CN104316705B - Preparation method and application of hybridization indicator 5, 7-dinitro-2-sulfo-acridone - Google Patents
Preparation method and application of hybridization indicator 5, 7-dinitro-2-sulfo-acridone Download PDFInfo
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- PAMJVQRAKKUTJF-UHFFFAOYSA-N 5,7-dinitro-9-oxo-10H-acridine-2-sulfonic acid Chemical compound [N+](=O)([O-])C1=C2NC=3C=CC(=CC=3C(C2=CC(=C1)[N+](=O)[O-])=O)S(=O)(=O)O PAMJVQRAKKUTJF-UHFFFAOYSA-N 0.000 title claims abstract description 31
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Abstract
Description
技术领域technical field
本发明涉及一种杂交指示剂5,7-二硝基-2-磺基-吖啶酮的制备方法和用途,属于有机合成领域。The invention relates to a preparation method and application of a hybridization indicator 5,7-dinitro-2-sulfo-acridone, belonging to the field of organic synthesis.
背景技术Background technique
肺癌是世界上威胁人类生命的主要恶性肿瘤之一,近年来其发病率和死亡率逐年上升,已居恶性肿瘤之首,其中非小细胞肺癌(non-smallcelllungcancer,NSCLC)占所有肺癌的80%。目前,针对肺癌治疗的研究已取得较大进展,但肺癌总的5年生存率仍只有15%,即使ⅠA期NSCL患者,术后5年生存率也只有80%。因此,肺癌的早期快速诊断对于治疗方案的选择及预后评价至关重要。Lung cancer is one of the major malignant tumors that threaten human life in the world. In recent years, its morbidity and mortality have increased year by year, ranking first among malignant tumors. Among them, non-small cell lung cancer (NSCLC) accounts for 80% of all lung cancers. . At present, research on the treatment of lung cancer has made great progress, but the overall 5-year survival rate of lung cancer is still only 15%. Even for patients with stage IA NSCL, the 5-year survival rate after surgery is only 80%. Therefore, early and rapid diagnosis of lung cancer is very important for the selection of treatment options and prognosis evaluation.
近年来,随着生物化学、分子生物学及免疫学等技术的发展,对肺癌研究的不断深入,医学工作者们在肺癌肿瘤标志物筛选方面取得了突破性进展,目前已发现多种与肺癌相关的蛋白、基因等标志物,特别是肿瘤标志物c-erbB-2等。有研究人员发现,c-erbB-2在肺癌患者血清中异常表达,且性质稳定,正逐渐成为可靠的早期诊断肺癌的新型肿瘤标志物之一。许多学者通过PCR方法从基因水平来研究与NSCLC关系密切的基因标志物。虽然PCR可实现基因表达的定量检测,但由于存在操作过程繁琐、成本高、需要专门的技术人员等缺点,限制了检测在临床肺癌诊断中的应用。因此,开发一种简便、快速、灵敏、经济的c-erbB-2检测技术具有极其广阔的应用前景,将有望解决NSCLC早期诊断这一临床迫切的实际问题,具有极其重要的意义。In recent years, with the development of technologies such as biochemistry, molecular biology and immunology, the research on lung cancer has continued to deepen, and medical workers have made breakthroughs in the screening of tumor markers for lung cancer. Related protein, gene and other markers, especially tumor marker c-erbB-2 and so on. Some researchers have found that c-erbB-2 is abnormally expressed in the serum of lung cancer patients and is stable in nature. It is gradually becoming one of the new tumor markers for reliable early diagnosis of lung cancer. Many scholars have studied the gene markers closely related to NSCLC from the gene level by PCR method. Although PCR can realize the quantitative detection of gene expression, its application in the clinical diagnosis of lung cancer is limited due to the disadvantages of cumbersome operation process, high cost, and the need for specialized technicians. Therefore, the development of a simple, rapid, sensitive and economical c-erbB-2 detection technology has extremely broad application prospects, and it is expected to solve the urgent clinical problem of early diagnosis of NSCLC, which is of great significance.
生物传感器是利用生物特异性识别过程来探测蛋白质、基因、抗体、毒素等的传感检测器,是新一代的生物检测技术。其中电化学生物传感是由生物材料(DNA、酶、抗原、细胞、组织等)作为敏感元件,电极作为转换元件,以电势或电流为特征检测信号的传感器,其生物分子识别的专一性决定了此传感器具有高度选择性。因此,学者们设计了很多用于检测DNA的电化学生物传感策略。虽然这些传感策略能实现DNA的灵敏特异性检测,但还存在如下缺陷:1)复杂耗时,缺乏经济性。2)传统指示剂存在价格昂贵,与单双链DNA都会发生作用,杂交检测特异性不高。3)稳定性较差。4)某些官能团标记方法,背景信号大,灵敏度低。5)假阳性和假阴性的现象仍不可避免。这些电生物传感策略在实际样本检测中想取代临床传统技术,仍面临巨大的困难。因此,有必要继续研究一种电化学生物传感新方法。Biosensors are sensory detectors that use biologically specific recognition processes to detect proteins, genes, antibodies, toxins, etc., and are a new generation of biological detection technology. Among them, electrochemical biosensing is a sensor that uses biological materials (DNA, enzymes, antigens, cells, tissues, etc.) as sensitive elements, electrodes as conversion elements, and detects signals with potential or current characteristics. Determined that this sensor is highly selective. Therefore, scholars have designed many electrochemical biosensing strategies for detecting DNA. Although these sensing strategies can achieve sensitive and specific detection of DNA, there are still the following defects: 1) It is complex, time-consuming and lacks economy. 2) The existence of traditional indicators is expensive, and it will interact with both single- and double-stranded DNA, and the specificity of hybridization detection is not high. 3) Poor stability. 4) Certain functional group labeling methods have large background signals and low sensitivity. 5) False positives and false negatives are still inevitable. These electrical biosensing strategies still face great difficulties in replacing traditional clinical techniques in actual sample detection. Therefore, it is necessary to continue to study a new method for electrochemical biosensing.
下面所述的为本发明人设计并合成一种新型的具有较高水溶性和电化学活性的吖啶酮类衍生物-“5,7-二硝基-2-磺基-吖啶酮”,并以此为杂交指示剂,研制出了一种测定c-erbB-2相关基因的电化学传感器——基于“膜修饰电极”、“核酸外切酶III辅助靶序列循环”和“DNA长距式自组装”三重信号放大技术的电化学生物传感器:将L-赖氨酸修饰在玻碳电极表面,通过共价修饰法将发卡探针DNA固定到聚赖氨酸的末端羧基上。通过探针DNA与靶DNA的杂交,再经过核酸外切酶III切割循环后,修饰电极表面留有柔性短寡核苷酸序列,其可与辅助探针基因AP1和AP2杂交形成超级三明治结构,选择5,7-二硝基-2-磺基-吖啶酮作为杂交指示剂,其可嵌入到DNA的双螺旋结构中,成功实现三重信号放大技术的电化学生物传感器的研制。由于聚赖氨酸含有羧基,有利于DNA在电极表面的固定,另外“聚赖氨酸良好的导电性”、“核酸外切酶III辅助靶序列循环”及“DNA长距式自组装”都极大地增强了传感器的检测灵敏度。从而建立了高灵敏度、高特异性的c-erbB-2相关基因检测方法。今后,我们将在此新技术成功应用于肺癌早期诊断的基础上,推广应用于其他类型肿瘤的早期诊断及筛选抗肿瘤新药工作中,因而本发明具有巨大的潜在应用价值和深远的意义。The following design and synthesis of a new type of acridone derivatives - "5,7-dinitro-2-sulfo-acridone" with high water solubility and electrochemical activity for the inventors , and using this as a hybridization indicator, developed an electrochemical sensor for the determination of c-erbB-2 related genes - based on "membrane modified electrode", "exonuclease III assisted target sequence recycling" and "DNA long Electrochemical biosensor based on distance self-assembly" triple signal amplification technology: L-lysine is modified on the surface of glassy carbon electrodes, and the hairpin probe DNA is fixed to the terminal carboxyl group of polylysine by covalent modification. Through the hybridization of probe DNA and target DNA, and after exonuclease III cleavage cycle, the surface of the modified electrode leaves a flexible short oligonucleotide sequence, which can hybridize with auxiliary probe genes AP1 and AP2 to form a super sandwich structure. 5,7-Dinitro-2-sulfo-acridone was selected as the hybridization indicator, which can be embedded in the double helix structure of DNA, and the electrochemical biosensor with triple signal amplification technology was successfully developed. Since polylysine contains carboxyl groups, it is beneficial for the immobilization of DNA on the electrode surface. In addition, "polylysine has good conductivity", "exonuclease III assists target sequence circulation" and "DNA long-distance self-assembly" are all The detection sensitivity of the sensor is greatly enhanced. Thus, a highly sensitive and specific c-erbB-2 related gene detection method was established. In the future, on the basis of the successful application of this new technology in the early diagnosis of lung cancer, we will extend it to the early diagnosis of other types of tumors and the screening of new anti-tumor drugs. Therefore, the present invention has huge potential application value and far-reaching significance.
发明内容Contents of the invention
本发明的目的在于提供一种杂交指示剂5,7-二硝基-2-磺基-吖啶酮的制备方法和用途,提供一种基于“膜修饰电极”、“核酸外切酶III辅助靶序列循环”和“DNA长距式自组装”三重信号放大技术的电化学生物传感器的制备方法,并将其用于肺癌相关靶序列c-erbB-2相关基因的超高灵敏、高特异性检测。The object of the present invention is to provide a preparation method and application of a hybridization indicator 5,7-dinitro-2-sulfo-acridone, to provide a method based on "membrane modified electrode", "exonuclease III assisted The preparation method of electrochemical biosensors based on the triple signal amplification technology of "target sequence recycling" and "DNA long-distance self-assembly", and it is used for ultra-high sensitivity and high specificity of lung cancer-related target sequence c-erbB-2 related genes detection.
为实现上述目的,本发明采用如下技术方案:To achieve the above object, the present invention adopts the following technical solutions:
一种杂交指示剂5,7-二硝基-2-磺基-吖啶酮,所述5,7-二硝基-2-磺基-吖啶酮结构式为。A hybridization indicator 5,7-dinitro-2-sulfo-acridone, the structural formula of the 5,7-dinitro-2-sulfo-acridone is .
一种杂交指示剂5,7-二硝基-2-磺基-吖啶酮的制备方法,所述步骤为:称取0.6g吖啶酮,加入5mL浓H2SO4,搅拌溶解后,加热至100℃反应30min,趁热将溶液倒入冰水(0~4℃)中,固体析出,过滤干燥得到浅绿色固体2-磺基-吖啶酮;称取0.6g2-磺基-吖啶酮,加入3mL36%乙酸,再依次加入0.36mL的浓硝酸和0.8mL的冰醋酸,于56~60℃下搅拌反应2h,趁热将溶液倒入冰水中,固体析出,过滤,用10~20mL水冲洗,并用无水乙醇进一步重结晶纯化,得到黄色针状粉末5,7-二硝基-2-磺基-吖啶酮。A method for preparing a hybridization indicator 5,7-dinitro-2-sulfo-acridone, the steps are: weigh 0.6 g of acridone, add 5 mL of concentrated H 2 SO 4 , stir to dissolve, Heat to 100°C and react for 30 minutes, pour the solution into ice water (0~4°C) while it is still hot, the solid precipitates, filter and dry to obtain light green solid 2-sulfo-acridone; weigh 0.6g 2-sulfo-acridone Pyridone, add 3mL of 36% acetic acid, then add 0.36mL of concentrated nitric acid and 0.8mL of glacial acetic acid in turn, stir and react at 56~60°C for 2h, pour the solution into ice water while it is hot, the solid precipitates, filter, and use 10~ Rinse with 20 mL of water, and further recrystallize and purify with absolute ethanol to obtain 5,7-dinitro-2-sulfo-acridone as a yellow needle-like powder.
一种杂交指示剂5,7-二硝基-2-磺基-吖啶酮在电化学传感器上的应用。Application of a hybridization indicator 5,7-dinitro-2-sulfo-acridone in an electrochemical sensor.
所述的电化学传感器制备方法包括:1)电极的预处理The preparation method of the electrochemical sensor includes: 1) pretreatment of the electrode
将玻碳电极在0.05μm的Al2O3粉上打磨,并先后用无水乙醇和双蒸水超声震荡5min,以除去附在电极表面上的杂质,用10mM铁氰化钾表征电极表面,直至前后峰位电压差值小于80V,蒸馏水洗净擦干后取出,氮气吹干;The glassy carbon electrode was ground on 0.05 μm Al 2 O 3 powder, and ultrasonically oscillated with absolute ethanol and double distilled water for 5 minutes to remove impurities attached to the electrode surface, and the electrode surface was characterized with 10 mM potassium ferricyanide. Until the peak voltage difference between the front and back is less than 80V, wash with distilled water, dry it, take it out, and blow it dry with nitrogen;
2)探针修饰电极的制备2) Preparation of probe-modified electrodes
将处理后的玻碳电极置于含0.01M/L赖氨酸的pH8.0、0.2MPBS缓冲液中,用循环伏安法电合修饰聚赖氨酸膜,再用双蒸水彻底冲洗电极并在室温下干燥,得到聚赖氨酸修饰电极,将聚赖氨酸修饰电极倒置,表面滴加20μL偶联活化剂,室温自然蒸干,然后用超纯水清洗10s,除掉未结合在修饰电极表面的偶联活化剂,氮气吹干待用;然后在电极表面滴加10μL1μM发卡结构的探针基因P溶液,室温自然蒸干,用超纯水清洗除掉未结合在电极表面的探针基因P,再用10mMpH7.0PBS缓冲液清洗,室温干燥,制得发卡探针修饰电极;Place the treated glassy carbon electrode in pH 8.0, 0.2MPBS buffer solution containing 0.01M/L lysine, use cyclic voltammetry to electrically modify the polylysine membrane, and then rinse the electrode thoroughly with double distilled water and dried at room temperature to obtain a polylysine modified electrode. Invert the polylysine modified electrode, drop 20 μL of coupling activator on the surface, evaporate to dryness at room temperature, and then wash with ultrapure water for 10 seconds to remove unbound Modify the coupling activator on the surface of the electrode, dry it with nitrogen gas for use; then drop 10 μL of 1 μM probe gene P solution with a hairpin structure on the surface of the electrode, evaporate to dryness at room temperature, and wash with ultrapure water to remove the probe that is not bound to the surface of the electrode. Needle gene P, wash with 10mM pH 7.0 PBS buffer solution, and dry at room temperature to obtain a hairpin probe modified electrode;
3)酶辅助靶序列循环3) Enzyme-assisted target sequence recycling
将发卡探针修饰电极置于一系列浓度的靶序列c-erbB-2相关基因(1aM~100fM)溶液中,室温下杂交1h后清洗吹干,将杂交后的电极置于10U核酸外切酶III的缓冲液中,37℃下反应30min后,清洗吹干待用;Place the hairpin probe modified electrode in a series of concentrations of the target sequence c-erbB-2 related gene (1aM~100fM) solution, hybridize at room temperature for 1 hour, wash and dry, and place the hybridized electrode in 10U exonuclease In the buffer solution of III, react at 37°C for 30 minutes, wash and dry for use;
4)DNA长距式自组装及电化学检测4) DNA long-distance self-assembly and electrochemical detection
分别取10μL1μM的辅助探针AP1和AP2溶液(由上海生工生物工程技术服务有限公司合成)滴涂在上述电极表面,室温下进行DNA长距式自组装,2h后清洗吹干;分别在含有5mMK3[Fe(CN)6]/K4[Fe(CN)6](1:1)的100mMpH7.0PBS+0.1MKCl缓冲溶液测量不同修饰电极的CV曲线,扫描速率为0.05V/s,采样间隔为0.001V,静置时间为2s;将DNA长距式自组装后的电极置于含100μM5,7-二硝基-2-磺基-吖啶酮DSA的pH7.0PBS缓冲溶液中,20min后清洗吹干;而后将电极置于pH5.0磷酸盐PB缓冲溶液中扫描CV和方波伏安法(SWVs)曲线。Take 10 μL of 1 μM auxiliary probes AP1 and AP2 solutions (synthesized by Shanghai Sangon Bioengineering Technology Service Co., Ltd.) and drop-coat them on the surface of the above electrodes, carry out DNA long-distance self-assembly at room temperature, wash and dry after 2 hours; 5mM K 3 [Fe(CN) 6 ]/K 4 [Fe(CN) 6 ](1:1) 100mMpH7.0PBS+0.1MKCl buffer solution to measure the CV curves of different modified electrodes, the scan rate is 0.05V/s, sampling The interval is 0.001V, and the resting time is 2s; the electrode after DNA long-distance self-assembly is placed in a pH7.0 PBS buffer solution containing 100μM 5,7-dinitro-2-sulfo-acridone DSA for 20min After washing and drying; then place the electrode in pH5.0 phosphate PB buffer solution to scan CV and square wave voltammetry (SWVs) curves.
所述循环伏安法的条件为:电压-1.0~+2.4V,扫描速率为100mVs-1,表征圈数为14圈。The conditions of the cyclic voltammetry are: voltage -1.0~+2.4V, scan rate 100mVs-1, and number of characterization cycles is 14 cycles.
所述偶联活化剂为含5mM的EDC和8mM的NHS的pH7.4磷酸缓冲液。The coupling activator is pH 7.4 phosphate buffer containing 5 mM EDC and 8 mM NHS.
所述CV法的扫描速率为0.50V/s,采样间隔为0.001V,静置时间为2s;方波伏安法的扫描电位范围为-0.2V~+0.15V,电位增量为0.005V,幅度为0.025V。The scan rate of the CV method is 0.50V/s, the sampling interval is 0.001V, and the rest time is 2s; the scan potential range of the square wave voltammetry is-0.2V~+0.15V, and the potential increment is 0.005V, The amplitude is 0.025V.
所述探针P序列为5'-NH2-AAAAATTTATTTGATAGGCGAACTATTTGTTTTTAATATCAAATAATGGTT-3';所述探针AP1序列为5'-CAAAATATATGATAGGCGAA-3';探针AP2序列为5'-ATATATTTTGTTCGCCTATC-3';The sequence of the probe P is 5'-NH2-AAAAATTTATTTGATAGGCGAACTATTTGTTTTTAATATCAAATAATGGTT-3'; the sequence of the probe AP1 is 5'-CAAAATATATGATAGGCGAA-3'; the sequence of the probe AP2 is 5'-ATATATTTTGTTCGCCTATC-3';
本发明的优点在于:The advantages of the present invention are:
1、合成了一种新型的电化学杂交指示剂吖啶酮类衍生物-“5,7-二硝基-2-磺基-吖啶酮”(DSA),它具有较高的水溶性和电化学活性,且对单双链的选择性较强。1. Synthesized a new type of electrochemical hybridization indicator acridone derivative - "5,7-dinitro-2-sulfo-acridone" (DSA), which has high water solubility and Electrochemical activity, and strong selectivity for single and double strands.
2、以DSA为杂交指示剂,研制了一种基于“膜修饰电极”、“核酸外切酶III辅助靶序列循环”和“DNA长距式自组装”三重信号放大技术的电化学生物传感器,可将其用于肺癌相关靶序列c-erbB-2相关基因的超高灵敏、高特异性检测。2. Using DSA as a hybridization indicator, an electrochemical biosensor based on the triple signal amplification technology of "membrane modified electrode", "exonuclease III assisted target sequence recycling" and "DNA long-distance self-assembly" was developed. It can be used for ultra-high sensitivity and high specificity detection of lung cancer-related target sequence c-erbB-2 related genes.
3、该传感器的线性范围为2aM~50fM,检出限达到0.5aM,且能较好地识别完全互补和错配序列,可以实现临床实际肺癌血清样本中超低含量靶序列的检测。3. The linear range of the sensor is 2aM~50fM, the detection limit reaches 0.5aM, and it can better identify fully complementary and mismatched sequences, which can realize the detection of ultra-low content target sequences in actual clinical lung cancer serum samples.
附图说明Description of drawings
图1是电化学杂交指示剂5,7-二硝基-2-磺基-吖啶酮的质谱图。Figure 1 is the mass spectrum of the electrochemical hybridization indicator 5,7-dinitro-2-sulfo-acridone.
图2为本发明的不同修饰电极的[Fe(CN)6]3-/4-表征图。图中在不同修饰电极上的[Fe(CN)6]3-/4-表征:膜修饰电极(a)、核酸外切酶III辅助靶序列循环前(c)和后(b)、DNA长距式自组装(d)Fig. 2 is a [Fe(CN) 6 ] 3-/4- characterization diagram of different modified electrodes of the present invention. Characterization of [Fe(CN) 6 ] 3-/4- on different modified electrodes: membrane modified electrode (a), exonuclease III-assisted target sequence cycling before (c) and after (b), DNA long distance self-assembly (d)
图3为本发明的电化学信号检测图。不同浓度目标DNA的电化学信号A、B、C、D、E、F、G比较。Fig. 3 is an electrochemical signal detection diagram of the present invention. Comparison of electrochemical signals A, B, C, D, E, F, and G of different concentrations of target DNA.
具体实施方式detailed description
下列结合附图和实施例对本发明进行详细描述:The present invention is described in detail below in conjunction with accompanying drawing and embodiment:
实施例1Example 1
DSA的表征数据如下:The characterization data of DSA are as follows:
DSA的元素分析:C,42.83%;H,1.99%;N,11.52%.(计算值:C,42.75%;H,1.93%;N,11.50%);DSA的红外分析IR(KBr)ν:3410(υNH),1592(υC-C),1642(υC=C),1389(υC-NO2),1190(υSO2OH).Elemental analysis of DSA: C, 42.83%; H, 1.99%; N, 11.52%. (calculated value: C, 42.75%; H, 1.93%; N, 11.50%); DSA infrared analysis IR (KBr) ν: 3410(υNH), 1592(υC-C), 1642(υC=C), 1389(υC-NO2), 1190(υSO2OH).
DSA的质谱分析FAB-MS:m/z366([M+1]+).Mass spectrometry of DSA FAB-MS: m/z366([M+1]+).
DSA的氢谱分析1HNMR(CDCl3,δ):9.04(s,ArH),8.76(s,ArH),8.13(s,ArH),7.85(d,ArH),6.87(d,ArH),4.21(s,NH).DSA hydrogen spectrum analysis 1HNMR (CDCl3, δ): 9.04 (s, ArH), 8.76 (s, ArH), 8.13 (s, ArH), 7.85 (d, ArH), 6.87 (d, ArH), 4.21 (s , NH).
实施例2Example 2
本发明的电化学传感器包括玻碳电极GCE,表面涂覆有敏感膜,ExoIII酶,辅助序列AP1和AP2。敏感膜由聚赖氨酸PLLy和固定的发卡探针基因P(5'-NH2-AAAAATTTATTTGATAGGCGAACTATTTGTTTTTAATATCAAATAATGGTT-3')组成,将固定了探针DNA的玻碳电极浸入含有一定浓度的互补DNA(T1)的PBS(磷酸盐pH7.0)缓冲溶液中,进行杂交反应。将杂交后的电极置于10UExoIII酶的缓冲液中,37℃剪切消除,由于ExoIII可从3′端平端开始逐步降解探针基因P,直至与T1杂交形成双链的部分被完全降解,剩下未与T1杂交的部分基因残留于电极表面。同时,T1被完整释放出来并可继续与另一条P再次杂交。如此发生杂交、降解、再杂交的循环过程,一条T1就能使多条P被消化降解。在上述循环完成之后,探针基因P可从发卡结构转变成柔性的短线性结构。在电极表面滴加辅助探针基因AP1(5'-CAAAATATATGATAGGCGAA-3')和AP2(5'-ATATATTTTGTTCGCCTATC-3')溶液,室温下进行DNA长距式自组装。将长距式自组装后的电极置于含5,7-二硝基-2-磺基-吖啶酮的pH7.0PBS缓冲溶液中,使其嵌入到DNA的双螺旋结构中。上述电极清洗吹干后即可用于电化学检测。The electrochemical sensor of the present invention comprises a glassy carbon electrode GCE, the surface is coated with a sensitive film, ExoIII enzyme, and auxiliary sequences AP1 and AP2. The sensitive membrane is composed of poly-lysine PLLy and immobilized hairpin probe gene P (5'-NH2-AAAAATTTATTTGATAGGCGAACTATTTGTTTTTAATATCAAATAATGGTT-3'). The glassy carbon electrode immobilized with probe DNA is immersed in a glassy carbon electrode containing a certain concentration of complementary DNA (T1). The hybridization reaction was carried out in PBS (phosphate pH 7.0) buffer solution. Place the hybridized electrode in 10 U of ExoIII enzyme buffer, and eliminate it by shearing at 37°C. Since ExoIII can gradually degrade the probe gene P from the blunt end of the 3′ end until the part that hybridizes with T1 to form a double strand is completely degraded, the remaining The part of the gene not hybridized with T1 remains on the surface of the electrode. At the same time, T1 is released intact and can continue to re-hybrid with another P. In this way, a cycle of hybridization, degradation, and re-hybridization occurs, and one T1 can cause multiple Ps to be digested and degraded. After the above cycle is completed, the probe gene P can transform from a hairpin structure to a flexible short linear structure. Auxiliary probe gene AP1 (5'-CAAAATATATGATAGGCGAA-3') and AP2 (5'-ATATATTTTGTTCGCCTATC-3') solutions were added dropwise on the electrode surface, and DNA long-distance self-assembly was performed at room temperature. The long-distance self-assembled electrode was placed in a pH 7.0 PBS buffer solution containing 5,7-dinitro-2-sulfo-acridone to make it embedded in the double helix structure of DNA. The electrodes can be used for electrochemical detection after cleaning and drying.
上述传感器的制备方法The preparation method of above-mentioned sensor
1)电化学杂交指示剂5,7-二硝基-2-磺基-吖啶酮的制备:称取0.6g吖啶酮,加入5mL浓H2SO4,搅拌溶解后,加热至100℃反应30min,趁热将溶液倒入冰水中,固体析出,过滤干燥得到浅绿色固体2-磺基-吖啶酮;称取0.6g2-磺基-吖啶酮,加入3mL36%乙酸,再依次加入0.36mL的浓硝酸和0.8mL的冰醋酸,于56~60℃下搅拌反应2h。趁热将溶液倒入冰水中(0~4℃),固体析出。过滤,用10~20mL水冲洗,并用无水乙醇进一步重结晶纯化,得到黄色针状粉末5,7-二硝基-2-磺基-吖啶酮。1) Preparation of electrochemical hybridization indicator 5,7-dinitro-2-sulfo-acridone: Weigh 0.6g of acridone, add 5mL of concentrated H 2 SO 4 , stir to dissolve, and heat to 100°C After reacting for 30 minutes, pour the solution into ice water while it was hot, the solid precipitated out, filtered and dried to obtain light green solid 2-sulfo-acridone; weighed 0.6g of 2-sulfo-acridone, added 3mL of 36% acetic acid, and then added 0.36mL of concentrated nitric acid and 0.8mL of glacial acetic acid were stirred and reacted at 56~60°C for 2h. Pour the solution into ice water (0-4°C) while hot, and the solid precipitates out. Filter, rinse with 10-20 mL of water, and further recrystallize and purify with absolute ethanol to obtain 5,7-dinitro-2-sulfo-acridone as a yellow needle-like powder.
2)聚赖氨酸修饰玻碳电极的制备:将处理后的玻碳电极置于含0.01ML-赖氨酸的0.2MPBS(pH8.0)缓冲液中,用循环伏安法电合修饰聚赖氨酸膜,条件为:电压-1.0~+2.4V,扫描速率为100mVs-1,表征圈数为14圈,再用双蒸水彻底冲洗电极并在室温下干燥,得到聚赖氨酸修饰电极。2) Preparation of polylysine-modified glassy carbon electrode: place the treated glassy carbon electrode in 0.2MPBS (pH8.0) buffer solution containing 0.01ML-lysine, and use cyclic voltammetry to electrically modify poly Lysine film, the conditions are: voltage -1.0~+2.4V, scan rate 100mVs-1, characterization cycle is 14 cycles, then thoroughly rinse the electrode with double distilled water and dry at room temperature to obtain polylysine modified electrode.
3)发卡探针P、c-erbB-2相关基因、AP1和AP2的设计探针:发卡探针P:5'-NH2-AAAAATTTATTTGATAGGCGAACTATTTGTTTTTAATATCAAATAATGGTT-3'(由上海生工生物工程技术服务有限公司合成);c-erbB-2相关基因:5'-AACCATTATTTGATATTAAAACAAATAGGCTTG-3'为特定序列DNA(也由上海生工生物工程技术服务有限公司合成的c-erbB-2相关基因);AP1:5'-CAAAATATATGATAGGCGAA-3'(由上海生工生物工程技术服务有限公司合成);AP2:5'-ATATATTTTGTTCGCCTATC-3'(由上海生工生物工程技术服务有限公司合成);将探针P溶于TE缓冲液中(由10mMTris、1.0mMEDTA和0.10mMNaCl配制,并用10mmol/LHCl调至pH7.4)制成100μM的探针溶液;将目标DNA溶解于pH7.0PBS缓冲液中制成100μM的目标DNA溶液。3) Design probes for hairpin probe P, c-erbB-2 related genes, AP1 and AP2: hairpin probe P: 5'-NH2-AAAAATTTATTTGATAGGCGAACTATTTGTTTTTAATATCAAATAATGGTT-3' (synthesized by Shanghai Sangon Bioengineering Technology Service Co., Ltd.) ; c-erbB-2 related gene: 5'-AACCATTATTTGATATTAAAACAAATAGGCTTG-3' is a specific sequence DNA (also c-erbB-2 related gene synthesized by Shanghai Sangon Bioengineering Technology Service Co., Ltd.); AP1: 5'-CAAAATATATGATAGGCGAA- 3' (synthesized by Shanghai Sangon Bioengineering Technology Service Co., Ltd.); AP2: 5'-ATATATTTTGTTCGCCTATC-3' (synthesized by Shanghai Sangon Bioengineering Technology Service Co., Ltd.); Probe P was dissolved in TE buffer ( Prepared from 10mM Tris, 1.0mM EDTA and 0.10mM NaCl, and adjusted to pH7.4 with 10mmol/L HCl) to make a 100μM probe solution; dissolve the target DNA in pH7.0PBS buffer to make a 100μM target DNA solution.
4)发卡探针基因在修饰电极上的固定:聚赖氨酸修饰玻碳电极在乙醇、二次水中充分洗涤除去多余的赖氨酸。再在电极表面滴加20μL偶联活化剂(含5mM的EDC和8mM的NHS的pH7.4的磷酸缓冲液),室温自然蒸干,然后用超纯水清洗10s,除掉未结合在修饰电极表面的偶联活化剂,氮气吹干。然后在电极表面滴加10μL1μM发卡结构的探针基因P溶液,将末端修饰氨基的探针基因P共价固定于聚赖氨酸的羧基上,室温自然蒸干,用超纯水清洗除掉未结合在电极表面的P,再用pH7.0PBS缓冲液清洗,室温干燥,制得发卡探针修饰电极。4) Immobilization of the hairpin probe gene on the modified electrode: the polylysine modified glassy carbon electrode is fully washed in ethanol and secondary water to remove excess lysine. Add 20 μL of coupling activator (phosphate buffer solution at pH 7.4 containing 5 mM EDC and 8 mM NHS) dropwise on the surface of the electrode, evaporate to dryness naturally at room temperature, and then wash with ultrapure water for 10 seconds to remove unbound on the modified electrode. The coupling activator on the surface was blown dry with nitrogen. Then, 10 μL of 1 μM probe gene P solution with hairpin structure was added dropwise on the electrode surface, and the probe gene P with terminal modified amino group was covalently immobilized on the carboxyl group of polylysine. The P bound on the surface of the electrode was washed with pH 7.0 PBS buffer solution and dried at room temperature to obtain a hairpin probe modified electrode.
5)酶辅助靶序列循环:将发卡探针修饰电极置于一系列浓度的靶序列c-erbB-2相关基因溶液中,室温下杂交1h后清洗吹干。将杂交后的电极置于10U核酸外切酶III的缓冲液中,37℃下反应30min后,清洗吹干待用。5) Enzyme-assisted target sequence cycling: place the hairpin probe modified electrode in a series of concentrations of the target sequence c-erbB-2 related gene solution, hybridize at room temperature for 1 hour, wash and dry. The hybridized electrode was placed in 10U exonuclease III buffer, reacted at 37°C for 30min, washed and dried for use.
6)DNA长距式自组装:分别取10μL1μM的辅助探针AP1和AP2溶液滴涂在上述电极表面,室温下进行DNA长距式自组装,2h后清洗吹干。分别在含有5mMK3[Fe(CN)6]/K4[Fe(CN)6](1:1)的100mMpH7.0PBS+0.1MKCl缓冲溶液测量不同修饰电极的循环伏安曲线,扫描速率为0.05V/s,采样间隔为0.001V,静置时间为2s。从实验结果可知(见附图2),电极表面的DNA含量越多,峰电流值(Ip)越小;电极表面的DNA含量越少,峰电流值(Ip)越大。这是由于DNA磷酸骨架带负电荷,阻碍带同种电荷的[Fe(CN)6]3-/4-到电极表面发生氧化还原反应,导致其电子传递受阻,峰电流减小。6) DNA long-distance self-assembly: Take 10 μL of 1 μM auxiliary probe AP1 and AP2 solutions and drop-coat them on the surface of the above electrode, perform DNA long-distance self-assembly at room temperature, wash and dry after 2 hours. The cyclic voltammetry curves of different modified electrodes were measured in 100mMpH7.0PBS+0.1MKCl buffer solution containing 5mMK3[Fe(CN)6]/K4[Fe(CN)6](1:1), and the scan rate was 0.05V/ s, the sampling interval is 0.001V, and the rest time is 2s. From the experimental results (see Figure 2), the more DNA content on the electrode surface, the smaller the peak current value (Ip); the less the DNA content on the electrode surface, the larger the peak current value (Ip). This is because the DNA phosphate backbone is negatively charged, which prevents [Fe(CN) 6 ] 3-/4- with the same charge from going to the electrode surface for redox reaction, resulting in blocked electron transfer and reduced peak current.
通过以上方法即可得到所需的传感器。The required sensor can be obtained through the above method.
实施例3Example 3
上述电化学传感器用于检测c-erbB-2相关基因,具体检测方法为:将固定了发卡探针DNA的玻碳电极浸入含有一定浓度的互补DNA溶液,进行杂交反应。将杂交后的电极置于10U核酸外切酶III的缓冲液中,37℃剪切消除,探针P从发卡结构转变成柔性的短线性结构。在电极表面滴加辅助探针AP1和AP2溶液,室温下进行DNA长距式自组装。将长距式自组装后的电极置于含5,7-二硝基-2-磺基-吖啶酮的pH7.0PBS缓冲溶液中,让其嵌入到DNA的双螺旋结构中。上述电极清洗吹干后即可置于PB缓冲溶液中用方波伏安法检测。The above-mentioned electrochemical sensor is used to detect c-erbB-2 related genes, and the specific detection method is as follows: the glassy carbon electrode immobilized with the hairpin probe DNA is immersed in a solution containing a certain concentration of complementary DNA to carry out hybridization reaction. The hybridized electrode was placed in 10 U of exonuclease III buffer, and the shearing was eliminated at 37°C, and the probe P was transformed from a hairpin structure into a flexible short linear structure. Auxiliary probes AP1 and AP2 solutions were added dropwise on the electrode surface, and DNA long-distance self-assembly was carried out at room temperature. The long-distance self-assembled electrode was placed in a pH 7.0 PBS buffer solution containing 5,7-dinitro-2-sulfo-acridone to allow it to be embedded in the double helix structure of DNA. After the above-mentioned electrodes are washed and dried, they can be placed in PB buffer solution and detected by square wave voltammetry.
本发明运用现有技术的方波伏安法电化学检测技术观察指示剂的氧化还原信号变化。实验结果见附图3,由图可知,一定范围内,随着目标DNA浓度增加,杂交形成的双链脱氧核糖核酸(dsDNA)量增加,酶切产生的柔性短序列越多,从而形成DNA长距式自组装的量越多,使得指示剂嵌入量增加,峰电流信号加大。指示剂5,7-二硝基-2-磺基-吖啶酮的峰电位为-0.028V。测定的条件:测定介质为PB缓冲溶液,pH=5.0。方波伏安法测定参数:电位增量为0.005V,幅度为0.025V。其线性范围为:2aM~50fM。回归方程为I(μA)=0.5955Log[C/(aM)]+0.5814,线性相关系数r为0.9947,该方法对特定序列DNA的最低检测下限为0.5aM。The invention uses the square wave voltammetry electrochemical detection technology in the prior art to observe the redox signal change of the indicator. The experimental results are shown in Figure 3. It can be seen from the figure that within a certain range, as the target DNA concentration increases, the amount of double-stranded deoxyribonucleic acid (dsDNA) formed by hybridization increases, and the more flexible short sequences produced by enzyme digestion, thus forming long DNA. The more the amount of distance self-assembly, the more the amount of indicator embedded, and the peak current signal will increase. The peak potential of indicator 5,7-dinitro-2-sulfo-acridone is -0.028V. Determination conditions: the determination medium is PB buffer solution, pH=5.0. Measurement parameters of square wave voltammetry: the potential increment is 0.005V, and the amplitude is 0.025V. Its linear range is: 2aM~50fM. The regression equation is I(μA)=0.5955Log[C/(aM)]+0.5814, and the linear correlation coefficient r is 0.9947. The lowest detection limit of this method for specific sequence DNA is 0.5aM.
以上所述仅为本发明的较佳实施例,凡依本发明申请专利范围所做的均等变化与修饰,皆应属本发明的涵盖范围。The above descriptions are only preferred embodiments of the present invention, and all equivalent changes and modifications made according to the scope of the patent application of the present invention shall fall within the scope of the present invention.
SEQUENCELISTINGSEQUENCELISTING
<110>福建医科大学<110> Fujian Medical University
<120>一种杂交指示剂5,7-二硝基-2-磺基-吖啶酮的制备方法和用途<120> Preparation method and application of a hybridization indicator 5,7-dinitro-2-sulfo-acridone
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<170>PatentInversion3.3<170>PatentInversion3.3
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<212>DNA<212>DNA
<213>探针P<213> Probe P
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<210>2<210>2
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<212>DNA<212>DNA
<213>探针AP1<213> probe AP1
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<210>3<210>3
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<212>DNA<212>DNA
<213>探针AP2<213> Probe AP2
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<213>c-erbB-2相关基因<213> c-erbB-2 related gene
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