
所述的总DNA提取方法中,第d步10%CTAB-0.7M NaCl的成分为:4.1%NaCl,10%CTAB;In the described total DNA extraction method, the composition of step d 10%CTAB-0.7M NaCl is: 4.1%NaCl, 10%CTAB;
所述的总DNA提取方法中,第f步TE缓冲液成分为:10mM Tris-HCl(pH8.0),l mM乙二胺四乙酸(EDTA)(pH 8.0)。In the described total DNA extraction method, the fth step TE buffer composition is: 10mM Tris-HCl (pH8.0), 1 mM ethylenediaminetetraacetic acid (EDTA) (pH 8.0).
所述的DON毒素产毒基因富集方法中,第b步活化缓冲液成分为:100mM 2-(N-吗啉)乙磺酸-水合物(MES)(pH 5.0),0.05%吐温-20(Tween20);In the described DON toxin-producing gene enrichment method, the components of the b-step activation buffer are: 100mM 2-(N-morpholine)ethanesulfonic acid monohydrate (MES) (pH 5.0), 0.05% Tween- 20 (Tween20);
所述的DON毒素产毒基因富集方法中,第c步EDC溶液和NHS溶液使用活化缓冲液作为分散剂;In the DON toxin-producing gene enrichment method, the EDC solution and the NHS solution in step c use an activation buffer as a dispersant;
所述的DON毒素产毒基因富集方法中,第d步氨基引物为PCR体系中DON毒素产毒基因上下游引物5’端连接上氨基基团In the method for enriching the DON toxin-producing gene, the amino primer in step d is the amino group connected to the 5' end of the upstream and downstream primers of the DON toxin-producing gene in the PCR system
所述的DON毒素产毒基因富集方法中,第d步PBS溶液(pH 8.0)加入0.05%Tween 20以提高分散性;In the DON toxin-producing gene enrichment method, step d adds 0.05% Tween 20 to the PBS solution (pH 8.0) to improve dispersibility;
所述的DON毒素产毒基因富集方法中,第e步封闭缓冲液成分为:PBS溶液(pH 7.2),1%牛血清白蛋白(BSA);In the described DON toxin-producing gene enrichment method, the components of the blocking buffer in step e are: PBS solution (pH 7.2), 1% bovine serum albumin (BSA);
所述的DON毒素产毒基因富集方法中,第g步SSC溶液成分为:3MNaCl,0.3M柠檬酸钠。In the method for enriching DON toxin-producing genes, the components of the SSC solution in step g are: 3M NaCl, 0.3M sodium citrate.
本发明用快速、简便的方法富集了玉米中的DON毒素产毒基因并对其进行检测。可以减少其他环境因素对DON毒素产毒基因提取的干扰,有效对其进行富集,以便后续PCR检测。The invention uses a fast and simple method to enrich and detect DON toxin-producing genes in maize. It can reduce the interference of other environmental factors on the extraction of DON toxin-producing genes, and effectively enrich them for subsequent PCR detection.
以下通过具体实施例具体详细说明发明的实施,目的在于帮助读者更好的理解本发明的实质,但不作为对本发明实施范围的限定。The implementation of the invention will be described in detail below through specific examples, the purpose of which is to help readers better understand the essence of the present invention, but not as a limitation to the implementation scope of the present invention.
具体实施方式detailed description
实施例1Example 1
1.玉米样品1总DNA的提取:1. Extraction of total DNA from corn sample 1:
a.玉米样品1 15,000rpm粉碎5min。a. Corn sample 1 was crushed at 15,000rpm for 5min.
b.取1.5g样品粉末于1.5mL离心管中,适量CTAB提取缓冲液,60℃水浴15min;b. Take 1.5g sample powder in a 1.5mL centrifuge tube, add an appropriate amount of CTAB extraction buffer, and bathe in 60°C water for 15 minutes;
c.冷却至室温后,加入苯酚:氯仿:异戊醇(25:24:1),10,000rpm离心20min;c. After cooling to room temperature, add phenol:chloroform:isoamyl alcohol (25:24:1), and centrifuge at 10,000rpm for 20min;
d.上层水相加入1/10体积的10%CTAB-0.7M NaCl,再加入等体积的氯仿:异戊醇(24:1),轻轻混匀,10,000rpm离心20min;d. Add 1/10 volume of 10% CTAB-0.7M NaCl to the upper aqueous phase, then add an equal volume of chloroform:isoamyl alcohol (24:1), mix gently, and centrifuge at 10,000rpm for 20min;
e.上层水相加入等体积的冰冻异丙醇,3,000rpm离心20min,去上清,加入70%乙醇浸泡DNA,其间换洗70%乙醇2-3次;e. Add an equal volume of frozen isopropanol to the upper aqueous phase, centrifuge at 3,000 rpm for 20 minutes, remove the supernatant, add 70% ethanol to soak the DNA, and change and wash the 70% ethanol 2-3 times;
f.倒掉70%乙醇,风干后用适量TE缓冲液溶解DNA,-20℃保存。f. Pour off 70% ethanol, dissolve DNA with appropriate amount of TE buffer after air drying, and store at -20°C.
2.DON毒素产毒基因富集2. DON toxin gene enrichment
a.羧基磁性纳米颗粒100μL,磁性指套分离,弃上清;a. 100 μL of carboxyl magnetic nanoparticles, separated by magnetic finger cot, and discarded the supernatant;
b.加入100μL活化缓冲液洗涤磁珠,磁性指套分离,重复2次,弃上清;b. Add 100 μL of activation buffer to wash the magnetic beads, separate them with magnetic finger cots, repeat twice, and discard the supernatant;
c.加入100μL EDC溶液和100μL NHS溶液于离心管中,漩涡混匀,20℃活化40min,磁性指套分离,弃上清;c. Add 100 μL EDC solution and 100 μL NHS solution to the centrifuge tube, vortex to mix, activate at 20°C for 40 minutes, separate with magnetic finger cot, and discard the supernatant;
d.加入10μL氨基引物和180μL PBS溶液(pH 8.0),20℃偶联2.5h,磁性指套分离,弃上清;d. Add 10 μL of amino primers and 180 μL of PBS solution (pH 8.0), couple at 20°C for 2.5 hours, separate with magnetic finger cots, and discard the supernatant;
e.加入100μL封闭缓冲液,重悬磁性纳米颗粒,20℃反应2h封闭磁性纳米颗粒表面未反应的活化羧基基团,磁性指套分离,弃上清;e. Add 100 μL of blocking buffer, resuspend the magnetic nanoparticles, react at 20°C for 2 hours to block the unreacted activated carboxyl groups on the surface of the magnetic nanoparticles, separate with magnetic finger cots, and discard the supernatant;
f.加入100μL PBS溶液(pH 7.2)洗涤3次,磁性指套分离,弃上清;f. Add 100 μL of PBS solution (pH 7.2) to wash 3 times, separate with magnetic finger cots, and discard the supernatant;
g.加入160μL SSC溶液,30μL甲酰胺溶液和30μL单链玉米基因组DNA,室温杂交20min,磁性指套分离,弃上清;g. Add 160 μL of SSC solution, 30 μL of formamide solution and 30 μL of single-stranded maize genomic DNA, hybridize at room temperature for 20 minutes, separate with magnetic finger cots, and discard the supernatant;
h.加入100μL PBS溶液(pH 7.2)洗涤3次,磁性指套分离,弃上清;h. Add 100 μL PBS solution (pH 7.2) to wash 3 times, separate with magnetic finger cots, and discard the supernatant;
i.加入30μL ddH2O,94℃加热5min,上清液转移至另一离心管中-20℃保存。i. Add 30 μL of ddH 2 O, heat at 94°C for 5 minutes, and transfer the supernatant to another centrifuge tube for storage at -20°C.
3.DON毒素产毒基因检测3. DON toxin production gene detection
a.PCR扩增体系:10×PCR Buffer 2.5μL;Mg2+(10μM)2.5μL;dNTPs(2mM)2.5μL;DON毒素产毒基因引物上下游各0.5μL;DNA模板1.5μL;Taq酶(5U/μL)0.3μL;ddH2O 14.7μL。。a.PCR amplification system: 10×PCR Buffer 2.5μL; Mg 2+ (10μM) 2.5μL; dNTPs (2mM) 2.5μL; DON toxin-producing gene primers upstream and downstream each 0.5μL; DNA template 1.5μL; Taq enzyme ( 5U/μL) 0.3 μL; ddH 2 O 14.7 μL. .
b.PCR反应条件:b. PCR reaction conditions:
c.琼脂糖凝胶电泳c. Agarose gel electrophoresis
PCR产物及核酸分子量参照物(DL 2000),在1%琼脂糖凝胶上稳压120V,电泳30min。The PCR product and nucleic acid molecular weight reference (DL 2000) were placed on a 1% agarose gel at a constant voltage of 120V and electrophoresed for 30 minutes.
实施例2Example 2
1.玉米样品2总DNA的提取:1. Extraction of total DNA from corn sample 2:
a.玉米样品2 20,000rpm粉碎3min。a. Corn sample 2 was crushed at 20,000rpm for 3min.
b.取3g样品粉末于1.5mL离心管中,适量CTAB提取缓冲液,65℃水浴20min;b. Take 3g of sample powder in a 1.5mL centrifuge tube, add an appropriate amount of CTAB extraction buffer, and bathe in water at 65°C for 20 minutes;
c.冷却至室温后,加入苯酚:氯仿:异戊醇(25:24:1),15,000rpm离心15min;c. After cooling to room temperature, add phenol:chloroform:isoamyl alcohol (25:24:1), and centrifuge at 15,000rpm for 15min;
d.上层水相加入1/10体积的10%CTAB-0.7M NaCl,轻轻混匀,再加入等体积的氯仿:异戊醇(24:1),15,000rpm离心15min;d. Add 1/10 volume of 10% CTAB-0.7M NaCl to the upper aqueous phase, mix gently, then add an equal volume of chloroform:isoamyl alcohol (24:1), and centrifuge at 15,000rpm for 15min;
e.上层水相加入等体积的冰冻异丙醇,4,000rpm离心15min,去上清,加入70%乙醇浸泡DNA,其间换洗70%乙醇2-3次;e. Add an equal volume of frozen isopropanol to the upper aqueous phase, centrifuge at 4,000 rpm for 15 minutes, remove the supernatant, add 70% ethanol to soak the DNA, and change and wash the 70% ethanol 2-3 times;
f.倒掉70%乙醇,风干后用适量TE缓冲液溶解DNA,-20℃保存。f. Pour off 70% ethanol, dissolve DNA with appropriate amount of TE buffer after air drying, and store at -20°C.
2.DON毒素产毒基因富集2. DON toxin gene enrichment
a.羧基磁性纳米颗粒300μL,磁性指套分离,弃上清;a. 300 μL of carboxyl magnetic nanoparticles, separated by magnetic finger cot, and discarded the supernatant;
b.加入300μL活化缓冲液洗涤磁珠,磁性指套分离,重复2次,弃上清;b. Add 300 μL of activation buffer to wash the magnetic beads, separate them with magnetic finger cots, repeat twice, and discard the supernatant;
c.加入150μL EDC溶液和150μL NHS溶液于离心管中,漩涡混匀,25℃活化40min,磁性指套分离,弃上清;c. Add 150 μL EDC solution and 150 μL NHS solution to the centrifuge tube, vortex to mix, activate at 25°C for 40 minutes, separate with magnetic finger cot, and discard the supernatant;
d.加入30μL氨基引物和140μL PBS溶液(pH 8.0),25℃偶联2h,磁性指套分离,弃上清;d. Add 30 μL of amino primers and 140 μL of PBS solution (pH 8.0), couple at 25°C for 2 hours, separate with magnetic finger cots, and discard the supernatant;
e.加入300μL封闭缓冲液,重悬磁性纳米颗粒,25℃反应1.5h封闭磁性纳米颗粒表面未反应的活化羧基基团,磁性指套分离,弃上清;e. Add 300 μL of blocking buffer, resuspend the magnetic nanoparticles, react at 25°C for 1.5 hours to block the unreacted activated carboxyl groups on the surface of the magnetic nanoparticles, separate with magnetic finger cots, and discard the supernatant;
f.加入300μL PBS溶液(pH 7.2)洗涤3次,磁性指套分离,弃上清;f. Add 300 μL PBS solution (pH 7.2) to wash 3 times, separate with magnetic finger cots, and discard the supernatant;
g.加入180μL SSC溶液,40μL甲酰胺溶液和40μL单链玉米基因组DNA,室温杂交35min,磁性指套分离,弃上清;g. Add 180 μL SSC solution, 40 μL formamide solution and 40 μL single-stranded maize genomic DNA, hybridize at room temperature for 35 minutes, separate with magnetic finger cots, and discard the supernatant;
h.加入300μL PBS溶液(pH 7.2)洗涤3次,磁性指套分离,弃上清;h. Add 300 μL PBS solution (pH 7.2) to wash 3 times, separate with magnetic finger cot, and discard the supernatant;
i.加入40μL ddH2O,94℃加热5min,上清液转移至另一离心管中-20℃保存。i. Add 40 μL of ddH 2 O, heat at 94°C for 5 minutes, and transfer the supernatant to another centrifuge tube for storage at -20°C.
3.DON毒素产毒基因检测3. DON toxin production gene detection
a.PCR扩增体系:10×PCR Buffer 2.5μL;Mg2+(10μM)2.5μL;dNTPs(2mM)2.5μL;DON毒素产毒基因引物上下游各0.5μL;DNA模板1.5μL;Taq酶(5U/μL)0.3μL;ddH2O 14.7μL。a.PCR amplification system: 10×PCR Buffer 2.5μL; Mg 2+ (10μM) 2.5μL; dNTPs (2mM) 2.5μL; DON toxin-producing gene primers upstream and downstream each 0.5μL; DNA template 1.5μL; Taq enzyme ( 5U/μL) 0.3 μL; ddH 2 O 14.7 μL.
b.PCR反应条件:b. PCR reaction conditions:
c.琼脂糖凝胶电泳c. Agarose gel electrophoresis
PCR产物及核酸分子量参照物(DL 2000),在1%琼脂糖凝胶上稳压125V,电泳25min。The PCR product and nucleic acid molecular weight reference (DL 2000) were stabilized at 125V on 1% agarose gel, and electrophoresed for 25 minutes.
实施例3Example 3
1.玉米样品3总DNA的提取:1. Extraction of total DNA of corn sample 3:
a.玉米样品3 25,000rpm粉碎1min。a. Corn sample 3 25,000rpm crushed for 1min.
b.取5g样品粉末于1.5mL离心管中,适量CTAB提取缓冲液,70℃水浴15min;b. Take 5g of sample powder in a 1.5mL centrifuge tube, add an appropriate amount of CTAB extraction buffer, and bathe in 70°C water for 15 minutes;
c.冷却至室温后,加入苯酚:氯仿:异戊醇(25:24:1),20,000rpm离心10min;c. After cooling to room temperature, add phenol:chloroform:isoamyl alcohol (25:24:1), and centrifuge at 20,000rpm for 10min;
d.上层水相加入1/10体积的10%CTAB-0.7M NaCl,再加入等体积的氯仿:异戊醇(24:1),20,000rpm离心10min;d. Add 1/10 volume of 10% CTAB-0.7M NaCl to the upper aqueous phase, then add an equal volume of chloroform:isoamyl alcohol (24:1), and centrifuge at 20,000rpm for 10min;
e.上层水相加入等体积的冰冻异丙醇,5,000rpm离心10min,去上清,加入70%乙醇浸泡DNA,其间换洗70%乙醇2-3次;e. Add an equal volume of frozen isopropanol to the upper aqueous phase, centrifuge at 5,000 rpm for 10 minutes, remove the supernatant, add 70% ethanol to soak the DNA, and change and wash the 70% ethanol 2-3 times;
f.倒掉70%乙醇,风干后用适量TE缓冲液溶解DNA,-20℃保存。f. Pour off 70% ethanol, dissolve DNA with appropriate amount of TE buffer after air drying, and store at -20°C.
2.DON毒素产毒基因富集2. DON toxin gene enrichment
a.羧基磁性纳米颗粒500μL,磁性指套分离,弃上清;a. 500 μL of carboxyl magnetic nanoparticles, separated by magnetic finger cot, and discarded the supernatant;
b.加入500μL活化缓冲液洗涤磁珠,磁性指套分离,重复2次,弃上清;b. Add 500 μL of activation buffer to wash the magnetic beads, separate them with magnetic finger cots, repeat twice, and discard the supernatant;
c.加入200μL EDC溶液和200μL NHS溶液于离心管中,漩涡混匀,30℃活化30min,磁性指套分离,弃上清;c. Add 200 μL EDC solution and 200 μL NHS solution to the centrifuge tube, vortex to mix, activate at 30°C for 30 minutes, separate with magnetic finger cot, and discard the supernatant;
d.加入50μL氨基引物和100μL PBS溶液(pH 8.0),30℃偶联1.5h,磁性指套分离,弃上清;d. Add 50 μL of amino primers and 100 μL of PBS solution (pH 8.0), couple at 30°C for 1.5 h, separate with magnetic finger cots, and discard the supernatant;
e.加入500μL封闭缓冲液,重悬磁性纳米颗粒,30℃反应1h封闭磁性纳米颗粒表面未反应的活化羧基基团,磁性指套分离,弃上清;e. Add 500 μL of blocking buffer, resuspend the magnetic nanoparticles, react at 30°C for 1 hour to block the unreacted activated carboxyl groups on the surface of the magnetic nanoparticles, separate with magnetic finger cots, and discard the supernatant;
f.加入500μL PBS溶液(pH 7.2)洗涤3次,磁性指套分离,弃上清;f. Add 500 μL PBS solution (pH 7.2) to wash 3 times, separate with magnetic finger cot, and discard the supernatant;
g.加入200μL SSC溶液,50μL甲酰胺溶液和50μL单链基因组DNA,恒温杂交40min,磁性指套分离,弃上清;g. Add 200 μL SSC solution, 50 μL formamide solution and 50 μL single-stranded genomic DNA, hybridize at constant temperature for 40 minutes, separate with magnetic finger cots, and discard the supernatant;
h.加入500μL PBS溶液(pH 7.2)洗涤3次,磁性指套分离,弃上清;h. Add 500 μL PBS solution (pH 7.2) to wash 3 times, separate with magnetic finger cots, and discard the supernatant;
i.加入50ddH2O,94℃加热5min,上清液转移至另一离心管中-20℃保存。i. Add 50ddH 2 O, heat at 94°C for 5min, transfer the supernatant to another centrifuge tube and store at -20°C.
3.DON毒素产毒基因检测3. DON toxin production gene detection
a.PCR扩增体系:10×PCR Buffer 2.5μL;Mg2+(10μM)2.5μL;dNTPs(2mM)2.5μL;DON毒素产毒基因引物上下游各0.5μL;DNA模板1.5μL;Taq酶(5U/μL)0.3μL;ddH2O 14.7μL。a.PCR amplification system: 10×PCR Buffer 2.5μL; Mg 2+ (10μM) 2.5μL; dNTPs (2mM) 2.5μL; DON toxin-producing gene primers upstream and downstream each 0.5μL; DNA template 1.5μL; Taq enzyme ( 5U/μL) 0.3 μL; ddH 2 O 14.7 μL.
b.PCR反应条件:b. PCR reaction conditions:
c.琼脂糖凝胶电泳c. Agarose gel electrophoresis
PCR产物及核酸分子量参照物(DL 2000),在1%琼脂糖凝胶上稳压130V,电泳20min。The PCR product and nucleic acid molecular weight reference (DL 2000) were stabilized at 130V on 1% agarose gel and electrophoresed for 20 minutes.
三种玉米样品经粉碎机粉碎用CTAB法提取基因组DNA,然后运用羧基磁性纳米颗粒进行富集,再进行PCR检测DON毒素产毒基因。根据其基因组DNA的琼脂糖凝胶电泳结果显示,三种玉米都有20,000bp左右的条带,说明成功提取了基因组DNA。根据PCR得到的产物的琼脂糖凝胶电泳结果显示,玉米样品直接进行PCR,虽然可以扩增出DON毒素产毒基因,但是杂带较多,基因的条带比较模糊,会有拖带的情况发生,不利于后续的分析;而经过羧基磁性纳米颗粒进行富集后,扩增出的DON毒素产毒基因比较清晰,且不含有杂带,说明该方法可以有效地去除一些杂带,可以对DON毒素产毒基因进行富集纯化并且有利于后续的检测工作。Genomic DNA was extracted by CTAB method from three kinds of corn samples, then enriched by carboxyl magnetic nanoparticles, and then PCR was used to detect DON toxin-producing genes. According to the results of agarose gel electrophoresis of its genomic DNA, all three kinds of maize have bands of about 20,000 bp, indicating that the genomic DNA was successfully extracted. According to the results of agarose gel electrophoresis of the products obtained by PCR, the corn samples were directly subjected to PCR. Although the DON toxin-producing gene can be amplified, there are many miscellaneous bands, the bands of the gene are blurred, and there will be dragging. , which is not conducive to subsequent analysis; and after enrichment by carboxyl magnetic nanoparticles, the amplified DON toxin gene is relatively clear and does not contain miscellaneous bands, indicating that this method can effectively remove some miscellaneous bands, and can be used for DON The enrichment and purification of toxin-producing genes is beneficial to subsequent detection work.
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