CN104592200A - Chiral paramagnetic probe using 1,4,7,10-tetraazacyclododecane as skeleton - Google Patents
Chiral paramagnetic probe using 1,4,7,10-tetraazacyclododecane as skeleton Download PDFInfo
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Abstract
一种以1,4,7,10-四氮杂环十二烷为骨架的手性顺磁探针,其化学名称为1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶-2,3,4-三(S)-丙酸负离子-Tm3+配合物,化学分子式为C30H40N5O8STm,化学结构式为:。本发明的优点是:1)手性专一、构象单一,谱图只有一套峰,灵敏度高;2)高度化学选择性;3)电中性,对大分子影响小;4)水溶性好、配位点多、稳定性强、齿合度高;5)刚性极强,对大分子固定作用好;6)探针与蛋白质通过稳定的硫醚键连接,可以进行细胞内测量,这些优点使其能够对蛋白质的顺磁研究起到重要的推动作用。
A chiral paramagnetic probe with a skeleton of 1,4,7,10-tetraazacyclododecane, its chemical name is 1,4,7,10-tetraazacyclododecane-1- (2-Methyl-4-phenylsulfonyl-6-methylene)pyridine-2,3,4-tri(S)-propionic acid anion-Tm 3+ complex, the chemical formula is C 30 H 40 N 5 O 8 STm, the chemical structure formula is: . The advantages of the present invention are: 1) specific chirality, single conformation, only one set of peaks in the spectrum, high sensitivity; 2) high chemical selectivity; 3) electrical neutrality, little influence on macromolecules; 4) good water solubility , many coordination sites, strong stability, and high degree of toothing; 5) extremely rigid, and has a good immobilization effect on macromolecules; 6) the probe is connected to the protein through a stable thioether bond, which can be used for intracellular measurement. It can play an important role in promoting the paramagnetic research of proteins.
Description
技术领域 technical field
本发明属于化学生物学研究中的高性能探针,特别是一种以1,4,7,10-四氮杂环十二烷(cyclen)为骨架的手性顺磁探针。 The invention belongs to high-performance probes in chemical biology research, in particular to a chiral paramagnetic probe with 1,4,7,10-tetraazacyclododecane (cyclen) as the skeleton.
背景技术 Background technique
蛋白质空间结构是其生物功能的基础。顺磁效应下的核磁共振由于其独特的性质,近年来在生物大分子(如蛋白质、DNA、RNA等)的结构和功能研究中发挥着越来越强大的作用;顺磁效应能够提供其它技术手段难以获得的大分子长程结构信息;功能化的顺磁标签则是顺磁技术中修饰蛋白质最为重要的技术手段之一。 The spatial structure of proteins is the basis of their biological functions. Due to its unique properties, nuclear magnetic resonance under the paramagnetic effect has played an increasingly powerful role in the study of the structure and function of biological macromolecules (such as proteins, DNA, RNA, etc.) in recent years; the paramagnetic effect can provide other techniques Long-range structural information of macromolecules that is difficult to obtain by means; functionalized paramagnetic tags are one of the most important technical means for modifying proteins in paramagnetic technology.
顺磁标签的质量对利用顺磁核磁研究生物大分子的结构与动态学关系起着决定性的作用。顺磁标签一般均是一些具有双功能团的小分子探针,一端用于顺磁金属离子的螯合,另一端则用于与蛋白质连接。将顺磁标签与生物大分子连接后,利用顺磁效应可以揭示生物大分子的作用机制和作用构象变化、小分子与大分子作用的高分辨结构(参见:J. Biomol. NMR, 2010, 46: 101-112),这将对有效药物先导分子进行筛选与优化起到重要的导向作用。 The quality of the paramagnetic label plays a decisive role in the study of the structure and dynamics of biological macromolecules using paramagnetic NMR. Paramagnetic tags are generally some small molecular probes with dual functional groups, one end is used for chelation of paramagnetic metal ions, and the other end is used for linking with proteins. After linking the paramagnetic label to the biomacromolecule, the paramagnetic effect can be used to reveal the action mechanism and conformational changes of the biomacromolecule, and the high-resolution structure of the interaction between the small molecule and the macromolecule (see: J. Biomol. NMR , 2010 , 46 : 101-112), which will play an important guiding role in the screening and optimization of effective drug lead molecules.
一个好的标签通常需要需要满足以下条件:1)标签连接的刚性。当标签与顺磁金属离子结合后,若此顺磁标签和蛋白质的相对位置发生变化,会使PCS(贋接触化学位移)和RDC(残余偶极耦合)明显降低;2)光学纯度单一,金属离子和具有多个潜在手性中心的标签结合后,会产生对映异构体,导致出现多套NMR信号,进而使图谱变得复杂而难以解析;3)标签与蛋白链接的稳定性。 A good label usually needs to meet the following conditions: 1) The rigidity of the label connection. When the label is combined with a paramagnetic metal ion, if the relative position of the paramagnetic label and the protein changes, the PCS (pseudocontact chemical shift) and RDC (residual dipole coupling) will be significantly reduced; 2) The optical purity is single, and the metal The combination of ions and tags with multiple potential chiral centers will produce enantiomers, resulting in multiple sets of NMR signals, which will make the spectrum complex and difficult to interpret; 3) The stability of the tag and protein linkage.
Su等(Chembiochem, 2006, 7: 1599–1604.),首先用Ellman’s试剂5,5'-二硫代双(2-硝基苯甲酸)(DTNB)活化蛋白质的巯基形成二硫键,过量的DTNB通过透析除去;之后加入等量的标签,标签中的巯基即和活化的二硫键反应生成新的二硫键,最终把多肽标签和蛋白质连接起来(反应过程见图1)。离去的5-巯基-2-硝基苯甲酸(TNB)呈现明显黄色,这为反应过程的检测提供了很大的便利。这种标记方法产率较高(>70%),因为LBT多肽标签酸性很强,与蛋白质连接之后其pI值会明显改变,所以可以通过离子交换色谱柱将连接产物和未连接蛋白质分离。然而,二硫键不稳定,这阻碍了此类标签的广泛应用。 Su et al. ( Chembiochem , 2006 , 7: 1599–1604.), first activated the sulfhydryl group of the protein to form a disulfide bond with Ellman's reagent 5,5'-dithiobis(2-nitrobenzoic acid) (DTNB), and the excess DTNB is removed by dialysis; then an equal amount of label is added, and the sulfhydryl group in the label reacts with the activated disulfide bond to form a new disulfide bond, finally connecting the polypeptide label with the protein (see Figure 1 for the reaction process). The leaving 5-mercapto-2-nitrobenzoic acid (TNB) is obviously yellow, which provides great convenience for the detection of the reaction process. This labeling method has a high yield (>70%), because the LBT polypeptide label is very acidic, and its pI value will change significantly after linking to the protein, so the linking product and unlinked protein can be separated by an ion exchange column. However, disulfide bonds are unstable, which hinders the widespread application of such tags.
Prudencio等(Chem. Eur. J., 2004, 10(3): 3252~3260.)报道了具有两个活性巯基的化合物L-1(见图2),其由DTPA双酸酐和S-(2-氨乙基)甲烷硫代磺酸反应得到,合成方法简单。此标签可以和蛋白质上距离8~10Å的两个半胱氨酸残基同时反应,形成两个二硫键,增加了标签的刚性,限制了标签相对于蛋白质的运动,避免了PCS的平均化,在距离顺磁金属离子4nm处仍有明显的PCS。但是由于其存在多个手性中心,与蛋白质连接以后,滴加顺磁金属离子,会产生至少5个顺磁信号峰,致使1H-15N HSQC谱图非常复杂。 Prudencio et al. ( Chem. Eur. J. , 2004 , 10(3): 3252~3260.) reported the compound L-1 with two active sulfhydryl groups (see Figure 2), which consists of DTPA bisanhydride and S-(2 -Aminoethyl) methane thiosulfonic acid reaction, the synthesis method is simple. This label can react with two cysteine residues at a distance of 8-10 Å on the protein at the same time, forming two disulfide bonds, which increases the rigidity of the label, limits the movement of the label relative to the protein, and avoids the averaging of PCS , there is still an obvious PCS at a distance of 4nm from the paramagnetic metal ion. However, due to the presence of multiple chiral centers, at least 5 paramagnetic signal peaks will be generated when paramagnetic metal ions are added dropwise after linking with the protein, resulting in a very complicated 1 H- 15 N HSQC spectrum.
Li等(Chem. Commun. , 2012, 48: 2704–2706.)首次报道了利用末端烯键与蛋白质侧链巯基的迈克尔加成反应将化合物L-2(见图2)定点标记到蛋白质上,加成产物含有硫醚键,它可以在还原性环境和碱性条件下稳定存在。然而化合物L-2只有三个配位点,镧系金属离子和其配位以后,还能结合其他配位原子。 Li et al. ( Chem. Commun. , 2012 , 48: 2704–2706.) reported for the first time that the compound L-2 (see Figure 2) was labeled onto the protein by the Michael addition reaction of the terminal ethylenic bond and the protein side chain sulfhydryl group. The addition products contain thioether linkages, which are stable under reducing and alkaline conditions. However, compound L-2 has only three coordination sites, and after the lanthanide metal ion coordinates with it, it can also combine with other coordination atoms.
Vlasie等(Chem. Eur. J., 2007, 13(6): 1715~1723.)报道了化合物L-3(见图2),它通过两个二硫键和蛋白质上的两个巯基连接,这种连接方式增加了标签的刚性,降低了顺磁标签相对于蛋白质的运动。但是作者发现L-2和蛋白质连接以后,滴加顺磁金属离子,HSQC中部分残基有两个顺磁信号,说明标签和顺磁金属离子配位以后,存在不止一种构象。 Vlasie et al. ( Chem. Eur. J. , 2007 , 13(6): 1715~1723.) reported compound L-3 (see Figure 2), which is linked by two disulfide bonds and two sulfhydryl groups on the protein, This type of attachment increases the rigidity of the tag and reduces the motion of the paramagnetic tag relative to the protein. However, the author found that after L-2 was connected to the protein, paramagnetic metal ions were added dropwise, and some residues in HSQC had two paramagnetic signals, indicating that after the label and the paramagnetic metal ion were coordinated, there was more than one conformation.
Keizers等(J. Am .Chem. Soc., 2007, 129: 9292–9293; J. Am. Chem .Soc., 2008, 130: 14802–14812.)报道了化合物L-4和L-5(见图2),他们在cyclen中引入了两个吡啶氮氧化物,吡啶氮氧化物的引入改变了L-4和L-5与镧系金属离子的配位环境。它们与蛋白质连接后,1H-15N HSQC谱图中只有一套PCS,这说明L-4和L-5与镧系金属离子配位以后只有一种构象。L-4通过两个二硫键和蛋白质连接,限制了其相对于蛋白质的运动,所以测得的PCS和RDC值比L-4大的多。标签L-5的缺点是其自身的净电荷,因为其与镧系金属离子配位后显+3价,在研究蛋白质-蛋白质或蛋白质-配体识别时这三个额外的正电荷会造成一些未知的影响。 Keizers et al. ( J. Am. Chem. Soc. , 2007 , 129: 9292-9293; J. Am. Chem. Soc. , 2008 , 130: 14802-14812.) reported compounds L-4 and L-5 (see Figure 2), they introduced two pyridyl nitrogen oxides into the cyclen, and the introduction of pyridyl nitrogen oxides changed the coordination environment of L-4 and L-5 with lanthanide metal ions. There is only one set of PCS in the 1 H- 15 N HSQC spectrum after they are linked to the protein, which indicates that L-4 and L-5 have only one conformation after they are coordinated with lanthanide metal ions. L-4 is connected to the protein through two disulfide bonds, which limits its movement relative to the protein, so the measured PCS and RDC values are much larger than those of L-4. The disadvantage of label L-5 is its own net charge, because it shows +3 valence after coordination with lanthanide metal ions, these three additional positive charges will cause some problems when studying protein-protein or protein-ligand recognition Unknown effects.
Liu等(J. Am. Chem. Soc., 2012, 134: 17306–17313.)设计合成了标签L-6(见图2),它含有两个对硝基苯酚基团,对位硝基增强了苯酚的酸性,与镧系金属离子配位后质子会离去,配合物总体显+1价,和L-5相比,明显少两个正电荷。化合物L-6和蛋白质连接后,也是产生一套PCS。值得注意的是,当标签L-6与酵母细胞色素C突变体连接以后,滴加镧系金属离子,谱图中大部分氨基酸残基出现两套锋,而且峰强度和化学位移值随pH的不同发生变化。但是标签L-5连接到同一蛋白质的相同位点只有一套PCS,这是因为L-6中对硝基苯酚的氧原子电荷密度比L-5中吡啶氮氧化物的氧原子小,这种情况导致了水分子参与镧系金属离子的配位,但这并不是L-6有两套PCS的根本原因,因为L-6和其它蛋白质相连时没有两套锋。真正的原因是在酵母细胞色素C突变体中,标签连接位点附近有一个组氨酸残基,组氨酸咪唑环中的氮原子可以与参与配位的水分子形成氢键,破坏了络合物的对称性,产生非对映异构体。pH的不同会影响氢键的变化,导致两种非对映异构体相互转换,因此可以通过调节pH,用同一个配体得到两组不同的PCS数据。 Liu et al. ( J. Am. Chem. Soc. , 2012 , 134: 17306–17313.) designed and synthesized the label L-6 (see Figure 2), which contains two p-nitrophenol groups, and the para-nitro group enhances With the acidity of phenol, the protons will leave after coordination with lanthanide metal ions, and the overall complex has a valence of +1. Compared with L-5, it has two less positive charges. After the compound L-6 is connected with the protein, a set of PCS is also generated. It is worth noting that when the label L-6 was linked to the yeast cytochrome C mutant, and the lanthanide metal ions were added dropwise, two sets of fronts appeared in most of the amino acid residues in the spectrum, and the peak intensity and chemical shift value varied with pH. Different changes. However, there is only one set of PCS for label L-5 attached to the same site of the same protein. This is because the oxygen atom charge density of p-nitrophenol in L-6 is smaller than that of pyridine nitrogen oxide in L-5. Circumstances lead to the participation of water molecules in the coordination of lanthanide metal ions, but this is not the fundamental reason why L-6 has two sets of PCS, because L-6 does not have two sets of fronts when it is connected to other proteins. The real reason is that in the yeast cytochrome C mutant, there is a histidine residue near the tag attachment site, and the nitrogen atom in the histidine imidazole ring can form hydrogen bonds with the water molecules participating in the coordination, destroying the network. The symmetry of the compound produces diastereomers. The difference in pH will affect the change of hydrogen bonds, resulting in the mutual conversion of the two diastereomers. Therefore, two sets of different PCS data can be obtained with the same ligand by adjusting the pH.
Graham等(Bioconjugate chem., 2011, 22: 2118–2125.)在DOTA衍生物中引入了手性酰胺,从而使化合物L-7(见图2)和镧系金属离子配位后只有一种构象,由于空间体积比较大,限制了其相对于蛋白质的运动,所以观测到比较大的PCS。 Graham et al. ( Bioconjugate chem. , 2011 , 22: 2118–2125.) introduced chiral amides into DOTA derivatives, so that compound L-7 (see Figure 2) has only one conformation after coordination with lanthanide metal ions , due to the relatively large space volume, which restricts its movement relative to the protein, a relatively large PCS is observed.
Loh等(Bioconjugate chem., 2013, 24: 260–268.)通过点击化学的方法成功地将DOTA衍生物L-8(见图2)定点标记到蛋白质上。具体方法是把非天然氨基酸p-叠氮基-L-苯丙氨酸(AzF)引入到蛋白质中,Cu(I)作为催化剂,标签L-8和AzF发生环加成反应共价连接到蛋白质ubiquitin上。和常用的二硫键连接相比,三唑环有更好的刚性和化学稳定性,但是这个反应需要在无氧条件下进行,增大了实验的复杂性,而且催化剂Cu(I)会导致蛋白质样品沉淀。 Loh et al. ( Bioconjugate chem. , 2013 , 24: 260–268. ) successfully labeled DOTA derivative L-8 (see Figure 2 ) onto proteins by means of click chemistry. The specific method is to introduce the unnatural amino acid p -azido-L-phenylalanine (AzF) into the protein, Cu(I) acts as a catalyst, and the tag L-8 and AzF undergo a cycloaddition reaction to covalently link to the protein on ubiquitin. Compared with the commonly used disulfide bond connection, the triazole ring has better rigidity and chemical stability, but this reaction needs to be carried out under anaerobic conditions, which increases the complexity of the experiment, and the catalyst Cu(I) will lead to Precipitation of protein samples.
发明内容 Contents of the invention
本发明的目的是针对上述技术分析和存在的问题,提供一种以1,4,7,10-四氮杂环十二烷为骨架的手性顺磁探针,该顺磁探针可与蛋白质的特定位点进行选择性连接,手性专一、构象单一,谱图只有一套峰,灵敏度高;高度化学选择性;电中性,对大分子影响小;水溶性好、配位点多、稳定性强、齿合度高;刚性极强,对大分子固定作用好;探针与蛋白质通过稳定的硫醚键连接,可以进行细胞内测量。 The purpose of the present invention is to provide a kind of chiral paramagnetic probe with 1,4,7,10-tetraazacyclododecane as skeleton for above-mentioned technical analysis and existing problem, and this paramagnetic probe can be used with Selective connection at specific sites of the protein, specific chirality, single conformation, only one set of peaks in the spectrum, high sensitivity; high chemoselectivity; electrical neutrality, little impact on macromolecules; good water solubility, coordination points Multiple, strong stability, high degree of toothing; extremely rigid, good immobilization effect on macromolecules; probes and proteins are connected by stable thioether bonds, which can be used for intracellular measurement.
本发明的技术方案: Technical scheme of the present invention:
一种以1,4,7,10-四氮杂环十二烷为骨架的手性顺磁探针,其化学名称为1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶-2,3,4-三(S)-丙酸负离子-Tm3+配合物,化学分子式为C30H40N5O8STm,化学结构式为: A chiral paramagnetic probe with a skeleton of 1,4,7,10-tetraazacyclododecane, its chemical name is 1,4,7,10-tetraazacyclododecane-1- (2-Methyl-4-phenylsulfonyl-6-methylene)pyridine-2,3,4-tri(S)-propionic acid anion-Tm 3+ complex, the chemical formula is C 30 H 40 N 5 O 8 STm, the chemical structure formula is:
。 .
一种所述以1,4,7,10-四氮杂环十二烷为骨架的手性顺磁探针的制备方法,步骤如下: A preparation method of the chiral paramagnetic probe with 1,4,7,10-tetraazacyclododecane as the skeleton, the steps are as follows:
1)2,6-二甲基吡啶氮氧化物的合成 1) Synthesis of 2,6-lutidine nitrogen oxide
将2,6-二甲基吡啶、冰乙酸、30wt%过氧化氢按体积比为15:80:25混合,保持80oC加热搅拌回流4-12h直至原料转化完全,将所得混合液减压浓缩至三分之一后倒入冰水混合物中,冰水混合物中2,6-二甲基吡啶与冰水混合物的用量比为15.0mL:100g,然后用碳酸钾固体将体系调至pH>8,依次用二氯甲烷萃取、无水硫酸钠干燥,过滤后旋干,得到淡黄色油状物2,6-二甲基吡啶氮氧化物; Mix 2,6-lutidine, glacial acetic acid, and 30wt% hydrogen peroxide in a volume ratio of 15:80:25, keep stirring at 80 o C and reflux for 4-12 hours until the conversion of raw materials is complete, and depressurize the resulting mixture Concentrate to one-third and pour into ice-water mixture. The dosage ratio of 2,6-lutidine to ice-water mixture in ice-water mixture is 15.0mL: 100g, and then use potassium carbonate solid to adjust the system to pH> 8, sequentially extracted with dichloromethane, dried over anhydrous sodium sulfate, filtered and spin-dried to obtain 2,6-lutidine nitrogen oxide as a light yellow oil;
2)2,6-二甲基-4-硝基吡啶氮氧化物的合成 2) Synthesis of 2,6-dimethyl-4-nitropyridine nitrogen oxide
将上述2,6-二甲基吡啶氮氧化物冰浴降温至10 oC以下,搅拌下依次缓慢滴加浓度为98wt%的浓硫酸、浓度为95wt%的发烟硝酸,2,6-二甲基吡啶氮氧化物、浓硫酸、发烟硝酸的用量比为15.2g:22mL:22mL,加毕,撤冰浴,加热至110 oC搅拌回流3-6h直至反应完全;将反应液置于冰块上稀释,2,6-二甲基吡啶氮氧化物与冰块用量比为15.2g:200g,用碳酸钠固体将体系调至pH为8-10,析出大量黄色固体;加水于混合液中使2,6-二甲基吡啶氮氧化物与混合液之比为15.2g:500mL,加热至40oC,搅拌溶解生成的无机盐,过滤出黄色沉淀,红外灯干燥至恒重,得到黄色固体2,6-二甲基-4-硝基吡啶氮氧化物;Cool the above-mentioned 2,6-lutidine nitrogen oxide ice bath to below 10 o C, slowly add 98wt% concentrated sulfuric acid, 95wt% fuming nitric acid, 2,6-bis The dosage ratio of picoline nitrogen oxide, concentrated sulfuric acid and fuming nitric acid is 15.2g: 22mL: 22mL. After adding, remove the ice bath, heat to 110 o C, stir and reflux for 3-6h until the reaction is complete; put the reaction solution in Dilute on ice cubes, the ratio of 2,6-lutidine nitrogen oxide to ice cubes is 15.2g: 200g, adjust the system to pH 8-10 with solid sodium carbonate, and a large number of yellow solids are precipitated; add water to the mixture In the mixture, the ratio of 2,6-lutidine nitrogen oxide to the mixed solution was 15.2g:500mL, heated to 40 o C, stirred to dissolve the formed inorganic salt, filtered out the yellow precipitate, dried to constant weight with an infrared lamp, and obtained Yellow solid 2,6-dimethyl-4-nitropyridine nitrogen oxide;
3)2-甲基-4-硝基-6-羟甲基吡啶的合成 3) Synthesis of 2-methyl-4-nitro-6-hydroxymethylpyridine
将上述2,6-二甲基-4-硝基吡啶氮氧化物与二氯甲烷混合,冰浴降至10 oC以下,搅拌下缓慢滴加三氟乙酸酐,2,6-二甲基-4-硝基吡啶氮氧化物、二氯甲烷与三氟乙酸酐的用量比为9.2g:100mL:20mL,然后撤冰浴,加热搅拌回流9-18h直至反应完全,旋干后将其倒入冰水中,2,6-二甲基-4-硝基吡啶氮氧化物与冰水的质量比为9.2:80,用碳酸钾固体将体系调至pH为8,室温搅拌5h至水解完全,加入氢氧化钾将pH调至12,依次用二氯甲烷萃取、饱和食盐水洗涤、无水硫酸钠干燥,过滤、旋干后,得到淡黄色固体2-甲基-4-硝基-6-羟甲基吡啶; Mix the above-mentioned 2,6-dimethyl-4-nitropyridine nitrogen oxide with dichloromethane, lower the ice bath to below 10 o C, slowly add trifluoroacetic anhydride, 2,6-dimethyl - The ratio of 4-nitropyridine nitrogen oxide, dichloromethane and trifluoroacetic anhydride is 9.2g: 100mL: 20mL, then remove the ice bath, heat and stir under reflux for 9-18h until the reaction is complete, spin dry and pour it out Put into ice water, the mass ratio of 2,6-dimethyl-4-nitropyridine nitrogen oxide to ice water is 9.2:80, adjust the system to pH 8 with solid potassium carbonate, stir at room temperature for 5 hours until the hydrolysis is complete, Potassium hydroxide was added to adjust the pH to 12, followed by extraction with dichloromethane, washing with saturated brine, drying over anhydrous sodium sulfate, filtering, and spinning to obtain a light yellow solid 2-methyl-4-nitro-6- Hydroxymethylpyridine;
4)2-甲基-4-苯砜基-6-羟甲基吡啶的合成 4) Synthesis of 2-methyl-4-phenylsulfone-6-hydroxymethylpyridine
将上述2-甲基-4-硝基-6-羟甲基吡啶与苯亚磺酸钠、乙腈混合,2-甲基-4-硝基-6-羟甲基吡啶、苯亚磺酸钠、乙腈的用量比为3.0g:7.0g:60mL,氩气保护下加热至85oC搅拌回流2-4d直至原料转化完全,过滤后用乙腈洗涤滤渣,合并滤液和洗涤液后加入5.0g硅胶,旋干、柱分离后,得到白色固体2-甲基-4-苯砜基-6-羟甲基吡啶; Mix the above 2-methyl-4-nitro-6-hydroxymethylpyridine with sodium benzenesulfinate and acetonitrile, 2-methyl-4-nitro-6-hydroxymethylpyridine and sodium benzenesulfinate , The dosage ratio of acetonitrile is 3.0g: 7.0g: 60mL, heated to 85 o C under the protection of argon, stirred and refluxed for 2-4d until the conversion of raw materials is complete, after filtering, wash the filter residue with acetonitrile, combine the filtrate and washing liquid, add 5.0g of silica gel , after spinning to dryness and column separation, a white solid 2-methyl-4-phenylsulfone-6-hydroxymethylpyridine was obtained;
5)2-甲基-4-苯砜基-6-溴甲基吡啶的合成 5) Synthesis of 2-methyl-4-phenylsulfonyl-6-bromomethylpyridine
将上述2-甲基-4-苯砜基-6-羟甲基吡啶与氯仿混合,冰浴降至10 oC以下,搅拌下缓慢滴加三溴化磷和氯仿的混合液,2-甲基-4-苯砜基-6-羟甲基吡啶,三溴化磷、氯仿的用量分别为2.3g、1.4mL、35+15mL,然后撤冰浴,在50oC下反应2-5h直至原料转化完全,将反应液稀释至冰水中,2-甲基-4-苯砜基-6-羟甲基吡啶与冰水的质量比为2.3:80,用碳酸钾固体将体系调至pH为 8-9,依次用二氯甲烷萃取、无水硫酸钠干燥,过滤、旋干、柱分离后,得到白色固体2-甲基-4-苯砜基-6-溴甲基吡啶; Mix the above 2-methyl-4-phenylsulfonyl-6-hydroxymethylpyridine with chloroform, lower the ice bath to below 10 o C, slowly add the mixture of phosphorus tribromide and chloroform dropwise under stirring, 2-methyl Base-4-phenylsulfone-6-hydroxymethylpyridine, phosphorus tribromide, and chloroform were used in amounts of 2.3g, 1.4mL, and 35+15mL, respectively, and then the ice bath was removed, and the reaction was carried out at 50 o C for 2-5h until The raw material conversion is complete, the reaction solution is diluted into ice water, the mass ratio of 2-methyl-4-phenylsulfone-6-hydroxymethylpyridine to ice water is 2.3:80, and the system is adjusted to a pH of 8-9, sequentially extracted with dichloromethane, dried over anhydrous sodium sulfate, filtered, spin-dried, and column separated to obtain 2-methyl-4-phenylsulfone-6-bromomethylpyridine as a white solid;
6)1, 1,-亚乙基双-2-咪唑啉的合成 6) Synthesis of 1, 1 , -ethylenebis-2-imidazoline
将市售70%纯度的三乙烯四胺、N,N-二甲基甲酰胺二甲缩醛、甲苯混合,三乙烯四胺、N,N-二甲基甲酰胺二甲缩醛和甲苯的体积比为30:60:100,加热至85oC搅拌回流2-4h,旋除甲苯直至有白色固体析出为止,冷却至室温,析出大量固体,过滤后用四氢呋喃洗涤,红外灯干燥至恒重,得到白色固体1, 1,-亚乙基双-2-咪唑啉; Mix commercially available triethylenetetramine, N,N-dimethylformamide dimethyl acetal, and toluene with a purity of 70%; The volume ratio is 30:60:100, heat to 85 o C, stir and reflux for 2-4h, spin off the toluene until a white solid precipitates, cool to room temperature, a large amount of solid precipitates, filter and wash with tetrahydrofuran, dry to constant weight with an infrared lamp , to obtain white solid 1, 1 , -ethylenebis-2-imidazoline;
7)成环反应合成中间体 7) Synthesis of intermediates by ring formation reaction
将上述1, 1,-亚乙基双-2-咪唑啉、1,2-二溴乙烷、碳酸钾与乙腈混合,1, 1,-亚乙基双-2-咪唑啉、1,2-二溴乙烷、碳酸钾、乙腈的用量比为8.0g:5.8mL:5.0g:400mL,氩气保护下加热搅拌回流3h,待体系降温至50oC后过滤,将滤液旋干,得到黄色固体状中间体; Mix the above 1,1 , -ethylenebis-2-imidazoline, 1,2-dibromoethane, potassium carbonate and acetonitrile, 1,1 , -ethylenebis-2-imidazoline, 1,2 - The ratio of dibromoethane, potassium carbonate and acetonitrile is 8.0g: 5.8mL: 5.0g: 400mL, heated and stirred to reflux for 3h under the protection of argon, and filtered after the system is cooled to 50 o C, and the filtrate is spin-dried to obtain Yellow solid intermediate;
8)1,4,7,10-四氮杂环十二烷的合成 8) Synthesis of 1,4,7,10-tetraazacyclododecane
将上述中间体与氢氧化钾和水混合,中间体、氢氧化钾和水的用量比为10.0g:16.8g:80mL,升温至110oC搅拌回流2h至水解完全,旋除水直到有白色固体析出,冷却至室温析晶,过滤后滤渣用红外灯干燥至恒重,得到白色固体1,4,7,10-四氮杂环十二烷; Mix the above intermediate with potassium hydroxide and water, the ratio of intermediate, potassium hydroxide and water is 10.0g: 16.8g: 80mL, heat up to 110 o C, stir and reflux for 2h until the hydrolysis is complete, spin off the water until there is a white The solid was precipitated, cooled to room temperature and crystallized, and after filtration, the filter residue was dried to constant weight with an infrared lamp to obtain a white solid 1,4,7,10-tetraazacyclododecane;
9)1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶的合成 9) Synthesis of 1,4,7,10-tetraazacyclododecane-1-(2-methyl-4-phenylsulfone-6-methylene)pyridine
将上述1,4,7,10-四氮杂环十二烷和氯仿混合,氩气保护下,用滴液漏斗缓慢滴加步骤5)制得的2-甲基-4-苯砜基-6-溴甲基吡啶的氯仿溶液,1,4,7,10-四氮杂环十二烷、2-甲基-4-苯砜基-6-溴甲基吡啶、氯仿和无水碳酸钾的用量比为2.9g:3.7g:150mL:5.0g,反应36-60h直至2-甲基-4-苯砜基-6-溴甲基吡啶转化完全,然后加入无水碳酸钾,继续反应5h,过滤、旋干、柱分离后,得到淡黄色固体1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶; Mix the above 1,4,7,10-tetraazacyclododecane and chloroform, and slowly add the 2-methyl-4-phenylsulfone- 6-bromomethylpyridine in chloroform, 1,4,7,10-tetraazacyclododecane, 2-methyl-4-phenylsulfone-6-bromomethylpyridine, chloroform and anhydrous potassium carbonate The dosage ratio is 2.9g: 3.7g: 150mL: 5.0g, react for 36-60h until the conversion of 2-methyl-4-phenylsulfone-6-bromomethylpyridine is complete, then add anhydrous potassium carbonate, continue to react for 5h , filtered, spin-dried, and column separated to obtain light yellow solid 1,4,7,10-tetraazacyclododecane-1-(2-methyl-4-phenylsulfone-6-methylene) pyridine;
10)L-对甲苯磺酰乳酸乙酯的合成 10) Synthesis of ethyl p-toluenesulfonyl lactate
将L-乳酸乙酯、二氯甲烷和对甲苯磺酰氯混合,冰浴降温、搅拌,缓慢滴加三乙胺,L-乳酸乙酯、二氯甲烷、三乙胺、对甲苯磺酰氯的用量比为12.5g:80mL:18.6mL:20.2g,撤冰浴后于室温下继续反应3h,过滤出三乙胺盐酸盐,往滤液中加入前述三乙胺滴加量10%的三乙胺,室温反应8-10h以使原料转化完全,然后加入蒸馏水,蒸馏水与L-乳酸乙酯的用量比为150mL:12.5g,依次用二氯甲烷萃取、无水硫酸钠干燥,过滤、旋干、柱分离后,得到无色液体L-对甲苯磺酰乳酸乙酯; Mix L-ethyl lactate, dichloromethane and p-toluenesulfonyl chloride, cool down in an ice bath, stir, slowly add triethylamine dropwise, the amount of L-ethyl lactate, dichloromethane, triethylamine, p-toluenesulfonyl chloride The ratio is 12.5g: 80mL: 18.6mL: 20.2g. After removing the ice bath, continue to react at room temperature for 3h, filter out triethylamine hydrochloride, and add 10% of the aforementioned triethylamine dropwise triethylamine to the filtrate , react at room temperature for 8-10 hours to complete the conversion of raw materials, then add distilled water, the ratio of distilled water to L-ethyl lactate is 150mL: 12.5g, sequentially extract with dichloromethane, dry with anhydrous sodium sulfate, filter, spin dry, After column separation, a colorless liquid L-ethyl p-toluenesulfonyl lactate was obtained;
11)1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶-2,3,4-三(S)-丙酸乙酯的合成 11) 1,4,7,10-tetraazacyclododecane-1-(2-methyl-4-phenylsulfonyl-6-methylene)pyridine-2,3,4-tri(S) - Synthesis of ethyl propionate
将步骤9)制得的1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶、无水碳酸钾、上述L-对甲苯磺酰乳酸乙酯和乙腈混合,1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶、无水碳酸钾、L-对甲苯磺酰乳酸乙酯、乙腈的用量比为1.02g:1.64g:3.25g:40mL,氩气保护下在55-60oC温度反应50-60h,过滤并旋干滤液、柱分离后得到淡黄色半固体1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶-2,3,4-三(S)-丙酸乙酯; The 1,4,7,10-tetraazacyclododecane-1-(2-methyl-4-phenylsulfone-6-methylene)pyridine prepared in step 9), anhydrous potassium carbonate, The above L-toluenesulfonyl lactylate ethyl ester mixed with acetonitrile, 1,4,7,10-tetraazacyclododecane-1-(2-methyl-4-phenylsulfonyl-6-methylene) The ratio of pyridine, anhydrous potassium carbonate, L-ethyl p-toluenesulfonyl lactylate, and acetonitrile is 1.02g: 1.64g: 3.25g: 40mL, react at 55-60 o C for 50-60h under the protection of argon, and filter The filtrate was spin-dried and separated by a column to obtain light yellow semi-solid 1,4,7,10-tetraazacyclododecane-1-(2-methyl-4-phenylsulfone-6-methylene)pyridine - ethyl 2,3,4-tri(S)-propionate;
12)1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶-2,3,4-三(S)-丙酸的合成 12) 1,4,7,10-Tetraazacyclododecane-1-(2-methyl-4-phenylsulfone-6-methylene)pyridine-2,3,4-tri(S) -Synthesis of propionic acid
将上述1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶-2,3,4-三(S)-丙酸乙酯、氢氧化钠、水和乙醇混合,1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶-2,3,4-三(S)-丙酸乙酯、氢氧化钠、水、乙醇的用量比为1.50g:0.50g:10mL:10mL,室温搅拌8-10h以使水解完全,然后用H+离子交换树脂将体系调至pH< 4,过滤后用甲醇洗涤滤渣,将滤液合并,浓缩至干,得到白色固体1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶-2,3,4-三(S)-丙酸; The above 1,4,7,10-tetraazacyclododecane-1-(2-methyl-4-phenylsulfonyl-6-methylene)pyridine-2,3,4-tri(S) - Mixture of ethyl propionate, sodium hydroxide, water and ethanol, 1,4,7,10-tetraazacyclododecane-1-(2-methyl-4-phenylsulfone-6-methylene ) The dosage ratio of pyridine-2,3,4-tri(S)-propionate, sodium hydroxide, water and ethanol is 1.50g:0.50g:10mL:10mL, stir at room temperature for 8-10h to complete the hydrolysis, Then use H + ion exchange resin to adjust the system to pH<4, filter and wash the filter residue with methanol, combine the filtrates and concentrate to dryness to obtain white solid 1,4,7,10-tetraazacyclododecane-1 -(2-Methyl-4-phenylsulfonyl-6-methylene)pyridine-2,3,4-tri(S)-propionic acid;
13)1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶-2,3,4-三(S)-丙酸负离子-Tm3+配合物的合成 13) 1,4,7,10-Tetraazacyclododecane-1-(2-methyl-4-phenylsulfonyl-6-methylene)pyridine-2,3,4-tri(S) -Synthesis of propionic acid anion-Tm 3+ complex
将上述1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶-2,3,4-三(S)-丙酸、Tm(NO3)3 . 6H2O和水混合,1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶-2,3,4-三(S)-丙酸、Tm(NO3)3 . 6H2O与水的用量比为0.1263g:0.1839g:8.0mL,加热至100oC搅拌回流45h以使反应完全,冷却至室温后,加入水,用浓度为1mol/L的氢氧化钾溶液将体系调至pH为 8,搅拌5min,离心取上层清液,加入色谱纯甲醇,微波振荡使其充分溶解,过滤得无机盐并旋干,得到目标物白色固体1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶-2,3,4-三(S)-丙酸负离子-Tm3+配合物。 The above 1,4,7,10-tetraazacyclododecane-1-(2-methyl-4-phenylsulfonyl-6-methylene)pyridine-2,3,4-tri(S) - Propionic acid, Tm(NO 3 ) 3 . 6H 2 O mixed with water, 1,4,7,10-tetraazacyclododecane-1-(2-methyl-4-phenylsulfone-6- Methylene) pyridine-2,3,4-tri(S)-propionic acid, Tm(NO 3 ) 3 . 6H 2 O and water in the ratio of 0.1263g: 0.1839g: 8.0mL, heated to 100 o C Stir and reflux for 45 hours to make the reaction complete. After cooling to room temperature, add water, adjust the system to pH 8 with a potassium hydroxide solution with a concentration of 1mol/L, stir for 5 minutes, centrifuge to take the supernatant, add chromatographically pure methanol, and microwave Shake to make it fully dissolved, filter the inorganic salt and spin dry to obtain the target product 1,4,7,10-tetraazacyclododecane-1-(2-methyl-4-phenylsulfone-6 -methylene)pyridine-2,3,4-tri(S)-propionic acid anion-Tm 3+ complex.
本发明的优点是:1)手性专一、构象单一,谱图只有一套峰,灵敏度高;2)高度化学选择性;3)电中性,对大分子影响小;4)水溶性好、配位点多、稳定性强、齿合度高; 5)刚性极强,对大分子固定作用好;6)探针与蛋白质通过稳定的硫醚键连接,可以进行细胞内测量,这些优点使其能够对蛋白质的顺磁研究起到重要的推动作用。 The advantages of the present invention are: 1) specific chirality, single conformation, only one set of peaks in the spectrum, high sensitivity; 2) high chemical selectivity; 3) electrical neutrality, little influence on macromolecules; 4) good water solubility , many coordination points, strong stability, and high degree of toothing; 5) extremely rigid, good for immobilizing macromolecules; 6) the probe and protein are connected by a stable thioether bond, which can be used for intracellular measurement. These advantages make It can play an important role in promoting the paramagnetic research of proteins.
附图说明 Description of drawings
图1为蛋白质活化及连接过程。 Figure 1 shows the process of protein activation and connection.
图2为已报道的顺磁探针。 Figure 2 shows the reported paramagnetic probes.
图3为本发明手性顺磁探针的合成路线。 Fig. 3 is a synthetic route of the chiral paramagnetic probe of the present invention.
图4为蛋白质与顺磁探针的连接方式。 Figure 4 shows the connection method between protein and paramagnetic probe.
图5 为0.1 mM 15N-标记的ubiquitin G47C的15N-HSQC谱。 Fig. 5 is the 15 N-HSQC spectrum of 0.1 mM 15 N-labeled ubiquitin G47C.
图6 为0.1 mM 15N-标记的ubiquitin G47C-Tm-T1的15N-HSQC谱。 Fig. 6 is the 15 N-HSQC spectrum of 0.1 mM 15 N-labeled ubiquitin G47C-Tm-T 1 .
具体实施方式 Detailed ways
实施例: Example:
一种以1,4,7,10-四氮杂环十二烷为骨架的手性顺磁探针,其化学名称为1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶-2,3,4-三(S)-丙酸负离子-Tm3+配合物,化学分子式为C30H40N5O8STm,化学结构式为: A chiral paramagnetic probe with a skeleton of 1,4,7,10-tetraazacyclododecane, its chemical name is 1,4,7,10-tetraazacyclododecane-1- (2-Methyl-4-phenylsulfonyl-6-methylene)pyridine-2,3,4-tri(S)-propionic acid anion-Tm 3+ complex, the chemical formula is C 30 H 40 N 5 O 8 STm, the chemical structure formula is:
, ,
其制备方法如图3所示,步骤如下: Its preparation method is shown in Figure 3, and the steps are as follows:
1)2,6-二甲基吡啶氮氧化物的合成,即路线中化合物2 1) Synthesis of 2,6-lutidine nitrogen oxide, that is, compound 2 in the route
将2,6-二甲基吡啶、冰乙酸、30wt%过氧化氢按体积比为15:80:25混合,保持80oC加热搅拌回流4-12h直至原料转化完全,将所得混合液减压浓缩至三分之一后倒入冰水混合物中,冰水混合物中2,6-二甲基吡啶与冰水混合物的用量比为15.0mL:100g,然后用碳酸钾固体将体系调至pH>8,依次用二氯甲烷萃取、无水硫酸钠干燥,过滤后旋干,得到淡黄色油状物2,6-二甲基吡啶氮氧化物,产率95.6%。1H-NMR(400 MHz,CDCl3)δ ppm:7.13(2H,d,J = 7.6Hz),7.05(1H,t,J = 7.6Hz),2.52(6H,s);13C-NMR(100 MHz,CDCl3)δ ppm:148.96, 124.46,123.92,18.23。 Mix 2,6-lutidine, glacial acetic acid, and 30wt% hydrogen peroxide in a volume ratio of 15:80:25, keep stirring at 80 o C and reflux for 4-12 hours until the conversion of raw materials is complete, and depressurize the resulting mixture Concentrate to one-third and pour into ice-water mixture. The dosage ratio of 2,6-lutidine to ice-water mixture in ice-water mixture is 15.0mL: 100g, and then use potassium carbonate solid to adjust the system to pH> 8, sequentially extracted with dichloromethane, dried over anhydrous sodium sulfate, filtered and spin-dried to obtain 2,6-lutidine nitrogen oxide as a light yellow oil with a yield of 95.6%. 1 H-NMR (400 MHz, CDCl 3 ) δ ppm: 7.13 (2H, d, J = 7.6Hz), 7.05 (1H, t, J = 7.6Hz), 2.52 (6H, s); 13 C-NMR ( 100 MHz, CDCl 3 ) δ ppm: 148.96, 124.46, 123.92, 18.23.
2)2,6-二甲基-4-硝基吡啶氮氧化物的合成,即路线中化合物3 2) Synthesis of 2,6-dimethyl-4-nitropyridine nitrogen oxide, that is, compound 3 in the route
将上述2,6-二甲基吡啶氮氧化物冰浴降温至10 oC以下,搅拌下依次缓慢滴加浓度为98wt%的浓硫酸、浓度为95wt%的发烟硝酸,2,6-二甲基吡啶氮氧化物、浓硫酸、发烟硝酸的用量比为15.2g:22mL:22mL,加毕,撤冰浴,加热至110 oC搅拌回流3-6h直至反应完全;将反应液置于冰块上稀释,2,6-二甲基吡啶氮氧化物与冰块用量比为15.2g:200g,用碳酸钠固体将体系调至pH为8-10,析出大量黄色固体;加水于混合液中使2,6-二甲基吡啶氮氧化物与混合液之比为15.2g:500mL,加热至40oC,搅拌溶解生成的无机盐,过滤出黄色沉淀,红外灯干燥至恒重,得到黄色固体2,6-二甲基-4-硝基吡啶氮氧化物,产率65.2%。1H-NMR(400 MHz,CDCl3)δ ppm:8.04(2H,s),2.59(6H,s);13C-NMR(100 MHz,CDCl3)δ ppm:150.32,117.92,18.56。 Cool the above-mentioned 2,6-lutidine nitrogen oxide ice bath to below 10 o C, slowly add 98wt% concentrated sulfuric acid, 95wt% fuming nitric acid, 2,6-bis The dosage ratio of picoline nitrogen oxide, concentrated sulfuric acid and fuming nitric acid is 15.2g: 22mL: 22mL. After adding, remove the ice bath, heat to 110 o C, stir and reflux for 3-6h until the reaction is complete; put the reaction solution in Dilute on ice cubes, the ratio of 2,6-lutidine nitrogen oxide to ice cubes is 15.2g: 200g, adjust the system to pH 8-10 with solid sodium carbonate, and a large number of yellow solids are precipitated; add water to the mixture In the mixture, the ratio of 2,6-lutidine nitrogen oxide to the mixed solution was 15.2g:500mL, heated to 40 o C, stirred to dissolve the formed inorganic salt, filtered out the yellow precipitate, dried to constant weight with an infrared lamp, and obtained Yellow solid 2,6-dimethyl-4-nitropyridine nitrogen oxide, yield 65.2%. 1 H-NMR (400 MHz, CDCl 3 ) δ ppm: 8.04 (2H, s), 2.59 (6H, s); 13 C-NMR (100 MHz, CDCl 3 ) δ ppm: 150.32, 117.92, 18.56.
3)2-甲基-4-硝基-6-羟甲基吡啶的合成,即路线中化合物4 3) Synthesis of 2-methyl-4-nitro-6-hydroxymethylpyridine, that is, compound 4 in the route
将上述2,6-二甲基-4-硝基吡啶氮氧化物与二氯甲烷混合,冰浴降至10 oC以下,搅拌下缓慢滴加三氟乙酸酐,2,6-二甲基-4-硝基吡啶氮氧化物、二氯甲烷与三氟乙酸酐的用量比为9.2g:100mL:20mL,然后撤冰浴,加热搅拌回流9-18h直至反应完全,旋干后将其倒入冰水中,2,6-二甲基-4-硝基吡啶氮氧化物与冰水的质量比为9.2:80,用碳酸钾固体将体系调至pH为8,室温搅拌5h至水解完全,加入氢氧化钾将pH调至12,依次用二氯甲烷萃取、饱和食盐水洗涤、无水硫酸钠干燥,过滤、旋干后,得到淡黄色固体2-甲基-4-硝基-6-羟甲基吡啶,产率80.3%。1H-NMR(400 MHz,CDCl3)δ ppm:7.87(1H,s),7.81(1H,s),4.90(2H,s),3.43(1H,s),2.74(3H,s)。 Mix the above-mentioned 2,6-dimethyl-4-nitropyridine nitrogen oxide with dichloromethane, lower the ice bath to below 10 o C, slowly add trifluoroacetic anhydride, 2,6-dimethyl - The ratio of 4-nitropyridine nitrogen oxide, dichloromethane and trifluoroacetic anhydride is 9.2g: 100mL: 20mL, then remove the ice bath, heat and stir under reflux for 9-18h until the reaction is complete, spin dry and pour it out Put into ice water, the mass ratio of 2,6-dimethyl-4-nitropyridine nitrogen oxide to ice water is 9.2:80, adjust the system to pH 8 with solid potassium carbonate, stir at room temperature for 5 hours until the hydrolysis is complete, Potassium hydroxide was added to adjust the pH to 12, followed by extraction with dichloromethane, washing with saturated brine, drying over anhydrous sodium sulfate, filtering, and spinning to obtain a light yellow solid 2-methyl-4-nitro-6- Hydroxymethylpyridine, yield 80.3%. 1 H-NMR (400 MHz, CDCl 3 ) δ ppm: 7.87 (1H, s), 7.81 (1H, s), 4.90 (2H, s), 3.43 (1H, s), 2.74 (3H, s).
4)2-甲基-4-苯砜基-6-羟甲基吡啶的合成,即路线中化合物5 4) Synthesis of 2-methyl-4-phenylsulfone-6-hydroxymethylpyridine, that is, compound 5 in the route
将上述2-甲基-4-硝基-6-羟甲基吡啶与苯亚磺酸钠、乙腈混合,2-甲基-4-硝基-6-羟甲基吡啶、苯亚磺酸钠、乙腈的用量比为3.0g:7.0g:60mL,氩气保护下加热至85oC搅拌回流2-4d直至原料转化完全,过滤后用乙腈洗涤滤渣,合并滤液和洗涤液后加入5.0g硅胶,旋干、柱分离后,得到白色固体2-甲基-4-苯砜基-6-羟甲基吡啶,产率82.0%。1H-NMR(400 MHz,CDCl3)δ ppm:7.98 (2H,d),7.69(1H,s),7.65(1H,t),7.59(2H,t),7.55(1H,s),4.80(2H,s),2.65(3H,s)。 Mix the above 2-methyl-4-nitro-6-hydroxymethylpyridine with sodium benzenesulfinate and acetonitrile, 2-methyl-4-nitro-6-hydroxymethylpyridine and sodium benzenesulfinate , The dosage ratio of acetonitrile is 3.0g: 7.0g: 60mL, heated to 85 o C under the protection of argon, stirred and refluxed for 2-4d until the conversion of raw materials is complete, after filtering, wash the filter residue with acetonitrile, combine the filtrate and washing liquid, add 5.0g of silica gel , spin-dried and column separation, a white solid 2-methyl-4-phenylsulfone-6-hydroxymethylpyridine was obtained with a yield of 82.0%. 1 H-NMR (400 MHz, CDCl 3 ) δ ppm: 7.98 (2H, d), 7.69 (1H, s), 7.65 (1H, t), 7.59 (2H, t), 7.55 (1H, s), 4.80 (2H, s), 2.65 (3H, s).
5)2-甲基-4-苯砜基-6-溴甲基吡啶的合成,即路线中化合物6 5) Synthesis of 2-methyl-4-phenylsulfonyl-6-bromomethylpyridine, that is, compound 6 in the route
将上述2-甲基-4-苯砜基-6-羟甲基吡啶与氯仿混合,冰浴降至10 oC以下,搅拌下缓慢滴加三溴化磷和氯仿的混合液,2-甲基-4-苯砜基-6-羟甲基吡啶,三溴化磷、氯仿的用量分别为2.3g、1.4mL、35+15mL,然后撤冰浴,在50oC下反应2-5h直至原料转化完全,将反应液稀释至冰水中,2-甲基-4-苯砜基-6-羟甲基吡啶与冰水的质量比为2.3:80,用碳酸钾固体将体系调至pH为 8-9,依次用二氯甲烷萃取、无水硫酸钠干燥,过滤、旋干、柱分离后,得到白色固体2-甲基-4-苯砜基-6-溴甲基吡啶,产率96.3%。1H-NMR(400 MHz,CDCl3)δ ppm:7.98 (2H,d),7.73(1H,s),7.68(1H,t),7.60(2H,t),7.54(1H,s),4.55(2H,s),2.65(3H,s)。 Mix the above 2-methyl-4-phenylsulfonyl-6-hydroxymethylpyridine with chloroform, lower the ice bath to below 10 o C, slowly add the mixture of phosphorus tribromide and chloroform dropwise under stirring, 2-methyl Base-4-phenylsulfone-6-hydroxymethylpyridine, phosphorus tribromide, and chloroform were used in amounts of 2.3g, 1.4mL, and 35+15mL, respectively, and then the ice bath was removed, and the reaction was carried out at 50 o C for 2-5h until The raw material conversion is complete, the reaction solution is diluted into ice water, the mass ratio of 2-methyl-4-phenylsulfone-6-hydroxymethylpyridine to ice water is 2.3:80, and the system is adjusted to a pH of 8-9, sequentially extracted with dichloromethane, dried over anhydrous sodium sulfate, filtered, spin-dried, and column separated to obtain a white solid 2-methyl-4-phenylsulfone-6-bromomethylpyridine with a yield of 96.3 %. 1 H-NMR (400 MHz, CDCl 3 ) δ ppm: 7.98 (2H, d), 7.73 (1H, s), 7.68 (1H, t), 7.60 (2H, t), 7.54 (1H, s), 4.55 (2H, s), 2.65 (3H, s).
6)1, 1,-亚乙基双-2-咪唑啉的合成,即路线中化合物8 6) Synthesis of 1, 1 , -ethylene bis-2-imidazoline, that is, compound 8 in the route
将市售70%纯度的三乙烯四胺、N,N-二甲基甲酰胺二甲缩醛、甲苯混合,三乙烯四胺、N,N-二甲基甲酰胺二甲缩醛和甲苯的体积比为30:60:100,加热至85oC搅拌回流2-4h,旋除甲苯直至有白色固体析出为止,冷却至室温,析出大量固体,过滤后用四氢呋喃洗涤,红外灯干燥至恒重,得到白色固体1, 1,-亚乙基双-2-咪唑啉,产率73.9%。1H-NMR(400 MHz,CDCl3)δ ppm:6.81(2H,s),3.86(4H,td),3.27(8H,t);13C-NMR(100 MHz,CDCl3)δ ppm:157.32,55.06,48.41,46.43。 Mix commercially available triethylenetetramine, N,N-dimethylformamide dimethyl acetal, and toluene with a purity of 70%; The volume ratio is 30:60:100, heat to 85 o C, stir and reflux for 2-4h, spin off the toluene until a white solid precipitates, cool to room temperature, a large amount of solid precipitates, filter and wash with tetrahydrofuran, dry to constant weight with an infrared lamp , a white solid 1, 1 , -ethylenebis-2-imidazoline was obtained with a yield of 73.9%. 1 H-NMR (400 MHz, CDCl 3 ) δ ppm: 6.81 (2H, s), 3.86 (4H, td), 3.27 (8H, t); 13 C-NMR (100 MHz, CDCl 3 ) δ ppm: 157.32 , 55.06, 48.41, 46.43.
7)成环反应合成中间体,即路线中中间体9 7) Synthesis of an intermediate by ring formation reaction, that is, intermediate 9 in the route
将上述1, 1,-亚乙基双-2-咪唑啉、1,2-二溴乙烷、碳酸钾与乙腈混合,1, 1,-亚乙基双-2-咪唑啉、1,2-二溴乙烷、碳酸钾、乙腈的用量比为8.0g:5.8mL:5.0g:400mL,氩气保护下加热搅拌回流3h,待体系降温至50oC后过滤,将滤液旋干,得到黄色固体状中间体,产率77.7%。1H-NMR(400 MHz,D2O)δ ppm:4.63 (1H,s),3.71-3.94 (4H,m),3.30-3.53 (6H,m),2.51-3.22 (6H,m);13C-NMR(100 MHz,CDCl3)δ ppm:162.05,73.02,54.28,52.42,45.63,44.40。 Mix the above 1,1 , -ethylenebis-2-imidazoline, 1,2-dibromoethane, potassium carbonate and acetonitrile, 1,1 , -ethylenebis-2-imidazoline, 1,2 - The ratio of dibromoethane, potassium carbonate and acetonitrile is 8.0g: 5.8mL: 5.0g: 400mL, heated and stirred to reflux for 3h under the protection of argon, and filtered after the system is cooled to 50 o C, and the filtrate is spin-dried to obtain Yellow solid intermediate, yield 77.7%. 1 H-NMR (400 MHz, D 2 O) δ ppm: 4.63 (1H, s), 3.71-3.94 (4H, m), 3.30-3.53 (6H, m), 2.51-3.22 (6H, m); 13 C-NMR (100 MHz, CDCl 3 ) δ ppm: 162.05, 73.02, 54.28, 52.42, 45.63, 44.40.
8)1,4,7,10-四氮杂环十二烷的合成,即路线中化合物10 8) Synthesis of 1,4,7,10-tetraazacyclododecane, that is, compound 10 in the route
将上述中间体与氢氧化钾和水混合,中间体、氢氧化钾和水的用量比为10.0g:16.8g:80mL,升温至110oC搅拌回流2h至水解完全,旋除水直到有白色固体析出,冷却至室温析晶,过滤后滤渣用红外灯干燥至恒重,得到白色固体1,4,7,10-四氮杂环十二烷,产率73.7%。1H-NMR(400 MHz,CDCl3)δ ppm:2.68(16H,s);13C-NMR(100 MHz,CDCl3)δ ppm:46.5。 Mix the above intermediate with potassium hydroxide and water, the ratio of intermediate, potassium hydroxide and water is 10.0g: 16.8g: 80mL, heat up to 110 o C, stir and reflux for 2h until the hydrolysis is complete, spin off the water until there is a white The solid precipitated, cooled to room temperature and crystallized, and after filtration, the filter residue was dried to constant weight with an infrared lamp to obtain a white solid 1,4,7,10-tetraazacyclododecane with a yield of 73.7%. 1 H-NMR (400 MHz, CDCl 3 ) δ ppm: 2.68 (16H, s); 13 C-NMR (100 MHz, CDCl 3 ) δ ppm: 46.5.
9)1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶的合成,即路线中化合物13 9) Synthesis of 1,4,7,10-tetraazacyclododecane-1-(2-methyl-4-phenylsulfone-6-methylene)pyridine, namely compound 13 in the route
将上述1,4,7,10-四氮杂环十二烷和氯仿混合,氩气保护下,用滴液漏斗缓慢滴加步骤5)制得的2-甲基-4-苯砜基-6-溴甲基吡啶的氯仿溶液,1,4,7,10-四氮杂环十二烷、2-甲基-4-苯砜基-6-溴甲基吡啶、氯仿和无水碳酸钾的用量比为2.9g:3.7g:150mL:5.0g,反应36-60h直至2-甲基-4-苯砜基-6-溴甲基吡啶转化完全,然后加入无水碳酸钾,继续反应5h,过滤、旋干、柱分离后,得到淡黄色固体1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶,产率29.4%。1H-NMR(400 MHz,CDCl3)δ ppm:8.00-7.98 (2H,d),7.82(1H,s),7.65-7.60(1H,t),7.58-7.52(2H,t),7.43(1H,s),3.82(2H,s),2.86(4H,brs),2.69(8H,s),2.62(4H,brs);2.58(3H,s);1.25(3H,brs)。 Mix the above 1,4,7,10-tetraazacyclododecane and chloroform, and slowly add the 2-methyl-4-phenylsulfone- 6-bromomethylpyridine in chloroform, 1,4,7,10-tetraazacyclododecane, 2-methyl-4-phenylsulfone-6-bromomethylpyridine, chloroform and anhydrous potassium carbonate The dosage ratio is 2.9g: 3.7g: 150mL: 5.0g, react for 36-60h until the conversion of 2-methyl-4-phenylsulfone-6-bromomethylpyridine is complete, then add anhydrous potassium carbonate, continue to react for 5h , filtered, spin-dried, and column separated to obtain light yellow solid 1,4,7,10-tetraazacyclododecane-1-(2-methyl-4-phenylsulfone-6-methylene) Pyridine, yield 29.4%. 1 H-NMR (400 MHz, CDCl 3 ) δ ppm: 8.00-7.98 (2H, d), 7.82 (1H, s), 7.65-7.60 (1H, t), 7.58-7.52 (2H, t), 7.43 ( 1H, s), 3.82 (2H, s), 2.86 (4H, brs), 2.69 (8H, s), 2.62 (4H, brs); 2.58 (3H, s); 1.25 (3H, brs).
10)L-对甲苯磺酰乳酸乙酯的合成,即路线中化合物12 10) Synthesis of ethyl p-toluenesulfonyl lactylate, that is, compound 12 in the route
将L-乳酸乙酯、二氯甲烷和对甲苯磺酰氯混合,冰浴降温、搅拌,缓慢滴加三乙胺,L-乳酸乙酯、二氯甲烷、三乙胺、对甲苯磺酰氯的用量比为12.5g:80mL:18.6mL:20.2g,撤冰浴后于室温下继续反应3h,过滤出三乙胺盐酸盐,往滤液中加入前述三乙胺滴加量10%的三乙胺,室温反应8-10h以使原料转化完全,然后加入蒸馏水,蒸馏水与L-乳酸乙酯的用量比为150mL:12.5g,依次用二氯甲烷萃取、无水硫酸钠干燥,过滤、旋干、柱分离后,得到无色液体L-对甲苯磺酰乳酸乙酯,产率85.1%。1H-NMR(400 MHz,CDCl3)δ ppm:7.82 (2H,d),7.35(2H,d),4.39.(1H,q),4.11(2H,q),2.45(3H,s),1.51(3H,d),1.21(3H,t);13C-NMR(100 MHz,CDCl3)δ ppm:169.0, 145.0,133.3, 129.7, 129.0,74.1, 61.8, 21.6,, 18.4, 13.9。 Mix L-ethyl lactate, dichloromethane and p-toluenesulfonyl chloride, cool down in an ice bath, stir, slowly add triethylamine dropwise, the amount of L-ethyl lactate, dichloromethane, triethylamine, p-toluenesulfonyl chloride The ratio is 12.5g: 80mL: 18.6mL: 20.2g. After removing the ice bath, continue to react at room temperature for 3h, filter out triethylamine hydrochloride, and add 10% of the aforementioned triethylamine dropwise triethylamine to the filtrate , react at room temperature for 8-10 hours to complete the conversion of raw materials, then add distilled water, the ratio of distilled water to L-ethyl lactate is 150mL: 12.5g, sequentially extract with dichloromethane, dry with anhydrous sodium sulfate, filter, spin dry, After column separation, a colorless liquid ethyl p-toluenesulfonyl lactylate was obtained with a yield of 85.1%. 1 H-NMR (400 MHz, CDCl 3 ) δ ppm: 7.82 (2H, d), 7.35 (2H, d), 4.39. (1H, q), 4.11 (2H, q), 2.45 (3H, s), 1.51 (3H, d), 1.21 (3H, t); 13 C-NMR (100 MHz, CDCl 3 ) δ ppm: 169.0, 145.0, 133.3, 129.7, 129.0, 74.1, 61.8, 21.6, 18.4, 13.9.
11)1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶-2,3,4-三(S)-丙酸乙酯的合成,即路线中化合物14 11) 1,4,7,10-tetraazacyclododecane-1-(2-methyl-4-phenylsulfonyl-6-methylene)pyridine-2,3,4-tri(S) -Synthesis of ethyl propionate, i.e. compound 14 in the route
将步骤9)制得的1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶、无水碳酸钾、上述L-对甲苯磺酰乳酸乙酯和乙腈混合,1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶、无水碳酸钾、L-对甲苯磺酰乳酸乙酯、乙腈的用量比为1.02g:1.64g:3.25g:40mL,氩气保护下在55-60oC温度反应50-60h,过滤并旋干滤液、柱分离后得到淡黄色半固体1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶-2,3,4-三(S)-丙酸乙酯,产率85.5%。1H-NMR(400 MHz,CDCl3)δ ppm:8.02 (3H,brs),7.60(4H,brs),4.16(6H,brs),3.88-3.37(5H,m),2.96(6H,brs),2.64(13H,brs); 1.27(13H,brs)。 The 1,4,7,10-tetraazacyclododecane-1-(2-methyl-4-phenylsulfone-6-methylene)pyridine prepared in step 9), anhydrous potassium carbonate, The above L-toluenesulfonyl lactylate ethyl ester mixed with acetonitrile, 1,4,7,10-tetraazacyclododecane-1-(2-methyl-4-phenylsulfonyl-6-methylene) The ratio of pyridine, anhydrous potassium carbonate, L-ethyl p-toluenesulfonyl lactylate, and acetonitrile is 1.02g: 1.64g: 3.25g: 40mL, react at 55-60 o C for 50-60h under the protection of argon, and filter The filtrate was spin-dried and separated by a column to obtain light yellow semi-solid 1,4,7,10-tetraazacyclododecane-1-(2-methyl-4-phenylsulfone-6-methylene)pyridine -2,3,4-tri(S)-ethyl propionate, yield 85.5%. 1 H-NMR (400 MHz, CDCl 3 ) δ ppm: 8.02 (3H, brs), 7.60 (4H, brs), 4.16 (6H, brs), 3.88-3.37 (5H, m), 2.96 (6H, brs) , 2.64 (13H, brs); 1.27 (13H, brs).
12)1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶-2,3,4-三(S)-丙酸的合成,即路线中化合物15 12) 1,4,7,10-Tetraazacyclododecane-1-(2-methyl-4-phenylsulfone-6-methylene)pyridine-2,3,4-tri(S) -Synthesis of propionic acid, i.e. compound 15 in the route
将上述1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶-2,3,4-三(S)-丙酸乙酯、氢氧化钠、水和乙醇混合,1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶-2,3,4-三(S)-丙酸乙酯、氢氧化钠、水、乙醇的用量比为1.50g:0.50g:10mL:10mL,室温搅拌8-10h以使水解完全,然后用H+离子交换树脂将体系调至pH< 4,过滤后用甲醇洗涤滤渣,将滤液合并,浓缩至干,得到白色固体1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶-2,3,4-三(S)-丙酸,产率88.6%。1H-NMR(400 MHz,CDCl3)δ ppm:7.97-7.92(2H,d),7.89(1H,s),7.78(1H,s),7.72-7.66(1H,t),7.62-7.55(2H,t),4.21-3.47(5H,m),3.46-2.76(12H,m),2.75-2.44(7H,m),1.47(3H,s);1.27(3H,s);1.19-1.12(3H,d);13C-NMR(100 MHz,CDCl3)δ ppm:161.1,155.7,150.9,137.4,135.2,130.0,128.1,120.9,119.7,61.5,60.8,55.7,55.3,48.8,46.8,45.8,45.1,43.0,22.8,21.4,10.1,9.2,7.8。MS-ESI(-):632.3(M-1);1265.6(2M-1)。 The above 1,4,7,10-tetraazacyclododecane-1-(2-methyl-4-phenylsulfonyl-6-methylene)pyridine-2,3,4-tri(S) - Mixture of ethyl propionate, sodium hydroxide, water and ethanol, 1,4,7,10-tetraazacyclododecane-1-(2-methyl-4-phenylsulfone-6-methylene ) The dosage ratio of pyridine-2,3,4-tri(S)-propionate, sodium hydroxide, water and ethanol is 1.50g:0.50g:10mL:10mL, stir at room temperature for 8-10h to complete the hydrolysis, Then use H + ion exchange resin to adjust the system to pH<4, filter and wash the filter residue with methanol, combine the filtrates and concentrate to dryness to obtain white solid 1,4,7,10-tetraazacyclododecane-1 -(2-Methyl-4-phenylsulfonyl-6-methylene)pyridine-2,3,4-tri(S)-propionic acid, yield 88.6%. 1 H-NMR (400 MHz, CDCl 3 ) δ ppm: 7.97-7.92 (2H, d), 7.89 (1H, s), 7.78 (1H, s), 7.72-7.66 (1H, t), 7.62-7.55 ( 2H, t), 4.21-3.47 (5H, m), 3.46-2.76 (12H, m), 2.75-2.44 (7H, m), 1.47 (3H, s); 1.27 (3H, s); 1.19-1.12 ( 3H, d); 13 C-NMR (100 MHz, CDCl 3 ) δ ppm: 161.1, 155.7, 150.9, 137.4, 135.2, 130.0, 128.1, 120.9, 119.7, 61.5, 60.8, 55.7, 55.3, 48.8, 46.8, 45.8 , 45.1, 43.0, 22.8, 21.4, 10.1, 9.2, 7.8. MS-ESI (-): 632.3 (M-1); 1265.6 (2M-1).
13)1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶-2,3,4-三(S)-丙酸负离子-Tm3+配合物的合成,即路线中化合物16 13) 1,4,7,10-Tetraazacyclododecane-1-(2-methyl-4-phenylsulfonyl-6-methylene)pyridine-2,3,4-tri(S) -Synthesis of propionic acid anion-Tm 3+ complex, i.e. compound 16 in the route
将上述1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶-2,3,4-三(S)-丙酸、Tm(NO3)3 . 6H2O和水混合,1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶-2,3,4-三(S)-丙酸、Tm(NO3)3 . 6H2O与水的用量比为0.1263g:0.1839g:8.0mL,加热至100oC搅拌回流45h以使反应完全,冷却至室温后,加入水,用浓度为1mol/L的氢氧化钾溶液将体系调至pH为 8,搅拌5min,离心取上层清液,加入色谱纯甲醇,微波振荡使其充分溶解,过滤得无机盐并旋干,得到目标物白色固体1,4,7,10-四氮杂环十二烷-1-(2-甲基-4-苯砜基-6-亚甲基)吡啶-2,3,4-三(S)-丙酸负离子-Tm3+配合物0.1290g,产率92.5%。MS-ESI(-):798.2(M-1)。 The above 1,4,7,10-tetraazacyclododecane-1-(2-methyl-4-phenylsulfonyl-6-methylene)pyridine-2,3,4-tri(S) - Propionic acid, Tm(NO 3 ) 3 . 6H 2 O mixed with water, 1,4,7,10-tetraazacyclododecane-1-(2-methyl-4-phenylsulfone-6- Methylene) pyridine-2,3,4-tri(S)-propionic acid, Tm(NO 3 ) 3 . 6H 2 O and water in the ratio of 0.1263g: 0.1839g: 8.0mL, heated to 100 o C Stir and reflux for 45 hours to make the reaction complete. After cooling to room temperature, add water, adjust the system to pH 8 with a potassium hydroxide solution with a concentration of 1mol/L, stir for 5 minutes, centrifuge to take the supernatant, add chromatographically pure methanol, and microwave Shake to make it fully dissolved, filter the inorganic salt and spin dry to obtain the target product 1,4,7,10-tetraazacyclododecane-1-(2-methyl-4-phenylsulfone-6 -Methylene)pyridine-2,3,4-tri(S)-propionic acid anion-Tm 3+ complex 0.1290g, yield 92.5%. MS-ESI (-): 798.2 (M-1).
标签与蛋白的连接: Linkage of tags to proteins:
1)配制0.1mM的pH为6.4的ubiquitin G47C溶液,用2-(N-吗啡啉)乙磺酸缓冲液配制,含10%D2O,采集1H-15N HSQC谱图; 1) Prepare a 0.1mM ubiquitin G47C solution with a pH of 6.4, prepare it with 2-(N-morpholine)ethanesulfonic acid buffer, contain 10% D 2 O, and collect 1 H- 15 N HSQC spectra;
2)配制1.0mM的ubiquitin G47C溶液,用2-(N-吗啡啉)乙磺酸缓冲液配制,加入100mM的三(2-羧乙基)膦溶液(3 equiv)充分混合,再加入100.0mM的T1溶液(8 equiv)充分混合,调节pH为8.0,室温静置反应24小时,使用脱盐柱除去未反应的三(2-羧乙基)膦和探针T1,得到纯化的蛋白质-探针连接复合物。用2-(N-吗啡啉)乙磺酸缓冲液(含10%D2O)将连接产物ubiquitin G47C-Tm-T1稀释至0.1mM ,调节pH为6.4,采集1H-15N HSQC谱图。 2) Prepare 1.0mM ubiquitin G47C solution, prepare it with 2-(N-morpholine)ethanesulfonic acid buffer, add 100mM tris(2-carboxyethyl)phosphine solution (3 equiv) and mix well, then add 100.0mM The T 1 solution (8 equiv) was mixed thoroughly, adjusted to pH 8.0, left to stand at room temperature for 24 hours, and unreacted tris (2-carboxyethyl) phosphine and probe T 1 were removed using a desalting column to obtain a purified protein- Probe Ligation Complex. Dilute the ligation product ubiquitin G47C-Tm-T 1 to 0.1mM with 2-(N-morpholine)ethanesulfonic acid buffer (containing 10% D 2 O), adjust the pH to 6.4, and collect 1 H- 15 N HSQC spectrum picture.
上述所有核磁实验都是在25℃下,用Bruker-600MHz超导核磁共振谱仪采样。实验数据均用Topspin、Sparky和Corel DRAW软件处理完成。 All of the above NMR experiments were sampled at 25°C with a Bruker-600MHz superconducting NMR spectrometer. The experimental data were all processed by Topspin, Sparky and Corel DRAW software.
图5为蛋白质ubiquitin G47C与探针连接前的1H-15N HSQC图。 Fig. 5 is a 1 H- 15 N HSQC diagram of protein ubiquitin G47C before linking with a probe.
图6为ubiquitin G47C-Tm-T1复合物的1H-15N HSQC图。 Fig. 6 is the 1 H- 15 N HSQC chart of ubiquitin G47C-Tm-T 1 complex.
将图5图6对比可以发现: T1能产生很强的顺磁弛豫增强效应,使空间结构中位于其附近的残基的谱峰线宽变宽,峰强减弱,且与距离正相关。谱峰强度减弱的残基位于G47C附近,这表明此探针能与巯基特异性反应,可以很好的应用于顺磁核磁和电子磁共振等研究。 Comparing Figure 5 and Figure 6, it can be found that: T 1 can produce a strong paramagnetic relaxation enhancement effect, which broadens the spectral peak line width and weakens the peak intensity of the residues located near it in the spatial structure, and is positively correlated with the distance . The residue with weakened spectral peak intensity is located near G47C, which indicates that this probe can specifically react with sulfhydryl groups, and can be well applied to studies such as paramagnetic NMR and electron magnetic resonance.
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