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CN104099334B - MicroRNAs gene and improve chlorella content of fatty acid application - Google Patents

MicroRNAs gene and improve chlorella content of fatty acid application Download PDF

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CN104099334B
CN104099334B CN201410320221.7A CN201410320221A CN104099334B CN 104099334 B CN104099334 B CN 104099334B CN 201410320221 A CN201410320221 A CN 201410320221A CN 104099334 B CN104099334 B CN 104099334B
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胡章立
王潮岗
陈曦
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Shenzhen Ocean Technology Co Ltd
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Shenzhen University
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Abstract

本发明公开了一种microRNAs基因及其在提高绿藻脂肪酸含量的应用。本发明以microRNAs及其靶基因作为工具,调控绿藻代谢关键酶(PEPC酶)的活性,控制藻细胞内碳源的积累,从而使绿藻细胞积累更多的脂肪酸。The invention discloses a microRNAs gene and its application in increasing the fatty acid content of green algae. The invention uses microRNAs and their target genes as tools to regulate the activity of key enzymes in green algae metabolism (PEPC enzymes) and control the accumulation of carbon sources in algae cells, so that the green algae cells can accumulate more fatty acids.

Description

microRNAs基因及其在提高绿藻脂肪酸含量的应用microRNAs gene and its application in improving fatty acid content of green algae

技术领域:Technical field:

本发明属于生物技术领域,涉及一种microRNAs基因及其在提高绿藻脂肪酸含量的应用,通过利用调控microRNAs对其靶基因的调控的原理,通过光照、温度等诱导绿藻细胞microRNAs的表达水平,最终提高绿藻细胞脂肪酸含量的技术。The invention belongs to the field of biotechnology, and relates to a microRNAs gene and its application in increasing the fatty acid content of green algae. By using the principle of regulating microRNAs to regulate its target genes, the expression level of microRNAs in green algae cells is induced by light, temperature, etc., The ultimate technology to increase the fatty acid content of Chlorella cells.

背景技术:Background technique:

目前世界能源主要依赖于石油、煤炭和天然气等不可再生资源,它们的日益枯竭已成为影响全球经济发展的主要因素。同时,这些石化能源的使用这些能源迟早会枯竭,开发新能源已经成为经济发展的必然趋势,生物柴油(脂肪酸甲酯)以其易于生物降解、可再生以及类似于石化柴油的动力和燃烧特性得到了肯定。微藻作为一种新型的生物柴油生产原料,因其具有生物量大、生长快、油脂含量高等特点而成为目前生物能源研究的热点,具有很好的开发潜力。基于microRNAs调控技术,通过对脂肪酸代谢的关键酶基因或转录因子进行调控来增加微藻细胞内油脂的积累,是目前最具潜力的代谢调控途径。At present, the world's energy mainly depends on non-renewable resources such as oil, coal and natural gas, and their depletion has become the main factor affecting the development of the global economy. At the same time, the use of these petrochemical energy sources will be exhausted sooner or later, and the development of new energy sources has become an inevitable trend of economic development. Biodiesel (fatty acid methyl ester) has been obtained for its easy biodegradability, renewable and similar power and combustion characteristics to petrochemical diesel. sure. Microalgae, as a new type of raw material for biodiesel production, has become a hot spot in bioenergy research due to its characteristics of large biomass, fast growth, and high oil content, and has good development potential. Based on microRNAs regulation technology, increasing the accumulation of lipids in microalgal cells by regulating the key enzyme genes or transcription factors of fatty acid metabolism is currently the most potential metabolic regulation approach.

磷酸烯醇式丙酮酸羧化酶(PEPC)存在于所有能够进行光合作用的有机体和大多数非光合作用的细菌和原生动物中。在微藻中,通过光合作用固定的CO2形成的3-磷酸甘油醛既可以进入葡萄糖和氨基酸的合成途径,也能通过糖酵解形成丙酮酸再经由乙酰辅酶A进入脂类代谢或参与不完整的三羧酸循环。PEPC可以催化CO2与磷酸烯醇式丙酮酸(PEP)的羧化反应,最后生成草酰乙酸(OAA)和无机磷酸,而PEP可转化成乙酰CoA,后者是脂肪酸合成的主要原料。PEPC在碳代谢途径中将碳源导向三羧酸循环,使得碳源流向非脂类积累的方向而不易于油脂的积累。研究表明,PEPC的活性对脂类的合成具有重要影响。80年代末,日本学者杉木博士发现大豆籽粒中蛋白质含量和PEPC的酶活性密切相关。据报道,C3植物中PEPC可能在促进TCA循环中间代谢物的回补、协调碳和氮的代谢等方面有重要作用,即:当对氨基酸合成所用碳骨架的需要量增大时,增加三羧酸循环中草酰乙酸的再生,协调C和N的代谢,提供氨基酸合成所需要的碳骨架【GonzalezM.C,Sanehez R,Cejudo F.J.Abioticstresses affeeting water balance induce Phosphoenolpyruvate carboxylaseexpression in roots of wheat seedlings J.Planta.,2003,216(6):985-992.】。陈锦清提出“底物竞争”假说,认为籽粒油脂和蛋白质的合成需要同一底物—丙酮酸,两者存在底物竞争,而平衡点取决于两类物质代谢的关键酶,PEPC和乙酰辅酶A羧化酶(ACCase)的相对活性。PEPC催化丙酮酸合成草酰乙酸进入蛋白质代谢;ACCase催化丙酮酸合成乙酰辅酶A进入脂肪酸代谢。据此,陈锦清等提出利用反义PEPC技术抑制油菜中蛋白质合成关键酶PEPC的基因表达以增加脂肪酸生物合成底物PEP的供应,转基因油菜含油量较对照提高了6.4%一16.7%,单株含油量最高达到49.54%【陈锦清,郎春秀,胡张华等.反义pepc基因调控油菜籽粒蛋白质/油脂含量比率的研究J.农业生物技术学报.,1999,7(4):316-32】。侯李君等用蓝藻正反义pepcA基因转化大肠杆菌,与野生型细胞相比较,转反义pepcA段的大肠杆菌中PEPC酶活性降低到野生菌的30.2%,蛋白合成减少23.6%,脂类的合成增加了46.9%:而转正义pepcA片段大肠杆菌的PEPC酶活性是野生菌的2.38倍,蛋白合成增加了14.5%,脂类合成减少了49.6%,转基因菌中十八碳酸的含量明显增加【侯李君,施定基,蔡泽富等.蓝藻正反义pepcA基因导入对大肠杆菌中脂类合成的调控J.中国生物工程杂志,2008,(5):52-58】。Phosphoenolpyruvate carboxylase (PEPC) is present in all photosynthetic organisms and most non-photosynthetic bacteria and protozoa. In microalgae, 3-phosphoglyceraldehyde formed by photosynthetic fixation of CO 2 can not only enter the synthesis pathway of glucose and amino acids, but also form pyruvate through glycolysis and then enter lipid metabolism through acetyl-CoA or participate in various Complete Krebs cycle. PEPC can catalyze the carboxylation reaction of CO2 with phosphoenolpyruvate (PEP) to finally generate oxaloacetate (OAA) and inorganic phosphoric acid, while PEP can be converted into acetyl CoA, which is the main raw material for fatty acid synthesis. PEPC directs the carbon source to the tricarboxylic acid cycle in the carbon metabolism pathway, so that the carbon source flows to the direction of non-lipid accumulation and is not easy to accumulate oil. Studies have shown that the activity of PEPC has an important influence on the synthesis of lipids. In the late 1980s, Japanese scholar Dr. Sugi found that the protein content in soybean grains was closely related to the enzyme activity of PEPC. According to reports, PEPC in C3 plants may play an important role in promoting the replenishment of intermediate metabolites in the TCA cycle and coordinating the metabolism of carbon and nitrogen, that is, when the demand for the carbon skeleton used in amino acid synthesis increases, the tricarboxylic The regeneration of oxaloacetate in the acid cycle coordinates the metabolism of C and N, and provides the carbon skeleton required for amino acid synthesis [GonzalezM.C, Sanehez R, Cejudo FJAbioticstresses affeeting water balance induce Phosphoenolpyruvate carboxylase expression in roots of wheat seedlings J.Planta., 2003, 216(6):985-992.]. Chen Jinqing put forward the "substrate competition" hypothesis, thinking that the synthesis of grain oil and protein requires the same substrate - pyruvate, there is substrate competition between the two, and the equilibrium point depends on the key enzymes of the metabolism of two types of substances, PEPC and acetyl-CoA carboxylate Relative activity of ACCase. PEPC catalyzes the synthesis of oxaloacetate from pyruvate to enter protein metabolism; ACCase catalyzes the synthesis of acetyl-CoA from pyruvate to enter fatty acid metabolism. Accordingly, Chen Jinqing et al. proposed to use antisense PEPC technology to inhibit the gene expression of the key protein synthesis enzyme PEPC in rapeseed to increase the supply of fatty acid biosynthesis substrate PEP. The highest content reached 49.54% [Chen Jinqing, Lang Chunxiu, Hu Zhanghua, etc. Antisense pepc gene regulates the ratio of protein/fat content in rapeseed J. Journal of Agricultural Biotechnology, 1999, 7(4): 316-32]. Hou Lijun et al. transformed Escherichia coli with the antisense pepcA gene of cyanobacteria. Compared with wild-type cells, the PEPC enzyme activity in E. coli transfected with antisense pepcA segment was reduced to 30.2% of wild bacteria, protein synthesis was reduced by 23.6%, and lipid synthesis was reduced. Increased by 46.9%: while the PEPC enzyme activity of Escherichia coli with the positive pepcA fragment was 2.38 times that of wild bacteria, protein synthesis increased by 14.5%, lipid synthesis decreased by 49.6%, and the content of octadecanoic acid in the transgenic bacteria increased significantly [Hou Lijun , Shi Dingji, Cai Zefu, etc. Regulation of lipid synthesis in Escherichia coli by cyanobacteria sense and antisense pepcA gene introduction J. China Biotechnology Journal, 2008, (5): 52-58].

莱茵衣藻中含有两种形式的PEPC的编码基因CrPpc1和CrPpc2,并推测出PEPC1为同源四聚体,PEPC2为复合体【Eric R.Moellering,Yexin Ouyang.The two divergentPEP-carboxylase catalytic subunits in the greenmicroalga Chlamydomonasreinhardtii respond reversibly to inorganic-N supply and co-exist in thehigh-molecular-mass,hetero-oligomeric Class-2 PEPC complex.E.R.Moellering etal./FEBS Letters.,581(2007):4871–4876.】。能否通过调控PEPC酶的活性让绿藻积累更多的脂肪酸?本专利技术正是针对莱茵衣藻中两种亚型的PEPC酶(PEPC1和PEPC2),设计合适的microRNAs,参与调控PEPC酶的活性。发明了一种基于microRNAs调控绿藻积累脂肪酸的技术。Chlamydomonas reinhardtii contains two forms of PEPC coding genes CrPpc1 and CrPpc2, and it is speculated that PEPC1 is a homotetramer and PEPC2 is a complex [Eric R.Moellering, Yexin Ouyang. The two divergentPEP-carboxylase catalytic subunits in the green microalga Chlamydomonas reinhardtii respond reversibly to inorganic-N supply and co-exist in the high-molecular-mass, hetero-oligomeric Class-2 PEPC complex. E.R. Moellering et al./FEBS Letters., 581(2007):4871–4876.]. Can green algae accumulate more fatty acids by regulating the activity of PEPC enzyme? This patent technology is aimed at the two subtypes of PEPC enzymes (PEPC1 and PEPC2) in Chlamydomonas reinhardtii, and designs suitable microRNAs to participate in the regulation of the activity of PEPC enzymes. Invented a technology based on microRNAs to regulate the accumulation of fatty acids in green algae.

发明内容:Invention content:

本发明提供一种基于microRNAs调控绿藻脂肪酸合成代谢的技术。构建能够通过光强或温度等手段调控microRNAs表达的转基因藻,以microRNAs对其靶基因的抑制作为手段,调控绿藻脂肪酸的合成。通过microRNAs抑制莱茵衣藻中PEPC酶的活性,从而使绿藻细胞能够积累更多的脂肪酸。本发明的具体内容如下:The invention provides a technique for regulating the synthesis and metabolism of fatty acids in green algae based on microRNAs. Construct transgenic algae that can regulate the expression of microRNAs by means of light intensity or temperature, and use microRNAs to inhibit their target genes as a means to regulate the synthesis of fatty acids in green algae. Inhibition of PEPC enzyme activity in Chlamydomonas reinhardtii by microRNAs enables green algae cells to accumulate more fatty acids. Concrete content of the present invention is as follows:

本发明一方面涉及一种莱茵衣藻microRNAs基因,其特征在于其序列为SEQ IDNO.1或者SEQ ID NO.2。One aspect of the present invention relates to a Chlamydomonas reinhardtii microRNAs gene, characterized in that its sequence is SEQ ID NO.1 or SEQ ID NO.2.

本发明还涉及上述的microRNAs在提高绿藻脂肪酸含量中的应用。The present invention also relates to the application of the above-mentioned microRNAs in increasing the fatty acid content of green algae.

本发明另一方面还涉及基于上述莱茵衣藻microRNAs基因调控的绿藻脂肪酸合成的方法,构建能够通过光强或温度等手段调控microRNAs表达的转基因藻,以microRNAs及其靶基因作为工具,调控绿藻蛋白质的合成代谢,增加藻细胞内脂肪酸的合成,从而提高绿藻细胞内的脂肪酸含量。Another aspect of the present invention also relates to a method for the synthesis of fatty acids in green algae based on the regulation of microRNAs genes of Chlamydomonas reinhardtii, to construct transgenic algae that can regulate the expression of microRNAs by means of light intensity or temperature, etc., and to use microRNAs and their target genes as tools to regulate green algae. The synthesis and metabolism of algae protein increases the synthesis of fatty acids in algae cells, thereby increasing the fatty acid content in green algae cells.

在本发明的一个优选实施方式中,通过microRNAs抑制绿藻蛋白质合成途径中的靶基因—磷酸烯醇式丙酮酸羧化酶(PEPC)基因来提高脂肪酸的含量。In a preferred embodiment of the present invention, microRNAs inhibit the target gene in the protein synthesis pathway of green algae—phosphoenolpyruvate carboxylase (PEPC) gene to increase the fatty acid content.

在本发明的一个优选实施方式中,其特征在于构建能够通过光强或温度等手段调控microRNAs表达的转基因藻,具体方法如下:In a preferred embodiment of the present invention, it is characterized in that constructing transgenic algae capable of regulating the expression of microRNAs by means such as light intensity or temperature, the specific method is as follows:

转基因受体藻的筛选与培养:采用TAP、BBM等绿藻培养基,在光照90~200μE/m2·s的条件下通气培养真核绿藻(如莱茵衣藻等);Screening and cultivation of transgenic recipient algae: using green algae medium such as TAP and BBM, aerated eukaryotic green algae (such as Chlamydomonas reinhardtii, etc.) under the condition of light of 90-200 μE/m 2 ·s;

根据权利要求3的方法确定的序列,人工合成调控靶基因的microRNAs;According to the sequence determined by the method of claim 3, artificially synthesize microRNAs that regulate target genes;

构建绿藻表达载体:将microRNAs插入带有特异性启动子(强光诱导或热激诱导等)的绿藻表达载体;Construction of green algae expression vectors: Insert microRNAs into green algae expression vectors with specific promoters (strong light induction or heat shock induction, etc.);

表达载体的遗传转化与转基因藻的筛选:将带有microRNAs基因的表达载体导入绿藻基因组中进行表达,通过“珠磨法”、基因枪法或电击转化法进行遗传转化。通过抗性平板筛选或营养缺陷型筛选,获得阳性藻落,进行分子检测和表达产物分析,确定得到带有microRNA的转基因藻,且该转基因藻能够被强光或高温所诱导。Genetic transformation of expression vectors and screening of transgenic algae: the expression vectors with microRNAs genes are introduced into the genome of green algae for expression, and the genetic transformation is carried out by "bead milling method", gene gun method or electric shock transformation method. Through resistance plate screening or auxotrophic screening, positive algae colonies were obtained, and molecular detection and expression product analysis were carried out to determine the transgenic algae with microRNA, and the transgenic algae could be induced by strong light or high temperature.

附图说明:Description of drawings:

图1:amicroRNAs-cre-MIRpepc1调控的转化子与对照组脂肪酸含量的比较(转化子B、C表示转入了调控PEPC1基因表达的microRNAs的转化子);Figure 1: Comparison of fatty acid content between transformants regulated by amicroRNAs-cre-MIRpepc1 and the control group (transformants B and C represent transformants that have been transferred to microRNAs that regulate PEPC1 gene expression);

图2:amicroRNAs-cre-MIRpepc2调控的转化子与对照组脂肪酸含量的比较(转化子H、V、Z表示转入了调控PEPC2基因表达的microRNAs的转化子)。Figure 2: Comparison of the fatty acid content of transformants regulated by amicroRNAs-cre-MIRpepc2 and the control group (transformants H, V, and Z represent transformants transferred with microRNAs that regulate PEPC2 gene expression).

具体实施例:Specific examples:

以莱茵衣藻作为绿藻的代表物种。Chlamydomonas reinhardtii is the representative species of green algae.

实施例1Example 1

(1)转基因受体藻株的选择与培养(1) Selection and cultivation of transgenic recipient algal strains

选择细胞壁缺陷型莱茵衣藻(Chlamydomonas reinhardtii,cc-849,购自美国Duck大学衣藻遗传中心)和细胞色素b缺陷型莱茵衣藻(cc-2654,购自美国Duck大学衣藻遗传中心)作为转基因的受体藻株。使用TAP培养基作为莱茵衣藻的培养基,其配方及成分如下所示:2.42g Tris,25mL4×Beijerinck salts(16g NH4Cl,2g CaCl2.2H2O,4g MgSO4.7H2O溶于水中,定容至1L),1mL1M(K)PO4,1mL Trace微量元素混合液(11.4g H3BO3,5.6gMnCl2.4H2O,22g ZnSO4.7H2O,4.99g FeSO4.7H2O,1.61g CoCl2.6H2O,1.57g CuSO4.5H2O,1.1g(NH4)6Mo7O24.4H2O,50gNa2EDTA,溶于水中,20%KOH调pH6.5-6.8,定容至1L),溶解到975mL水中,使用冰醋酸调pH6.95-7.05,定容至1L。Cell wall-defective Chlamydomonas reinhardtii (Chlamydomonas reinhardtii, cc-849, purchased from the Chlamydomonas Genetic Center of Duck University, USA) and cytochrome b-deficient Chlamydomonas reinhardtii (cc-2654, purchased from the Chlamydomonas Genetic Center of Duck University, USA) were selected as Transgenic recipient strains. TAP medium was used as the medium for Chlamydomonas reinhardtii, and its formulation and ingredients were as follows: 2.42g Tris, 25mL 4×Beijerinck salts (16g NH 4 Cl, 2g CaCl 2 .2H 2 O, 4g MgSO 4 .7H 2 O dissolved Dilute to 1L in water, 1mL1M(K)PO 4 , 1mL Trace trace element mixture (11.4g H 3 BO 3 , 5.6gMnCl 2 .4H 2 O, 22g ZnSO 4 .7H 2 O, 4.99 g FeSO 4 .7H 2 O, 1.61g CoCl 2 .6H 2 O, 1.57g CuSO 4 .5H 2 O, 1.1g (NH 4 ) 6 Mo 7 O 24 .4H 2 O, 50g Na 2 EDTA, dissolved in water, 20% KOH Adjust the pH to 6.5-6.8, dilute to 1L), dissolve in 975mL of water, adjust the pH to 6.95-7.05 with glacial acetic acid, and dilute to 1L.

莱茵衣藻的培养条件:在22~25℃,90μE/m2·s光照条件下连续培养,藻细胞对数生长期浓度为1~2×106cells/mL。Cultivation conditions of Chlamydomonas reinhardtii: continuous culture at 22-25°C, 90 μE/m 2 ·s light conditions, algal cell concentration in the logarithmic growth phase is 1-2×10 6 cells/mL.

(2)莱茵衣藻人工microRNAs的合成(2) Synthesis of artificial microRNAs from Chlamydomonas reinhardtii

通过基因公司合成可抑制PEPC酶基因表达的microRNAs序列,分别为amicroRNAs-cre-MIRpepc1和amicroRNAs-cre-MIRpepc2,其序列信息如下:The microRNAs sequences that can inhibit the expression of the PEPC enzyme gene were synthesized by the gene company, respectively amicroRNAs-cre-MIRpepc1 and amicroRNAs-cre-MIRpepc2, and their sequence information is as follows:

>amicroRNAs-cre-MIRpepc1(SEQ ID NO.1)>amicroRNAs-cre-MIRpepc1 (SEQ ID NO.1)

GCTAGCGCGGGGCCCUGACACCACUGCGGCCGCuagcgaccaaacaauccaauaCCGCGCCUGGACCCGAGGGAGGACCCCUCGGGACCCGGUACGUCGUAUUGGAUUGUUUGGUCGCUAGGUCGCGGUGGGGUCAGGUCCUUCCGCCACGTG GCTAGC GCGGGGCCCUGACACCACUGCGGCCGCuagcgaccaaacaauccaauaCCGCGCCUGGACCCGAGGGAGGACCCCUCGGGACCCGGUACGUCGUAUUGGAUUGUUUGGUCGCUAGGUCGCGGUGGGGUCAGGUCCUUCCGC CACGTG

>amicroRNAs-cre-MIRpepc2(SEQ ID NO.2)>amicroRNAs-cre-MIRpepc2 (SEQ ID NO.2)

GCTAGCGCGGGGCCCUGACACCACUGCGGCCGCgugccgaaaauguuugguuaaCCGCGCCUGGACCCGAGGGAGGACCCCUCGGGACCCGGUACGUCGUUAACCAAACAUUUUCGGCACGGUCGCGGUGGGGUCAGGUCCUUCCGCCACGTG GCTAGC GCGGGGCCCUGACACCCACUGCGGCCGCgugccgaaaauguuugguaaCCGCGCCUGGACCCCGAGGGAGGACCCCUCGGGACCCGGUACGUCGUUAACCAAACAUUUUCGGCACGGUCGCGGUGGGGUCAGGUCCUUCCGC CACGTG

(3)amicroRNAs-cre-MIRpepc1,2基因衣藻核基因组表达载体的构建(3) Construction of amicroRNAs-cre-MIRpepc1, 2 gene Chlamydomonas nuclear genome expression vector

通过Nhe Ⅰ和Pmac Ⅰ双酶切获得调控amicroRNAs-cre-MIRpepc1和amicroRNAs-cre-MIRpepc2基因。载体pH105【Wu JX et al.Efficient expression of greenfluorescent protein(GFP)mediated by a chimeric promoter in Chlamydomonasreinhardtii.Chinese Journal of Oceanology and Limnology,2008(26):242-247】克隆有HSP70A-RBCS2启动子序列和RBCS2终止子序列,中间携带有Pmac Ⅰ、Nhe Ⅰ、Xba Ⅰ和Sal Ⅰ等多克隆酶切位点,可以插入外源基因并在衣藻核基因组中表达。载体pSP124((购自美国Duck大学衣藻中心))【Lambreras v,Stevens DR,Purton S.Efficient foreign geneexpression in Chlamydomonas reinhardtii mediated by an endogenousintron.Plant J.1998;14(4):441-447】含有表达盒RBCS2∷ble∷RBCS2,可使转化的宿主细胞获得腐草霉素和Zeomycin抗性,在本发明中作为衣藻转化的筛选标记。The regulated amicroRNAs-cre-MIRpepc1 and amicroRNAs-cre-MIRpepc2 genes were obtained by Nhe Ⅰ and Pmac Ⅰ double enzyme digestion. Vector pH105 [Wu JX et al. Efficient expression of green fluorescent protein (GFP) mediated by a chimeric promoter in Chlamydomonas reinhardtii. Chinese Journal of Oceanology and Limnology, 2008(26): 242-247] was cloned with HSP70A-RBCS2 promoter sequence and RBCS2 The terminator sequence carries multiple cloning restriction sites such as Pmac Ⅰ, Nhe Ⅰ, Xba Ⅰ and Sal Ⅰ in the middle, which can be inserted into foreign genes and expressed in the Chlamydomonas nuclear genome. The vector pSP124 ((purchased from the Chlamydomonas Center of Duck University, USA))【Lambreras v, Stevens DR, Purton S. Efficient foreign gene expression in Chlamydomonas reinhardtii mediated by an endogenous intron. Plant J.1998; 14(4):441-447】contains The expression cassette RBCS2::ble::RBCS2 can make transformed host cells acquire phleomycin and Zeomycin resistance, and is used as a selection marker for Chlamydomonas transformation in the present invention.

将amicroRNAs-cre-MIRpepc1和amicroRNAs-cre-MIRpepc2基因分别插入经PmacⅠ和Nhe Ⅰ消化的pH105载体,获得pH105-amicroRNA。经EcoR Ⅰ酶切pH105-amicroRNA,获得表达amicroRNA基因的表达框架(HSP70A-RBCS2∷amicroRNAs-cre-MIRpepc1∷RBCS2和HSP70A-RBCS2∷amicroRNAs-cre-MIRpepc2∷RBCS2)插入pSP124的EcoR Ⅰ位点,获得可调控pepc1和pepc2基因的衣藻表达载体pH105-amicroRNAs-cre-MIRpepc1和pH105-amicroRNAs-cre-MIRpepc2。The amicroRNAs-cre-MIRpepc1 and amicroRNAs-cre-MIRpepc2 genes were inserted into the pH105 vector digested with PmacI and NheI, respectively, to obtain pH105-amicroRNA. pH105-amicroRNA was digested by EcoR Ⅰ to obtain the expression frameworks expressing amicroRNA genes (HSP70A-RBCS2::amicroRNAs-cre-MIRpepc1::RBCS2 and HSP70A-RBCS2::amicroRNAs-cre-MIRpepc2::RBCS2) were inserted into the EcoR Ⅰ site of pSP124 to obtain Chlamydomonas expression vectors pH105-amicroRNAs-cre-MIRpepc1 and pH105-amicroRNAs-cre-MIRpepc2 that can regulate pepc1 and pepc2 genes.

(4)amicroRNAs-cre-MIRpepc1,2基因衣藻叶绿体表达载体的构建(4) Construction of amicroRNAs-cre-MIRpepc1, 2 gene Chlamydomonas chloroplast expression vector

质粒p423(购自美国Duck大学衣藻中心)上携带有aadA基因表达盒(5’atpA∷aadA∷3’rbcL),aadA基因作为衣藻遗传转化的筛选标记,赋予宿主细胞壮观霉素抗性。以莱茵衣藻cc-124(购自美国Duck大学衣藻遗传中心)基因组DNA为模板,设计引物Prch1和Prch2扩增5’chlB基因(490bp),作为衣藻遗传转化的右端同源序列。设计引物Prch3和Prch4扩增3’chlB基因(630bp),作为衣藻遗传转化的左端同源序列。Plasmid p423 (purchased from the Chlamydomonas Center of Duck University, USA) carries the aadA gene expression cassette (5'atpA::aadA::3'rbcL), and the aadA gene is used as a selection marker for genetic transformation of Chlamydomonas, endowing host cells with spectinomycin resistance . Using the genomic DNA of Chlamydomonas reinhardtii cc-124 (purchased from the Chlamydomonas Genetic Center of Duck University, USA) as a template, primers Prch1 and Prch2 were designed to amplify the 5'chlB gene (490bp) as the right-end homologous sequence of Chlamydomonas genetic transformation. Primers Prch3 and Prch4 were designed to amplify the 3'chlB gene (630bp) as the left homologous sequence of Chlamydomonas genetic transformation.

扩增5’chlB基因的引物为:The primers for amplifying the 5'chlB gene are:

Prch1:5’-CCTGAATTCCTGCCATTGGTGTCCATTGC-3’Prch1: 5'- CCTGAATTCCTGCCATTGGTGTCCATTGC -3'

EcoR Ⅰ EcoR Ⅰ

Prch2:5’-GGAGATATCCATTTCCAGGCTGATAGTG-3’Prch2: 5'-GGA GATATC CATTTCCAGGCTGATAGTG-3'

EcoR Ⅰ EcoR Ⅰ

PCR程序:94℃变性1min,56℃复性1min,72℃延伸1min,30个循环。PCR program: Denaturation at 94°C for 1 min, renaturation at 56°C for 1 min, extension at 72°C for 1 min, 30 cycles.

扩增3’chlB基因的引物为:The primers for amplifying the 3'chlB gene are:

Prch3:5’-GCGGTACCGCCATTGTATGGTCTCCAG-3’Prch3: 5'-GC GGTACC GCCATTGTATGGTCTCCAG-3'

Kpn Ⅰ Kpn I

Prch3:5’-CGCTGCAGCGGGTACATTAGTAGCGGTG-3’Prch3: 5'-CG CTGCAG CGGGTACATTAGTAGCGGTG-3'

Pst Ⅰ Pst I

PCR程序:94℃变性1min,56℃复性1min,72℃延伸1min,30个循环。PCR program: Denaturation at 94°C for 1 min, renaturation at 56°C for 1 min, extension at 72°C for 1 min, 30 cycles.

分别使用EcoR Ⅰ酶切扩增获得的5’chlB基因和p423质粒,连接并构建得到p423c质粒。分别使用Kpn Ⅰ和Pst Ⅰ酶切扩增获得的3’chlB基因和p423c质粒,连接并构建得到衣藻叶绿体表达载体p423chl。The obtained 5'chlB gene and p423 plasmid were respectively digested and amplified with EcoR Ⅰ, ligated and constructed to obtain the p423c plasmid. The obtained 3'chlB gene and p423c plasmid were digested and amplified with Kpn Ⅰ and Pst Ⅰ, respectively, and then ligated and constructed to obtain the Chlamydomonas chloroplast expression vector p423chl.

通过Nco Ⅰ和Pst Ⅰ双酶切可以切下aadA基因,并插入外源目的基因amicroRNAs-cre-MIRpepc1或amicroRNAs-cre-MIRpepc2,构建得到amicroRNAs-cre-MIRpepc1和amicroRNAs-cre-MIRpepc2基因表达盒(5’atpA∷amicroRNAs-cre-MIRpepc1∷3’rbcL和5’atpA∷amicroRNAs-cre-MIRpepc2∷3’rbcL)。使用EcoR Ⅴ和Sma Ⅰ双酶切,获得amicroRNAs-cre-MIRpepc1和amicroRNAs-cre-MIRpepc2基因表达盒,并与经EcoR Ⅴ双酶切的p423chl质粒连接,通过Xho Ⅰ酶切筛选正向连接的质粒,构建得到含有aadA基因表达盒和amicroRNAs-cre-MIRpepc1或amicroRNAs-cre-MIRpepc2基因表达盒的PamicroRNAs-cre-MIRpepc1-chl和PamicroRNAs-cre-MIRpepc2-chl质粒。衣藻叶绿体表达载体PamicroRNAs-cre-MIRpepc1-chl和PamicroRNAs-cre-MIRpepc2上携带有chlB基因外显子5′和3′端序列,在衣藻遗传转化过程中,作为同源转化片段,可使amicroRNAs-cre-MIRpepc1或amicroRNAs-cre-MIRpepc2基因定点整合入叶绿体DNA的chlB基因的5′和3′端序列之间的位置。The aadA gene can be excised by Nco Ⅰ and Pst Ⅰ double enzyme digestion, and the exogenous target gene amicroRNAs-cre-MIRpepc1 or amicroRNAs-cre-MIRpepc2 can be inserted to construct the amicroRNAs-cre-MIRpepc1 and amicroRNAs-cre-MIRpepc2 gene expression cassettes ( 5'atpA::amicroRNAs-cre-MIRpepc1::3'rbcL and 5'atpA::amicroRNAs-cre-MIRpepc2::3'rbcL). The amicroRNAs-cre-MIRpepc1 and amicroRNAs-cre-MIRpepc2 gene expression cassettes were obtained by double digestion with EcoR V and Sma I, and ligated with the p423chl plasmid that had been double digested with EcoR V, and the positively connected plasmids were screened by Xho I digestion , construct the PamicroRNAs-cre-MIRpepc1-chl and PamicroRNAs-cre-MIRpepc2-chl plasmids containing aadA gene expression cassette and amicroRNAs-cre-MIRpepc1 or amicroRNAs-cre-MIRpepc2 gene expression cassette. The Chlamydomonas chloroplast expression vectors PamicroRNAs-cre-MIRpepc1-chl and PamicroRNAs-cre-MIRpepc2 carry the chlB gene exon 5' and 3' end sequences, which can be used as homologous transformation fragments during the genetic transformation of Chlamydomonas The amicroRNAs-cre-MIRpepc1 or amicroRNAs-cre-MIRpepc2 gene is site-directedly integrated into the position between the 5' and 3' end sequences of the chlB gene of the chloroplast DNA.

(5)amicroRNAs-cre-MIRpepc1和amicroRNAs-cre-MIRpepc2基因在莱茵衣藻细胞的遗传转化(5) Genetic transformation of amicroRNAs-cre-MIRpepc1 and amicroRNAs-cre-MIRpepc2 genes in Chlamydomonas reinhardtii cells

(1)“珠磨法”遗传转化(1) "Bead milling method" genetic transformation

采用Plasmid Purification Kit分别提取重组质粒pH105-amicroRNAs-cre-MIRpepc1和pH105-amicroRNAs-cre-MIRpepc2。“珠磨法”具体步骤如下:(1)将细胞壁缺陷型莱茵衣藻cc-849(购自美国Duck大学衣藻中心)在连续光照和TAP培养液中培养至对数期,细胞数约为1-2×106cells/ml。5000rmp室温离心5min,收集藻细胞;弃上清;(2)用灭过菌的新鲜TAP培养液重悬藻细胞沉淀,调整细胞浓度至2×108cells/ml;(3)吸取270μl藻细胞悬浮液到1.5mlEP管里(里面有灭过菌的合金锡珠),加入1μg酶切成线状的pH105-amicroRNAs-cre-MIRpepc1和pH105-amicroRNAs-cre-MIRpepc2以及30μl50%PEG6000加到EP管中;同时建立一个不添加PEG6000的样品组;此外,还建立一个不添加DNA的对照组;(4)把衣藻细胞/合金锡珠/外源DNA混合物在振荡器上以最高速振荡25s;(5)把混合液转移到含有10ml新鲜TAP培养基的离心管中,在100rpm摇床弱光下过夜培养(22-25℃),使细胞恢复;(6)3000rmp室温离心5min,收集细胞,弃上清;用500μl新鲜TAP培养液小心重悬细胞,加入3.5ml0.5%TAP培养基,混匀后倒在含有10μg/ml的Zeomycin TAP固体平板上,置于22-25℃光照培养箱里倒置培养约3周,待平板上长出绿色的单克隆。use Plasmid Purification Kit extracted recombinant plasmids pH105-amicroRNAs-cre-MIRpepc1 and pH105-amicroRNAs-cre-MIRpepc2 respectively. The specific steps of the "bead milling method" are as follows: (1) Cultivate the cell wall-deficient Chlamydomonas reinhardtii cc-849 (purchased from the Chlamydomonas Center of Duck University, USA) to the logarithmic phase in continuous light and TAP medium, and the number of cells is about 1-2×10 6 cells/ml. Centrifuge at 5000rmp for 5min at room temperature to collect the algal cells; discard the supernatant; (2) Resuspend the algal cell pellet with sterilized fresh TAP culture medium, and adjust the cell concentration to 2×10 8 cells/ml; (3) Pipette 270 μl of algal cells Put the suspension into a 1.5ml EP tube (with sterilized alloy tin beads inside), add 1 μg enzyme-cut linear pH105-amicroRNAs-cre-MIRpepc1 and pH105-amicroRNAs-cre-MIRpepc2 and 30μl 50% PEG6000 to the EP tube At the same time, a sample group without PEG6000 was established; in addition, a control group without DNA was also established; (4) the mixture of Chlamydomonas cells/alloy tin beads/exogenous DNA was shaken at the highest speed for 25s on the oscillator; (5) Transfer the mixture to a centrifuge tube containing 10ml of fresh TAP medium, and culture overnight (22-25°C) on a 100rpm shaker under low light to recover the cells; (6) Centrifuge at 3000rmp for 5min at room temperature to collect the cells. Discard the supernatant; carefully resuspend the cells with 500 μl of fresh TAP medium, add 3.5ml of 0.5% TAP medium, mix well and pour it on a Zeomycin TAP solid plate containing 10 μg/ml, and place it in a light incubator at 22-25°C Cultivate it upside down for about 3 weeks, until green monoclones grow on the plate.

(2)“基因枪法”遗传转化(2) "Gene gun" genetic transformation

“基因枪”遗传转化在无菌超净工作台中使用基因枪(Bio-Rad)进行。具体步骤如下:(1)莱茵衣藻cc-2654(购自美国Duck大学衣藻中心)在TAP培养液中培养至对数生长期(1-2×106cells/ml),5000rmp室温离心5min,收集藻细胞;弃上清;用灭过菌的新鲜TAP培养液重悬藻细胞沉淀,调整细胞浓度至2×108cells/mL;吸取300μL藻细胞悬浮液涂布于TAP固体平板中央(直径~3cm);22-25℃光照培养(~90μE/m2/s)24h,待平板表面形成一层细胞层。(2)取100μL金粉悬浮液(60mg/mL),依次加入5μg质粒(PamicroRNAs-cre-MIRpepc1-chl或PamicroRNAs-cre-MIRpepc2-chl)(100μg/μL)、100Μl 2.5M CaCl2和40μL0.1M亚精胺,通过漩涡振荡器振荡2-3分钟,静置1分钟,8,000rpm室温离心2秒,弃上清;加入280μL 70%乙醇清洗,弃上清;加入280μL无水乙醇清洗,弃上清;加入100μL无水乙醇,轻轻重悬。(3)取10μL DNA金粉包被液用于轰击;轰击参数如下所示:可裂膜氦气压力1100psi,真空度25inches·Hg,轰击距离9cm,金粉颗粒直径100nm;(4)把轰击后的平板放置于22-25℃光照培养箱中,光照培养8h。用1mL新鲜TAP培养液将衣藻细胞洗下,涂布于抗生素筛选平板(转PamicroRNAs-cre-MIRpepc1-chl或PamicroRNAs-cre-MIRpepc2-chl质粒)培养约3周,待平板上长出绿色单克隆。"Gene gun" genetic transformation was performed using a gene gun (Bio-Rad) in a sterile ultra-clean bench. The specific steps are as follows: (1) Chlamydomonas reinhardtii cc-2654 (purchased from the Chlamydomonas Center of Duck University, USA) was cultured in TAP medium until the logarithmic growth phase (1-2×10 6 cells/ml), centrifuged at 5000rmp room temperature for 5min , collect the algal cells; discard the supernatant; resuspend the algal cell pellet with sterilized fresh TAP culture medium, and adjust the cell concentration to 2×10 8 cells/mL; pipette 300 μL of the algal cell suspension and spread it on the center of the TAP solid plate ( Diameter ~ 3cm); Incubate under light at 22-25°C (~90μE/m 2 /s) for 24h, until a layer of cells is formed on the surface of the plate. (2) Take 100μL gold powder suspension (60mg/mL), add 5μg plasmid (PamicroRNAs-cre-MIRpepc1-chl or PamicroRNAs-cre-MIRpepc2-chl) (100μg/μL), 100μl 2.5M CaCl 2 and 40μL 0.1M For spermidine, vortex for 2-3 minutes, let stand for 1 minute, centrifuge at 8,000 rpm for 2 seconds at room temperature, discard the supernatant; add 280 μL of 70% ethanol to wash, discard the supernatant; add 280 μL absolute ethanol to wash, discard the supernatant Clear; add 100 μL of absolute ethanol and gently resuspend. (3) Take 10 μL of DNA gold powder coating solution for bombardment; the bombardment parameters are as follows: split membrane helium pressure 1100 psi, vacuum degree 25 inches Hg, bombardment distance 9 cm, gold powder particle diameter 100 nm; The plates were placed in a light incubator at 22-25°C, and incubated in light for 8 hours. Wash the Chlamydomonas cells with 1 mL of fresh TAP culture solution, spread them on an antibiotic screening plate (transfer of PamicroRNAs-cre-MIRpepc1-chl or PamicroRNAs-cre-MIRpepc2-chl plasmid) and culture for about 3 weeks, until green single cells grow on the plate. clone.

(6)转人工microRNAs基因藻的筛选与鉴定(6) Screening and identification of transgenic microRNAs gene algae

莱茵衣藻转化涂板后,约一个月左右长出单克隆。挑选转化子接种到空白平板TAP培养基上,待单克隆子长出来之后,再接种到液体培养基,待生长到对数期之后,提取基因组DNA,按调控amicroRNAs-cre-MIRpepc1和amicroRNAs-cre-MIRpepc2设计引物对其进行基因组PCR实验。After Chlamydomonas reinhardtii was transformed and plated, a single colony grew about a month or so. Select the transformant and inoculate it on the blank plate TAP medium. After the monoclonal grows out, inoculate it into the liquid medium. After the growth reaches the logarithmic phase, extract the genomic DNA, and regulate the amicroRNAs-cre-MIRpepc1 and amicroRNAs-cre -MIRpepc2 designed primers for genome PCR experiments.

将PCR产物回收纯化之后,送去上海生工进行测序,将分子生物学确认的转化子经过实验室继代培养数月后,按上述方法进一步证实其转化子的稳定性。After recovering and purifying the PCR products, they were sent to Shanghai Sangong for sequencing. The transformants confirmed by molecular biology were subcultured in the laboratory for several months, and the stability of the transformants was further confirmed according to the above method.

(7)转基因藻脂肪酸产量的调控及检测(7) Regulation and detection of fatty acid production of transgenic algae

将转基因藻液接种到TPA液体培养基内,接种后培养到对数期。将培养至对数期的藻液,进行0.5小时热激后光恢复生长,离心收集藻细胞,干燥后,提取脂肪酸并甲酯化。将提取好的脂肪酸甲酯样品打入GC-MS气相-质谱联用仪进行检测。Inoculate the transgenic algae liquid into the TPA liquid medium, and cultivate to the logarithmic phase after inoculation. The algae liquid cultured to the logarithmic phase is subjected to 0.5 hours of heat shock to restore growth, and the algal cells are collected by centrifugation. After drying, fatty acids are extracted and methylated. The extracted fatty acid methyl ester samples were injected into a GC-MS gas phase-mass spectrometer for detection.

本研究利用GC-MS气相-质谱联用仪对提取的脂肪酸样品进行分析。首先需要对脂肪酸的标准品进行检测,本实验所使用的标准品是在上海安普公司购买的37种脂肪酸甲酯混合标准品。检测脂肪酸样品前,需要先设定合适的程序,使混合标准品中的37种脂肪酸甲酯得到较好的分离效果,使所有的峰为单峰且在基线处分离。In this study, GC-MS gas chromatography-mass spectrometry was used to analyze the extracted fatty acid samples. Firstly, it is necessary to detect the fatty acid standard. The standard used in this experiment is a mixed standard of 37 fatty acid methyl esters purchased from Shanghai Anpu Company. Before detecting fatty acid samples, it is necessary to set up an appropriate program so that the 37 fatty acid methyl esters in the mixed standard can be separated better, so that all peaks are single peaks and separated at the baseline.

确定了检测流程与方法之后,对对照组与转化子进行了检测。通过参考37种脂肪酸甲酯混标的出峰时间和质谱结果,检测出莱茵衣藻cc849脂肪酸主要由C16:0(棕榈酸甲酯)、C16:1、C18:0(硬脂酸)、C18:1T(油酸)、C18:2T(亚油酸)和C18:3n3(α-亚麻酸)组成。转化子与照组与的各组分出峰时间基本一致,表明脂肪酸组份一致。研究中利用热激以及强光恢复等处理手段进行检测。在不同的处理条件下,转化子与对照组的脂肪酸含量随之不同。After determining the detection process and method, the control group and transformants were detected. By referring to the peak time and mass spectrum results of 37 kinds of fatty acid methyl ester mixed standards, it was detected that the fatty acids of Chlamydomonas reinhardtii cc849 were mainly composed of C16:0 (methyl palmitate), C16:1, C18:0 (stearic acid), C18: 1T (oleic acid), C18:2T (linoleic acid) and C18:3n3 (alpha-linolenic acid). The peak times of the transformants and the control group were basically the same, indicating that the fatty acid components were consistent. In the research, treatment methods such as heat shock and strong light recovery were used for detection. Under different treatment conditions, the fatty acid content of the transformant and the control group were different accordingly.

实验采用热激的方法,40°热激30min,热激后光恢复生长24h,5000rpm离心5min收集藻细胞。冷冻干燥后,提取总脂样品并甲酯化。对样品使用GC-MS检测。从图1和图2可以看到转化子的脂肪酸含量有一个较大的提高,相较与对照组(在图中使用*表示;*表示与对照组相比具有显著性差异;**表示对照组相比具有极显著差异),最高提升了近20%。通过人工microRNAs对于藻细胞进行着预期的调控作用,本研究为日后微藻制备生物柴油的产业化发展打下了坚实的基础。The method of heat shock was used in the experiment, 40° heat shock for 30 minutes, after heat shock, the light recovery growth was 24 hours, and the algae cells were collected by centrifugation at 5000rpm for 5 minutes. After lyophilization, total lipid samples were extracted and methylated. Samples were detected using GC-MS. From Fig. 1 and Fig. 2, it can be seen that the fatty acid content of the transformants has a larger improvement, compared with the control group (using * to represent in the figure; * represents having significant difference compared with the control group; ** represents the control group There is a very significant difference compared with the group), and the highest improvement is nearly 20%. Artificial microRNAs have the expected regulatory effect on algal cells, and this study has laid a solid foundation for the industrial development of microalgae to prepare biodiesel in the future.

以上所述是本发明的优选实施例,应当指出,对于本技术领域的普通技术人员来说,在不脱离本发明所述原理的前提下,还可以作出若干改进和润饰,这些改进和润饰也应视为本发明的保护范围。The above description is a preferred embodiment of the present invention, it should be pointed out that for those of ordinary skill in the art, without departing from the principle of the present invention, some improvements and modifications can also be made, and these improvements and modifications can also be made. It should be regarded as the protection scope of the present invention.

Claims (2)

1. Chlamydomonas reinhardtii microRNAs gene, it is characterised in that its sequence is SEQ ID NO.1 or SEQ ID NO.2.
2. the application in improving Chlamydomonas reinhardtii content of fatty acid of the microRNAs gene described in claim 1.
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