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CN102703442A - Bio-barcode for detecting canine parvovirus and application thereof - Google Patents

Bio-barcode for detecting canine parvovirus and application thereof Download PDF

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CN102703442A
CN102703442A CN2012101410127A CN201210141012A CN102703442A CN 102703442 A CN102703442 A CN 102703442A CN 2012101410127 A CN2012101410127 A CN 2012101410127A CN 201210141012 A CN201210141012 A CN 201210141012A CN 102703442 A CN102703442 A CN 102703442A
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barcode
probe
canine parvovirus
detection
biological
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史利军
宫苗苗
袁维峰
金红岩
李刚
朱鸿飞
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Institute of Animal Science of CAAS
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Abstract

The invention provides a bio-barcode for detecting canine parvovirus and a complentary NP (nanoparticle) probe chain used with the bio-barcode. The complentary NP probe chain has nucleotide sequences respectively shown as SEQ ID No.1 and SEQ ID No.2. The invention further provides a method and an assay kit for fluorescent quantitative detection of the bio-barcode for canine parvovirus. The method has the advantages of accurate detection, high sensibility, high specificity, simplicity, convenience and quickness, and has excellent specimen detectability.

Description

一种检测犬细小病毒的生物条形码及其应用A biological barcode for detecting canine parvovirus and its application

技术领域 technical field

本发明涉及条形码检测方法,特别是涉及用于检测犬细小病毒的生物条形码检测技术所用的引物、探针及其荧光定量PCR检测试剂盒的组装。The invention relates to a barcode detection method, in particular to the assembly of primers, probes and fluorescent quantitative PCR detection kits used in the biological barcode detection technology for detecting canine parvovirus.

背景技术 Background technique

生物条形码检测技术(bio-bar codes assay,BCA)是美国西北大学Mirkin教授于2003年首次报道的一种新型标记免疫测定技术,其突出特点是具有极高的灵敏度,可达常规ELISA方法的106倍。BCA技术的基本原理是利用被检物单抗标记的磁性微球探针(magnetic microparticles,MMPs)和被检物多抗及特异DNA双链标记的金纳米颗粒探针(nanoparticle,NP),通过形成MMP-被检物-NP三明治复合物后再利用去杂交将NP探针上标记的特异DNA链释放出来,通过常规PCR方法或芯片检测方法(金标银染法)鉴定这些释放的DNA链就可确定被检物的存在。Bio-bar codes assay (BCA) is a new type of marker immunoassay technology first reported by Professor Mirkin of Northwestern University in 2003. Its outstanding feature is that it has extremely high sensitivity, which can reach 106 of the conventional ELISA method. times. The basic principle of BCA technology is to use the magnetic microsphere probe (magnetic microparticles, MMPs) labeled with the monoclonal antibody of the object and the gold nanoparticle probe (nanoparticle, NP) labeled with the polyclonal antibody of the object and specific DNA double strands. After forming the MMP-analyte-NP sandwich complex, dehybridization is used to release the specific DNA strands marked on the NP probe, and these released DNA strands are identified by conventional PCR methods or chip detection methods (gold standard silver staining method) The presence of the detected object can be confirmed.

NP探针即是金纳米颗粒包被有双链DNA和抗被检物的多克隆抗体,双链DNA其中的一条和胶体金颗粒通过Au-S键相连,另一条和前者互补是用来指示被检物的条形码DNA;MMP探针即是对应于分选磁场的直径约为1μm的磁性微球探针,其表面包被有抗被检物的单克隆抗体。NP probes are gold nanoparticles coated with double-stranded DNA and polyclonal antibodies against the object to be tested. One of the double-stranded DNA is connected to the colloidal gold particle through the Au-S bond, and the other is complementary to the former to indicate The barcode DNA of the object to be tested; the MMP probe is a magnetic microsphere probe with a diameter of about 1 μm corresponding to the sorting magnetic field, and its surface is coated with a monoclonal antibody against the object to be tested.

从BCA技术的检测程序可以看出,其基本原理类似于双抗体夹心ELISA抗原检测法。通过检测条形码DNA而实现对被检物的间接检测,由于PCR反应和芯片检测的放大效应,使检测灵敏度得到极大提高。It can be seen from the detection procedure of BCA technology that its basic principle is similar to the double antibody sandwich ELISA antigen detection method. The indirect detection of the detected object is realized by detecting the barcode DNA, and the detection sensitivity is greatly improved due to the amplification effect of the PCR reaction and chip detection.

生物条形码检测过程可以分为条形码DNA的获取和条形码DNA的检测两大方面。条形码DNA的获取过程包括三步,第一步:抗原抗体作用,先用抗被检物的单抗功能化的MMP探针特异性地结合标本中可能的被检物,加上磁场固定MMP探针,用PBS溶液反复冲洗,除去未连结的被检物和不相关的杂质;第二步:洗脱和去杂交,加入被双链DNA和抗被检物的多抗修饰的NP探针,将被检物夹在中间,形成一个三明治结构,接着加上磁场,用磁铁固定MMP探针的同时,反复冲洗,除去未连接的NP探针;第三步:DNA分离,此步是一个去杂交步骤,三明治结构被磁场固定,在高温低盐条件下,NP探针上结合的数以百计的条形码DNA释放到溶液中,接着对条形码DNA链进行定量,从而间接检测被检物。条形码DNA链的检测现在有两种方式:一是对获取的条形码DNA链作普通的PCR扩增,然后凝胶电泳检测;二是通过芯片检测,芯片检测系统需要三种不同作用的核酸:1)与固相支持物(玻片等)连接的捕获探针(捕获DNA修饰的玻片);2)产生信号的检测探针(DNA修饰的胶体金);3)靶核酸(条形码DNA),靶核酸在这个体系中起连接捕获探针和信号检测探针的作用。如体系中存在上述三种成分,靶核酸能与上述两种核苷酸杂交,洗脱去除杂质后能得到一个清晰的检测信号,如果靶核酸不与上述两种探针杂交,则信号探针无法连接在固相物上,洗脱后固相物上无信号应答,得到的信号可以用普通的平板扫描仪进行分析。The biological barcode detection process can be divided into two aspects: the acquisition of barcode DNA and the detection of barcode DNA. The acquisition process of barcode DNA includes three steps. The first step is the interaction of antigen and antibody. First, the MMP probe functionalized with monoclonal antibody against the object to be detected specifically binds to the possible object in the sample, and then the MMP probe is immobilized by a magnetic field. The needle is washed repeatedly with PBS solution to remove unbound analytes and irrelevant impurities; the second step: elution and dehybridization, adding NP probes modified by double-stranded DNA and polyclonal antibodies against analytes, Sandwich the object to be tested to form a sandwich structure, then apply a magnetic field, fix the MMP probe with a magnet, and wash repeatedly to remove unconnected NP probes; the third step: DNA separation, this step is a step to remove In the hybridization step, the sandwich structure is fixed by a magnetic field. Under high temperature and low salt conditions, hundreds of barcode DNA bound to the NP probe is released into the solution, and then the barcode DNA chain is quantified to indirectly detect the analyte. There are currently two ways to detect the barcode DNA chain: one is to perform ordinary PCR amplification on the obtained barcode DNA chain, and then detect it by gel electrophoresis; the other is to detect it through a chip. The chip detection system requires three kinds of nucleic acids with different functions: 1. ) a capture probe (slide that captures DNA modification) attached to a solid support (slide, etc.); 2) a detection probe that generates a signal (DNA-modified colloidal gold); 3) a target nucleic acid (barcoded DNA), In this system the target nucleic acid acts as a link between the capture probe and the signal detection probe. If the above three components exist in the system, the target nucleic acid can hybridize with the above two nucleotides, and a clear detection signal can be obtained after elution to remove impurities. If the target nucleic acid does not hybridize with the above two probes, the signal probe It cannot be connected to the solid phase, and there is no signal response on the solid phase after elution, and the obtained signal can be analyzed with a common flatbed scanner.

BCA技术已在某些病原标志物的检测上取得了很好的进展。Nam等人首先利用BCA技术对前列腺特异抗原(prostate specificantigen,PSA)进行了检测,利用BCA技术检测PSA的检测下限可达3a mol/L,检测下限比现有的传统ELISA方法低6个数量级;Georganopoulou等人利用BCA技术对β-淀粉样蛋白源性播散性配基(amyloid β-derived diffusible ligands,ADDL)进行了检测,其检测极限能在15μL脑脊液中检测到50个ADDL分子;Stoeva等人利用BCA技术对血清中的三种肿瘤标志物PSA、人体绒毛膜促性腺激素(humanchorionic gonadotropin,HCG)和α胎儿球蛋白(α-fetoprotein,AFP)进行了联合检测,检测结果显示检测限度可达170fmol/L。BCA technology has made good progress in the detection of some pathogenic markers. Nam et al. first used BCA technology to detect prostate specific antigen (PSA). The detection limit of PSA using BCA technology can reach 3 a mol/L, which is 6 orders of magnitude lower than the existing traditional ELISA method; Georganopoulou et al. used BCA technology to detect amyloid β-derived diffusible ligands (ADDL), and its detection limit could detect 50 ADDL molecules in 15 μL of cerebrospinal fluid; Stoeva et al. BCA technology was used to jointly detect three tumor markers PSA, human chorionic gonadotropin (HCG) and α-fetoprotein (AFP) in serum, and the detection results showed that the limit of detection was acceptable. Up to 170fmol/L.

综上所述,BCA技术与ELISA技术相比,具有非常显著的优点,具体表现在以下几个方面:1)BCA技术显示了比常规的ELISA方法高出六个数量级(100万倍)的敏感性;2)针对不同的被检物设计不同长度和序列的条形码DNA,可分析复杂样本中的多种物质;3)具有较高的特异性,其特异性决定于检测系统使用的单克隆抗体的特异性,只要使用高特异的抗目标检物的单克隆抗体就能保证检测系统的高特异性;4)检测范围广,只要被检物具有单抗和多抗,就可对其进行检测,这使得它在检测一些不适宜用PCR技术检测的微量物质方面具有很大的优势。In summary, compared with ELISA technology, BCA technology has very significant advantages, which are embodied in the following aspects: 1) BCA technology shows a sensitivity of six orders of magnitude (1,000,000 times) higher than conventional ELISA method 2) Design barcode DNA with different lengths and sequences for different tested objects, which can analyze multiple substances in complex samples; 3) High specificity, which depends on the monoclonal antibody used in the detection system The specificity of the detection system can be guaranteed as long as the monoclonal antibody with high specificity against the target object is used; 4) The detection range is wide, as long as the object has monoclonal antibody and polyantibody, it can be detected , which makes it a great advantage in detecting some trace substances that are not suitable for detection by PCR technology.

但是,从BCA技术检测的过程和显示体系可以看出,这种技术存在着明显的缺陷,主要体现在对条形码DNA的检测上,具体有:1)传统的PCR检测是应用终点PCR来定量样品中模板的量,通常用凝胶电泳分离,并用荧光染色来检测PCR反应的最终扩增产物。但在PCR反应中,由于模板、试剂、焦磷酸盐分子的聚集等因素影响聚合酶反应,最终导致PCR反应不再以指数形式进行而进入“平台期”,一些反应的终产物比另一些要多,因此终点PCR反应方法定量不准确;其次终点PCR容易交叉污染,产生假阳性;2)条形码DNA的芯片检测由于银染试剂自身的缺点而易产生假阳性,阴阳性不易界定,染色结果因时间、环境因素变化很大;3)PCR检测体系和芯片检测体系都不能对被检物进行有效定量,这与现今免疫检测技术的发展要求及发展方向:不但能定性,而且能定量相比是落伍的,因此对常规BCA技术进行改进使之能克服上述缺点并能对被检物确切定量就显得很重要。However, as can be seen from the detection process and display system of BCA technology, this technology has obvious defects, which are mainly reflected in the detection of barcode DNA, specifically: 1) traditional PCR detection is to use terminal PCR to quantify samples The amount of template in the medium is usually separated by gel electrophoresis and fluorescent staining is used to detect the final amplification product of the PCR reaction. However, in the PCR reaction, due to factors such as the aggregation of templates, reagents, and pyrophosphate molecules, the polymerase reaction is affected, and eventually the PCR reaction no longer proceeds exponentially and enters a "plateau stage", and the final products of some reactions are slower than others Therefore, the quantification of the end-point PCR reaction method is inaccurate; secondly, the end-point PCR is prone to cross-contamination and produces false positives; Time and environmental factors vary a lot; 3) Neither the PCR detection system nor the chip detection system can effectively quantify the detected object, which is compared with the development requirements and development direction of the current immune detection technology: not only qualitative, but also quantitative Outdated, so it is very important to improve the conventional BCA technology so that it can overcome the above shortcomings and can accurately quantify the analyte.

将BCA技术与实时荧光定量PCR(Real-time fluorescentquantitative PCR,FQ-PCR)技术结合,在分析优化关键数据基础上,建立荧光定量型生物条形码检测技术即可克服上述缺陷和不足。Combining BCA technology with real-time fluorescent quantitative PCR (Real-time fluorescent quantitative PCR, FQ-PCR) technology, based on the analysis and optimization of key data, the establishment of fluorescent quantitative biological barcode detection technology can overcome the above defects and deficiencies.

FQ-PCR技术创立于1996年,由美国Applied Biosystems公司推出,是一种在PCR定性技术基础上发展起来的核酸定量技术。FQ-PCR技术是通过在PCR反应体系中加入荧光基团,利用荧光信号的变化实时检测PCR扩增反应中每一个循环扩增产物量的变化,通过Ct值和标准曲线的分析对起始模板进行定量分析。FQ-PCR技术融合PCR技术和DNA探针杂交技术的优点,直接探测PCR过程中荧光信号的变化使PCR的扩增及其分析过程均在同一封闭系统下完成,并在电脑分析软件支持下实现对PCR扩增产物的动态监测和自动定量,其特点主要有以下几个方面:1)定量原理独特,用产生荧光信号的多少来显示扩增产物的量,动态实时连续荧光监测,具有很好的可视性;2)荧光信号通过荧光染料嵌入双链DNA,或双重标记的序列特异性荧光探针或能量信号转移探针等方法获得,大大地提高了检测的灵敏度、特异性和精确性;3)只须在加样时打开一次盖子,其后的过程完全是闭管操作,免除了标本和产物的污染,且无复杂的产物后续处理过程,高效、快速;4)结果重现性好,定量动态范围高达五个数量级。FQ-PCR作为PCR技术的发展,自1996年已来,在科研及临床诊断的许多领域显现出它的优越性,现在已广泛应用于生物学、基础医学、疾病诊断、食品、水质环保、药物开发等领域,被认为是核酸定量的金标准。FQ-PCR technology was founded in 1996 and launched by Applied Biosystems in the United States. It is a nucleic acid quantitative technology developed on the basis of PCR qualitative technology. FQ-PCR technology is to add a fluorescent group to the PCR reaction system, and use the change of the fluorescent signal to detect the change of the amount of the amplification product in each cycle of the PCR amplification reaction in real time. Perform quantitative analysis. FQ-PCR technology integrates the advantages of PCR technology and DNA probe hybridization technology, and directly detects the change of fluorescent signal during PCR, so that the PCR amplification and analysis process are completed under the same closed system, and realized with the support of computer analysis software The dynamic monitoring and automatic quantification of PCR amplification products have the following characteristics: 1) The quantitative principle is unique, and the amount of amplified products is displayed by the amount of fluorescent signal generated. Dynamic real-time continuous fluorescence monitoring has excellent 2) Fluorescent signals are obtained by embedding fluorescent dyes into double-stranded DNA, or double-labeled sequence-specific fluorescent probes or energy signal transfer probes, which greatly improve the sensitivity, specificity and accuracy of detection ;3) It is only necessary to open the lid once when adding samples, and the subsequent process is completely closed-tube operation, which avoids the contamination of samples and products, and there is no complicated subsequent processing of products, which is efficient and fast; 4) The reproducibility of results Well, the quantitative dynamic range is up to five orders of magnitude. As the development of PCR technology, FQ-PCR has shown its superiority in many fields of scientific research and clinical diagnosis since 1996. Now it has been widely used in biology, basic medicine, disease diagnosis, food, water quality environmental protection, medicine It is considered the gold standard for nucleic acid quantification.

犬细小病毒(Canine Parvovirus,CPV)可引起犬细小病毒病,是犬的一种高度接触性的烈性传染病,临床症状以出血性肠炎或非化脓性心肌炎为主要特征,是当前危害我国养犬业最严重的疫病之一。CPV属于细小病毒科,细小病毒属,线状负链单股DNA病毒,基因组长5323bp,编码结构蛋白VP1、VP2和VP3和非结构蛋白NS1、NS2。VP2是CPV的主要衣壳蛋白,编码CPV的主要抗原决定簇,可以诱导机体产生中和抗体,也被认为是受体的结合蛋白。VP2在病毒感染过程中起着极为重要的作用,CPV宿主范围由其结合细胞表面的受体或其他细胞配体的能力决定。VP2是病毒核心颗粒上的主要暴露蛋白,提示VP2可作为利用抗体检测犬细小病毒的理想靶位。Canine parvovirus (Canine Parvovirus, CPV) can cause canine parvovirus disease, which is a highly contagious infectious disease of dogs. The clinical symptoms are mainly characterized by hemorrhagic enteritis or non-suppurative myocarditis. one of the most serious diseases in the industry. CPV belongs to the family Parvoviridae, the genus Parvovirus, a linear negative-sense single-stranded DNA virus with a genome length of 5323bp, encoding structural proteins VP1, VP2 and VP3 and non-structural proteins NS1 and NS2. VP2 is the main capsid protein of CPV, which encodes the main antigenic determinant of CPV, can induce the body to produce neutralizing antibodies, and is also considered as a receptor binding protein. VP2 plays an extremely important role in the process of virus infection, and the host range of CPV is determined by its ability to bind to receptors on the cell surface or other cellular ligands. VP2 is the main exposed protein on the virus core particle, suggesting that VP2 can be used as an ideal target for antibody detection of canine parvovirus.

发明内容 Contents of the invention

本发明的目的在于提供用于检测犬细小病毒的生物条形码及其应用。The object of the present invention is to provide a biological barcode for detecting canine parvovirus and its application.

本发明的另一目的在于提供一种荧光定量型生物条形码检测技术。Another object of the present invention is to provide a fluorescent quantitative biological barcode detection technology.

本发明提供的一种用于检测犬细小病毒(Canine Parvovirus,CPV)的生物条形码,其具有SEQ ID No.1所示的核苷酸序列或其特异性片段。The invention provides a biological barcode for detecting canine parvovirus (Canine Parvovirus, CPV), which has the nucleotide sequence shown in SEQ ID No.1 or a specific fragment thereof.

本发明提供了用于扩增上述生物条形码的特异性引物,其核苷酸序列为:The present invention provides specific primers for amplifying the above-mentioned biological barcodes, the nucleotide sequence of which is:

引物1:5’-CTTACACTGTTGCTGCTGCC-3’(SEQ ID No.3),Primer 1: 5'-CTTACACTGTTGCTGCTGCC-3' (SEQ ID No.3),

引物2:5’-TCCTCTACTTCGGGTGGGAA-3’(SEQ ID No.4)。Primer 2: 5'-TCCTCTACTTCGGGTGGGAA-3' (SEQ ID No.4).

本发明提供了与上述生物条形码配合使用的互补探针NP链,其核苷酸序列为:The present invention provides a complementary probe NP chain used in conjunction with the above-mentioned biological barcode, its nucleotide sequence is:

5’-TCCTCTACTTCGGGTGGGAAGTCGGGGTTCA10-(CH2)6-SH-3’(SEQ ID No.2)。5'-TCCTCTACTTCGGGTGGGAAGTCGGGGTTCA 10 -(CH 2 ) 6 -SH-3' (SEQ ID No. 2).

本发明提供了一种犬细小病毒的生物条形码检测方法,包括以下步骤,The invention provides a biological barcode detection method for canine parvovirus, comprising the following steps,

1)NP探针的制备:用常规方法将金纳米颗粒、抗VP2蛋白的多克隆抗体、核苷酸序列为SEQ ID No.1的条形码DNA链和核苷酸序列为SEQ ID No.2的互补探针NP链制备NP探针;1) Preparation of NP probe: Gold nanoparticles, anti-VP2 protein polyclonal antibody, nucleotide sequence are barcode DNA chain of SEQ ID No.1 and nucleotide sequence is SEQ ID No.2 by conventional method Complementary probe NP strands prepare NP probes;

2)MMP探针的制备:用磁性微球和抗VP2蛋白的单克隆抗体制备MMP探针;2) Preparation of MMP probes: MMP probes were prepared with magnetic microspheres and anti-VP2 protein monoclonal antibodies;

3)犬细小病毒的生物条形码检测:利用NP探针、MMP探针和犬细小病毒通过抗原、抗体作用制备NP-VP2-MMP三明治复合物,然后在高温低盐条件下,释放条形码DNA链,最后对获得的条形码DNA链进行荧光定量PCR方法检测。3) Biological barcode detection of canine parvovirus: use NP probe, MMP probe and canine parvovirus to prepare NP-VP2-MMP sandwich complex through the action of antigen and antibody, and then release the barcode DNA chain under high temperature and low salt conditions, Finally, the fluorescent quantitative PCR method was used to detect the obtained barcode DNA chain.

其中,步骤1)所述的金纳米颗粒直径为30nm。Wherein, the diameter of the gold nanoparticles described in step 1) is 30nm.

其中,步骤2)所述的磁性微球直径为1μm。Wherein, the diameter of the magnetic microspheres described in step 2) is 1 μm.

其中所述荧光定量PCR方法所用引物分别如SEQ ID No.3和SEQ ID No.4所述的核苷酸序列。The primers used in the fluorescent quantitative PCR method are as described in SEQ ID No.3 and SEQ ID No.4 respectively.

本发明还提供一种犬细小病毒的生物条形码检测试剂盒,包括包被有抗VP2蛋白的单克隆抗体的MMP探针和抗VP2蛋白的多克隆抗体的NP探针。The invention also provides a biological barcode detection kit for canine parvovirus, which includes the MMP probe coated with the monoclonal antibody against VP2 protein and the NP probe coated with the polyclonal antibody against VP2 protein.

进一步的,上述试剂盒的NP探针连接的条形码DNA链具有SEQ ID No.1所示的核苷酸序列,互补探针NP链具有SEQ ID No.2所示的核苷酸序列。Further, the barcode DNA chain connected by the NP probe of the above kit has the nucleotide sequence shown in SEQ ID No.1, and the NP chain of the complementary probe has the nucleotide sequence shown in SEQ ID No.2.

进一步的,上述试剂盒还包括一对引物,其核苷酸序列分别如SEQ ID No.3和SEQ ID No.4所示。Further, the above kit also includes a pair of primers, the nucleotide sequences of which are shown in SEQ ID No.3 and SEQ ID No.4 respectively.

本发明利用荧光定量PCR技术代替普通PCR检测和芯片检测,从而实现对被检物进行精确定量。本发明建立的荧光定量型生物条形码检测技术与常规生物条形码检测方法相比,能对条形码DNA链进行精确定量,从而对犬细小病毒抗原进行精确定量,克服了常规生物条形码检测方法的阴阳性界限不清等问题。本发明的检测方法及检测试剂盒具有检测准确,灵敏度高、特异性强,简便快速的优点,具有良好的标本检测能力。The invention uses fluorescent quantitative PCR technology to replace ordinary PCR detection and chip detection, thereby realizing accurate quantification of the detected object. Compared with the conventional biological barcode detection method, the fluorescent quantitative biological barcode detection technology established by the present invention can accurately quantify the barcode DNA chain, thereby accurately quantifying the canine parvovirus antigen, overcoming the negative and positive limits of the conventional biological barcode detection method Unclear and other issues. The detection method and the detection kit of the present invention have the advantages of accurate detection, high sensitivity, strong specificity, simplicity and speed, and good specimen detection ability.

附图说明 Description of drawings

图1为荧光定量型生物条形码技术检测CPV VP2蛋白的灵敏度图,从左至右VP2蛋白浓度依次为:1:1pg/mL;2:100fg/mL;3:10fg/mL;4:1fg/mL;5:100ag/mL。Figure 1 is the sensitivity diagram of the detection of CPV VP2 protein by fluorescent quantitative biological barcoding technology. The concentration of VP2 protein from left to right is as follows: 1: 1pg/mL; 2: 100fg/mL; 3: 10fg/mL; 4: 1fg/mL ; 5: 100ag/mL.

图2为荧光定量型生物条形码技术的灵敏度检测结果(犬细小病毒)从左至右犬细小病毒滴度依次为:1:10-1TCID50/0.1mL;2:10-2TCID50/0.1mL;3:10-3TCID50/0.1mL;4:10-4TCID50/0.1mL;5:10-5TCID50/0.1mL。Figure 2 shows the sensitivity detection results of fluorescent quantitative biological barcoding technology (canine parvovirus). The titers of canine parvovirus from left to right are: 1:10 -1 TCID 50 /0.1mL; 2:10 -2 TCID 50 /0.1 mL; 3: 10 -3 TCID 50 /0.1 mL; 4: 10 -4 TCID 50 /0.1 mL; 5: 10 -5 TCID 50 /0.1 mL.

具体实施方式 Detailed ways

以下实施例进一步说明本发明的内容,但不应理解为对本发明的限制。在不背离本发明精神和实质的情况下,对本发明方法、步骤或条件所作的修改或替换,均属于本发明的范围。The following examples further illustrate the content of the present invention, but should not be construed as limiting the present invention. Without departing from the spirit and essence of the present invention, any modifications or substitutions made to the methods, steps or conditions of the present invention fall within the scope of the present invention.

若未特别指明,实施例中所用的技术手段为本领域技术人员所熟知的常规手段。若未特别指明,实施例中所用的试剂为市售。Unless otherwise specified, the technical means used in the embodiments are conventional means well known to those skilled in the art. Unless otherwise specified, the reagents used in the examples are commercially available.

实施例1检测犬细小病毒的生物条形码的设计与合成Example 1 Design and Synthesis of Biological Barcodes for Detecting Canine Parvovirus

本发明检测方法中使用的寡核苷酸链如下:The oligonucleotide chain used in the detection method of the present invention is as follows:

条形码DNA链:Barcoded DNA strands:

5′-ACACTGTTGCTGCTGCCTCTACGTTCAATGGCTTCCAGAGGCCGACGATCTACTATGTGATGTCAGGGCCTGCGTGGCAACTCATGCAGCAATTCCAGAACCCCGACTTCCCACCCGAAGTAGAGGA-3′(SEQ ID No.1);5′-ACACTGTTGCTGCTGCCTCTACGTTCAATGGCTTCCAGAGGCCGACGATCTACTATGTGATGTCAGGGCCTGCGTGGCAACTCATGCAGCAATTCCAGAACCCCGACTTCCCACCCGAAGTAGAGGA-3′ (SEQ ID No. 1);

互补探针NP链:Complementary probe NP strand:

5’-TCCTCTACTTCGGGTGGGAAGTCGGGGTTCA10-(CH2)6-SH-3’(SEQ ID No.2)。5'-TCCTCTACTTCGGGTGGGAAGTCGGGGTTCA 10 -(CH 2 ) 6 -SH-3' (SEQ ID No. 2).

以上条形码DNA由北京三博远志生物公司合成,互补探针NP链由大连宝生物工程有限公司合成。The above barcode DNA was synthesized by Beijing Sanbo Polygala Biological Company, and the complementary probe NP chain was synthesized by Dalian Bao Biological Engineering Co., Ltd.

实施例2犬细小病毒的生物条形码检测方法的建立The establishment of the biological barcode detection method of embodiment 2 canine parvovirus

1、金纳米颗粒的制备1. Preparation of gold nanoparticles

本实施例选择使用直径30nm的金纳米颗粒。采用柠檬酸钠还原法制备金纳米颗粒。In this embodiment, gold nanoparticles with a diameter of 30 nm are selected. Gold nanoparticles were prepared by sodium citrate reduction method.

取500mL 0.01%HAuCl4溶液在搅动的情况下加热至沸腾后迅速准确加入7.5mL的1%柠檬酸三钠水溶液,继续加热煮沸15min,整个过程始终用磁力搅拌器进行搅拌;当溶液的颜色渐渐加深,最后为深紫红色,停止加热;将制备好的纳米金用0.45μm的尼龙膜过滤,冷却至室温,放置于4℃避光保存。Take 500mL of 0.01% HAuCl4 solution, heat it to boiling while stirring, then quickly and accurately add 7.5mL of 1% trisodium citrate aqueous solution, continue heating and boiling for 15min, and stir with a magnetic stirrer throughout the whole process; when the color of the solution gradually deepens , and finally dark purple, stop heating; filter the prepared gold nanoparticles with a 0.45 μm nylon membrane, cool to room temperature, and store at 4°C in the dark.

2、犬细小病毒多抗的制备2. Preparation of polyclonal antibody against canine parvovirus

利用纯化的犬细小病毒,所用毒株CPV-2a为本实验室分离并鉴定,免疫新西兰大白兔(购于北京维通利华实验动物技术有限公司)制备抗犬细小病毒多克隆抗体。Using purified canine parvovirus, the strain CPV-2a used was isolated and identified by our laboratory, and New Zealand white rabbits (purchased from Beijing Weitong Lihua Experimental Animal Technology Co., Ltd.) were immunized to prepare polyclonal antibodies against canine parvovirus.

每只雄性新西兰大白兔免疫前,都由耳缘静脉取血2mL,静置分离血清,-20℃保存,以作为阴性对照用。首次免疫,每只家兔注射2mL的乳化抗原,于足掌及肘窝淋巴结周围,背部两侧、颈下、耳后等处皮下多点注射,对照兔子注射等量生理盐水。2周后以同样的剂量(含等体积弗氏不完全佐剂)加强免疫,背部多点注射,2周后再次加强免疫。10天后进行第3次加强免疫,约10天以后进行末次免疫,直接用2mL乳化抗原静脉注射。每次加强免疫后7~10天从兔耳缘静脉采血2~3mL,用间接ELISA法检测抗体效价,末次免疫后7天即用颈动脉放血法采血,4℃静置过夜,次日4000rpm离心10min,收集上清,分装后-20℃保存。Before each male New Zealand white rabbit was immunized, 2 mL of blood was collected from the ear vein, left to stand to separate the serum, and stored at -20°C as a negative control. For the first immunization, each rabbit was injected with 2mL of emulsified antigen, subcutaneously injected at multiple points around the paws and cubital fossa lymph nodes, on both sides of the back, under the neck, behind the ears, etc., and the control rabbit was injected with the same amount of normal saline. Two weeks later, booster immunization with the same dose (containing equal volume of Freund's incomplete adjuvant), multi-point injection on the back, and booster immunization again 2 weeks later. The third booster immunization was carried out 10 days later, and the last immunization was carried out about 10 days later, and 2 mL of emulsified antigen was directly injected intravenously. 7 to 10 days after each booster immunization, 2 to 3 mL of blood was collected from the vein of the rabbit’s ear, and the antibody titer was detected by indirect ELISA. 7 days after the last immunization, blood was collected by carotid artery bleeding, left standing at 4°C overnight, and 4000 rpm the next day. Centrifuge for 10 min, collect the supernatant, and store at -20°C after aliquoting.

3、金纳米颗粒-犬细小病毒多抗复合物的制备3. Preparation of gold nanoparticles-canine parvovirus polyclonal antibody complex

分别取1mL的金纳米颗粒和适量的抗犬细小病毒多抗,用0.1mol/L K2CO3调节至pH9.0。在搅拌下将金纳米颗粒和抗体混合,10min后再加入一定量的稳定剂为5%BSA,使其最终浓度为1%;或加入1%聚乙二醇(PEG,分子量20kD)至标记物总量的1/10,以防止抗体蛋白和金纳米颗粒的聚合和发生沉淀。Take 1 mL of gold nanoparticles and an appropriate amount of anti-canine parvovirus polyclonal antibody, and adjust the pH to 9.0 with 0.1 mol/L K 2 CO 3 . Mix the gold nanoparticles and the antibody under stirring, and then add a certain amount of stabilizer 5% BSA after 10 minutes to make the final concentration 1%; or add 1% polyethylene glycol (PEG, molecular weight 20kD) to the marker 1/10 of the total amount to prevent aggregation and precipitation of antibody proteins and gold nanoparticles.

4、NP探针的制备4. Preparation of NP probes

将实施例1的互补探针NP链(终浓度为2μmol/L)加入被抗犬细小病毒多抗修饰的金纳米颗粒(浓度为4.5nmol/L)中,室温放置16小时;再以磷酸盐缓冲液调整pH至7.0,增强离子浓度至0.1mol/LNaCl,室温放置40小时,10,000g离心30min得到含互补探针NP链修饰的金纳米颗粒;得到的深红色沉淀用0.1M NaCl,10mM PBS(pH7.0)溶液洗涤3次,去除未标记的金纳米颗粒;将实施例1得到的条形码DNA链(终浓度为2μmol/L)加入上述标记有互补探针NP链修饰的金纳米颗粒中,室温杂交4小时,14,000g离心30分钟,得到NP探针。The complementary probe NP chain (final concentration is 2 μmol/L) of embodiment 1 is added in the gold nanoparticle (concentration is 4.5nmol/L) that is modified by anti-canine parvovirus polyclonal antibody, room temperature is placed 16 hours; Adjust the pH of the buffer to 7.0, increase the ion concentration to 0.1mol/LNaCl, place it at room temperature for 40 hours, and centrifuge at 10,000g for 30 minutes to obtain gold nanoparticles modified with complementary probe NP chains; (pH7.0) solution was washed 3 times to remove unlabeled gold nanoparticles; the barcode DNA chain obtained in Example 1 (final concentration of 2 μmol/L) was added to the above-mentioned gold nanoparticles marked with complementary probe NP chain modification , hybridized at room temperature for 4 hours, and centrifuged at 14,000 g for 30 minutes to obtain NP probes.

5、抗犬细小病毒单抗的制备5. Preparation of anti-canine parvovirus monoclonal antibody

利用纯化的CPV初次免疫、再次免疫、加强免疫Balb/c小鼠后取脾与SP20细胞融合制备杂交瘤细胞,用重组表达的VP2蛋白包被酶标板,通过有限稀释法克隆筛选阳性细胞株。鉴定的阳性杂交瘤细胞免疫BALB/c小鼠制备抗犬细小病毒单克隆抗体。Using purified CPV for primary immunization, re-immunization, and booster immunization of Balb/c mice, the spleen was taken and fused with SP20 cells to prepare hybridoma cells, and the recombinantly expressed VP2 protein was used to coat the microtiter plate, and the positive cell lines were cloned and screened by limiting dilution method . The identified positive hybridoma cells were immunized to BALB/c mice to prepare anti-canine parvovirus monoclonal antibody.

采用6-8周雌性Balb/c小鼠,在注射杂交瘤细胞前7天,预先腹腔注射0.5mL灭菌液体石蜡;每只鼠腹腔注射含1~5×106杂交瘤细胞的0.5mL的培养液;当小鼠产生腹水时(1~3周),腹部穿刺放出腹水(1~5mL),隔天穿刺直至小鼠死亡;3000rpm离心15min,除去腹水中的细胞;上清无菌储存或加0.01%叠氮钠置于-70℃冰箱保存备用。6-8 weeks old female Balb/c mice were used, and 0.5 mL of sterilized liquid paraffin was injected intraperitoneally 7 days before the injection of hybridoma cells; each mouse was intraperitoneally injected with 0.5 mL of culture medium; when the mice produce ascites (1-3 weeks), release the ascites (1-5mL) by abdominal puncture, and puncture the next day until the mice die; centrifuge at 3000rpm for 15min to remove the cells in the ascites; store the supernatant aseptically or Add 0.01% sodium azide and store in a -70°C refrigerator for later use.

6、MMP探针的制备6. Preparation of MMP probes

将100μg单抗溶于20mL PBS中,将其加入到激活的磁珠(Dynabeads M-280磁珠购于Invitrogen公司)中,剧烈振荡,然后将烧瓶置于混合器上反应16~24小时;磁性分离,扔掉上清;在40mL PBS中重悬磁珠;加入20mL淬灭剂(甘氨酸),剧烈振荡,将其放在混合器上反应30min;磁性分离,扔掉上清;用PBS洗3次,磁性分离;用50mL洗液重悬磁珠,4℃保存。Dissolve 100 μg of monoclonal antibody in 20 mL of PBS, add it to activated magnetic beads (Dynabeads M-280 magnetic beads are purchased from Invitrogen), shake vigorously, and then place the flask on a mixer for 16 to 24 hours of reaction; Separation, discard supernatant; resuspend magnetic beads in 40mL PBS; add 20mL quencher (glycine), shake vigorously, put it on the mixer for 30min reaction; magnetic separation, discard supernatant; wash with PBS for 3 Second, magnetic separation; resuspend the magnetic beads with 50mL washing solution, and store at 4°C.

7、检测探针的制备7. Preparation of detection probes

将探针NP链(互补探针链与条形码DNA链的杂交组合双链)(终浓度为2μmol/L)加入金纳米颗粒(浓度为4.5nmol/L)中,室温放置16小时;再以磷酸盐调整pH至7.0,增强离子浓度至0.1mol/LNaCl,室温放置40小时,10,000g离心30min得到检测探针;用0.3mol/L NaCl,10mmol/L pH7.0的PBS混悬,离心洗涤两次,最后用一定量的0.3mol/L的PBS溶解,即为检测探针。Add the probe NP chain (the double-stranded hybridization combination of the complementary probe chain and the barcode DNA chain) (final concentration: 2 μmol/L) into gold nanoparticles (concentration: 4.5 nmol/L), and place it at room temperature for 16 hours; Adjust the pH to 7.0 with salt, increase the ion concentration to 0.1mol/L NaCl, place at room temperature for 40 hours, and centrifuge at 10,000g for 30min to obtain the detection probe; suspend with 0.3mol/L NaCl, 10mmol/L PBS with pH7.0, and wash by centrifugation for two times, and finally dissolved with a certain amount of 0.3mol/L PBS, which is the detection probe.

8、犬细小病毒荧光定量型生物条形码检测方法的建立8. Establishment of a fluorescent quantitative biological barcode detection method for canine parvovirus

将50μL抗VP2抗原的单抗功能化的磁性微球(5mg/mL)加入10μL已知浓度的VP2蛋白和已知滴度的犬细小病毒中,37℃下剧烈震荡1小时;加上磁场固定MMP探针,用PBS溶液反复冲洗,除去未连结的VP2抗原和不相关的蛋白;加入被双链DNA和抗VP2蛋白的多抗修饰的0.1nmol/L金纳米颗粒探针50μL,剧烈震荡30分钟,形成三明治结构;加上磁场,在用磁铁固定MMPs的同时,用500μL的PBS缓冲液反复冲洗4次,除去未连接的NP探针。Add 50 μL of anti-VP2 antigen monoclonal antibody functionalized magnetic microspheres (5 mg/mL) to 10 μL of known concentration of VP2 protein and known titer of canine parvovirus, shake vigorously at 37°C for 1 hour; add magnetic field fixation Wash MMP probes repeatedly with PBS solution to remove unbound VP2 antigen and irrelevant proteins; add 50 μL of 0.1 nmol/L gold nanoparticle probe modified by double-stranded DNA and polyantibody against VP2 protein, and shake vigorously for 30 Minutes, a sandwich structure is formed; add a magnetic field, while immobilizing MMPs with a magnet, wash with 500 μL of PBS buffer repeatedly 4 times to remove unattached NP probes.

形成三明治结构后,接着加上磁场,在用磁铁固定MMPs的同时,用500μL的PBS缓冲液反复冲洗4次,除去未连接的NP探针;加入50μL超纯水到三明治结构中,60℃剧烈震荡30分钟,使条形码DNA链去杂交。三明治复合物被磁性分离,收集上清液,内含条形码DNA链,用荧光定量PCR进行定性定量检测。After the sandwich structure was formed, a magnetic field was added, and while the MMPs were fixed with a magnet, the 500 μL PBS buffer was repeatedly washed 4 times to remove unconnected NP probes; 50 μL ultrapure water was added to the sandwich structure and heated at 60 °C. Shake for 30 minutes to dehybridize the barcoded DNA strands. The sandwich complex was magnetically separated, and the supernatant was collected, containing barcoded DNA strands, for qualitative and quantitative detection by fluorescent quantitative PCR.

9、条形码DNA链的荧光定量PCR检测9. Fluorescent quantitative PCR detection of barcoded DNA strands

对获得的条形码DNA链进行荧光PCR检测。检测采用SYBRGreen I染料法,所用试剂购于大连宝生物工程有限公司。Fluorescent PCR detection was performed on the obtained barcoded DNA strands. The SYBRGreen I dye method was used for detection, and the reagents used were purchased from Dalian Bao Biological Engineering Co., Ltd.

反应体系为25μL:The reaction system is 25 μL:

Figure BDA00001615560200101
Figure BDA00001615560200101

反应条件如下:The reaction conditions are as follows:

Figure BDA00001615560200111
Figure BDA00001615560200111

引物1:5’-CTTACACTGTTGCTGCTGCC-3’,Primer 1: 5'-CTTACACTGTTGCTGCTGCC-3',

引物2:5’-TCCTCTACTTCGGGTGGGAA-3’。Primer 2: 5'-TCCTCTACTTCGGGTGGGAA-3'.

10、数据分析10. Data Analysis

分析结果时,基线(baseline)和阈值(threshold)可取仪器默认值。一般情况下取前6~15循环的荧光信号为基线。在进行数据分析时,一般需要进行托运设置,把数据纵轴改为线性(图1、图2)。通过对图1及图2的分析,表明建立的方法可以检测100ag/mL的VP2蛋白及10-5TCID50/0.1mL的CPV病毒滴度数,且呈现良好的线性关系。表明建立的方法可用于微量CPV病毒及蛋白的检测。When analyzing the results, the baseline (baseline) and threshold (threshold) can take the default value of the instrument. Generally, the fluorescence signal of the first 6 to 15 cycles is taken as the baseline. When performing data analysis, it is generally necessary to perform consignment settings and change the vertical axis of the data to linear (Figure 1, Figure 2). Through the analysis of Figure 1 and Figure 2, it shows that the established method can detect 100ag/mL VP2 protein and 10-5TCID 50 /0.1mL CPV virus titer, and presents a good linear relationship. It shows that the established method can be used for the detection of trace CPV virus and protein.

实施例3犬细小病毒的生物条形码检测方法特异性验证Example 3 Biological barcode detection method specificity verification of canine parvovirus

用建立的检测方法同时检测狂犬病毒(为本实验室保存CTN株)、犬瘟热病毒(本实验室保存制苗毒株),检测Ct值均大于40,结果均为阴性,CPV检测为阳性,表明本方法与犬其它感染病毒不反应,特异性较好。Use the established detection method to simultaneously detect rabies virus (the CTN strain is preserved for this laboratory), and canine distemper virus (the strain for making seedlings is preserved for this laboratory), and the detection Ct value is greater than 40, the results are all negative, and the CPV detection is positive , indicating that this method does not react with other canine infectious viruses and has good specificity.

实施例4犬细小病毒的生物条形码荧光定量检测试剂盒的制备Preparation of the biological barcode fluorescence quantitative detection kit of embodiment 4 canine parvovirus

将实施例2的步骤4制得的NP探针和步骤6制得的MMP探针,步骤9的引物对共同包装,得到犬细小病毒的生物条形码荧光定量检测试剂盒。The NP probe prepared in step 4 of Example 2, the MMP probe prepared in step 6, and the primer pair in step 9 were packaged together to obtain a biological barcode fluorescence quantitative detection kit for canine parvovirus.

以上所述仅是本发明的优选实施方式,应当指出,对于本技术领域的普通技术人员来说,在不脱离本发明技术原理的前提下,还可以做出若干改进和润饰,这些改进和润饰也应视为本发明的保护范围。The above is only a preferred embodiment of the present invention, it should be pointed out that for those of ordinary skill in the art, without departing from the technical principle of the present invention, some improvements and modifications can also be made. These improvements and modifications It should also be regarded as the protection scope of the present invention.

Claims (10)

1.一种用于检测犬细小病毒(Canine Parvovirus)的生物条形码,其具有SEQ ID No.1所示的核苷酸序列或其特异性片段。1. A biological barcode for detecting canine parvovirus (Canine Parvovirus), which has a nucleotide sequence shown in SEQ ID No.1 or a specific fragment thereof. 2.用于扩增权利要求1所述生物条形码的特异性引物,其核苷酸序列为:2. be used to amplify the specificity primer of biological barcode described in claim 1, its nucleotide sequence is: 引物1:5’-CTTACACTGTTGCTGCTGCC-3’,Primer 1: 5'-CTTACACTGTTGCTGCTGCC-3', 引物2:5’-TCCTCTACTTCGGGTGGGAA-3’。Primer 2: 5'-TCCTCTACTTCGGGTGGGAA-3'. 3.与权利要求1所述生物条形码配合使用的互补探针NP链,其核苷酸序列为:3. The complementary probe NP chain used in conjunction with the biological barcode described in claim 1, its nucleotide sequence is: 5’-TCCTCTACTTCGGGTGGGAAGTCGGGGTTCA10-(CH2)6-SH-3’。5'-TCCTCTACTTCGGGTGGGAAGTCGGGGTTCA 10 -(CH 2 ) 6 -SH-3'. 4.一种犬细小病毒的生物条形码检测方法,包括以下步骤,4. A biological barcode detection method for canine parvovirus, comprising the following steps, 1)NP探针的制备:用常规方法将金纳米颗粒、抗VP2蛋白的多克隆抗体、权利要求1所述的条形码DNA链和权利要求3所述的互补探针NP链制备NP探针;1) Preparation of NP probes: prepare NP probes with gold nanoparticles, polyclonal antibodies against VP2 protein, the barcode DNA chains described in claim 1 and the complementary probe NP chains described in claim 3 by conventional methods; 2)MMP探针的制备:用磁性微球和抗VP2蛋白的单克隆抗体制备MMP探针;2) Preparation of MMP probes: MMP probes were prepared with magnetic microspheres and anti-VP2 protein monoclonal antibodies; 3)犬细小病毒的生物条形码检测:利用NP探针、MMP探针和犬细小病毒通过抗原、抗体作用制备NP-VP2-MMP三明治复合物,然后在高温低盐条件下,释放条形码DNA链,最后对获得的条形码DNA链进行荧光定量PCR方法检测。3) Biological barcode detection of canine parvovirus: use NP probe, MMP probe and canine parvovirus to prepare NP-VP2-MMP sandwich complex through the action of antigen and antibody, and then release the barcode DNA chain under high temperature and low salt conditions, Finally, the fluorescent quantitative PCR method was used to detect the obtained barcode DNA chain. 5.如权利要求4所述的生物条形码检测方法,其特征在于,步骤1)所述的金纳米颗粒直径为30nm。5. The biological barcode detection method according to claim 4, characterized in that the gold nanoparticles in step 1) have a diameter of 30nm. 6.如权利要求4所述的生物条形码检测方法,其特征在于,步骤2)所述的磁性微球直径为1μm。6. The biological barcode detection method according to claim 4, characterized in that the diameter of the magnetic microspheres in step 2) is 1 μm. 7.如权利要求4-6任一所述的检测方法,其特征在于,所述荧光定量PCR方法所用引物如权利要求2所述。7. The detection method according to any one of claims 4-6, wherein the primers used in the fluorescent quantitative PCR method are as described in claim 2. 8.一种犬细小病毒的生物条形码检测试剂盒,包括包被有抗VP2蛋白的单克隆抗体的MMP探针和抗VP2蛋白的多克隆抗体的NP探针。8. A biological barcode detection kit for canine parvovirus, comprising an MMP probe coated with a monoclonal antibody against VP2 protein and an NP probe coated with a polyclonal antibody against VP2 protein. 9.如权利要求8所述的试剂盒,其特征在于,所述NP探针连接的条形码DNA链具有SEQ ID No.1所示的核苷酸序列,互补探针NP链具有SEQ ID No.2所示的核苷酸序列。9. test kit as claimed in claim 8, is characterized in that, the barcode DNA chain that described NP probe connects has the nucleotide sequence shown in SEQ ID No.1, and complementary probe NP chain has SEQ ID No. The nucleotide sequence shown in 2. 10.如权利要求9所述的试剂盒,其还包括权利要求2所述的引物。10. The kit of claim 9, further comprising the primers of claim 2.
CN2012101410127A 2012-05-08 2012-05-08 Bio-barcode for detecting canine parvovirus and application thereof Pending CN102703442A (en)

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