CN104561082B - One plant of yeast Candida jeffriesii that can utilize xylose expression system - Google Patents
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Abstract
本发明涉及一株能够利用木糖的酵母Candida jeffriesii的表达系统,包括一种表达载体,从5’‑3’依次可操作性地连接有以下元件:pMD19‑Tsimple质粒骨架、rDNA同源重组序列、外源基因表达盒和筛选标记基因表达盒;外源基因表达盒自上游至下游依次包括启动子、外源基因插入酶切位点以及转录终止子;筛选标记基因表达盒包括启动子、抗生素抗性基因、转录终止子。本发明的表达载体可实现在Candida jeffriesii中的整合型稳定表达,对木糖利用酵母Candida jeffriesii的基础理论研究及产品开发具有重要的意义。
The present invention relates to an expression system of yeast Candida jeffriesii capable of utilizing xylose, comprising an expression vector, which is operably connected with the following elements sequentially from 5'-3': pMD19-Tsimple plasmid backbone, rDNA homologous recombination sequence , exogenous gene expression cassette and screening marker gene expression cassette; exogenous gene expression cassette includes promoter, exogenous gene insertion restriction site and transcription terminator from upstream to downstream; screening marker gene expression cassette includes promoter, antibiotic Resistance genes, transcription terminators. The expression vector of the present invention can realize integrated and stable expression in Candida jeffriesii, and has important significance for basic theoretical research and product development of xylose utilization yeast Candida jeffriesii.
Description
技术领域technical field
本发明涉及基因工程技术领域,尤其是涉及一种能够利用木糖的酵母Candidajeffriesii的表达系统及其构建方法及应用。The invention relates to the technical field of genetic engineering, in particular to an expression system of yeast Candidajeffriesii capable of utilizing xylose, a construction method and application thereof.
背景技术Background technique
在分子生物学、遗传学、生物化学、微生物学等学科发展的基础上,20世纪70年代出现了基因工程技术。该技术通过体外将核酸分子插入质粒或其他载体分子,构成遗传物质的新组合,并在导入宿主细胞后在新的遗传背景下得到稳定扩增和表达。功能基因的表达对研究其编码蛋白质结构与功能及其实际应用十分重要,其可置于不同表达系统中进行表达。目前,已构建了多种用于基因功能研究、蛋白表达等的表达系统,包括大肠杆菌表达系统、酵母表达系统、哺乳动物细胞表达系统等。而能否使目的基因表达成功,取决于合适的表达系统的选择。酵母是一种低等的单细胞真核生物,它既具有原核生物易于培养、繁殖快、便于基因工程操作等特点,同时又具有真核生物蛋白质加工、折叠、翻译后修饰等功能。因此,酵母现已成为现代分子生物学研究最重要的工具和模型,特别适合表达真核生物基因和制备有功能的蛋白质。On the basis of the development of molecular biology, genetics, biochemistry, microbiology and other disciplines, genetic engineering technology appeared in the 1970s. This technology constitutes a new combination of genetic material by inserting nucleic acid molecules into plasmids or other carrier molecules in vitro, and is stably amplified and expressed in a new genetic background after being introduced into host cells. The expression of functional genes is very important for the study of the structure and function of the encoded protein and its practical application, and it can be expressed in different expression systems. At present, a variety of expression systems for gene function research and protein expression have been constructed, including E. coli expression systems, yeast expression systems, and mammalian cell expression systems. Whether the target gene can be expressed successfully depends on the selection of an appropriate expression system. Yeast is a low-level single-celled eukaryotic organism. It not only has the characteristics of prokaryotic organisms such as easy cultivation, fast reproduction, and convenient genetic engineering operations, but also has the functions of eukaryotic protein processing, folding, and post-translational modification. Therefore, yeast has become the most important tool and model for modern molecular biology research, especially suitable for expressing eukaryotic genes and preparing functional proteins.
木质纤维素是地球上最丰富的可再生资源之一,可转化为清洁燃料乙醇、丁醇、大宗化学品乳酸、高附加值产品木糖醇、有机酸类以及微生物菌体蛋白等多种生物基产品,甚至可用于生产纤维素酶等多种工业用酶。其有效利用能够解决社会发展过程中所遇到的资源缺乏问题,因而受到人们的广泛关注。木糖是木质纤维素水解产物中含量仅次于葡萄糖的一种单糖,其高效率生物转化与利用是影响木质纤维素产业发展的关键因素之一。Lignocellulose is one of the most abundant renewable resources on the earth, which can be converted into clean fuel ethanol, butanol, bulk chemical lactic acid, high value-added product xylitol, organic acids and microbial cell protein, etc. It can even be used to produce various industrial enzymes such as cellulase. Its effective use can solve the problem of lack of resources encountered in the process of social development, so it has attracted widespread attention. Xylose is a monosaccharide that is second only to glucose in lignocellulose hydrolyzate, and its high-efficiency biotransformation and utilization is one of the key factors affecting the development of lignocellulose industry.
目前,已发现多种酵母能够利用甚至发酵木糖,其中研究较多的有树干毕赤酵母、休哈塔假丝酵母、嗜鞣管囊酵母等。经过多年的研究,酵母利用木糖的代谢机制逐渐清晰,相应遗传转化系统也在不断完善,使得基于基因表达、基因敲除等手段的基因工程技术在该类酵母中的应用成为可能。一方面可通过构建工程菌提高底物如木糖的转化效率,增加目标代谢产物产量;另一方面可通 过构建工程菌使其能够以纤维质原料为底物生产重要生物基产品如氨基酸、酶等。At present, a variety of yeasts have been found to be able to utilize and even ferment xylose, among which Pichia stipitis, Candida shohata, and Pachysomyces tannophilus have been studied more. After years of research, the metabolic mechanism of xylose utilization by yeast has gradually become clear, and the corresponding genetic transformation system has also been continuously improved, making it possible to apply genetic engineering technologies based on gene expression and gene knockout in this type of yeast. On the one hand, the conversion efficiency of substrates such as xylose can be improved by constructing engineered bacteria, and the yield of target metabolites can be increased; on the other hand, it can be used to produce important bio-based products such as amino acids and enzymes by constructing engineered bacteria that use cellulosic raw materials as substrates Wait.
Candida jeffriesii是新分离的能够利用木糖的酵母,系统发育分析表明该酵母和另一株能够高效利用木糖的酵母Spathaspora passalidarum互成姐妹群(NGUYEN N H,SUH S O,MARSHALL C J,et al.Morphological and ecological similarities:wood-boring beetles associated with novel xylose-fermenting yeasts,Spathasporapassalidarum gen.sp.nov.and Candida jeffriesii sp.nov.Mycol Res,2006,110(Pt10):1232-1241)。目前Candida jeffriesii基因水平上的研究尚处于起步阶段,急需一个可适用的遗传表达系统来进行更深入的研究。尽管市面上有多种应用于酿酒酵母、毕赤酵母等表达系统的表达载体,但该酵母属于利用木糖类酵母,使用特殊的基因编码系统,密码子CUG编码丝氨酸而非亮氨酸(Wohlbach DJ,Kuo A,Sato TK,Potts KM,Salamov AA,Labutti KM,Sun H,Clum A,Pangilinan JL,Lindquist EA,Lucas S,Lapidus A,Jin M,Gunawan C,Balan V,Dale BE,Jeffries TW,Zinkel R,Barry KW,Grigoriev IV,GaschAP.Comparative genomics of xylose-fermenting fungi for enhanced biofuelproduction.Proceedings of the National Academy of Sciences of the UnitedStates of America,2011,108(32):13212-13217.),因此上述常规表达载体很难通过修饰来适用于该酵母表达系统中。Candida jeffriesii is a newly isolated xylose-utilizing yeast. Phylogenetic analysis shows that this yeast is a sister group with another highly efficient xylose-utilizing yeast, Spathaspora passalidarum (NGUYEN N H, SUH S O, MARSHALL C J, et al. and ecological similarities: wood-boring beetles associated with novel xylose-fermenting yeasts, Spathaspora passalidarum gen. sp. nov. and Candida jeffriesii sp. nov. Mycol Res, 2006, 110(Pt10): 1232-1241). At present, the research on the gene level of Candida jeffriesii is still in its infancy, and an applicable genetic expression system is urgently needed for further research. Although there are a variety of expression vectors used in expression systems such as Saccharomyces cerevisiae and Pichia pastoris on the market, this yeast belongs to xylose-utilizing yeast and uses a special gene coding system. The codon CUG codes for serine instead of leucine (Wohlbach DJ, Kuo A, Sato TK, Potts KM, Salamov AA, Labutti KM, Sun H, Clum A, Pangilinan JL, Lindquist EA, Lucas S, Lapidus A, Jin M, Gunawan C, Balan V, Dale BE, Jeffries TW, Zinkel R,Barry KW,Grigoriev IV,GaschAP.Comparative genomics of xylose-fermenting fungi for enhanced biofuel production.Proceedings of the National Academy of Sciences of the United States of America,2011,108(32):13212-13217.), so the above Conventional expression vectors are difficult to adapt to the yeast expression system through modification.
因此,有必要构建适用于Candida jeffriesii自身的基因表达系统,在此基础上,可采用该基因表达系统对Candida jeffriesii进行基因工程改造或在该表达系统基础上挖掘Candida jeffriesii的优良基因信息,为构建新型酵母基因工程菌和筛选新型优良基因,如纤维二糖酶基因等,奠定基础,同时通过基因工程手段使Candida jeffriesii利用木糖转化生产人类有用产品,建立可再生资源循环利用的生物加工工艺成为可能。Therefore, it is necessary to construct a gene expression system suitable for Candida jeffriesii itself. On this basis, the gene expression system can be used to carry out genetic engineering of Candida jeffriesii or the excellent gene information of Candida jeffriesii can be excavated on the basis of the expression system, so as to construct New yeast genetically engineered bacteria and screening of new excellent genes, such as cellobiase gene, etc., lay the foundation. At the same time, through genetic engineering means, Candida jeffriesii can use xylose to convert xylose to produce useful products for human beings, and establish a bioprocessing technology for the recycling of renewable resources. possible.
发明内容Contents of the invention
针对现有技术存在的上述问题,本申请人提供了一株能够利用木糖的酵母Candida jeffriesii的表达系统。本发明的表达载体可实现在Candida jeffriesii中的整合型稳定表达,对木糖利用酵母Candida jeffriesii的基础理论研究及产品开发具有重要的意义。To solve the above-mentioned problems in the prior art, the applicant provides an expression system of yeast Candida jeffriesii that can utilize xylose. The expression vector of the present invention can realize integrated and stable expression in Candida jeffriesii, and has important significance for basic theoretical research and product development of xylose utilization yeast Candida jeffriesii.
本发明的技术方案如下:Technical scheme of the present invention is as follows:
本发明一方面涉及一株能够利用木糖的酵母Candida jeffriesii的表达系统,包括一种新型表达载体,其为环状,从5’-3’依次可操作性地连接有以下元件:In one aspect, the present invention relates to an expression system of yeast Candida jeffriesii capable of utilizing xylose, including a novel expression vector, which is circular and operably connected with the following elements sequentially from 5'-3':
pMD19-Tsimple质粒骨架、rDNA同源重组序列、外源基因表达盒和筛选标记基因表达盒;pMD19-Tsimple plasmid backbone, rDNA homologous recombination sequence, exogenous gene expression cassette and selection marker gene expression cassette;
所述外源基因表达盒自上游至下游依次包括启动子、外源基因插入酶切位点以及转录终止子;The exogenous gene expression cassette includes a promoter, an exogenous gene insertion restriction site and a transcription terminator sequentially from upstream to downstream;
所述筛选标记基因表达盒包括启动子、抗生素抗性基因、转录终止子。The selection marker gene expression box includes a promoter, an antibiotic resistance gene, and a transcription terminator.
所述能够利用木糖的酵母为Candida jeffriesii。The yeast capable of utilizing xylose is Candida jeffriesii.
所述的表达载体中的外源基因表达盒启动子和转录终止子的DNA序列来自酵母Spathaspora passalidarum,该酵母全基因组序列在NCBI(http://www.ncbi.nlm.nih.gov/)中的编号为NZ_AEIK00000000,其中所述酵母可为来自美国农业研究菌种保藏中心的细胞株NRRL Y-27907。The DNA sequence of the exogenous gene expression box promoter and transcription terminator in the described expression vector comes from yeast Spathaspora passalidarum, and the complete genome sequence of this yeast is in NCBI (http://www.ncbi.nlm.nih.gov/) No. NZ_AEIK00000000, wherein the yeast may be the cell strain NRRL Y-27907 from the American Agricultural Research Type Culture Collection.
优选的,所述的rDNA同源重组序列为18s rDNA,序列如SEQ ID NO:1所示。另一个选择是,所述的rDNA序列与SEQ ID NO:1的相似性不低于90%,优选为95%,更优为98%。Preferably, the rDNA homologous recombination sequence is 18s rDNA, the sequence of which is shown in SEQ ID NO:1. Another option is that the similarity between the rDNA sequence and SEQ ID NO: 1 is not less than 90%, preferably 95%, more preferably 98%.
所述外源基因表达盒中的启动子包括SpADHP、SpXYLP;转录终止子包括SpCYC1T、SpXYLT。The promoters in the exogenous gene expression cassette include SpADH P , SpXYL P ; the transcription terminators include SpCYC1 T , SpXYL T .
所述筛选标记基因表达盒中的启动子包括SpTEF1P;抗生素抗性基因可以是表达载体中常用的,包括潮霉素抗性基因、博来霉素抗性基因、G418;转录终止子包括SpCYC1T、ScCYC1T。The promoter in the expression cassette of the screening marker gene includes SpTEF1P ; the antibiotic resistance gene can be commonly used in the expression vector, including hygromycin resistance gene, bleomycin resistance gene, G418; the transcription terminator includes SpCYC1 T , ScCYC1 T .
所述的SpADHP启动子为Spathaspora passalidarum来源的乙醇脱氢酶基因ADH1启动子,该启动子的DNA序列如SEQ ID NO:2所示;The SpADH P promoter is the alcohol dehydrogenase gene ADH1 promoter of Spathaspora passalidarum source, and the DNA sequence of the promoter is shown in SEQ ID NO:2;
所述的SpXYLP启动子为Spathaspora passalidarum来源的木糖还原酶基因XYL启动子,该启动子的DNA序列如SEQ ID NO:3所示;The SpXYL P promoter is a xylose reductase gene XYL promoter derived from Spathaspora passalidarum, and the DNA sequence of the promoter is shown in SEQ ID NO:3;
所述的SpTEF1P启动子为Spathaspora passalidarum来源的转录起始因子基因TEF1启动子,该启动子的DNA序列如SEQ ID NO:4所示;The SpTEF1 P promoter is a transcription initiation factor gene TEF1 promoter derived from Spathaspora passalidarum, and the DNA sequence of the promoter is shown in SEQ ID NO:4;
所述的SpCYC1T终止子为Spathaspora passalidarum来源的细胞色素C基因CYC1终止子,该终止子的DNA序列如SEQ ID NO:5所示;The SpCYC1 T terminator is the cytochrome C gene CYC1 terminator derived from Spathaspora passalidarum, and the DNA sequence of the terminator is shown in SEQ ID NO:5;
所述的SpXYLT终止子为Spathaspora passalidarum来源的木糖还原酶基因XYL终止子,该终止子的DNA序列如SEQ ID NO:6所示。The SpXYL T terminator is the XYL terminator of the xylose reductase gene derived from Spathaspora passalidarum, and the DNA sequence of the terminator is shown in SEQ ID NO:6.
所述的ScCYC1T终止子为Saccharomyces cerevisiae来源的细胞色素C基因CYC1终止子,该终止子的DNA序列如SEQ ID NO:7所示。The ScCYC1 T terminator is the cytochrome C gene CYC1 terminator derived from Saccharomyces cerevisiae, and the DNA sequence of the terminator is shown in SEQ ID NO:7.
所述外源基因的DNA片段可包括所述外源基因和筛选标记基因,所述外源基因插入所述外源基因表达盒中启动子和转录终止子之间。在本发明的一个实施例中,所述外源基因为gfp基因,该基因的DNA序列如SEQ ID NO:11所示。The DNA fragment of the exogenous gene may include the exogenous gene and a selection marker gene, and the exogenous gene is inserted between the promoter and the transcription terminator in the expression cassette of the exogenous gene. In one embodiment of the present invention, the exogenous gene is gfp gene, the DNA sequence of which is shown in SEQ ID NO:11.
所述的筛选标记基因表达盒中可包括一个以上的标记基因,所述标记基因可为潮霉素B抗性基因、博来霉素抗性基因和/或G418;在本发明的一个实施方案中,所述标记基因是潮霉素B抗性基因。More than one marker gene can be included in the described screening marker gene expression cassette, and the marker gene can be hygromycin B resistance gene, bleomycin resistance gene and/or G418; in one embodiment of the present invention In , the marker gene is the hygromycin B resistance gene.
所述的潮霉素B抗性基因的DNA序列如SEQ ID NO:8所示。The DNA sequence of the hygromycin B resistance gene is shown in SEQ ID NO:8.
所述的博来霉素抗性基因的DNA序列如SEQ ID NO:9所示。The DNA sequence of the bleomycin resistance gene is shown in SEQ ID NO:9.
所述的G418的DNA序列如SEQ ID NO:10所示。The DNA sequence of G418 is shown in SEQ ID NO:10.
本发明所使用的酵母为一株能够利用木糖的酵母Candida jeffriesii。具体的,该酵母购自美国农业研究菌种保藏中心,保藏编号为NRRL Y-27738。The yeast used in the present invention is a strain of yeast Candida jeffriesii capable of utilizing xylose. Specifically, the yeast is purchased from the Agricultural Research Culture Collection of the United States, and the deposit number is NRRL Y-27738.
具体而言,发明人按照下述技术方案制备得到了新型表达载体:Specifically, the inventors have prepared a novel expression vector according to the following technical scheme:
以Spathaspora passalidarum基因组DNA为模板,以引物P1和P2进行PCR扩增获得18s rDNA同源重组序列;以引物P23和P24进行PCR扩增获得SpTEF1P启动子;以引物P25和P26进行PCR扩增获得SpADH1P启动子;以引物P27和P28进行PCR扩增获得SpXYLP启动子;以引物P29和P30进行PCR扩增获得SpCYC1T终止子;以引物P31和P32进行PCR扩增获得SpXYLT终止子。以PMD-hphm质粒DNA为模板,以引物P21和P22进行PCR扩增获得片段hphm-ScCYC1T。所述引物P1-P2的核苷酸序列如SEQ ID NO.13-14所示,所述P21-P32的核苷酸序列如SEQ IDNO.33-44所示。Using the genomic DNA of Spathaspora passalidarum as a template, the 18s rDNA homologous recombination sequence was obtained by PCR amplification with primers P1 and P2; the SpTEF1 P promoter was obtained by PCR amplification with primers P23 and P24; the PCR amplification with primers P25 and P26 was obtained SpADH1 P promoter; SpXYL P promoter was obtained by PCR amplification with primers P27 and P28; SpCYC1 T terminator was obtained by PCR amplification with primers P29 and P30; SpXYL T terminator was obtained by PCR amplification with primers P31 and P32. The fragment hph m -ScCYC1 T was obtained by PCR amplification using PMD-hph m plasmid DNA as a template and primers P21 and P22. The nucleotide sequences of the primers P1-P2 are shown in SEQ ID NO.13-14, and the nucleotide sequences of the P21-P32 are shown in SEQ ID NO.33-44.
以pMD19-Tsimple为骨架,将上述各片段连接,所述连接是在适当的限制酶酶切位点上进行的。具体连接方式为:在pMD19-Tsimple的EcoR V酶切位点连接18s rDNA后,沿着18s rDNA的方向依次连接外源基因表达盒启动子、外源基因表达盒转录终止子、SpTEF1P启动子、hphm-ScCYC1T。Using pMD19-Tsimple as the backbone, the above fragments were ligated, and the ligation was performed at appropriate restriction enzyme cutting sites. The specific connection method is: after connecting the 18s rDNA at the EcoR V restriction site of pMD19-Tsimple, connect the exogenous gene expression cassette promoter, exogenous gene expression cassette transcription terminator, and SpTEF1 P promoter in sequence along the direction of the 18s rDNA , hph m -ScCYC1 T .
酵母基因表达调控是一个非常复杂的过程,选择合适的启动子和转录终止子对外源蛋白的表达至关重要。本发明提供了可供外源蛋白表达的启动子和转录终止子组合,包括SpADHP-SpCYC1T、SpXYLP-SpCYC1T、SpADHP-SpXYLT、SpXYLP-SpXYLT、SpTEF1P-SpCYC1T、、SpXYLP-SpXYLT。The regulation of gene expression in yeast is a very complex process, and the selection of appropriate promoters and transcription terminators is crucial for the expression of foreign proteins. The present invention provides combinations of promoters and transcription terminators for exogenous protein expression, including SpADH P -SpCYC1 T , SpXYLP -SpCYC1 T , SpADH P -SpXYL T , SpXYLP -SpXYLT , SpTEF1 P -SpCYC1 T , , SpXYL P -SpXYL T .
所述启动子根据以下方法预测获得:The promoter was predicted according to the following method:
(1)根据Spathaspora passalidarum基因组序列,选择酵母表达系统中常用的启动子所属基因与上一个基因的开放阅读框之间的所有核苷酸片段;(1) According to the Spathaspora passalidarum genome sequence, select all nucleotide fragments between the gene of the promoter commonly used in the yeast expression system and the open reading frame of the previous gene;
(2)采用启动子在线测评软件,对可能的启动子序列进行在线预测;(2) Using online promoter evaluation software to predict possible promoter sequences online;
(3)根据高评分值的潜在启动子序列,设计引物扩增获得待测启动子序列。(3) According to the potential promoter sequence with high scoring value, design primers to amplify to obtain the promoter sequence to be tested.
所述终止子根据以下方法获得:The terminator is obtained according to the following method:
(1)根据Spathaspora passalidarum基因组序列,选择酵母表达系统中常用的终止子所属基因的开放阅读框后约300bp作为待测终止子序列。(1) According to the Spathaspora passalidarum genome sequence, select about 300 bp behind the open reading frame of the gene to which the terminator commonly used in the yeast expression system belongs as the terminator sequence to be tested.
(2)设计引物扩增获得所述待测终止子。(2) Design primers to amplify to obtain the terminator to be detected.
所述外源蛋白表达的启动子和转录终止子组合用于外源基因的功能表达。在实施例中,gfp基因插入所述外源蛋白表达的启动子和转录终止子之间。The promoter and transcription terminator for exogenous protein expression are used in combination for the functional expression of the exogenous gene. In an embodiment, the gfp gene is inserted between the promoter for expression of the foreign protein and the transcription terminator.
所述的基因表达载体整合于所述Candida jeffriesii宿主菌的基因组中。The gene expression vector is integrated into the genome of the Candida jeffriesii host bacterium.
所述Candida jeffriesii宿主菌是(但不限于)来自美国农业研究菌种保藏中心的细胞株NRRL Y-27738。The Candida jeffriesii host bacteria is (but not limited to) the cell strain NRRL Y-27738 from the American Agricultural Research Culture Collection.
在本发明的一个实施例中,所述Candida jeffriesii宿主菌为来自美国农业研究菌种保藏中心的Candida jeffriesii NRRL Y-27738。In one embodiment of the present invention, the Candida jeffriesii host bacterium is Candida jeffriesii NRRL Y-27738 from the American Agricultural Research Culture Collection.
本发明的另一个方面,提供了一种Candida jeffriesii基因表达系统的构建方法,包括以下步骤:Another aspect of the present invention provides a method for constructing a Candida jeffriesii gene expression system, comprising the following steps:
所述Candida jeffriesii基因表达系统的表达载体构建:The expression vector construction of described Candida jeffriesii gene expression system:
根据酵母Spathaspora passalidarum全基因组序列,调取Spathasporapassalidarum 18s rDNA部分序列作为同源重组位点。以Spathaspora passalidarum基因组DNA为模板,以引物P1和P2进行PCR扩增获得18s rDNA同源重组序列,同时在片段上游引入酶切位点EcoR I,下游引入酶切位点Bgl II、BamH I和Kpn I。将PCR产物纯化后克隆至质粒pMD19-Tsimple,获得重组质粒pMD-18srDNA。According to the whole genome sequence of yeast Spathaspora passalidarum, the partial sequence of Spathaspora passalidarum 18s rDNA was retrieved as the homologous recombination site. Using the genomic DNA of Spathaspora passalidarum as a template, the 18s rDNA homologous recombination sequence was obtained by PCR amplification with primers P1 and P2. At the same time, the restriction site EcoR I was introduced upstream of the fragment, and the restriction sites Bgl II, BamH I and Kpn were introduced downstream I. The PCR product was purified and cloned into the plasmid pMD19-Tsimple to obtain the recombinant plasmid pMD-18srDNA.
以PMD-hphm质粒DNA为模板,以引物P21和P22进行PCR扩增获得片段hphm-ScCYC1T,同时在片段上游引入BamH I、Pst I,下游引入Kpn I。将纯化的PCR产物和重组质粒pMD-18srDNA分别用BamH I和Kpn I双酶切,酶切产物连接获得重组质粒PR-hphm。Using PMD-hph m plasmid DNA as a template, the fragment hph m -ScCYC1 T was obtained by PCR amplification with primers P21 and P22, and BamH I and Pst I were introduced upstream of the fragment, and Kpn I was introduced downstream. The purified PCR product and the recombinant plasmid pMD-18srDNA were digested with BamH I and Kpn I respectively, and the digested products were ligated to obtain the recombinant plasmid PR-hph m .
以Spathaspora passalidarum基因组DNA为模板,以引物P23和P24进行PCR 扩增获得SpTEF1P启动子,同时在片段两端引入酶切位点BamH I和Pst I。将纯化的PCR产物和重组质粒PR-hphm分别用BamH I和Pst I双酶切,酶切产物连接获得重组质粒PRTH。Spathaspora passalidarum genomic DNA was used as a template, and primers P23 and P24 were used for PCR amplification to obtain the SpTEF1 P promoter, and restriction sites BamH I and Pst I were introduced at both ends of the fragment. The purified PCR product and the recombinant plasmid PR-hph m were double digested with BamH I and Pst I, respectively, and the digested products were ligated to obtain the recombinant plasmid PRTH.
以Spathaspora passalidarum基因组DNA为模板,以引物P25和P26进行PCR扩增获得SpADHP启动子;以引物P27和P28进行PCR扩增获得SpXYLP启动子;同时在片段的上游引入酶切位点Bgl II,下游引入酶切位点Sal I和BamH I。将纯化的PCR产物和重组质粒PRTH分别用Bgl II和Sal I双酶切,将酶切的重组质粒和PCR产物连接获得重组质粒PRATH和PRXTH。Using Spathaspora passalidarum genomic DNA as a template, the SpADH P promoter was obtained by PCR amplification with primers P25 and P26; the SpXYL P promoter was obtained by PCR amplification with primers P27 and P28; at the same time, the restriction site Bgl II was introduced upstream of the fragment , the restriction sites Sal I and BamH I were introduced downstream. The purified PCR product and recombinant plasmid PRTH were double-digested with Bgl II and Sal I, respectively, and the digested recombinant plasmid and PCR product were ligated to obtain recombinant plasmids PRATH and PRXTH.
以Spathaspora passalidarum基因组DNA为模板,以引物P29和P30进行PCR扩增获得SpCYC1T终止子;以引物P31和P32进行PCR扩增获得SpXYLT终止子。在片段上游引入酶切位点Sal I和Not I,在片段下游引入酶切位点BamH I。将纯化的PCR产物和重组质粒PRATH与PRXTH分别用Sal I和BamH I双酶切,酶切产物连接获得PR系列重组质粒PRACTH、PRAXTH、PRXCTH和PRXXTH。SpCYC1 T terminator was obtained by PCR amplification with primers P29 and P30 using Spathaspora passalidarum genomic DNA as a template; SpXYL T terminator was obtained by PCR amplification with primers P31 and P32. Restriction sites Sal I and Not I were introduced upstream of the fragment, and restriction site BamH I was introduced downstream of the fragment. The purified PCR product and recombinant plasmids PRATH and PRXTH were double-digested with Sal I and BamH I respectively, and the digested products were ligated to obtain PR series recombinant plasmids PRACTH, PRAXTH, PRXCTH and PRXXTH.
所述引物P1-P2的核苷酸序列如SEQ ID NO.13-14所示。The nucleotide sequences of the primers P1-P2 are shown in SEQ ID NO.13-14.
所述P21-P32的核苷酸序列如SEQ ID NO.33-44所示。The nucleotide sequences of P21-P32 are shown in SEQ ID NO.33-44.
宿主菌Candida jeffriesii的活化与培养。Activation and cultivation of host bacteria Candida jeffriesii.
PR系列重组质粒在宿主菌Candida jeffriesii中的遗传转化。Genetic transformation of PR series recombinant plasmids in the host strain Candida jeffriesii.
宿主菌Candida jeffriesii阳性转化子筛选。Screening of positive transformants of the host strain Candida jeffriesii.
所述Candida jeffriesii基因表达系统的构建方法,其中,所述表达载体是重组质粒PRACTH,其中外源基因表达盒的启动子和终止子分别为SpADHP和SpCYC1T。The construction method of the Candida jeffriesii gene expression system, wherein the expression vector is a recombinant plasmid PRACTH, wherein the promoter and terminator of the foreign gene expression cassette are SpADH P and SpCYC1 T respectively.
所述Candida jeffriesii基因表达系统的构建方法,其中,所述表达载体是重组质粒PRAXTH,其中外源基因表达盒的启动子和终止子分别为SpADHP和SpXYLT。The construction method of the Candida jeffriesii gene expression system, wherein the expression vector is a recombinant plasmid PRAXTH, wherein the promoter and terminator of the foreign gene expression cassette are SpADH P and SpXYL T respectively.
所述Candida jeffriesii基因表达系统的构建方法,其中,所述表达载体是重组质粒PRXCTH,其中外源基因表达盒的启动子和终止子分别为SpXYLP和SpCYC1T。The construction method of the Candida jeffriesii gene expression system, wherein the expression vector is a recombinant plasmid PRXCTH, wherein the promoter and terminator of the foreign gene expression cassette are SpXYLP and SpCYC1 T respectively.
所述Candida jeffriesii基因表达系统的构建方法,其中,所述表达载体是重组质粒PRXXTH,其中外源基因表达盒的启动子和终止子分别为SpXYLP和SpXYLT。The construction method of the Candida jeffriesii gene expression system, wherein the expression vector is a recombinant plasmid PRXXTH, wherein the promoter and terminator of the foreign gene expression cassette are SpXYL P and SpXYL T respectively.
所述Candida jeffriesii基因表达系统的构建方法,其中所述的遗传转化方法包括PEG-LiAC转化法、电转化法和原生质体转化法,优选的转化方法是PEG-LiAC转化法。The construction method of the Candida jeffriesii gene expression system, wherein the genetic transformation method includes PEG-LiAC transformation method, electric transformation method and protoplast transformation method, and the preferred transformation method is PEG-LiAC transformation method.
所述Candida jeffriesii基因表达系统的构建方法,其中,所述宿主菌Candidajeffriesii转化子筛选方法为抗性平板筛选,对经过初步筛选的转化子进行菌落PCR或基因组PCR检测,并最终通过检测外源蛋白活性或代谢产物的方法确定转化子。The construction method of the Candida jeffriesii gene expression system, wherein, the screening method of the host bacteria Candidajeffriesii transformants is resistance plate screening, and the initially screened transformants are subjected to colony PCR or genome PCR detection, and finally through the detection of foreign protein Transformants were identified by methods of activity or metabolites.
本发明提供了一种表达外源基因的方法,包括如下步骤:The invention provides a method for expressing foreign genes, comprising the steps of:
(1)提供所述的整合型Candida jeffriesii基因表达系统;(1) providing the integrated Candida jeffriesii gene expression system;
(2)将外源基因插入所述表达载体的外源基因插入酶切位点,获得重组表达载体;(2) Inserting the exogenous gene into the expression vector by inserting the exogenous gene into the restriction site to obtain a recombinant expression vector;
(3)将所述重组表达载体转化宿主菌Candida jeffriesii并在宿主菌中表达所述外源基因。(3) Transforming the recombinant expression vector into a host bacterium Candida jeffriesii and expressing the foreign gene in the host bacterium.
本发明还提供了一种代谢工程改造宿主菌Candida jeffriesii的方法,包括如下步骤:The present invention also provides a method for metabolic engineering host bacterium Candida jeffriesii, comprising the steps of:
(1)提供权利要求1所述的整合型Candida jeffriesii表达系统;(1) providing the integrated Candida jeffriesii expression system described in claim 1;
(2)将目标基因插入所述表达载体的外源基因插入酶切位点,获得重组表达载体;(2) inserting the foreign gene of the target gene into the expression vector into the restriction site to obtain the recombinant expression vector;
(3)将所述重组表达载体转化宿主菌Candida jeffriesii并在宿主菌中表达所述目标基因;(3) transforming the recombinant expression vector into the host bacterium Candida jeffriesii and expressing the target gene in the host bacterium;
(4)培养所述重组菌,检测所述重组菌代谢产物。(4) Cultivate the recombinant bacteria, and detect the metabolites of the recombinant bacteria.
发明的其他方面由于本文的公开内容,对本领域的技术人员而言是显而易见的。Other aspects of the invention will be apparent to those skilled in the art from the disclosure herein.
本发明有益的技术效果在于:The beneficial technical effects of the present invention are:
1、本发明所使用的酵母是一株新型利用木糖的酵母,具有高效的木糖利用能力和较强的乙醇生产能力,具有较好的工业应用前景和价值。然而该酵母属于利用木糖类假丝酵母,而该类酵母使用特殊的基因编码系统,密码子CUG编码丝氨酸而非亮氨酸,因此市面上应用于酿酒酵母、毕赤酵母等表达系统的表达载体无法适用于该木糖利用酵母。鉴于此,本发明人构建了适用于该酵母自身的一系列新型表达载体,采用该系列表达载体,可方便地对该酵母进行外源 蛋白的表达和代谢工程改造。1. The yeast used in the present invention is a novel xylose-utilizing yeast, which has high-efficiency xylose utilization ability and strong ethanol production ability, and has good industrial application prospect and value. However, this yeast belongs to the xylose-utilizing Candida, and this type of yeast uses a special gene coding system, the codon CUG codes for serine instead of leucine, so it is used in the expression of expression systems such as Saccharomyces cerevisiae and Pichia pastoris The vector was not suitable for this xylose-utilizing yeast. In view of this, the inventors constructed a series of novel expression vectors suitable for the yeast itself, and the expression of exogenous proteins and metabolic engineering of the yeast can be conveniently carried out by using the series of expression vectors.
2、本发明提供了用其他DNA分子转化Candida jeffriesii的方法,所述的DNA分子可来自在上述载体启动子和终止子之间连接Candida jeffriesii基因组片段所构成的文库中或合成的DNA分子。本发明从而可提供,能够用于表达基因多样性文库,产生能够从中筛选新的生物活性物质的产品的技术。2. The present invention provides a method for transforming Candida jeffriesii with other DNA molecules, said DNA molecules can come from the library or synthetic DNA molecules formed by linking Candida jeffriesii genome fragments between the above vector promoter and terminator. The present invention thus provides techniques that can be used to express gene diversity libraries to produce products from which new biologically active substances can be screened.
3、本发明所述的整合型表达载体中,尝试采用多个rDNA序列作为整合位点,但仅有其中一个序列表现出整合效应,该序列为18s rDNA的部分序列,且该位点表现出拷贝数高,稳定性好的特点,使得该系列整合型表达载体成为能够适用于Candida jeffriesii表达外源蛋白及代谢工程改造的酵母多拷贝整合型表达载体。3. In the integrated expression vector of the present invention, multiple rDNA sequences were tried to be used as integration sites, but only one of the sequences showed an integration effect, and this sequence was a partial sequence of 18s rDNA, and this site showed The characteristics of high copy number and good stability make this series of integrated expression vectors a yeast multi-copy integrated expression vector suitable for the expression of foreign proteins and metabolic engineering of Candida jeffriesii.
4、本发明所构建的新型表达载体中,对所使用的潮霉素B抗性基因、博来霉素抗性基因等抗性基因开放阅读框中多个CUG密码子进行定点突变,突变为UUG,对报告基因gfp开放阅读框中的CUG密码子进行了定点突变,突变为UUG,从而实现了该系列新型表达载体在酵母Candida jeffriesii中的有效转化和功能性表达。4. In the novel expression vector constructed by the present invention, multiple CUG codons in the open reading frames of resistance genes such as the hygromycin B resistance gene and bleomycin resistance gene used are subjected to site-directed mutation, and the mutation is UUG, the site-directed mutation of the CUG codon in the open reading frame of the reporter gene gfp was mutated into UUG, thus realizing the effective transformation and functional expression of this series of novel expression vectors in yeast Candida jeffriesii.
附图说明Description of drawings
图1为实施例1的定点突变后hph基因CDS序列(表示定点突变位点);Fig. 1 is hph gene CDS sequence ( Indicate site-directed mutagenesis site);
图2为实施例4的定点突变后gfp基因CDS序列表示定点突变位点);Fig. 2 is the gfp gene CDS sequence after the site-directed mutation of embodiment 4 Indicate site-directed mutagenesis site);
图3为实施例4的绿色荧光蛋白重组质粒PRACTH-gfpm的质粒图谱;Fig. 3 is the plasmid map of the green fluorescent protein recombinant plasmid PRACTH-gfp m of embodiment 4;
图4为实施例4的为菌绿色荧光蛋白重组质粒转化子菌落PCR验证图(M为Maker,泳道1-9为阳性转化子扩增结果,泳道10为阴性对照);Fig. 4 is that the bacteria green fluorescent protein recombinant plasmid transformant colony PCR verification figure of embodiment 4 (M is Maker, swimming lane 1-9 is positive transformant amplification result, and swimming lane 10 is negative control);
图5为实施例4的绿色荧光蛋白重组质粒PRACTH-gfpm转化Candida jeffriesii及GFP荧光显微镜检测(左图为暗场,右图为明场)。Fig. 5 shows the transformation of Candida jeffriesii with the green fluorescent protein recombinant plasmid PRACTH-gfp m in Example 4 and the GFP fluorescence microscope detection (the left picture is dark field, and the right picture is bright field).
具体实施方式Detailed ways
下面将结合实施例对本发明的技术方案进行详细阐述。应理解,这些实施例仅用于说明本发明,而不应视为限制本发明的范围。在不背离本发明精神和实质的情况下,对本发明方法、步骤或条件所作的修改或替换,均视为落入本发明的范围。The technical solutions of the present invention will be described in detail below in conjunction with the embodiments. It should be understood that these examples are only for illustrating the present invention and should not be construed as limiting the scope of the present invention. Any modifications or substitutions made to the methods, steps or conditions of the present invention without departing from the spirit and essence of the present invention are deemed to fall within the scope of the present invention.
下列实施例中未注明具体条件的实验方法,基本都按照常用克隆手册或制造商所建议的条件进行实验操作;所用试剂或仪器未注明生产商者,均为可以通过市购获得的常规产品。The experimental methods that do not indicate the specific conditions in the following examples are basically carried out in accordance with the commonly used cloning manuals or the conditions suggested by the manufacturer; the reagents or instruments used that do not indicate the manufacturer are all commercially available. product.
除非在本文中另作限定,本文所用的全部术语具有本发明所属领域的普通人员通常所理解的相同含义。Unless defined otherwise herein, all terms used herein have the same meaning as commonly understood by one of ordinary skill in the art to which this invention belongs.
在本发明中,术语“可操作地连接”是指两个或多个核酸序列的功能性的空间排列。例如:启动子序列被置于相对于目的基因核酸序列的特定位置,使得该目的基因的转录受到该启动子的引导,使表达变得可行,从而,启动子序列被“可操作地连接”到该核酸序列上。通常,术语“可操作地连接”是指被连接的DNA序列是相邻的,所述序列的连接是通过在适当的限制酶切位点上进行连接来实施的。如果所述位点不存在,可以使用根据常规方法合成的寡聚核苷酸衔接子或接头。In the present invention, the term "operably linked" refers to the functional spatial arrangement of two or more nucleic acid sequences. For example: the promoter sequence is placed at a specific position relative to the nucleic acid sequence of the target gene, so that the transcription of the target gene is guided by the promoter and expression becomes feasible, thus, the promoter sequence is "operably linked" to on the nucleic acid sequence. In general, the term "operably linked" means that the DNA sequences being linked are contiguous by ligation at appropriate restriction sites. If the site does not exist, oligonucleotide adapters or linkers synthesized according to conventional methods can be used.
实施例1:PR系列整合型表达载体的构建Example 1: Construction of PR series integrated expression vectors
一、重组质粒pMD-18s rDNA的构建1. Construction of recombinant plasmid pMD-18s rDNA
(1)根据Spathaspora passalidarum全基因组序列(GenBank accession NZ_AEIK00000000),设计两条引物截取Spathaspora passalidarum 18s rDNA部分序列作为同源重组位点。引物序列如下:引物P1下划线部分为EcoR I的识别位点,引物P2下划线部分由5’到3’端分别为Bgl II、BamH I和Kpn I的识别位点。(1) According to the whole genome sequence of Spathaspora passalidarum (GenBank accession NZ_AEIK00000000), two primers were designed to intercept the partial sequence of Spathaspora passalidarum 18s rDNA as the homologous recombination site. The primer sequences are as follows: the underlined part of primer P1 is the recognition site of EcoR I, and the underlined part of primer P2 is the recognition site of Bgl II, BamH I and Kpn I respectively from the 5' to 3' ends.
P1:5’GCCGGAATTCTGCCAGTAGTCATATGCTTGTCTC3’P1: 5'GCCGGAATTCTGCCAGTAGTCATATGCTTGTCTC3 '
P2:5’ATATTAGGGGTACCCGGGATCCGAAGATCTGTTGAAGAGCAATAAT3’P2: 5'ATATTAGG GGTACC CG GGATCC GA AGATCT GTTGAAGAGCAATAAT3'
(2)过夜培养Spathaspora passalidarum,收集细胞,分离、提取基因组DNA。(2) Cultivate Spathaspora passalidarum overnight, collect cells, separate and extract genomic DNA.
(3)以Spathaspora passalidarum基因组DNA为模板,以引物P1和P2进行PCR扩增。扩增条件为95℃预变性5min,94℃变性30s,62℃退火30s,72℃延伸1.5min,30个循环,72℃延伸5min。纯化回收PCR扩增产物后克隆至pMD19-Tsimple载体(购自大连TaKaRa公司),获得重组质粒pMD-18s rDNA。(3) Spathaspora passalidarum genomic DNA was used as a template, and PCR amplification was performed with primers P1 and P2. The amplification conditions were pre-denaturation at 95°C for 5 min, denaturation at 94°C for 30 s, annealing at 62°C for 30 s, extension at 72°C for 1.5 min, 30 cycles, and extension at 72°C for 5 min. The PCR amplified product was purified and recovered and then cloned into pMD19-Tsimple vector (purchased from Dalian TaKaRa Company) to obtain recombinant plasmid pMD-18s rDNA.
二、重组质粒PMD-hphm的构建Two, the construction of recombinant plasmid PMD-hph m
(1)根据质粒pRS303H(Taxis C,Knop M.System of centromeric,episomal,andintegrative vectors based on drug resistance markers for Saccharomycescerevisiae.BioTechniques,2006,40(1):73-78.)中潮霉素抗性基因表达盒序列设计引物P3和P4。(1) According to the expression of hygromycin resistance gene in plasmid pRS303H (Taxis C, Knop M. System of centromeric, episomal, and integrative vectors based on drug resistance markers for Saccharomycescerevisiae. BioTechniques, 2006, 40(1): 73-78.) Cassette sequences Design primers P3 and P4.
P3:5’ACATTTTGATGGCCGCACGG3’P3: 5'ACATTTTGATGGCCGCACGG3'
P4:5’AACTCCTTCCTTTTCGGTTAGAGCG 3’P4: 5'AACTCCTTCCTTTTCGGTTAGAGCG3'
(2)以pRS303H质粒DNA为模板,以引物P3和P4扩增hph表达盒片段,扩增条件为95℃预变性5min,94℃变性30s,55℃退火30s,72℃延伸1.5min,30个循环,72℃延伸5min。纯化回收上述片段后,克隆至pMD19-Tsimple载体,获得重组质粒PMD-hph。(2) Using the pRS303H plasmid DNA as a template, the hph expression cassette fragment was amplified with primers P3 and P4. The amplification conditions were pre-denaturation at 95°C for 5 minutes, denaturation at 94°C for 30 seconds, annealing at 55°C for 30 seconds, and extension at 72°C for 1.5 minutes, 30 pieces Cycle, extend at 72°C for 5 min. After the fragments were purified and recovered, they were cloned into the pMD19-Tsimple vector to obtain the recombinant plasmid PMD-hph.
(3)根据潮霉素抗性基因CDS中CUG密码子情况设计突变引物,其中所述引物序列中下划线部分为突变位点。(3) Design mutation primers according to the CUG codon in the hygromycin resistance gene CDS, wherein the underlined part in the primer sequence is the mutation site.
P5:5’GAGAAGTTTTTGATCGAAAAGTTCGACAGC 3’P5: 5' GAGAAGTTTT TTG ATCGAAAAGTTCGACAGC 3'
P6:5’GCTGTCGAACTTTTCGATCAAAAACTTCTC 3’P6: 5' GCTGTCGAACTTTTCGAT CAA AAACTTCTC 3'
P7:5’GACAGCGTCTCCGACTTGATGCAGCTCTCG 3’P7: 5' GACAGCGTCTCCGAC TTG ATGCAGCTCTCG 3'
P8:5’CGAGAGCTGCATCAAGTCGGAGACGCTGTC 3’P8: 5' CGAGAGCTGCAT CAA GTCGGAGACGCTGTC 3'
P9:5’GGGCGTGGATATGTCTTGCGGGTAAATAG 3’P9: 5' GGGCGTGGATATGTC TTG CGGGTAAATAG 3'
P10:5’CTATTTACCCGCAAGACATATCCACGCCC 3’P10: 5' CTATTTACCCG CAA GACATATCCACGCCC 3'
P11:5’AATTCAGCGAGAGCTTGACCTATTGCATCT 3’P11: 5' AATTCAGCGAGAGC TTG ACCTATTGCATCT 3'
P12:5’AGATGCAATAGGTCAAGCTCTCGCTGAATT 3’P12: 5' AGATGCAATAGGT CAA GCTCTCGCTGAATT 3'
P13:5’TTGCAAGACTTGCCTGAAACCGAATTGCCCGCTGTT 3’P13: 5' TTGCAAGAC TTG CCTGAAACCGAA TTG CCCGCTGTT 3'
P14:5’AACAGCGGGCAATTCGGTTTCAGGCAAGTCTTGCAA 3’P14: 5' AACAGCGGG CAA TTCGGTTTCAGG CAA GTCTTGCAA 3'
P15:5’AATTGCCCGCTGTTTTGCAGCCGGT 3’P15: 5' AATTGCCCGCTGTT TTG CAGCCGGT 3'
P16:5’ACCGGCTGCAAAACAGCGGGCAATT 3’P16: 5'ACCGGCTG CAAAACAGCGGGCAATT 3'
P17:5’AGGCTCTCGATGAGTTGATGCTTTGGGCCGAG 3’P17: 5' AGGCTCTCGATGAG TTG ATGCTTTGGGCCGAG 3'
P18:5’CTCGGCCCAAAGCATCAACTCATCGAGAGCCT 3’P18: 5' CTCGGCCCAAAGCAT CAA CTCATCGAGAGCCT 3'
P19:5’GCTCCAACAATGTCTTGACGGACAATGG 3’P19: 5'GCTCCAACAATGTC TTG ACGGACAATGG 3'
P20:5’CCATTGTCCGTCAAGACATTGTTGGAGC 3’P20: 5' CCATTGTCCGT CAA GACATTGTTGGAGC 3'
以质粒PMD-hph为模板,采用Stratagene定点突变试剂盒(购自安捷伦科技有限公司),以上述引物进行PCR扩增,获得环状PCR产物。扩增条件为:95℃预变性2min,95℃变性30s,55℃退火2min,68℃延伸3.5min,30个循环,68℃充分延伸5min。Using the plasmid PMD-hph as a template, Stratagene site-directed mutagenesis kit (purchased from Agilent Technologies Co., Ltd.) was used to perform PCR amplification with the above primers to obtain a circular PCR product. Amplification conditions were: pre-denaturation at 95°C for 2 minutes, denaturation at 95°C for 30 seconds, annealing at 55°C for 2 minutes, extension at 68°C for 3.5 minutes, 30 cycles, and full extension at 68°C for 5 minutes.
(4)将上述PCR产物纯化后用内切酶Dpn I于37℃消化30min,于65℃反应15min以失活内切酶Dpn I。将酶切产物纯化后,转化E.coli JM109感受态细 胞(购自北京全式金公司),涂布于LB(100μg/ml氨苄青霉素)平板上,挑选单菌落,提取质粒后送至生工生物工程(上海)股份有限公司进行测序,挑选突变位点正确的质粒。经过上述突变操作后,突变质粒命名为PMD-hphm,其中突变后hph的CDS序列如图1所示。(4) After the above PCR product was purified, it was digested with endonuclease Dpn I at 37° C. for 30 minutes, and reacted at 65° C. for 15 minutes to inactivate endonuclease Dpn I. After purification of the digested product, transform E.coli JM109 competent cells (purchased from Beijing Quanshijin Company), spread on LB (100 μg/ml ampicillin) plate, pick a single colony, extract the plasmid and send it to Sangong Bioengineering (Shanghai) Co., Ltd. conducts sequencing and selects the plasmid with the correct mutation site. After the above mutation operation, the mutant plasmid was named PMD-hph m , where the CDS sequence of the mutated hph is shown in FIG. 1 .
三、重组质粒PR-hphm的构建3. Construction of recombinant plasmid PR-hph m
(1)根据PMD-hphm质粒中潮霉素抗性基因表达盒序列,设计两条引物:引物P21下划线部分由5’到3’端分别为BamH I和Pst I的识别位点,引物P22下划线部分为Kpn I的识别位点。(1) According to the hygromycin resistance gene expression cassette sequence in the PMD-hph m plasmid, two primers were designed: the underlined part of primer P21 is the recognition site of BamH I and Pst I from the 5' to 3' ends respectively, and the underlined part of primer P22 Part of it is the recognition site of Kpn I.
P21:5’CGGGATCCAAACTGCAGATGGGTAAAAAGCCTGAACTCAC3’P21: 5'CG GGATCC AAA CTGCAG ATGGGTAAAAAGCCTGAACTCAC3'
P22:5’GGGGTACCAACTCCTTCCTTTTCGGTTAGAGCG3’P22: 5'GG GGTACC AACTCCTTCCTTTTCGGTTAGAGCG3'
(2)以PMD-hphm质粒DNA为模板,以引物P21和P22进行PCR扩增,获得PCR产物。扩增条件为95℃预变性5min,94℃变性30s,63℃退火30s,72℃延伸1.5min,30个循环,72℃延伸5min。(2) Using PMD-hph m plasmid DNA as a template, PCR amplification was performed with primers P21 and P22 to obtain PCR products. The amplification conditions were pre-denaturation at 95°C for 5 min, denaturation at 94°C for 30 s, annealing at 63°C for 30 s, extension at 72°C for 1.5 min, 30 cycles, and extension at 72°C for 5 min.
(3)将纯化的PCR产物和重组质粒pMD-18s rDNA分别用BamH I和Kpn I双酶切,将酶切产物分别纯化后过夜连接,转化E.coli JM109感受态细胞,涂布于LB(100μg/ml氨苄青霉素)平板上,挑选单菌落,提取质粒后BamH I和Kpn I双酶切验证,获得重组质粒PR-hphm。(3) The purified PCR product and the recombinant plasmid pMD-18s rDNA were digested with BamH I and Kpn I respectively, and the digested products were purified and ligated overnight, transformed into E.coli JM109 competent cells, and spread on LB ( 100 μg/ml ampicillin) plate, pick a single colony, extract the plasmid and verify it by double digestion with BamH I and Kpn I, and obtain the recombinant plasmid PR-hph m .
四、重组质粒PRTH的构建4. Construction of recombinant plasmid PRTH
(1)根据Spathaspora passalidarum全基因组序列(GenBank accession NZ_AEIK00000000)和在线数据库EMBL-EBI(http://www.ebi.ac.uk/)提供的序列信息,获得Spathaspora passalidarum转录起始因子和上一个基因开放阅读框之间的所有DNA序列。根据启动子软件(http://www.softberrv.com和http://www.cbs.dtu.dk/services/)对上述序列进行在线预测,之后根据所选序列酶切位点情况设计两条引物,调取Spathasporapassalidarum转录起始因子上游700bp左右作为启动子SpTEF1P:引物P23下划线部分为BamH I的识别位点,引物P24下划线部分为Pst I的识别位点。(1) According to the complete genome sequence of Spathaspora passalidarum (GenBank accession NZ_AEIK00000000) and the sequence information provided by the online database EMBL-EBI (http://www.ebi.ac.uk/), the transcription initiation factor and last gene of Spathaspora passalidarum were obtained All DNA sequences between open reading frames. According to the promoter software (http://www.softberrv.com and http://www.cbs.dtu.dk/services/), the above sequences were predicted online, and then two restriction sites were designed according to the selected sequences. For the primers, about 700 bp upstream of the Spathasporapassalidarum transcription initiation factor was used as the promoter SpTEF1 P : the underlined part of primer P23 is the recognition site of BamH I, and the underlined part of primer P24 is the recognition site of Pst I.
P23:5’CGGGATCCACCACTTACATAATAGAAAGAC 3’P23: 5'CG GGATCC ACCACTTACATAATAGAAAGAC 3'
P24:5’ACGAGCCTGCAGTTTTGATTGATTGATTG 3’P24: 5' ACGAGC CTGCAG TTTTGATTGATTGATTG 3'
(2)以Spathaspora passalidarum基因组DNA为模板,以引物P23和P24进行PCR扩增,获得PCR产物。扩增条件为95℃预变性5min,94℃变性30s, 55℃退火30s,72℃延伸50s,30个循环,72℃延伸5min。(2) Using Spathaspora passalidarum genomic DNA as a template, PCR amplification was performed with primers P23 and P24 to obtain PCR products. The amplification conditions were pre-denaturation at 95°C for 5 min, denaturation at 94°C for 30 s, annealing at 55°C for 30 s, extension at 72°C for 50 s, 30 cycles, and extension at 72°C for 5 min.
(3)将纯化的PCR产物和重组质粒PR-hphm分别用BamH I和Pst I双酶切,将酶切产物分别纯化后过夜连接,转化E.coli JM109感受态细胞,涂布于LB(100μg/ml氨苄青霉素)平板上,挑选单菌落,提取质粒后BamH I和Pst I双酶切验证,获得重组质粒PRTH。(3) The purified PCR product and the recombinant plasmid PR-hph m were digested with BamH I and Pst I respectively, and the digested products were purified and ligated overnight, transformed into E.coli JM109 competent cells, and spread on LB ( 100 μg/ml ampicillin) plate, pick a single colony, extract the plasmid and verify it by double digestion with BamH I and Pst I, and obtain the recombinant plasmid PRTH.
五、重组质粒PRATH和PRXTH的构建5. Construction of recombinant plasmids PRATH and PRXTH
(1)根据Spathaspora passalidarum全基因组序列(GenBank accession NZ_AEIK00000000)和在线数据库EMBL-EBI(http://www.ebi.ac.uk/)提供的序列信息,获得Spathaspora passalidarum乙醇脱氢酶与木糖还原酶分别和上一个基因开放阅读框之间的所有DNA序列。根据启动子软件(http://www.softberrv.com和http://www.cbs.dtu.dk/services/)对上述序列进行在线预测,之后根据所选序列酶切位点情况设计引物,调取Spathaspora passalidarum乙醇脱氢酶和木糖还原酶开放阅读框上游1000bp左右作为启动子,即SpADHP和SpXYLP:引物P25和P27下划线部分为Bgl II的识别位点,引物P26和P28下划线部分由5’到3’端分别为BamH I和Sal I的识别位点。(1) According to the complete genome sequence of Spathaspora passalidarum (GenBank accession NZ_AEIK00000000) and the sequence information provided by the online database EMBL-EBI (http://www.ebi.ac.uk/), obtain Spathaspora passalidarum alcohol dehydrogenase and xylose reduction Enzymes respectively and all DNA sequences between the open reading frame of the previous gene. According to the promoter software (http://www.softberrv.com and http://www.cbs.dtu.dk/services/), the above sequence is predicted online, and then primers are designed according to the restriction site of the selected sequence, Take about 1000 bp upstream of the open reading frames of Spathaspora passalidarum alcohol dehydrogenase and xylose reductase as promoters, namely SpADH P and SpXYL P : the underlined part of primers P25 and P27 is the recognition site of Bgl II, and the underlined part of primers P26 and P28 From the 5' to the 3' end are the recognition sites of BamH I and Sal I respectively.
P25:5’GCCGGAAGATCTGTAAATTAATGCTACATCAGTTGAGG 3’P25: 5' GCCGGA AGATCT GTAAATTAATGCTACATCAGTTGAGG 3'
P26:5’CGGGATCCACGCGTCGACTATATTTTATTTAGGAATT 3’P26: 5' CG GGATCC ACGC GTCGAC TATATTTTATTTAGGAATT 3'
P27:5’GCCGGAAGATCTGTGACATAGTTAACTATGGC 3’P27: 5' GCCGGA AGATCT GTGACATAGTTAACTATGGC 3'
P28:5’CGGGATCCACGCGTCGACTTTATTGTATTGTG 3’P28: 5' CG GGATCC ACGC GTCGAC TTTATTGTATTGTG 3'
(2)以Spathaspora passalidarum基因组DNA为模板,以引物P25和P26进行PCR扩增,获得片段SpADHP。扩增条件为95℃预变性5min,94℃变性30s,60℃退火30s,72℃延伸1min,30个循环,72℃延伸5min。(2) Using Spathaspora passalidarum genomic DNA as a template, PCR amplification was performed with primers P25 and P26 to obtain the fragment SpADH P . The amplification conditions were pre-denaturation at 95°C for 5 min, denaturation at 94°C for 30 s, annealing at 60°C for 30 s, extension at 72°C for 1 min, 30 cycles, and extension at 72°C for 5 min.
(3)以Spathaspora passalidarum基因组DNA为模板,以引物P27和P28进行PCR扩增,获得片段SpXYLP。扩增条件为95℃预变性5min,94℃变性30s,59℃退火30s,72℃延伸1min,30个循环,72℃延伸5min。(3) Using Spathaspora passalidarum genomic DNA as a template and primers P27 and P28 for PCR amplification, the fragment SpXYLP was obtained. The amplification conditions were pre-denaturation at 95°C for 5 min, denaturation at 94°C for 30 s, annealing at 59°C for 30 s, extension at 72°C for 1 min, 30 cycles, and extension at 72°C for 5 min.
(4)将纯化的片段SpADHP和重组质粒PRTH分别用Bgl II和BamH I双酶切,将酶切产物分别纯化后过夜连接,转化E.coli JM109感受态细胞,涂布于LB(100μg/ml氨苄青霉素)平板上,挑选单菌落,提取质粒后Bgl II和BamH I双酶切验证,凝胶电泳后显示1000bp左右条带的即正向连接,获得重组质粒PRATH。(4) Digest the purified fragment SpADH P and the recombinant plasmid PRTH with Bgl II and BamH I respectively, purify the digested products and connect them overnight, transform E.coli JM109 competent cells, and spread on LB (100 μg/ ml ampicillin) plate, pick a single colony, extract the plasmid and verify it by double enzyme digestion with Bgl II and BamH I, and gel electrophoresis shows that the band of about 1000bp is positively connected to obtain the recombinant plasmid PRATH.
(5)将纯化的片段SpXYLP和重组质粒PRTH分别用Bgl II和BamH I双酶切,将酶切产物分别纯化后过夜连接,转化E.coli JM109感受态细胞,涂布于LB(100μg/ml氨苄青霉素)平板上,挑选单菌落,提取质粒后Bgl II和BamH I双酶切验证,凝胶电泳后显示1000bp左右条带的即正向连接,获得重组质粒PRXTH。(5) Digest the purified fragment SpXYLP and the recombinant plasmid PRTH with Bgl II and BamH I, respectively, purify the digested products and connect them overnight, transform E.coli JM109 competent cells, and spread on LB (100 μg/ ml ampicillin) plate, pick a single colony, extract the plasmid and verify by double enzyme digestion with Bgl II and BamH I, after gel electrophoresis, the band of about 1000bp is forward connected, and the recombinant plasmid PRXTH is obtained.
六、PR系列整合型表达载体的构建6. Construction of PR series integrated expression vector
(1)根据Spathaspora passalidarum全基因组序列(GenBank accession NZ_AEIK00000000)和在线数据库EMBL-EBI(http://www.ebi.ac.uk/)提供的序列信息,获得Spathaspora passalidarum细胞色素C1和木糖还原酶开放阅读框下游序列。设计引物调取Spathaspora passalidarum细胞色素C1和木糖还原酶开放阅读框下游300bp左右作为转录终止子,即SpCYC1T和SpXYLT:引物P29和P31下划线部分由5’到3’端分别为Sal I和Not I的识别位点,引物P30和P32下划线部分为BamH I的识别位点。(1) According to the complete genome sequence of Spathaspora passalidarum (GenBank accession NZ_AEIK00000000) and the sequence information provided by the online database EMBL-EBI (http://www.ebi.ac.uk/), the cytochrome C1 and xylose reductase of Spathaspora passalidarum were obtained The downstream sequence of the open reading frame. Design primers to transfer Spathaspora passalidarum cytochrome C1 and about 300bp downstream of the open reading frame of xylose reductase as transcription terminators, namely SpCYC1 T and SpXYL T : the underlined parts of primers P29 and P31 are Sal I and The recognition site of Not I, the underlined part of primers P30 and P32 is the recognition site of BamH I.
P29:5’ACGCGTCGACATAAGAATGCGGCCGCGCTAACTTCAATTAGAAT3’P29: 5'ACGC GTCGA CATAAGAAT GCGGCCGCGCTAACTTCAATTAGAAT3 '
P30:5’CGGGATCCCATCACTATAAGCGAAATCGGGTTTC 3’P30: 5'CG GGATCC CATCACTATAAGCGAAATCGGGTTTC 3'
P31:5’ACGCGTCGACATAAGAATGCGGCCGCGTTTGATTCTAGTTTATAT3’P31: 5' ACGC GTCGAC ATAAGAAT GCGGCCGC GTTTGATTTCTAGTTTATAT3'
P32:5’GCGCGGATCCATAGTTAACTATGTCACTTGAACTC 3’P32: 5' GCGC GGATCC ATAGTTAACTATGTCACTTGAACTC 3'
(2)以Spathaspora passalidarum基因组DNA为模板,以引物P29和P30进行PCR扩增,获得片段SpCYC1T。扩增条件为95℃预变性5min,94℃变性30s,63℃退火30s,72℃延伸30s,30个循环,72℃延伸5min。(2) Using Spathaspora passalidarum genomic DNA as a template, PCR amplification was performed with primers P29 and P30 to obtain the fragment SpCYC1 T . The amplification conditions were pre-denaturation at 95°C for 5 min, denaturation at 94°C for 30 s, annealing at 63°C for 30 s, extension at 72°C for 30 s, 30 cycles, and extension at 72°C for 5 min.
(3)以Spathaspora passalidarum基因组DNA为模板,以引物P31和P32进行PCR扩增,获得片段SpXYLT。扩增条件为95℃预变性5min,94℃变性30s,61℃退火30s,72℃延伸30s,30个循环,72℃延伸5min。(3) Using Spathaspora passalidarum genomic DNA as a template, PCR amplification was performed with primers P31 and P32 to obtain the fragment SpXYL T . The amplification conditions were pre-denaturation at 95°C for 5 min, denaturation at 94°C for 30 s, annealing at 61°C for 30 s, extension at 72°C for 30 s, 30 cycles, and extension at 72°C for 5 min.
(4)将纯化的片段SpCYC1T和重组质粒PRATH分别用Sal I和BamH I双酶切,将酶切产物分别纯化后过夜连接,转化E.coli JM109感受态细胞,涂布于LB(100μg/ml氨苄青霉素)平板上,挑选单菌落,提取质粒后Sal I和BamH I双酶切验证,获得重组质粒PRACTH。(4) The purified fragment SpCYC1 T and the recombinant plasmid PRATH were digested with Sal I and BamH I respectively, and the digested products were purified and ligated overnight, transformed into E.coli JM109 competent cells, and spread on LB (100 μg/ ml ampicillin) plate, pick a single colony, extract the plasmid and verify it by double digestion with Sal I and BamH I, and obtain the recombinant plasmid PRACTH.
(5)将纯化的片段SpCYC1T和重组质粒PRXTH分别用Sal I和BamH I双 酶切,将酶切产物分别纯化后过夜连接,转化E.coli JM109感受态细胞,涂布于LB(100μg/ml氨苄青霉素)平板上,挑选单菌落,提取质粒后Sal I和BamH I双酶切验证,获得重组质粒PRXCTH。(5) The purified fragment SpCYC1 T and the recombinant plasmid PRXTH were digested with Sal I and BamH I respectively, and the digested products were purified and ligated overnight, transformed into E.coli JM109 competent cells, and spread on LB (100 μg/ ml ampicillin) plate, pick a single colony, extract the plasmid and verify it by double digestion with Sal I and BamH I, and obtain the recombinant plasmid PRXCTH.
(6)将纯化的片段SpXYLT和重组质粒PRATH分别用Sal I和BamH I双酶切,将酶切产物分别纯化后过夜连接,转化E.coli JM109感受态细胞,涂布于LB(100μg/ml氨苄青霉素)平板上,挑选单菌落,提取质粒后Sal I和BamH I双酶切验证,获得重组质粒PRAXTH。(6) Digest the purified fragment SpXYL T and the recombinant plasmid PRATH with Sal I and BamH I, respectively, purify the digested products and connect them overnight, transform E.coli JM109 competent cells, and spread on LB (100 μg/ ml ampicillin) plate, pick a single colony, extract the plasmid and verify it by double digestion with Sal I and BamH I to obtain the recombinant plasmid PRAXTH.
(7)将纯化的片段SpXYLT和重组质粒PRXTH分别用Sal I和BamH I双酶切,将酶切产物分别纯化后过夜连接,转化E.coli JM109感受态细胞,涂布于LB(100μg/ml氨苄青霉素)平板上,挑选单菌落,提取质粒后Sal I和BamH I双酶切验证,获得重组质粒PRXXTH。(7) The purified fragment SpXYL T and the recombinant plasmid PRXTH were digested with Sal I and BamH I, respectively, and the digested products were purified and ligated overnight, transformed into E.coli JM109 competent cells, and spread on LB (100 μg/ ml ampicillin) plate, pick a single colony, extract the plasmid and verify it by double enzyme digestion with Sal I and BamH I, and obtain the recombinant plasmid PRXXTH.
实施例2:PEG/LiAc介导的Candida jeffriesii转化方法的建立。Example 2: Establishment of PEG/LiAc-mediated transformation method of Candida jeffriesii.
以Candida jeffriesii NRRL Y-27738作为宿主菌,采用PEG/LiAc介导转化酵母的方法实施如下:Using Candida jeffriesii NRRL Y-27738 as the host bacterium, the method of transforming yeast mediated by PEG/LiAc is implemented as follows:
一、Candida jeffriesii NRRL Y-27738感受态的制备1. Preparation of Competent Candida jeffriesii NRRL Y-27738
(1)将冻存管保藏的Candida jeffriesii NRRL Y-27738接种于YPD培养基,摇瓶活化培养48h。(1) Inoculate the Candida jeffriesii NRRL Y-27738 stored in the cryopreservation tube into the YPD medium, and activate the shake flask for 48 hours.
(2)将活化好的菌液在YPD平板上划线培养,并4℃保存。(2) Streak the activated bacterial solution on the YPD plate and store it at 4°C.
(3)于YPD平板中挑取Candida jeffriesii NRRL Y-27738单菌落,接种于20mlYPD培养基中,于100ml摇瓶中30℃过夜培养。(3) Pick a single colony of Candida jeffriesii NRRL Y-27738 from the YPD plate, inoculate it in 20ml of YPD medium, and culture it overnight at 30°C in a 100ml shake flask.
(4)将过夜培养的新鲜菌液接种于50ml YPD培养基中,于250ml摇瓶中30℃,200rpm培养,至菌液OD600到1.2左右。(4) Inoculate 50ml of YPD culture medium with the fresh bacterial solution cultured overnight, and culture it in a 250ml shake flask at 30°C and 200rpm until the OD600 of the bacterial solution reaches about 1.2.
(5)5000rpm室温离心5min,收集菌体细胞。(5) Centrifuge at 5000 rpm for 5 minutes at room temperature to collect bacterial cells.
(6)将细胞重新悬浮于500μl 0.1mol/L的LiAc中,离心,弃上清,获得感受态细胞。(6) The cells were resuspended in 500 μl of 0.1 mol/L LiAc, centrifuged, and the supernatant was discarded to obtain competent cells.
二、线性化重组质粒的制备2. Preparation of linearized recombinant plasmid
(1)将含有重组表达质粒的E.coli接种于LB培养基,过夜培养。(1) Inoculate E.coli containing the recombinant expression plasmid in LB medium and culture overnight.
(2)收集E.coli菌体细胞,采用碱裂法提取重组质粒,具体方法参照博大泰克质粒提取试剂盒。(2) Collect E. coli bacterial cells, and extract recombinant plasmids by alkaline lysis method. For specific methods, refer to the Biotech Plasmid Extraction Kit.
(3)采用限制性内切酶Stu I单酶切重组质粒,酶切反应体系(50μL):40μL DNA,5μL buffer,1.5μL限制性内切酶Stu I,用双蒸水补足50μL,混匀后置于37℃恒温箱中酶切2h。(3) Single-digest the recombinant plasmid with restriction endonuclease Stu I, enzyme digestion reaction system (50 μL): 40 μL DNA, 5 μL buffer, 1.5 μL restriction endonuclease Stu I, make up 50 μL with double distilled water, mix well Afterwards, place in a 37°C incubator for enzyme digestion for 2 hours.
(4)纯化酶切产物,获得线性化重组质粒。(4) Purify the digested product to obtain a linearized recombinant plasmid.
三、PEG/LiAc法转化Candida jeffriesii NRRL Y-277383. Conversion of Candida jeffriesii NRRL Y-27738 by PEG/LiAc method
(1)在感受态细胞中顺序加入下列转化混合液:240μL PEG3350,36μL1.0mol/LLiAc,25μL鲑鱼精DNA,50μL待转化线性DNA,其中鲑鱼精DNA沸水浴10min后立即冰浴;(1) Add the following transformation mixture in order to the competent cells: 240 μL PEG3350, 36 μL 1.0mol/LLiAc, 25 μL salmon sperm DNA, 50 μL linear DNA to be transformed, wherein the salmon sperm DNA is boiled in water for 10 minutes and immediately ice-bathed;
(2)剧烈振荡每个反应管直至细胞完全混匀;(2) Shake each reaction tube vigorously until the cells are completely mixed;
(3)置于30℃温育1h;(3) Incubating at 30°C for 1 hour;
(4)置于42℃金属浴热击22min;(4) Heat shock in a metal bath at 42°C for 22 minutes;
(5)待降至室温后,5000rpm离心5min,弃上清;(5) After cooling down to room temperature, centrifuge at 5000rpm for 5min, discard the supernatant;
(6)加入1ml YPD培养基,于30℃后培养2h;(6) Add 1ml of YPD medium and incubate at 30°C for 2 hours;
(7)5000rpm离心5min,弃掉800μl上清,混匀菌体并涂布潮霉素B(100mg/mL)抗性平板,30℃培养3-4d,获得转化子。(7) Centrifuge at 5000 rpm for 5 min, discard 800 μl of supernatant, mix the cells and spread on a hygromycin B (100 mg/mL) resistant plate, culture at 30°C for 3-4 days to obtain transformants.
实施例3:电穿孔法介导的酵母Candida jeffriesii转化方法的建立Example 3: Establishment of the yeast Candida jeffriesii transformation method mediated by electroporation
以Candida jeffriesii NRRL Y-27738作为宿主菌,采用电穿孔法介导转化酵母的实施如下:Using Candida jeffriesii NRRL Y-27738 as the host bacterium, the electroporation method was used to mediate the transformation of yeast as follows:
一、Candida jeffriesii NRRL Y-27738电转感受态细胞的制备1. Preparation of Candida jeffriesii NRRL Y-27738 electroporation competent cells
(1)将冻存管保藏的Candida jeffriesii NRRL Y-27738接种于YPD培养基,摇瓶活化培养48h;(1) Inoculate the Candida jeffriesii NRRL Y-27738 stored in the cryopreservation tube into the YPD medium, and activate the shake flask for 48 hours;
(2)将活化好的菌液在YPD平板上划线培养,并4℃保存;(2) Streak the activated bacterial solution on the YPD plate and store it at 4°C;
(3)于YPD平板中挑取Candida jeffriesii NRRL Y-27738单菌落,接种于20mlYPD培养基中,于100ml摇瓶中30℃过夜培养;(3) Pick a single colony of Candida jeffriesii NRRL Y-27738 from the YPD plate, inoculate it in 20ml of YPD medium, and culture it overnight at 30°C in a 100ml shake flask;
(4)将过夜培养的新鲜菌液接种于50ml YPD培养基中,于250ml摇瓶中30℃,200rpm培养,至菌液OD600到1.2左右;(4) Inoculate the overnight cultured fresh bacterial solution into 50ml YPD medium, and culture it in a 250ml shake flask at 30°C and 200rpm until the OD600 of the bacterial solution reaches about 1.2;
(5)将菌液置于冰上30min,5000rpm,4℃离心5min,收集菌体细胞;(5) Place the bacterial solution on ice for 30 minutes, centrifuge at 5000 rpm, 4°C for 5 minutes, and collect bacterial cells;
(6)加入预冷的20ml双蒸水洗涤菌体2次,5000rpm,4℃离心5min,收集菌体细胞;(6) Add pre-cooled 20ml double distilled water to wash the bacteria twice, centrifuge at 5000rpm, 4°C for 5min, and collect the bacteria cells;
(7)加入20ml预冷的1.0mol/L山梨醇洗涤菌体2次,5000rpm,4℃离心5min,收集菌体细胞;(7) Add 20ml of pre-cooled 1.0mol/L sorbitol to wash the cells twice, centrifuge at 5000rpm, 4°C for 5min, and collect the cells;
(8)加入200μl预冷的1.0mol/L山梨醇混匀菌体细胞,获得感受态细胞。(8) Add 200 μl of pre-cooled 1.0 mol/L sorbitol to mix the bacterial cells to obtain competent cells.
二、线性化重组质粒的制备2. Preparation of linearized recombinant plasmid
(1)将含有重组表达质粒的E.coli接种于LB培养基,过夜培养。(1) Inoculate E.coli containing the recombinant expression plasmid in LB medium and culture overnight.
(2)收集E.coli菌体细胞,采用碱裂法提取重组质粒,具体方法参照博大泰克质粒提取试剂盒。(2) Collect E. coli bacterial cells, and extract recombinant plasmids by alkaline lysis method. For specific methods, refer to the Biotech Plasmid Extraction Kit.
(3)采用限制性内切酶Stu I单酶切重组质粒,酶切反应体系(50μL):40μL DNA,5μL buffer,1.5μL限制性内切酶Stu I,用双蒸水补足50μL,混匀后置于37℃恒温箱中酶切2h。(3) Single-digest the recombinant plasmid with restriction endonuclease Stu I, enzyme digestion reaction system (50 μL): 40 μL DNA, 5 μL buffer, 1.5 μL restriction endonuclease Stu I, make up 50 μL with double distilled water, mix well Afterwards, place in a 37°C incubator for enzyme digestion for 2 hours.
(4)纯化酶切产物,获得线性化重组质粒。(4) Purify the digested product to obtain a linearized recombinant plasmid.
三、Candida jeffriesii NRRL Y-27738的电转化3. Electroconversion of Candida jeffriesii NRRL Y-27738
(1)取100μl电转化感受态细胞和10μl DNA混合,加入到0.2cm电转杯中;(1) Mix 100 μl of electroporation competent cells and 10 μl of DNA into a 0.2 cm electroporation cup;
(2)电转杯冰浴5min,设定条件1500v,电击5s,进行电转化;(2) The electroporation cup was bathed in ice for 5 minutes, the setting condition was 1500v, and the electroporation was performed for 5s;
(3)立即向电转杯中加入1ml预冷的1.0mol/L山梨醇,转移至培养箱30℃温育1h;(3) Immediately add 1ml of pre-cooled 1.0mol/L sorbitol to the electroporation cup, transfer to the incubator at 30°C and incubate for 1h;
(4)5000rpm离心5min,弃上清;(4) centrifuge at 5000rpm for 5min, discard the supernatant;
(5)加入1ml YPD培养基,混匀菌体细胞,于培养箱30℃后培养2h;(5) Add 1ml of YPD medium, mix the cells, and incubate in an incubator at 30°C for 2 hours;
(6)5000rpm离心5min,弃掉800μl上清,混匀菌体并涂布潮霉素B(100mg/mL)抗性平板,30℃培养3-4d,获得转化子。(6) Centrifuge at 5000 rpm for 5 min, discard 800 μl of supernatant, mix the cells and spread on a hygromycin B (100 mg/mL) resistant plate, culture at 30°C for 3-4 days to obtain transformants.
实施例4:PR系列整合型表达载体在表达外源基因方面的应用。Example 4: Application of PR series integrative expression vectors in expressing foreign genes.
一、构建绿色荧光蛋白重组表达载体1. Construction of recombinant expression vector for green fluorescent protein
(1)根据绿色荧光蛋白的基因序列,设计引物:引物P33下划线部分为Sal I的识别位点,引物P34下划线部分为Not I的识别位点。(1) Design primers according to the gene sequence of green fluorescent protein: the underlined part of primer P33 is the recognition site of Sal I, and the underlined part of primer P34 is the recognition site of Not I.
P33:5’ACGCGTCGACATGGGTAAGGGAGAAGAACTTTTCAC 3’P33: 5' ACGC GTCGAC ATGGGTAAGGGAGAAGAACTTTTCAC 3'
P34:5’ATAAGAATGCGGCCGCTTATTTGTATAGTTCATCCATGCCATG 3’P34: 5'ATAAGAATGCGGCCGCTTATTTGTATAGTTCATCCATGCCATG3 '
(2)以绿色荧光蛋白基因的DNA为模板,以引物P33和P34进行PCR扩增,获得基因gfp。扩增条件为95℃预变性5min,94℃变性30s,62℃退火30s, 72℃延伸45s,30个循环,72℃延伸5min。(2) Using the DNA of the green fluorescent protein gene as a template, PCR amplification was performed with primers P33 and P34 to obtain the gene gfp. The amplification conditions were pre-denaturation at 95°C for 5 min, denaturation at 94°C for 30 s, annealing at 62°C for 30 s, extension at 72°C for 45 s, 30 cycles, and extension at 72°C for 5 min.
(3)将纯化的gfp片段克隆至pMD19-Tsimple载体,转化E.coli JM109感受态细胞,涂布于LB(100μg/ml氨苄青霉素)平板上,挑选单菌落,提取质粒后Sal I和Not I双酶切验证,获得重组质粒pMD-gfp。(3) Cloning the purified gfp fragment into the pMD19-Tsimple vector, transforming E.coli JM109 competent cells, spreading it on LB (100 μg/ml ampicillin) plate, picking a single colony, and extracting the plasmid Sal I and Not I Double digestion verification, the recombinant plasmid pMD-gfp was obtained.
(4)由于gfp基因序列开放阅读框中存在密码子CUG,而酵母Candida jeffriesii使用特殊的编码系统,即密码子CUG编码丝氨酸而非亮氨酸。因此有必要对gfp基因进行定点突变,将密码子CUG突变为密码子UUG。(4) Since the codon CUG exists in the open reading frame of the gfp gene sequence, the yeast Candida jeffriesii uses a special coding system, that is, the codon CUG encodes serine instead of leucine. Therefore, it is necessary to carry out site-directed mutation on the gfp gene, and mutate the codon CUG to the codon UUG.
(5)以gfp基因序列CDS中601位的碱基C作为突变位点,设计单点突变引物:引物P35和P36下划线部分为突变位点。(5) Using base C at position 601 in the CDS of the gfp gene sequence as the mutation site, design single-point mutation primers: the underlined parts of primers P35 and P36 are the mutation sites.
P35:5’ TACCAGACAACCATTACTTGTCCACACAATCTGCC3’P35: 5' TACCAGACAACCATTAC TTG TCCACACAATCTGCC3'
p36:5’ GGCAGATTGTGTGGACAAGTAATGGTTGTCTGGTA 3’p36: 5' GGCAGATTGTGTGGA CAA GTAATGGTTGTCTGGTA 3'
(6)以重组质粒pMD-gfp为模板,采用Stratagene定点突变试剂盒,以引物P35和P36进行PCR扩增,获得环状PCR产物。扩增条件为:95℃预变性2min,95℃变性30s,55℃退火2min,68℃延伸3.5min,30个循环,68℃充分延伸5min;(6) Using the recombinant plasmid pMD-gfp as a template, Stratagene site-directed mutagenesis kit was used to perform PCR amplification with primers P35 and P36 to obtain a circular PCR product. The amplification conditions are: pre-denaturation at 95°C for 2 minutes, denaturation at 95°C for 30 seconds, annealing at 55°C for 2 minutes, extension at 68°C for 3.5 minutes, 30 cycles, and full extension at 68°C for 5 minutes;
(7)将上述PCR产物纯化后用内切酶Dpn I于37℃消化30min,于65℃反应15min以失活内切酶Dpn I。将酶切产物纯化后,转化E.coli JM109感受态细胞,涂布于LB(100μg/ml氨苄青霉素)平板上,挑选单菌落,提取质粒后送至生工生物工程(上海)股份有限公司进行测序,挑选突变位点正确的质粒,命名为pMD-gfpm。gfp基因定点突变后DNA序列为SEQ IDNO:11,如图2所示。(7) After the above PCR product was purified, it was digested with endonuclease Dpn I at 37° C. for 30 minutes, and reacted at 65° C. for 15 minutes to inactivate endonuclease Dpn I. After the digestion product was purified, it was transformed into E.coli JM109 competent cells, spread on LB (100 μg/ml ampicillin) plate, picked a single colony, extracted the plasmid and sent it to Sangon Bioengineering (Shanghai) Co., Ltd. Sequence, select the plasmid with the correct mutation site, and name it pMD-gfp m . The DNA sequence after site-directed mutation of the gfp gene is SEQ ID NO: 11, as shown in FIG. 2 .
(8)将重组质粒pMD-gfpm和PRACTH分别用Sal I和Not I双酶切。gfp片段酶切纯化后与质粒PRACTH的酶切产物过夜连接,转化E.coli JM109菌株,涂布于LB(100μg/ml氨苄青霉素)平板上,挑选单菌落,提取质粒后Sal I和Not I双酶切验证,获得绿色荧光蛋白重组表达载体PRACTH-gfpm,质粒图谱如图3所示。(8) Digest the recombinant plasmids pMD-gfp m and PRACTH with Sal I and Not I, respectively. After digestion and purification of the gfp fragment, it was ligated overnight with the enzyme digestion product of the plasmid PRACTH, transformed into E.coli JM109 strain, spread on LB (100 μg/ml ampicillin) plate, picked a single colony, extracted the plasmid and doubled Sal I and Not I. After enzyme digestion verification, the green fluorescent protein recombinant expression vector PRACTH-gfp m was obtained, and the plasmid map is shown in Figure 3.
二、构建Candida jeffriesii重组菌2. Construction of Candida jeffriesii recombinant bacteria
将经Stu I线性化的质粒PRACTH-gfpm按实施例2或实施例3中所述方法,转化到Candida jeffriesii NRRL Y-27738中,获得转化子。The plasmid PRACTH-gfp m linearized by Stu I was transformed into Candida jeffriesii NRRL Y-27738 according to the method described in Example 2 or Example 3 to obtain transformants.
三、转化子筛选与验证3. Screening and verification of transformants
(1)通过高浓度潮霉素B抗性平板筛选转化子。将绿色荧光蛋白重组表达 载体转化Candida jeffriesii NRRL Y-27738后获得的转化子转接于更高浓度潮霉素B(200μg/mL)抗性平板上,30℃培养2-3d,采用相同的方法连续转接3次,获得纯培养转化子菌株。(1) Transformants were screened by a high-concentration hygromycin B resistance plate. The transformant obtained after transforming the recombinant expression vector of green fluorescent protein into Candida jeffriesii NRRL Y-27738 was transferred to a higher concentration hygromycin B (200 μg/mL) resistance plate, cultured at 30°C for 2-3 days, and the same method was used Transplanted 3 times in a row to obtain pure culture transformant strains.
(2)阳性转化子的菌落PCR验证。以引物P21和P22配制PCR扩增体系,并在体系中加入微量微波处理的转化子菌体。PCR扩增条件为95℃预变性5min,94℃变性30s,63℃退火30s,72℃延伸1.5min,30个循环,72℃延伸5min。PCR产物经琼脂糖凝胶电泳显示1100bp左右条带,如图4所示,与DNA片段hphm-ScCYC1T条带大小相符合。(2) Colony PCR verification of positive transformants. A PCR amplification system was prepared with primers P21 and P22, and a small amount of microwave-treated transformant cells were added to the system. PCR amplification conditions were pre-denaturation at 95°C for 5 min, denaturation at 94°C for 30 s, annealing at 63°C for 30 s, extension at 72°C for 1.5 min, 30 cycles, and extension at 72°C for 5 min. The PCR product was subjected to agarose gel electrophoresis to show a band of about 1100 bp, as shown in Figure 4, which was consistent with the size of the DNA fragment hph m -ScCYC1T band.
(3)阳性转化子的荧光检测。将步骤(1)中获得的纯培养转化子菌株接种于YPD培养基中,摇瓶30℃培养18h后,收集菌体,双蒸水洗涤菌体细胞2次并重悬于双蒸水中。吸取少量悬液置于载玻片上,盖上盖玻片,在荧光显微镜下用油镜观察并拍照。如图5所示,可以观察到细胞发出绿色荧光。(3) Fluorescent detection of positive transformants. The purely cultured transformant strain obtained in step (1) was inoculated in YPD medium, and after shaking the flask for 18 hours at 30°C, the bacteria were collected, washed twice with double distilled water and resuspended in double distilled water. Draw a small amount of suspension and place it on a glass slide, cover it with a cover glass, observe and take pictures under a fluorescent microscope with an oil lens. As shown in Figure 5, the cells can be observed to emit green fluorescence.
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