CN103695406A - Tulip phenylalanine ammonialyase TfPAL protein and coding gene thereof - Google Patents
Tulip phenylalanine ammonialyase TfPAL protein and coding gene thereof Download PDFInfo
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- CN103695406A CN103695406A CN201310689303.4A CN201310689303A CN103695406A CN 103695406 A CN103695406 A CN 103695406A CN 201310689303 A CN201310689303 A CN 201310689303A CN 103695406 A CN103695406 A CN 103695406A
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- C—CHEMISTRY; METALLURGY
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- C12N—MICROORGANISMS OR ENZYMES; COMPOSITIONS THEREOF; PROPAGATING, PRESERVING, OR MAINTAINING MICROORGANISMS; MUTATION OR GENETIC ENGINEERING; CULTURE MEDIA
- C12N9/00—Enzymes; Proenzymes; Compositions thereof; Processes for preparing, activating, inhibiting, separating or purifying enzymes
- C12N9/88—Lyases (4.)
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- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Y—ENZYMES
- C12Y403/00—Carbon-nitrogen lyases (4.3)
- C12Y403/01—Ammonia-lyases (4.3.1)
- C12Y403/01024—Phenylalanine ammonia-lyase (4.3.1.24)
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- Organic Chemistry (AREA)
- Life Sciences & Earth Sciences (AREA)
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- Molecular Biology (AREA)
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- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
Abstract
本发明公开了一种郁金香苯丙氨酸解氨酶TfPAL蛋白及其编码基因,所述蛋白质为如SEQ ID NO.2所示的氨基酸序列组成的蛋白质或如SEQ ID NO.2所示的氨基酸序列经过取代、缺失或者添加一个或几个氨基酸且具有郁金香苯丙氨酸解氨酶活性的蛋白质。本发明还提供了一种编码上述蛋白质的如SEQ ID NO.1所示的核酸序列。本发明为今后利用基因工程技术调控郁金香TfPAL基因的时空表达特性,从而调控花色提供了理论依据,具有实践应用价值。The invention discloses a tulip phenylalanine ammonia-lyase TfPAL protein and its coding gene, the protein is composed of the amino acid sequence shown in SEQ ID NO.2 or the amino acid shown in SEQ ID NO.2 A protein whose sequence has undergone substitution, deletion or addition of one or several amino acids and has tulip phenylalanine ammonia lyase activity. The present invention also provides a nucleic acid sequence as shown in SEQ ID NO.1 encoding the above protein. The invention provides a theoretical basis for regulating the spatiotemporal expression characteristics of the tulip TfPAL gene by genetic engineering technology in the future, thereby regulating the flower color, and has practical application value.
Description
技术领域technical field
本发明属于植物分子生物学领域,涉及郁金香花色苷合成途径中的关健酶及其编码基因,具体涉及一种郁金香苯丙氨酸解氨酶TfPAL蛋白及其编码基因。The invention belongs to the field of plant molecular biology, and relates to a key enzyme in the synthetic pathway of tulip anthocyanins and its encoding gene, in particular to a tulip phenylalanine ammonia-lyase TfPAL protein and its encoding gene.
背景技术Background technique
苯丙氨酸解氨酶(Phenylalanine ammonia-lyase,PAL)为植物苯丙烷类物质代谢途径的关键酶(Okada等,2008),是连接初生代谢和次生代谢的纽带,它在类黄酮、黄酮醇、花青素、单宁、异黄酮、黄烷酮、木质素、香豆素、芥子酸酯和水杨酸等次生代谢产物合成中起着重要作用,这些物质涉及植物生长发育、抗虫抗病、信号转导、紫外线防御和花粉育性等方面(Dixon等,2002),因此PAL与植物有着十分密切的关系,是近年来的研究热点。Phenylalanine ammonia-lyase (PAL) is a key enzyme in the metabolic pathway of phenylpropanoids in plants (Okada et al., 2008), and is the link connecting primary metabolism and secondary metabolism. Alcohol, anthocyanin, tannin, isoflavone, flavanone, lignin, coumarin, sinapinate and salicylic acid play an important role in the synthesis of secondary metabolites, which are involved in plant growth and development, resistance Insect resistance, signal transduction, UV protection, and pollen fertility (Dixon et al., 2002), so PAL has a very close relationship with plants, and it has become a research hotspot in recent years.
近年来,已有研究者对包括凤仙花、尾穗苋、甜叶菊、甘薯、玉米、棉花和桃在内多种植物的PAL活性进行了研究,结果表明:(1)PAL的活性与植物花色苷含量明显正相关。(2)强光、激素、低温、机械损伤及病虫害侵染都可以诱异PAL活性升高。(3)PAL活性与组织中氮素含量呈负相关。具体到PAL活性与花色苷合成的关系,Arakawa认为,活性受光调节的PAL才是花色苷合成的关键酶(Arakawa O,1988)。苹果果皮中PAL活性的增加伴随着花色苷含量的增加,但可能不是控制花色苷的唯一关键酶(周爱琴等,1997)。另有研究证实乙烯可以通过诱导PAL活性而提高花色苷合成量(Cheng G和Breen P,1991)In recent years, researchers have studied the PAL activity of various plants including impatiens, amaranth, stevia, sweet potato, corn, cotton and peach. The results showed that: (1) The activity of PAL is related to Anthocyanin content was significantly positively correlated. (2) Strong light, hormones, low temperature, mechanical damage and infection by pests and diseases can all induce the increase of PAL activity. (3) PAL activity was negatively correlated with nitrogen content in tissues. Specific to the relationship between PAL activity and anthocyanin synthesis, Arakawa believes that PAL whose activity is regulated by light is the key enzyme for anthocyanin synthesis (Arakawa O, 1988). The increase of PAL activity in apple peel was accompanied by the increase of anthocyanin content, but it may not be the only key enzyme controlling anthocyanin (Zhou Aiqin et al., 1997). Another study confirmed that ethylene can increase anthocyanin synthesis by inducing PAL activity (Cheng G and Breen P, 1991)
PAL基因在植物中以多基因家族的形式存在,覆盆子中至少有2个基因成员,拟南芥中有4个成员,番茄中至少有26个,而马铃薯(Solanum tuberosum)中更多,估计有40~50个(Chang等2008;Joos和Hahlbrock,1992;Kumar和Ellis,2001)。PAL存在于所有绿色植物中,已从水稻、小麦、玉米等多种植物中得到分离纯化,真菌和藻类细胞中也有发现(Heilmann和Merfort,1998)。但郁金香(Tulipa fosteriana)中PAL基因的克隆及其表达模式尚不清楚。目前,未有任何与郁金香PAL蛋白及其编码基因序列相关的文献报道。PAL genes exist as multigene families in plants, with at least 2 gene members in raspberry, 4 members in Arabidopsis, at least 26 members in tomato, and more in potato (Solanum tuberosum), estimated There are 40-50 (Chang et al. 2008; Joos and Hahlbrock, 1992; Kumar and Ellis, 2001). PAL exists in all green plants, and has been isolated and purified from various plants such as rice, wheat, and corn, and has also been found in fungal and algal cells (Heilmann and Merfort, 1998). But the cloning and expression pattern of the PAL gene in tulip (Tulipa fosteriana) is still unclear. At present, there is no literature report related to tulip PAL protein and its coding gene sequence.
发明内容Contents of the invention
本发明的目的在于提供一种郁金香苯丙氨酸解氨酶TfPAL蛋白及其编码基因。本发明提供了一种郁金香TfPAL蛋白序列,以及一种编码上述蛋白质的核酸序列;公开了郁金香TfPAL蛋白及其核苷酸序列在郁金香不同器官、不同发育阶段的表达模式;为今后利用基因工程技术调控郁金香TfPAL基因的时空表达特性,从而主调控花色提供了理论依据,具有一定的应用价值。The object of the present invention is to provide a tulip phenylalanine ammonia lyase TfPAL protein and its coding gene. The invention provides a tulip TfPAL protein sequence, and a nucleic acid sequence encoding the protein; discloses the expression patterns of the tulip TfPAL protein and its nucleotide sequence in different organs and different developmental stages of tulip; Regulating the spatio-temporal expression characteristics of the tulip TfPAL gene, thereby providing a theoretical basis for the main regulation of flower color, has a certain application value.
本发明的目的是通过以下技术方案实现的,The purpose of the present invention is achieved by the following technical solutions,
第一方面,本发明涉及一种具有郁金香苯丙氨酸解氨酶活性的蛋白质,所述蛋白质是由如SEQ ID NO.2所示的氨基酸序列组成的蛋白质;或由SEQ ID NO.2所示的氨基酸序列经过取代、缺失或者添加一个或几个氨基酸且具有郁金香苯丙氨酸解氨酶活性的由(a)衍生的蛋白质。该蛋白质在花朵花瓣的不同着色阶段、不同器官内的有无及活性大小存在较大差异。In a first aspect, the present invention relates to a protein having tulip phenylalanine ammonia lyase activity, said protein is a protein consisting of the amino acid sequence shown in SEQ ID NO.2; or represented by SEQ ID NO.2 A protein derived from (a) that has substituted, deleted or added one or several amino acids in the amino acid sequence shown and has tulip phenylalanine ammonia lyase activity. There are large differences in the presence or absence and activity of the protein in different coloring stages of flower petals, in different organs.
优选的,所述蛋白质为SEQ ID NO.2所示氨基酸序列经过1~50个氨基酸的缺失、插入和/或取代,或者在C末端和/或N末端添加1~20个以内氨基酸而得到的序列。Preferably, the protein is obtained by deletion, insertion and/or substitution of 1 to 50 amino acids in the amino acid sequence shown in SEQ ID NO.2, or by adding 1 to 20 amino acids at the C-terminal and/or N-terminal sequence.
进一步优选的,所述蛋白质为SEQ ID NO.2所示氨基酸序列中1~10个氨基酸被性质相似或相近的氨基酸所替换而形成的序列。Further preferably, the protein is a sequence formed by replacing 1 to 10 amino acids in the amino acid sequence shown in SEQ ID NO.2 by amino acids with similar or similar properties.
第二方面,本发明涉及一种编码上述蛋白质的核酸序列。In a second aspect, the present invention relates to a nucleic acid sequence encoding the above-mentioned protein.
优选的,所述核酸序列具体为:Preferably, the nucleic acid sequence is specifically:
(a)碱基序列如SEQ ID NO.1第1~2136位所示;(a) The base sequence is as shown in the 1st to 2136th positions of SEQ ID NO.1;
或(b)与SEQ ID NO.1第1~2136位所示的核酸有至少70%的同源性的序列;or (b) a sequence having at least 70% homology with the nucleic acid shown in positions 1 to 2136 of SEQ ID NO.1;
或(c)能与SEQ ID NO.1第1~2136位所示的核酸进行杂交的序列。Or (c) a sequence capable of hybridizing to the nucleic acid shown in positions 1 to 2136 of SEQ ID NO.1.
优选的,所述核酸序列具体为SEQ ID NO.1第1~2136位所示的核酸序列中1~90个核苷酸的缺失、插入和/或取代,以及在5’和/或3’端添加60个以内核苷酸形成的序列。Preferably, the nucleic acid sequence is specifically the deletion, insertion and/or substitution of 1 to 90 nucleotides in the nucleic acid sequence shown in positions 1 to 2136 of SEQ ID NO.1, and 5' and/or 3' A sequence formed by adding 60 or less nucleotides at the end.
本发明提供的分离出的DNA分子,该分子包括:具有SEQ ID NO.1所示核苷酸序列的DNA分子;或者编码具有郁金香TfPAL蛋白质活性的多肽的核苷酸序列,而且与SEQ ID NO.1所示序列有至少70%的同源性;或者能与SEQ ID NO.1所示序列的核苷酸序列杂交。The isolated DNA molecule provided by the present invention comprises: a DNA molecule having a nucleotide sequence shown in SEQ ID NO.1; or a nucleotide sequence encoding a polypeptide having tulip TfPAL protein activity, and is identical to SEQ ID NO. .1 The sequence shown in 1 has at least 70% homology; or can hybridize with the nucleotide sequence of the sequence shown in SEQ ID NO.1.
在本发明中,“分离的DNA”、“纯化的DNA”是指,该DNA或片段已从天然状态下位于其两侧的序列中分离出来,还指该DNA或片段已经与天然状态下伴随核酸的组分分开,而且已经与在细胞中相伴随的蛋白质分开。In the present invention, "isolated DNA" and "purified DNA" mean that the DNA or fragment has been separated from the sequences on both sides of it in the natural state, and it also means that the DNA or fragment has been accompanied by the natural state. The components of the nucleic acid are separated and have been separated from the proteins that accompany them in the cell.
在本发明中,术语“郁金香苯丙氨酸解氨酶TfPAL蛋白编码基因”指编码具有郁金香TfPAL蛋白活性的多肽的核苷酸序列,如SEQ ID NO.1所示核苷酸序列及其简并序列。该简并序列是指,位于SEQ ID NO.1所示序列中,有一个或多个密码子被编码相同氨基酸的简并密码子所取代后而产生的序列。由于密码子的简并性,所以与SEQ ID NO.1所示序列的同源性低至约70%的简并序列也能编码出SEQ ID NO.2所示的氨基酸序列。该术语还包括与SEQ ID NO.1所示序列中从核苷酸第1~2136位的核苷酸序列的同源性至少70%的核苷酸序列。In the present invention, the term "tulip phenylalanine ammonia-lyase TfPAL protein coding gene" refers to the nucleotide sequence encoding a polypeptide having tulip TfPAL protein activity, such as the nucleotide sequence shown in SEQ ID NO.1 and its abbreviation and sequence. The degenerate sequence refers to a sequence generated after one or more codons are replaced by degenerate codons encoding the same amino acid in the sequence shown in SEQ ID NO.1. Due to the degeneracy of codons, a degenerate sequence with as low as about 70% homology to the sequence shown in SEQ ID NO.1 can also encode the amino acid sequence shown in SEQ ID NO.2. The term also includes a nucleotide sequence with at least 70% homology to the nucleotide sequence from nucleotides 1 to 2136 in the sequence shown in SEQ ID NO.1.
该术语还包括能编码具有与天然的郁金香TfPAL相同功能的蛋白的SEQ ID NO.1所示序列的变异形式。这些变异形式包括(但并不限于):通常为1~90个核苷酸的缺失、插入和/或取代,以及在5’和/或3’端添加为60个以内核苷酸。The term also includes variants of the sequence shown in SEQ ID NO. 1 that can encode a protein with the same function as native tulip TfPAL. These variations include (but are not limited to): deletions, insertions and/or substitutions of usually 1 to 90 nucleotides, and additions of up to 60 nucleotides at the 5' and/or 3' ends.
在本发明中,术语“郁金香苯丙氨酸解氨酶TfPAL蛋白”是指具有郁金香TfPAL蛋白活性的SEQ ID NO.2所示序列的多肽。该术语还包括具有与天然郁金香TfPAL相关相同功能的、SEQ ID NO.2所示序列的变异形式。这些变异形式包括(但并不限于):通常为1~50个氨基酸的缺失、插入和/或取代,以及在C末端和/或N末端添加一个或为20个以内氨基酸。例如,在本领域中,用性能相近或相似的氨基酸进行取代时,通常不会改变蛋白质的功能。又比如,在C末端和/或N末端添加一个或数个氨基酸通常也不会改变蛋白质的功能。该术语还包括郁金香TfPAL蛋白的活性片段和活性衍生物。In the present invention, the term "tulip phenylalanine ammonia-lyase TfPAL protein" refers to a polypeptide having the sequence shown in SEQ ID NO.2 having tulip TfPAL protein activity. The term also includes variants of the sequence shown in SEQ ID NO.2 that have the same function as the natural tulip TfPAL. These variant forms include (but are not limited to): usually 1-50 amino acid deletions, insertions and/or substitutions, and addition of one or less than 20 amino acids at the C-terminal and/or N-terminal. For example, in the art, substitutions with amino acids with similar or similar properties generally do not change the function of the protein. As another example, adding one or several amino acids at the C-terminus and/or N-terminus usually does not change the function of the protein. The term also includes active fragments and active derivatives of the tulip TfPAL protein.
本发明的郁金香TfPAL多肽的变异形式包括:同源序列、保守性变异体、等位变异体、天然突变体、诱导突变体、在高或低的严谨条件下能与郁金香TfPAL相关DNA杂交的DNA所编码的蛋白、以及利用郁金香TfPAL多肽的抗血清获得的多肽或蛋白。Variant forms of the tulip TfPAL polypeptide of the present invention include: homologous sequences, conservative variants, allelic variants, natural mutants, induced mutants, DNA capable of hybridizing with tulip TfPAL-related DNA under high or low stringent conditions The encoded protein, and the polypeptide or protein obtained by using the antiserum of tulip TfPAL polypeptide.
在本发明中,“郁金香TfPAL保守性变异多肽”指与SEQ ID NO.2所示序列的氨基酸序列相比,有至多10个氨基酸被性质相似或相近的氨基酸所替换而形成多肽。这些保守性变异多肽最好根据表1进行替换而产生。In the present invention, "Tulip TfPAL conservative variant polypeptide" means that compared with the amino acid sequence shown in SEQ ID NO.2, at most 10 amino acids are replaced by amino acids with similar or similar properties to form a polypeptide. These conservative variant polypeptides are preferably produced by substitutions according to Table 1.
表1Table 1
发明还包括郁金香TfPAL蛋白或多肽的类似物。这些类似物与郁金香TfPAL相关多肽的差别可以是氨基酸序列上的差异,也可以是不影响序列的修饰形式上的差异,或者兼而有之。这些多肽包括天然或诱导的遗传变异体。诱导变异体可以通过各种技术得到,如通过辐射或暴露于诱变剂而产生随机诱变,还可通过定点诱变法或其它已知分子生物学的技术。类似物还包括具有不同于天然L-氨基酸的残基(如D-氨基酸)的类似物,以及具有非天然存在的或合成的氨基酸(如β、γ-氨基酸)的类似物。应理解,本发明的多肽并不限于上述列举的代表性的多肽。The invention also includes analogs of tulip TfPAL protein or polypeptide. The difference between these analogues and the TfPAL-related polypeptide of Tulip may be the difference in the amino acid sequence, or the difference in the modified form that does not affect the sequence, or both. These polypeptides include natural or induced genetic variants. Induced variants can be obtained by various techniques, such as random mutagenesis by radiation or exposure to mutagens, but also by site-directed mutagenesis or other techniques known in molecular biology. Analogs also include analogs with residues other than natural L-amino acids (eg, D-amino acids), and analogs with non-naturally occurring or synthetic amino acids (eg, β, γ-amino acids). It should be understood that the polypeptides of the present invention are not limited to the representative polypeptides listed above.
修饰(通常不改变一级结构)形式包括:体内或体外的多肽的化学衍生形式如乙酰化或羧基化。修饰还包括糖基化,如那些在多肽的合成和加工中或进一步加工步骤中进行糖基化修饰而产生的多肽。这种修饰可以通过将多肽暴露于进行糖基化的酶(如哺乳动物的糖基化酶或去糖基化酶)而完成。修饰形式还包括具有磷酸化氨基酸残基(如磷酸酪氨酸,磷酸丝氨酸,磷酸苏氨酸)的序列。还包括被修饰从而提高了其抗蛋白水解性能或优化了溶解性能的多肽。Modified (usually without altering primary structure) forms include: chemically derivatized forms of polypeptides such as acetylation or carboxylation, in vivo or in vitro. Modifications also include glycosylation, such as those resulting from polypeptides that are modified by glycosylation during synthesis and processing of the polypeptide or during further processing steps. Such modification can be accomplished by exposing the polypeptide to an enzyme that performs glycosylation, such as a mammalian glycosylase or deglycosylation enzyme. Modified forms also include sequences with phosphorylated amino acid residues (eg, phosphotyrosine, phosphoserine, phosphothreonine). Also included are polypeptides that have been modified to increase their resistance to proteolysis or to optimize solubility.
在本发明中,可用实时荧光定量PCR的方法分析郁金香TfPAL基因产物的表达模式,即分析TfPAL基因的mRNA转录物在细胞中的存在与否和数量。In the present invention, the expression pattern of tulip TfPAL gene product can be analyzed by real-time fluorescence quantitative PCR method, that is, the presence or quantity of the mRNA transcript of TfPAL gene in cells can be analyzed.
此外,根据本发明的郁金香TfPAL核苷酸序列和氨基酸序列,可以在核酸同源性或表达蛋白质的同源性基础上,筛选郁金香TfPAL相关同源基因或同源蛋白。In addition, according to the TfPAL nucleotide sequence and amino acid sequence of the present invention, the TfPAL-related homologous genes or proteins of Tulip can be screened on the basis of nucleic acid homology or homology of expressed proteins.
为了得到与郁金香TfPAL相关基因的点阵,可以用DNA探针筛选郁金香cDNA文库,这些探针是在低严谨条件下,用32P对郁金香TfPAL相关的全部或部分做放射活性标记而得的。适合于筛选的cDNA文库是来自郁金香的文库。构建来自感兴趣的细胞或者组织的cDNA文库的方法是分子生物学领域众所周知的。另外,许多这样的cDNA文库也可以购买到,例如购自Clontech,Stratagene,Palo Alto,Cal.。这种筛选方法可以识别与郁金香TfPAL相关的基因家族的核苷酸序列。In order to obtain the array of genes related to tulip TfPAL, the cDNA library of tulip can be screened with DNA probes, which are obtained by radioactively labeling all or part of tulip TfPAL with 32 P under low stringency conditions. A suitable cDNA library for screening is the library from Tulip. Methods for constructing cDNA libraries from cells or tissues of interest are well known in the art of molecular biology. In addition, many such cDNA libraries are commercially available, eg, from Clontech, Stratagene, Palo Alto, Cal. This screening method can identify the nucleotide sequences of gene families related to tulip TfPAL.
本发明的郁金香TfPAL相关核苷酸全长序列或其片段通常可以用PCR扩增法、重组法或人工合成的方法获得。对于PCR扩增法,可根据本发明所公开的有关核苷酸序列,尤其是开放阅读框序列来设计引物,并用市售的cDNA库或按本领域技术人员已知的常规方法所制备的cDNA库作为模板,扩增而得有关序列。当序列较长时,常常需要进行两次或多次PCR扩增,然后再将各次扩增出的片段按正确次序拼接在一起。The full-length sequence of TfPAL-related nucleotides of the present invention or its fragments can usually be obtained by PCR amplification, recombination or artificial synthesis. For the PCR amplification method, primers can be designed according to the relevant nucleotide sequences disclosed in the present invention, especially the open reading frame sequence, and the cDNA prepared by a commercially available cDNA library or a conventional method known to those skilled in the art can be used. The library is used as a template to amplify related sequences. When the sequence is long, it is often necessary to carry out two or more PCR amplifications, and then splice together the amplified fragments in the correct order.
在获得了有关序列后,可用重组法来大批量地获得有关序列。这通常是将其克隆入载体,再转入细胞,然后通过常规方法从增殖后的宿主细胞中分离得到有关序列。After the relevant sequences are obtained, the relevant sequences can be obtained in large quantities by recombination. Usually, it is cloned into a vector, then transformed into a cell, and then the relevant sequence is isolated from the proliferated host cell by conventional methods.
此外,还可通过化学合成将突变引入本发明蛋白序列中。In addition, mutations can also be introduced into the protein sequences of the invention by chemical synthesis.
除了用重组法产生之外,本发明蛋白的片段还可用固相技术,通过直接合成肽而加以生产(Stewart等人,(1969)固相多肽合成,WH Freeman Co.,San Francisco;Merrifield J.(1963)J.Am Chem.Soc85:2149-2154)。在体外合成蛋白质可以用手工或自动进行。例如,可以用Applied Biosystems的431A型肽合成仪(Foster City,CA)来自动合成肽。可以分别化学合成本发明蛋白的各片段,然后用化学方法加以连接以产生全长的分子。In addition to recombinant production, fragments of the proteins of the invention can also be produced by direct synthesis of peptides using solid phase techniques (Stewart et al., (1969) Solid Phase Polypeptide Synthesis, WH Freeman Co., San Francisco; Merrifield J. (1963) J. Am Chem. Soc 85:2149-2154). Protein synthesis in vitro can be performed manually or automatically. For example, peptides can be synthesized automatically using an Applied Biosystems Model 431A Peptide Synthesizer (Foster City, CA). Fragments of a protein of the invention can be chemically synthesized separately and then chemically linked to produce a full-length molecule.
郁金香为世界十大切花之一,观赏价值极高,应用广泛,丰富花色为郁金香育种的主要目的之一。本发明的有益效果在于:首次公开了郁金香花瓣中花色苷合成关键酶苯丙氨酸解氨酶TfPAL蛋白及其编码基因,为今后利用基因工程技术调控郁金香TfPAL基因的时空表达特性,从而调控花色提供了理论基础,具有一定的应用价值。Tulip is one of the top ten cut flowers in the world. It has high ornamental value and is widely used. Enriching flower colors is one of the main purposes of tulip breeding. The beneficial effect of the present invention is that: for the first time, the key enzyme phenylalanine ammonia lyase TfPAL protein and its coding gene for the synthesis of anthocyanin in tulip petals are disclosed, so as to use genetic engineering technology to regulate the temporal and spatial expression characteristics of tulip TfPAL gene in the future, thereby regulating flower color It provides a theoretical basis and has certain application value.
具体实施方式Detailed ways
下面结合具体实施例对本发明进行详细说明。以下实施例将有助于本领域的技术人员进一步理解本发明,但不以任何形式限制本发明。应当指出的是,对本领域的普通技术人员来说,在不脱离本发明构思的前提下,还可以做出若干变形和改进。这些都属于本发明的保护范围。下列实施例中未注明具体条件的实验方法,通常按照常规条件,例如Sambrook等分子克隆:实验室手册(New York:Cold Spring Harbor LaboratoryPress,1989)中所述的条件,或按照制造厂商所建议的条件。The present invention will be described in detail below in conjunction with specific embodiments. The following examples will help those skilled in the art to further understand the present invention, but do not limit the present invention in any form. It should be noted that those skilled in the art can make several modifications and improvements without departing from the concept of the present invention. These all belong to the protection scope of the present invention. The experimental method that does not indicate specific conditions in the following examples, generally according to conventional conditions, such as molecular cloning such as Sambrook: the conditions described in the laboratory manual (New York: Cold Spring Harbor Laboratory Press, 1989), or according to the manufacturer's suggestion conditions of.
实施例1、郁金香TfPAL基因的克隆Embodiment 1, the cloning of tulip TfPAL gene
1.植物材料的获得1. Acquisition of plant material
将健康、大小一致的郁金香球茎(Tulipa fosteriana ‘Shangnongzaoxia’,已通过上海市农作物品种审定委员会审定。编号:沪农品认花卉2011第004号)按常规种植并进行田间管理,待花朵完全开放,花瓣完全着色时采集花瓣组织,用于提取RNA。Healthy, uniform-sized tulip bulbs (Tulipa fosteriana 'Shangnongzaoxia', approved by the Shanghai Crop Variety Approval Committee. Number: Shanghai Nongpin Recognition Flowers 2011 No. 004) were planted as usual and managed in the field until the flowers were fully open. Petal tissue was collected when the petals were fully colored for RNA extraction.
2.RNA的抽提2. Extraction of RNA
利用“RNA prep pure植物总RNA提取试剂盒”抽提总RNA(RNA prep pure PlantKit:天根生化科技(北京)有限公司)。用甲醛变性胶电泳鉴定RNA的完整性,然后在分光光度计(Thermo Scientific NANODROP 1000 Spectrophotometer)上测定RNA的纯度及浓度。Total RNA was extracted using the "RNA prep pure Plant Total RNA Extraction Kit" (RNA prep pure PlantKit: Tiangen Biochemical Technology (Beijing) Co., Ltd.). The integrity of RNA was identified by formaldehyde denaturing gel electrophoresis, and then the purity and concentration of RNA were determined on a spectrophotometer (Thermo Scientific NANODROP 1000 Spectrophotometer).
3.基因的全长克隆3. Full-length cloning of genes
根据其它物种中FLS基因的氨基酸保守序列,利用同源性基因克隆原理,采用RACE方法(3’-Full RACE Core Set Ver.2.0:宝生物工程(大连)有限公司,SMARTerTM RACEcDNA Amplification Kit:Clontech Laboratories,Inc.)进行cDNA全长克隆,分三个阶段进行:According to the conserved amino acid sequences of FLS genes in other species, using the principle of homologous gene cloning, the RACE method (3'-Full RACE Core Set Ver.2.0: Treasure Bioengineering (Dalian) Co., Ltd., SMARTer TM RACEcDNA Amplification Kit: Clontech Laboratories, Inc.) for full-length cDNA cloning in three stages:
(1)RT-PCR获得基因中间片段(1) RT-PCR to obtain the middle fragment of the gene
将提取的RNA进行反转录(Prime Script II 1st Strand cDNA Synthesis Kit:宝生物工程(大连)有限公司),以第一链cDNA为模板,利用引物TfPAL-F(5’-AACACCAYCCWGGYCARATT-3’)(序列如SEQ ID NO.3所示)和TfPAL-R(5’-GAGCAGTAWGAYGCCATK-3’)(序列如SEQ ID NO.4所示)进行PCR,扩增得中间片段,回收并连接到pMD18-T vector载体上,用RV-M和M13-47作为通用引物,采用终止物荧光标记(Big-Dye,Perkin-Elmer,USA)的方法,在ABI377测序仪(Perkin-Elmer,USA)上进行测序。测序结果通过在NCBI网站进行BLAST(http://blast.ncbi.nlm.nih.gov/)比对已有的数据库(GenBank),知其核酸序列及编码蛋白与已知的百合(Liliumhybrida)苯丙氨酸解氨酶的同源性很高,故初步认为它是一个苯丙氨酸解氨酶。The extracted RNA was reverse-transcribed (Prime Script II 1st Strand cDNA Synthesis Kit: Treasure Bioengineering (Dalian) Co., Ltd.), using the first-strand cDNA as a template, using primer TfPAL-F (5'-AACACCAYCCWGGYCARATT-3') (sequence as shown in SEQ ID NO.3) and TfPAL-R (5'-GAGCAGTAWGAYGCCATK-3') (sequence as shown in SEQ ID NO.4) for PCR to amplify the middle fragment, recovery and connection to pMD18- On the T vector vector, use RV-M and M13-47 as universal primers, and use the method of terminator fluorescent labeling (Big-Dye, Perkin-Elmer, USA) to perform sequencing on the ABI377 sequencer (Perkin-Elmer, USA) . The sequencing results were compared with the existing database (GenBank) by BLAST (http://blast.ncbi.nlm.nih.gov/) on the NCBI website, and its nucleic acid sequence and encoded protein were known to be consistent with the known lily (Lilium hybrida) benzene The homology of alanine ammonia lyase is very high, so it is preliminarily considered to be a phenylalanine ammonia lyase.
(2)3’RACE(2) 3' RACE
3’端的序列通过使用试剂盒3’-Full RACE Core Set Ver.2.0(宝生物工程(大连)有限公司)进行巢式PCR扩增获得。第一轮PCR上游引物为TfPAL31(5’-AAGGTGCTGACAACAGGTGCTAACG-3’)(序列如SEQ ID NO.5所示),下游引物为试剂盒提供的Outer primer,以第一轮PCR产物稀释50倍,取1μl作为模板进行第2轮PCR。第2轮PCR的上游引物为TfPAL32(5’-CGGGGAGAAGGAAAAGGATGTGAGT-3’)(序列如SEQID NO.6所示),下游引物为试剂盒提供的inner primer。The sequence at the 3' end was obtained by nested PCR amplification using the kit 3'-Full RACE Core Set Ver.2.0 (Bao Bioengineering (Dalian) Co., Ltd.). The upstream primer of the first round of PCR is TfPAL31 (5'-AAGGTGCTGACAACAGGTGCTAACG-3') (sequence shown in SEQ ID NO.5), and the downstream primer is the Outer primer provided by the kit, which is diluted 50 times with the first round of PCR products, and taken 1 μl was used as a template for the second round of PCR. The upstream primer of the second round of PCR was TfPAL32 (5'-CGGGGAGAAGGAAAAGGATGTGAGT-3') (sequence shown in SEQ ID NO.6), and the downstream primer was the inner primer provided by the kit.
将3’RACE得到TfPAL的3’末端序列回收,连接到pMD18-T vector载体上,以RV-M和M13-47为引物,送上海Invitrogen公司进行测序。测序结果通过在NCBI网站进行BLAST(http://blast.ncbi.nlm.nih.gov/)比对已有的数据库(GenBank),知其核酸序列及编码蛋白与已知的百合(Lilium hybrida)苯丙氨酸解氨酶的同源性高。The 3' end sequence of TfPAL obtained by 3'RACE was recovered, connected to the pMD18-T vector vector, and RV-M and M13-47 were used as primers, and sent to Shanghai Invitrogen Company for sequencing. The sequencing results were compared with the existing database (GenBank) by BLAST (http://blast.ncbi.nlm.nih.gov/) on the NCBI website, and its nucleic acid sequence and encoded protein were known to be similar to those of the known lily (Lilium hybrida) The homology of phenylalanine ammonia lyase is high.
(3)5’RACE(3) 5' RACE
5’端的序列通过使用SMARTerTMRACE cDNA Amplification Kit获得,以5’RACEready cDNA为模板,通过进行巢式PCR扩增获得。第一轮PCR上游引物为试剂盒提供的UPM,下游引物为TfPAL51(5’-AGCCCTGACCCAACAGCAGTGCCATTTA-3’)(序列如SEQID NO.7所示),以第一轮PCR产物为模板进行第2轮PCR。第2轮PCR的上游引物为试剂盒提供的NUP,下游引物为TfPAL52(5’-TTGGTGTTGAGGAGACTGGTGATGGCTT-3’)(序列如SEQ ID NO.8所示)将5’RACE扩增获得TfPAL的5’末端序列进行回收、连接、测序。测序结果通过在NCBI网站进行BLAST(http://blast.ncbi.nlm.nih.gov/)比对已有的数据库(GenBank),知其核酸序列及编码蛋白与已知的百合(Lilium hybrida)苯丙氨酸解氨酶的同源性高。The sequence at the 5' end was obtained by using the SMARTer TM RACE cDNA Amplification Kit, and the 5' RACEready cDNA was used as a template for nested PCR amplification. The upstream primer of the first round of PCR is the UPM provided by the kit, and the downstream primer is TfPAL51 (5'-AGCCCTGACCCAACAGCAGTGCCATTTA-3') (sequence shown in SEQID NO.7), and the second round of PCR is carried out using the first round of PCR product as a template . The upstream primer of the second round of PCR is the NUP provided by the kit, and the downstream primer is TfPAL52 (5'-TTGGTGTTGAGGAGACTGGTGATGGCTT-3') (sequence shown in SEQ ID NO.8) to amplify the 5' RACE to obtain the 5' end of TfPAL Sequences were recovered, ligated, and sequenced. The sequencing results were compared with the existing database (GenBank) by BLAST (http://blast.ncbi.nlm.nih.gov/) on the NCBI website, and its nucleic acid sequence and encoded protein were known to be similar to those of the known lily (Lilium hybrida) The homology of phenylalanine ammonia lyase is high.
将通过上述3种方法获得的序列的测序结果进行拼接,将拼接序列提交BLAST分析,结果证明从郁金香中新得到的TfPAL基因确为一个与苯丙氨酸解氨酶相关的基因。将测序结果结合NCBI的ORF Finding(http://www.ncbi.nlm.nih.gov/gorf)预测,发现了郁金香TfPAL基因的起始密码子与终止密码子,根据获得的序列,分别从起始密码子和终止密码子处设计特异性引物ORF-F(5’-ATGGAGCAGAACGGCAATGGAGTCG_-3’)(序列如SEQ ID NO.9所示),ORF-R(5’-TTAGCTGATTGGAAGAGGAGCACC-3’)(序列如SEQ IDNO.10所示),以郁金香cDNA为模板进行PCR,扩增得到2136bp郁金香TfPAL蛋白的全长编码基因序列(SEQ ID NO.1)。The sequencing results of the sequences obtained by the above three methods were spliced, and the spliced sequences were submitted to BLAST analysis. The results proved that the TfPAL gene newly obtained from tulip was indeed a gene related to phenylalanine ammonia-lyase. Combining the sequencing results with NCBI's ORF Finding (http://www.ncbi.nlm.nih.gov/gorf) prediction, the start codon and stop codon of the tulip TfPAL gene were found. Specific primers ORF-F (5'-ATGGAGCAGAACGGCAATGGAGTCG-3') (sequence shown in SEQ ID NO.9), ORF-R (5'-TTAGCTGATTGGAAGAGGAGCACC-3') (sequence As shown in SEQ ID NO.10), with tulip cDNA as a template to carry out PCR, amplified to obtain the full-length coding gene sequence (SEQ ID NO.1) of 2136bp tulip TfPAL protein.
实施例2、郁金香TfPAL基因的序列信息与同源性分析Example 2, Sequence Information and Homology Analysis of Tulip TfPAL Gene
郁金香TfPAL全长CDS开放读码框序列为2136bp,详细序列见SEQ ID NO.1所示序列;根据CDS开放读码框序列推导出郁金香TfPAL的氨基酸序列,共711个氨基酸残基,分子量为77098.9道尔顿,等电点(pI)为6.20,详细序列见SEQ ID NO.2所示序列。The full-length CDS open reading frame sequence of tulip TfPAL is 2136bp, and the detailed sequence is shown in SEQ ID NO.1; the amino acid sequence of tulip TfPAL is deduced according to the CDS open reading frame sequence, with a total of 711 amino acid residues and a molecular weight of 77098.9 Dalton, the isoelectric point (pI) is 6.20, the detailed sequence is shown in the sequence shown in SEQ ID NO.2.
将郁金香TfPAL的CDS开放读码框序列及其编码蛋白的氨基酸序列用BLAST程序在Non-redundant GenBank+EMBL+DDBJ+PDB和Non-redundant GenBank CDStranslations+PDB+SwissProt+Superdate+PIR数据库中进行核苷酸和蛋白质同源性检索。表2为本发明的郁金香TfPAL基因与百合(Lilium hybrida)PAL基因mRNA的核苷酸序列的同源比较(GAP)结果;由表2可知,它与百合(Lilium hybrida)苯丙氨酸解氨酶(GenBank登陆号AB699156.1)在核苷酸水平上具有82%的相似性;表3为本发明的郁金香TfPAL基因与百合(Lilium hybrida)PAL基因mRNA的氨基酸序列的同源比较(FASTA)结果,其中,相同的氨基酸在两个序列之间用氨基酸单字符标出;由表3可知,在氨基酸水平上,它也与百合(Lilium hybrida)苯丙氨酸解氨酶(GenBank登陆号BAM28966.1)也有94%的一致性和89%的相似性;由表2和表3可知,郁金香TfPAL基因与百合(Lilium hybrida)苯丙氨酸解氨酶无论从核酸还是蛋白水平上都存在较高的同源性。The CDS open reading frame sequence of tulip TfPAL and the amino acid sequence of its encoded protein were analyzed by BLAST program in the databases of Non-redundant GenBank+EMBL+DDBJ+PDB and Non-redundant GenBank CDStranslations+PDB+SwissProt+Superdate+PIR Acid and protein homology searches. Table 2 is the homologous comparison (GAP) result of the nucleotide sequence of tulip TfPAL gene of the present invention and the nucleotide sequence of lily (Lilium hybrida) PAL gene mRNA; As can be seen from table 2, it and lily (Lilium hybrida) phenylalanine ammonia solution Enzyme (GenBank accession number AB699156.1) has 82% similarity at nucleotide level; Table 3 is the homologous comparison (FASTA) of the amino acid sequence of tulip TfPAL gene of the present invention and lily (Lilium hybrida) PAL gene mRNA As a result, wherein, the same amino acid is marked with an amino acid single character between the two sequences; as can be seen from Table 3, at the amino acid level, it is also related to lily (Lilium hybrida) phenylalanine ammonia lyase (GenBank accession number BAM28966 .1) also have 94% identity and 89% similarity; As can be seen from Table 2 and Table 3, tulip TfPAL gene and lily (Lilium hybrida) phenylalanine ammonia-lyase all exist comparatively no matter from nucleic acid or protein level high homology.
表2Table 2
表3table 3
实施例3、郁金香TFPAL基因在花朵不同发育阶段及在郁金香不同组织中的表达差Embodiment 3, Tulip TFPAL gene expression difference in different developmental stages of flowers and in different tissues of tulip 异性opposite sex
1.材料的获得1. Acquisition of materials
在郁金香花朵的4个不同发育阶段(花蕾,花瓣未着色;花蕾,花瓣开始着色;花朵部分开放,花瓣未完全着色;花朵完全开放,花瓣完全着色),于田间采取其球茎、地上茎、叶片以及花瓣(各着色阶段花瓣的混合样),将样品分别用铝铂纸包好后立刻投入液氮中,接着转入-80℃超低温冰箱中贮存待用。During the four different developmental stages of tulip flowers (buds, petals are not colored; buds, petals are beginning to color; flowers are partially open, petals are not fully colored; flowers are fully open, petals are fully colored), the bulbs, aboveground stems, leaves and For the petals (mixed samples of petals at each coloring stage), the samples were wrapped in aluminum platinum paper and immediately put into liquid nitrogen, and then transferred to a -80°C ultra-low temperature refrigerator for storage until use.
2.RNA的提取2. Extraction of RNA
利用RNA prep pure植物总RNA提取试剂盒(RNA prep pure Plant Kit:天根生化科技(北京)有限公司)提取郁金香不同发育阶段花朵的花瓣以及不同组织中的RNA。RNA prep pure plant total RNA extraction kit (RNA prep pure Plant Kit: Tiangen Biochemical Technology (Beijing) Co., Ltd.) was used to extract the petals of tulip flowers at different developmental stages and the RNA in different tissues.
3.RNA的完整性、纯度、浓度的确定3. Determination of the integrity, purity and concentration of RNA
用普通琼脂糖凝胶电泳(胶浓度1.2%;0.5×TBE电泳缓冲液;150v,15min)检测完整性;电泳条带中最大rRNA亮度应为第二条rRNA亮度的1.5-2.0倍,否则表示rRNA样品的降解。纯度较好的RNA,A260/A280以及A260/A230约为2.0左右;用分光光度计测定OD值并计算RNA含量。Use ordinary agarose gel electrophoresis (gel concentration 1.2%; 0.5×TBE electrophoresis buffer; 150v, 15min) to detect integrity; the maximum rRNA brightness in the electrophoresis band should be 1.5-2.0 times the brightness of the second rRNA, otherwise it means Degradation of rRNA samples. For RNA with good purity, A 260 /A 280 and A 260 /A 230 are about 2.0; use a spectrophotometer to measure the OD value and calculate the RNA content.
4.cDNA的获得4. Acquisition of cDNA
以500ng的总RNA为模板,按照宝生物公司TaKaRa PrimeScriptTMRT reagent KitPerfect Real Time试剂盒操作说明进行反转录获得cDNA备用。Using 500 ng of total RNA as a template, reverse transcription was performed according to the instructions of the TaKaRa PrimeScript TM RT reagent KitPerfect Real Time kit from Baobio Company to obtain cDNA for future use.
5.实时荧光定量PCR分析TfPAL基因在各器官与组织中的表达量5. Real-time fluorescent quantitative PCR analysis of the expression of TfPAL gene in various organs and tissues
根据已经获得的郁金香TFLS基因的序列,利用引物设计软件Primer premier 5.0设计用于Real-time PCR中郁金香TfPAL基因定量分析的特异性引物:TfPAL-qF(5’-AGTACGTATTTGCCTACGCCGA-3’)(序列如SEQ ID NO.11所示)和TfPAL-qR(5’-CTCACATCCTTTTCCTTCTCCC-3’)(序列如SEQ ID NO.12所示),内参基因为Actin(GenBank登陆号AB711684),其引物为Actin-F(5’-AGTCAGTCATACAGTGCCAATC-3’)(序列如SEQID NO.13所示),Actin-R(5’-TCATAAGAGAGTCGGTCAAATCC-3’)(序列如SEQ ID NO.14所示)。According to the sequence of tulip TFLS gene that has been obtained, utilize primer design software Primer premier 5.0 to design the specific primer that is used for the quantitative analysis of tulip TfPAL gene in Real-time PCR: TfPAL-qF (5'-AGTACGTATTTGCCTACGCCGA-3') (sequence such as Shown in SEQ ID NO.11) and TfPAL-qR (5'-CTCACATCCTTTTCCTTCTCCC-3') (sequence shown in SEQ ID NO.12), the internal reference gene is Actin (GenBank accession number AB711684), and its primer is Actin-F (5'-AGTCAGTCATACAGTGCCAATC-3') (sequence shown in SEQ ID NO.13), Actin-R (5'-TCATAAGAGAGTCGGTCAAATCC-3') (sequence shown in SEQ ID NO.14).
6.制作目的基因及内参基因的标准曲线6. Make the standard curve of target gene and internal reference gene
用EASY Dilution(试剂盒提供)将标准品cDNA溶液进行梯度稀释,然后分别以稀释后的cDNA溶液为模板,以目的基因及内参基因的特异性引物进行Real-time PCR扩增,反应结束后绘制溶解曲线和标准曲线;分析溶解曲线,判断目的基因及内参基因的溶解曲线是否得到单一峰,以判断使用该引物能否得到单一的PCR扩增产物;通过标准曲线确定模板cDNA的合适稀释倍数。Use EASY Dilution (provided by the kit) to serially dilute the standard cDNA solution, then use the diluted cDNA solution as a template to perform Real-time PCR amplification with specific primers for the target gene and the internal reference gene, and draw after the reaction Melting curve and standard curve; analyze the melting curve to determine whether the melting curve of the target gene and the internal reference gene has a single peak, so as to determine whether a single PCR amplification product can be obtained by using the primer; determine the appropriate dilution factor of the template cDNA through the standard curve.
7.待测样品中目的基因的实时荧光定量分析7. Real-time fluorescence quantitative analysis of the target gene in the sample to be tested
以合成的cDNA第一条链为模板,分别用目的基因与内参照基因的特异性引物扩增进行荧光定量分析,Real-time PCR反应在BIO-RAD Chromo 4实时定量仪上进行,反应体系为20μL,反应采用三步法,94℃ 变性20s,接着41个循环:94℃ 15s;60℃ 25s;72℃ 20s;每次扩增完成后,均做溶解曲线,以检验扩增产物是否为特异产生。Using the first strand of the synthesized cDNA as a template, the target gene and the internal reference gene were respectively amplified with specific primers for fluorescence quantitative analysis. The Real-time PCR reaction was carried out on the BIO-RAD Chromo 4 real-time quantitative instrument. The reaction system was 20μL, the reaction adopts a three-step method, denaturation at 94°C for 20s, followed by 41 cycles: 94°C for 15s; 60°C for 25s; 72°C for 20s; produce.
采用2-ΔΔCt法作相对定量分析,结果表明TfPAL基因的表达水平随着花朵的发育而不断上升。在最后一个发育阶段的表达量为第一阶段表达量的11.2倍,与花色苷的积累呈现相同的趋势,表明TfPAL与花色苷的合成正相关。TfPAL基因在球茎、地上茎、叶、花瓣中均有表达,在花朵中表达量最高,其次为地上茎,在球茎中的表达量最低。在花瓣中的表达量为分别为在地上茎、叶片、球茎中表达量的1.6、2.3、2.6倍,这说明TfPAL基因的表达具有一定的组织特异性。Using 2 -ΔΔCt method for relative quantitative analysis, the results showed that the expression level of TfPAL gene increased with the development of flowers. The expression level in the last developmental stage was 11.2 times that of the first stage, showing the same trend as the accumulation of anthocyanins, indicating that TfPAL was positively correlated with the synthesis of anthocyanins. TfPAL gene was expressed in bulbs, aerial stems, leaves, and petals, with the highest expression level in flowers, followed by aerial stems, and the lowest expression level in bulbs. The expression levels in petals were 1.6, 2.3, and 2.6 times higher than those in aboveground stems, leaves, and bulbs, which indicated that the expression of TfPAL gene had certain tissue specificity.
以上对本发明的具体实施例进行了描述。需要理解的是,本发明并不局限于上述特定实施方式,本领域技术人员可以在权利要求的范围内做出各种变形或修改,这并不影响本发明的实质内容。Specific embodiments of the present invention have been described above. It should be understood that the present invention is not limited to the specific embodiments described above, and those skilled in the art may make various changes or modifications within the scope of the claims, which do not affect the essence of the present invention.
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