CN102653558B - Single-chain antibody and application thereof in detecting aflatoxin - Google Patents
Single-chain antibody and application thereof in detecting aflatoxin Download PDFInfo
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Abstract
本发明公开了单链抗体及其在检测黄曲霉毒素中的应用。本发明提供的单链抗体,是由轻链可变区、连接肽和重链可变区组成的多肽;所述连接肽位于所述轻链可变区与所述重链可变区之间;所述轻链可变区如序列表的序列1自N末端第1至110位氨基酸残基所示;所述重链可变区如序列表的序列1自N末端第131至248位氨基酸残基所示。本发明提供的单链抗体对多种黄曲霉毒素具有良好的交叉反应率、高亲和力和高灵敏度,适用于多种多残留黄曲霉毒素的快速免疫检测,将在黄曲霉毒素检测中发挥重大作用。The invention discloses a single-chain antibody and its application in detecting aflatoxins. The single-chain antibody provided by the present invention is a polypeptide consisting of a light chain variable region, a connecting peptide and a heavy chain variable region; the connecting peptide is located between the light chain variable region and the heavy chain variable region ; The light chain variable region is shown in sequence 1 from N-terminal 1 to 110 amino acid residues in the sequence listing; the heavy chain variable region is shown in sequence 1 from N-terminal 131 to 248 amino acids Residues are shown. The single-chain antibody provided by the invention has a good cross-reactivity rate, high affinity and high sensitivity to a variety of aflatoxins, is suitable for rapid immunological detection of a variety of multi-residual aflatoxins, and will play an important role in the detection of aflatoxins .
Description
技术领域 technical field
本发明涉及一种单链抗体及其在检测黄曲霉毒素中的应用。The invention relates to a single-chain antibody and its application in detecting aflatoxins.
背景技术 Background technique
黄曲霉毒素(Aflatoxin,AFT)是一种对人类健康和农业生产都具有巨大威胁的真菌毒素,其化学结构类似,均为二氢呋喃香豆素的衍生物,分子量约为312-346,是由黄曲霉(Aspergillus flavus)寄生曲霉(A.parasiticus)产生的次生代谢产物。全世界每年死于真菌毒素诱发癌症的人多达25万。真菌毒素的污染也导致大量农产品被销毁,每年造成的经济损失达数亿美元。在湿热地区食品和饲料中出现黄曲霉毒素的机率最高。Aflatoxin (Aflatoxin, AFT) is a mycotoxin that poses a huge threat to human health and agricultural production. Its chemical structure is similar, and it is a derivative of dihydrofuranocoumarin. The molecular weight is about 312-346. Secondary metabolites produced by Aspergillus flavus (A. parasiticus). As many as 250,000 people die of mycotoxin-induced cancers around the world every year. Mycotoxin contamination also leads to the destruction of a large number of agricultural products, causing economic losses of hundreds of millions of dollars every year. The occurrence of aflatoxins in food and feed is highest in hot and humid regions.
黄曲霉毒素是一种毒性极强的剧毒物质,对人及动物肝脏组织有破坏作用,严重时可导致肝癌甚至死亡。1993年黄曲霉毒素被世界卫生组织(WHO)的癌症研究机构划定为1类致癌物。目前已分离鉴定出的黄曲霉毒素达20余种,主要包括B1,B2,G1,G2,M1,M2,P1,Q,H1,GM,B2a和毒醇等。在天然污染的食品中以黄曲霉毒素B1最为多见,其毒性和致癌性也最强。由于黄曲霉毒素的巨大毒性,已有70多个国家和地区对食品中AFT的含量作了限量要求。2006年WHO食品法典委员会推荐食品、饲料中黄曲霉毒素最大允许量标准为总量(AFB1、AFB2、AFG1、AFG2的总和)小于15μg/kg;牛奶中AFM1的最大允许量为0.5μg/kg。欧盟于2008年重新评估了真菌毒素在谷物和谷物制品中的水平,制定了更为严格的上限标准:AFB1限量2μg/kg,AFT总量限量4μg/kg。我国卫生部于1990年11月发布了《防止黄曲霉毒素污染食品卫生管理办法》,规定不同类样本中AFB1的限量为5-204μg/kg。Aflatoxin is a highly toxic and highly toxic substance that can damage the liver tissue of humans and animals, and can lead to liver cancer or even death in severe cases. In 1993, aflatoxin was classified as a Class 1 carcinogen by the Cancer Research Institute of the World Health Organization (WHO). At present, more than 20 kinds of aflatoxins have been isolated and identified, mainly including B 1 , B 2 , G 1 , G 2 , M 1 , M 2 , P 1 , Q, H 1 , GM, B 2a and toxic alcohol, etc. . Aflatoxin B 1 is the most common in naturally contaminated food, and its toxicity and carcinogenicity are also the strongest. Due to the great toxicity of aflatoxin, more than 70 countries and regions have imposed limits on the content of AFT in food. In 2006, the WHO Codex Alimentarius Commission recommended that the maximum allowable amount of aflatoxin in food and feed be the total amount (the sum of AFB 1 , AFB 2 , AFG 1 , and AFG 2 ) to be less than 15 μg/kg; the maximum allowable amount of AFM 1 in milk is 0.5 μg/kg. The European Union re-evaluated the level of mycotoxins in grains and grain products in 2008, and established stricter upper limit standards: AFB 1 limit 2μg/kg, AFT total limit 4μg/kg. In November 1990, the Ministry of Health of China issued the "Administrative Measures for the Prevention of Food Contamination by Aflatoxin", which stipulated that the limit of AFB 1 in different types of samples was 5-204 μg/kg.
AFT的定量测定方法分为两大类。一类是建立在色谱基础上的理化分析方法,其中包括了应用荧光检测的薄层色谱法(TLC)、液相色潜法(LC)、高效液相色谱法(HPLC)以及液相-质谱连用检测(LC-MASS)。另一类为免疫化学法,如放射免疫测定法(RIA)和酶联免疫分析法(ELISA)。上述检测技术中,免疫学方法,尤其是ELISA技术由于其快速、低成本、适合大量样本的高通量检测等特点被越来越广泛的应用于黄曲霉毒素分析检测领域。目前国内酶联免疫法试剂盒所用的抗体主要还是多克隆抗体和单克隆抗体。这两种抗体制备技术成本高昂,产量有限,极大地限制了免疫学方法在检测中的进一步发展。Methods for the quantitative determination of AFT fall into two categories. One is a physical and chemical analysis method based on chromatography, which includes thin-layer chromatography (TLC), liquid chromatography (LC), high-performance liquid chromatography (HPLC) and liquid chromatography-mass spectrometry with fluorescence detection. Continuous use detection (LC-MASS). The other is immunochemical methods, such as radioimmunoassay (RIA) and enzyme-linked immunoassay (ELISA). Among the above detection technologies, immunological methods, especially ELISA technology, are more and more widely used in the field of aflatoxin analysis and detection due to its characteristics of rapidity, low cost, and high-throughput detection suitable for a large number of samples. At present, the antibodies used in domestic ELISA kits are mainly polyclonal antibodies and monoclonal antibodies. The high cost and limited output of these two antibody preparation techniques greatly limit the further development of immunological methods in detection.
发明内容 Contents of the invention
本发明的目的是提供一种单链抗体及其在检测黄曲霉毒素中的应用。The purpose of the present invention is to provide a single-chain antibody and its application in detecting aflatoxin.
本发明提供的单链抗体,是由轻链可变区、连接肽和重链可变区组成的多肽;所述连接肽位于所述轻链可变区与所述重链可变区之间;所述轻链可变区如序列表的序列1自N末端第1至110位氨基酸残基所示;所述重链可变区如序列表的序列1自N末端第131至248位氨基酸残基所示。The single-chain antibody provided by the present invention is a polypeptide consisting of a light chain variable region, a connecting peptide and a heavy chain variable region; the connecting peptide is located between the light chain variable region and the heavy chain variable region ; The light chain variable region is shown in sequence 1 from N-terminal 1 to 110 amino acid residues in the sequence listing; the heavy chain variable region is shown in sequence 1 from N-terminal 131 to 248 amino acids Residues are shown.
所述连接肽可如序列表的序列1自N末端第111至130位氨基酸残基所示。The connecting peptide can be as shown in the 111th to 130th amino acid residues from the N-terminal of Sequence 1 in the sequence listing.
所述单链抗体具体可为序列表的序列1所示的多肽或序列表的序列4所示的多肽。The single-chain antibody can specifically be the polypeptide shown in Sequence 1 of the Sequence Listing or the polypeptide shown in Sequence 4 of the Sequence Listing.
本发明还保护编码所述单链抗体的基因,由所述轻链可变区的编码序列、所述连接肽的编码序列和所述重链可变区的编码序列组成。The present invention also protects the gene encoding the single-chain antibody, which consists of the coding sequence of the light chain variable region, the coding sequence of the connecting peptide and the coding sequence of the heavy chain variable region.
所述轻链可变区的编码序列可如序列表的序列2自5’末端第9至338位核苷酸所示。所述重链可变区的编码序列可如序列表的序列2自5’末端第399至752位核苷酸所示。The coding sequence of the light chain variable region can be as shown in the 9th to 338th nucleotides from the 5' end of Sequence 2 in the sequence listing. The coding sequence of the heavy chain variable region can be as shown in the 399th to 752nd nucleotides from the 5' end of Sequence 2 in the sequence listing.
所述连接肽的编码序列可如序列表的序列2自5’末端第339至398位核苷酸所示。The coding sequence of the connecting peptide can be as shown in the 339th to 398th nucleotides from the 5' end of Sequence 2 in the sequence listing.
所述基因具体可为如下(a)或(b):(a)序列表的序列2自5’末端第9至752位核苷酸所示的DNA分子;(b)序列表的序列2自5’末端第9至791位核苷酸所示的DNA分子。The gene can specifically be the following (a) or (b): (a) the DNA molecule shown in the 9th to 752nd nucleotides from the 5' end of sequence 2 in the sequence listing; (b) the sequence 2 in the sequence listing from The DNA molecule indicated by nucleotides 9 to 791 of the 5' end.
含有所述基因的表达盒、重组载体、重组菌或转基因细胞系均属于本发明的保护范围。Expression cassettes, recombinant vectors, recombinant bacteria or transgenic cell lines containing the genes all belong to the protection scope of the present invention.
所述重组载体具体可为将所述基因插入pET-22b(+)质粒得到的重组质粒,更具体可为将所述基因插入pET-22b(+)质粒的NcoI和XhoI酶切位点之间得到的重组质粒。The recombinant vector can specifically be the recombinant plasmid obtained by inserting the gene into the pET-22b (+) plasmid, more specifically, the gene can be inserted between the NcoI and XhoI restriction sites of the pET-22b (+) plasmid The obtained recombinant plasmid.
所述重组菌具体可为将所述重组质粒导入大肠杆菌得到的重组菌,更具体可为将所述重组质粒导入大肠杆菌BL21(DE3)菌株得到的重组质粒。Specifically, the recombinant bacteria can be recombinant bacteria obtained by introducing the recombinant plasmid into Escherichia coli, and more specifically can be recombinant plasmids obtained by introducing the recombinant plasmid into Escherichia coli BL21 (DE3) strain.
本发明还保护一种制备所述单链抗体的方法,是发酵培养所述重组菌,得到所述单链抗体。The invention also protects a method for preparing the single-chain antibody, which is to ferment and cultivate the recombinant bacteria to obtain the single-chain antibody.
所述方法具体包括如下步骤:(1)将所述重组菌培养至OD600=1.0时加入IPTG并使其浓度为0.5mM,然后25℃、250rpm振荡培养8小时,离心收集菌体沉淀;(2)将步骤(1)得到菌体进行细胞破碎,离心收集上清液;(3)将步骤(2)得到的上清液依次进行透析和浓缩,得到单链抗体溶液。The method specifically includes the following steps: (1) When the recombinant bacteria are cultivated to OD600=1.0, IPTG is added to make the concentration 0.5mM, and then vibrated at 25°C and 250rpm for 8 hours, and the bacterial precipitate is collected by centrifugation; (2 ) Disrupting the cells obtained in step (1), and centrifuging to collect the supernatant; (3) Dialyzing and concentrating the supernatant obtained in step (2) in sequence to obtain a single-chain antibody solution.
本发明还保护以上任一所述单链抗体在检测黄曲霉毒素中的应用。The present invention also protects the application of any one of the above single-chain antibodies in the detection of aflatoxins.
所述黄曲霉毒素具体可为AFB1(黄曲霉毒素B1)、AFB2(黄曲霉毒素B2)、AFM1(黄曲霉毒素M1)、AFM2(黄曲霉毒素M2)、AFG1(黄曲霉毒素G1)或AFG2(黄曲霉毒素G2)。The aflatoxin can specifically be AFB 1 (aflatoxin B 1 ), AFB 2 (aflatoxin B 2 ), AFM 1 (aflatoxin M 1 ), AFM 2 (aflatoxin M 2 ), AFG 1 (aflatoxin G 1 ) or AFG 2 (aflatoxin G 2 ).
所述单链抗体具体可为采用以上所述方法制备得到的单链抗体。Specifically, the single-chain antibody may be a single-chain antibody prepared by the method described above.
重组抗体是新发展起来的第三代抗体制备技术,通过对抗体文库的高效筛选,可以获得特性优良的抗体片段。通过高效的表达系统表达该抗体片段,可以低成本、大量制备该抗体片段。本发明针对目前单克隆抗体和多克隆抗体的不足,以AFM1特异性单抗杂交瘤为来源,制备单链抗体(scFv),并采用蛋白质体外进化技术和噬菌体展示抗体库技术对其进行性能优化,提高其亲和力及对不同AFT的交叉反应率。Recombinant antibody is a newly developed third-generation antibody preparation technology. Through efficient screening of antibody libraries, antibody fragments with excellent characteristics can be obtained. By expressing the antibody fragment through an efficient expression system, the antibody fragment can be prepared in large quantities at low cost. Aiming at the shortcomings of current monoclonal antibodies and polyclonal antibodies, the present invention uses AFM 1- specific monoclonal antibody hybridoma as a source to prepare single-chain antibody (scFv), and uses protein in vitro evolution technology and phage display antibody library technology to perform its performance Optimization to improve its affinity and cross-reactivity to different AFTs.
本发明提供的单链抗体对多种黄曲霉毒素具有良好的交叉反应率、高亲和力和高灵敏度,适用于多种多残留黄曲霉毒素的快速免疫检测,将在黄曲霉毒素检测中发挥重大作用。The single-chain antibody provided by the invention has a good cross-reactivity rate, high affinity and high sensitivity to a variety of aflatoxins, is suitable for rapid immunological detection of a variety of multi-residual aflatoxins, and will play an important role in the detection of aflatoxins .
附图说明 Description of drawings
图1为黄曲霉毒素scFv空间结构模型;A:scFv主链结构示意图;B:scFv溶液可及表面图;红色为HCDRs,蓝色为LCDRs。Figure 1 is the spatial structure model of aflatoxin scFv; A: schematic diagram of scFv main chain structure; B: solution-accessible surface of scFv; red is HCDRs, and blue is LCDRs.
图2为scFv与AFM1的相互作用计算机模拟;A:AFM1结合部位(黄色为HCDR3,橙色为HCDR2,红色为HCDR3,蓝色为LCDR3);B:抗原抗体相互作用2D示意图(紫红色为产生极性接触的氨基酸残基,绿色为产生非极性接触的氨基酸残基,蓝色虚线为氢键作用)。Figure 2 is the computer simulation of the interaction between scFv and AFM 1 ; A: AFM 1 binding site (yellow is HCDR3, orange is HCDR2, red is HCDR3, blue is LCDR3); B: 2D schematic diagram of antigen-antibody interaction (purple is Amino acid residues that make polar contacts, green ones that make nonpolar contacts, and blue dotted lines that show hydrogen bonding).
图3为采用黄曲霉毒素B1制作的曲线图。Figure 3 is a graph made using aflatoxin B1 .
具体实施方式 Detailed ways
以下的实施例便于更好地理解本发明,但并不限定本发明。下述实施例中的实验方法,如无特殊说明,均为常规方法。下述实施例中所用的试验材料,如无特殊说明,均为自常规生化试剂商店购买得到的。以下实施例中的定量试验,均设置三次重复实验,结果取平均值。AFB1(黄曲霉毒素B1)、AFM1(黄曲霉毒素M1)、AFM2(黄曲霉毒素M2)、AFB2(黄曲霉毒素B2)、AFG1(黄曲霉毒素G1)和AFG2(黄曲霉毒素G2)均购自美国Sigma公司。The following examples facilitate a better understanding of the present invention, but do not limit the present invention. The experimental methods in the following examples are conventional methods unless otherwise specified. The test materials used in the following examples, unless otherwise specified, were purchased from conventional biochemical reagent stores. Quantitative experiments in the following examples were all set up to repeat the experiments three times, and the results were averaged. AFB 1 (aflatoxin B 1 ), AFM 1 (aflatoxin M 1 ), AFM 2 (aflatoxin M 2 ), AFB 2 (aflatoxin B 2 ), AFG 1 (aflatoxin G 1 ) and AFG 2 (aflatoxin G 2 ) was purchased from Sigma, USA.
实施例中所用的PBS缓冲液,如无特殊说明,均为pH7.4、0.01M的PBS缓冲液。The PBS buffers used in the examples are all pH 7.4, 0.01M PBS buffers unless otherwise specified.
实施例中所用的碳酸盐缓冲液均为pH9.6、0.05mol/L的碳酸钠缓冲液。The carbonate buffer used in the embodiment is the sodium carbonate buffer of pH9.6, 0.05mol/L.
牛血清白蛋白简称BSA。Bovine serum albumin is referred to as BSA.
N,N-二甲基甲酰胺(DMF)如式(Ⅰ)所示。N,N-dimethylformamide (DMF) is represented by formula (I).
式(Ⅰ)Formula (I)
N-羟基琥珀酰亚胺(NHS)如式(Ⅱ)所示。N-hydroxysuccinimide (NHS) is represented by formula (II).
式(Ⅱ)Formula (Ⅱ)
1-乙基-(3-二甲基氨基丙基)碳二亚胺盐酸盐(EDC)如式(Ⅲ)所示。1-Ethyl-(3-dimethylaminopropyl) carbodiimide hydrochloride (EDC) is represented by formula (III).
式(Ⅲ)Formula (Ⅲ)
羧甲基羟胺半盐酸盐如式(Ⅳ)所示。Carboxymethyl hydroxylamine hemihydrochloride is shown in formula (IV).
式(Ⅳ)Formula (Ⅳ)
实施例1、单链抗体的发现Embodiment 1, discovery of single-chain antibody
1、杂交瘤细胞mRNA的提取及全长scFv基因构建1. Extraction of hybridoma mRNA and construction of full-length scFv gene
取均一性、纯度良好的杂交瘤细胞(分泌AFM1特异性单克隆抗体)1×106个,提取总RNA并纯化得到mRNA,逆转录得到cDNA。使用全套引物,以cDNA为模板分别扩增得到重链可变区(VH)、轻链可变区(VL)基因,分别克隆至pCR 2.1载体中并测序,经计算机分析及数据库BLAST比对后,鉴定出具有潜在免疫活性和正确表达框的VH和VL基因。根据上述经鉴定的基因设计重叠延伸PCR(SOE-PCR)引物,并拼接构建全长scFv基因。对此scFv基因进行测序和序列分析,并克隆至pCR 2.1载体中进行保存和扩繁。Take 1×10 6 hybridoma cells with good homogeneity and purity (secreting AFM 1- specific monoclonal antibody), extract total RNA and purify to obtain mRNA, and reverse transcribe to obtain cDNA. Using a full set of primers, cDNA was used as a template to amplify the heavy chain variable region (VH) and light chain variable region (VL) genes, respectively, cloned into the pCR 2.1 vector and sequenced, after computer analysis and database BLAST comparison , VH and VL genes with potential immunocompetence and correct expression cassettes were identified. Overlap extension PCR (SOE-PCR) primers were designed according to the above-identified genes, and the full-length scFv gene was constructed by splicing. The scFv gene was sequenced and analyzed, and cloned into the pCR 2.1 vector for preservation and amplification.
2、scFv表达及鉴定2. scFv expression and identification
将上述scFv由pCR 2.1载体中克隆至pET系列载体中进行scFv表达,调整表达条件,是目的scFv蛋白定位于周至腔。采用温和的渗透休克法提取表达宿主菌的周至腔蛋白,并对其进行SDS变性聚丙烯酰胺凝胶电泳(SDS page)和免疫印迹分析(immunoblotting),评价表达产物及其表达效率。以AFM1-BSA为包被抗原,对周至腔scFv进行间接竞争ELISA分析,评价该scFv的免疫活性。The above-mentioned scFv was cloned from the pCR 2.1 vector into the pET series vector for scFv expression, and the expression conditions were adjusted so that the target scFv protein was located in the peripheral cavity. Gentle osmotic shock method was used to extract the periluminal protein of the expressed host bacteria, and it was subjected to SDS denatured polyacrylamide gel electrophoresis (SDS page) and immunoblotting analysis (immunoblotting) to evaluate the expression product and its expression efficiency. Using AFM1-BSA as the coating antigen, the periluminal scFv was analyzed by indirect competition ELISA to evaluate the immune activity of the scFv.
3、黄曲霉毒素scFv同源建模及分子对接3. Homology modeling and molecular docking of aflatoxin scFv
(1)同源建模(1) Homologous modeling
将scFv序列中的VL和VH序列分别提交至蛋白质数据库(Protein Data Bank,BrookhavenNational Laboratory),通过BLAST比对获取同源性最高的蛋白质晶体结构。使用Discovery Studio 2.5.5(DS 2.5.5)中Modeler算法对上述VL、VH序列和其同源性晶体结构进行比对(Alignment),并以晶体结构模板中的抗体可变区框架区为基础构建同源模型。由于抗体CDR区域变异性较高,因此在上述同源模型基础上利用DS 2.5.5中Looper算法界定所得VL、VH模型中的CDR区,并针对CDR区进行PDB数据库检索,获取同源性最高的CDR晶体结构模板并重新构建CDR区。针对变异性最高的H CDR3区,由于其最佳模板的同源性低于50%,因此采用de novo算法重头计算获取其合理构象。在分别构建、获取VH和VL的同源模型后,通过最小二乘法进行蛋白质主链结构重叠以最终构建Fv结构,并进行200步最陡下降法能量最小化(steepestdescent energy minimization)和200步共轭梯度能量最小化(Cojugate Gradient energyminimization)。最终所得scFv空间结构模型如图1。Submit the VL and VH sequences in the scFv sequence to the protein database (Protein Data Bank, Brookhaven National Laboratory), and obtain the protein crystal structure with the highest homology through BLAST alignment. Use the Modeler algorithm in Discovery Studio 2.5.5 (DS 2.5.5) to align the above VL and VH sequences with their homologous crystal structures (Alignment), and use the antibody variable region framework region in the crystal structure template as the basis Build homology models. Due to the high variability of antibody CDR regions, on the basis of the above homology model, the Looper algorithm in DS 2.5.5 was used to define the CDR regions in the VL and VH models obtained, and the PDB database search was performed for the CDR regions to obtain the highest homology CDR crystal structure template and reconstruct the CDR region. For the H CDR3 region with the highest variability, since the homology of its optimal template is less than 50%, the de novo algorithm was used to calculate its reasonable conformation from scratch. After constructing and obtaining the homology models of VH and VL respectively, the protein main chain structure was overlapped by the least square method to finally construct the Fv structure, and the 200-step steepest descent energy minimization (steepestdescent energy minimization) and 200-step total Cojugate Gradient energy minimization. The resulting scFv spatial structure model is shown in Figure 1.
(2)分子对接(2) Molecular docking
黄曲霉毒素化学结构由NCBI PubChem数据库检索获得。使用DS 2.5.5和CCDCGold suite 4.2进行上述黄曲霉素特异性scFv与AFM1的柔性对接。获得10个对接结果,采用Gold score对所有对接结果中的小分子构象进行评估,并使用DS 2.5.5中配体分析模块(Analyze biding site tool)对结果进行进一步分析,结果如图2。The chemical structures of aflatoxins were retrieved from the NCBI PubChem database. The flexible docking of the aflatoxin-specific scFv to AFM 1 described above was performed using DS 2.5.5 and CCDCGold suite 4.2. 10 docking results were obtained, and Gold score was used to evaluate the conformation of small molecules in all the docking results, and the results were further analyzed using the ligand analysis module (Analyze bidding site tool) in DS 2.5.5, the results are shown in Figure 2.
4、scFv高变区(CDRs)定点突变及筛选4. Site-directed mutation and screening of scFv hypervariable regions (CDRs)
在抗体与半抗原的结合中,抗体结构中的CDRs区域,尤其是重链CDR3(H CDR3)和轻链CDR3(L CDR3)发挥着最为重要的作用。同时,由于半抗原分子的体积极小,故往往其只能够和6个CDR区中的少数几个发生接触。因此,需要通过分子模拟来指导后续优化,选取相对有效的突变区域及进化策略。In the combination of antibody and hapten, the CDRs region in the antibody structure, especially the heavy chain CDR3 (H CDR3) and light chain CDR3 (LCDR3) play the most important role. At the same time, due to the extremely small size of the hapten molecule, it can only be in contact with a few of the six CDR regions. Therefore, it is necessary to use molecular simulation to guide subsequent optimization and select relatively effective mutation regions and evolution strategies.
上述计算机分子模拟结果显示,在scFv对AFM1的结合中,重链CDR2区的H59Tyr发挥着最为重要的作用,形成了氢键以及较强的π-π相互作用。此外,轻链CDR3为疏水作用洞穴做出了相对主要的贡献。以此分析为指导,根据已知的scFv基因序列设计简并引物,通过PCR技术分别在H CDR3和L CDR3引入突变。这样能够最大程度的保持原抗原抗体结合中的氢键不受影响。同时,为避免产生过多无活性或不能正常表达的克隆,采用经调整的“NNS”简并密码子引入突变,在每个氨基酸突变点产生50%的随机突变几率。由于噬菌体展示文库的库容量限制性(约为109),因此每次进行6-7个氨基酸的随机突变,约产生6.4×107个突变子。因此,对于上述结合分析中与半抗原发生接触的13个氨基酸,需要分别构建两个噬菌体突变展示文库(库容量分别为1.0×107~8),连续进行两次突变筛选。The above computer molecular simulation results show that in the binding of scFv to AFM 1 , H59Tyr in the CDR2 region of the heavy chain plays the most important role, forming hydrogen bonds and strong π-π interactions. In addition, the light chain CDR3 makes a relatively major contribution to the hydrophobic interaction cavity. Guided by this analysis, degenerate primers were designed according to the known scFv gene sequence, and mutations were introduced in H CDR3 and L CDR3 by PCR technology. In this way, the hydrogen bond in the original antigen-antibody binding can be kept unaffected to the greatest extent. At the same time, in order to avoid too many clones that are inactive or unable to express normally, the adjusted "NNS" degenerate codon is used to introduce mutations, and a 50% random mutation probability is generated at each amino acid mutation point. Due to the limitation of the library capacity of the phage display library (about 10 9 ), random mutations of 6-7 amino acids were performed each time, and about 6.4×10 7 mutants were generated. Therefore, for the 13 amino acids that are in contact with the hapten in the above binding analysis, two phage mutation display libraries need to be constructed respectively (the library capacity is 1.0×10 7 ~ 8 ), and two mutation screenings are performed consecutively.
5、活性克隆表达及鉴定5. Active clone expression and identification
在构建突变噬菌体展示文库后,使用生物素标记的半抗原和链霉亲和素包被的纳米磁珠对文库中的活性克隆进行纯液相免疫亲和富集筛选。共进行4-5轮,在每轮富集中逐步降低筛选所用抗原浓度,并更换不同的进化目标对突变文库进行富集筛选(见表1),以改善抗体对同族药物的交叉反应率以及亲和力。After constructing the mutant phage display library, the active clones in the library were screened by pure liquid-phase immunoaffinity enrichment using biotin-labeled hapten and streptavidin-coated nano-magnetic beads. A total of 4-5 rounds were carried out, and in each round of enrichment, the concentration of antigen used for screening was gradually reduced, and different evolutionary targets were replaced to enrich and screen the mutant library (see Table 1) to improve the cross-reactivity rate and affinity of antibodies to drugs of the same family .
表1噬菌体突变展示文库的富集和筛选Table 1 Enrichment and screening of phage mutation display library
在最后一轮富集结束后,随机挑选单独菌落克隆进行scFv的分泌表达,并制备周至腔提取物,进行SDS-Page和ELISA鉴定。After the last round of enrichment, individual colony clones were randomly selected for secretory expression of scFv, and peritoneal cavity extracts were prepared for SDS-Page and ELISA identification.
所得scFv序列如序列表的序列1所示。序列1中,自N末端第1至110位氨基酸残基为轻链可变区,第111至130位氨基酸残基为连接肽,第131至248位氨基酸残基为重链可变区。The obtained scFv sequence is shown as sequence 1 in the sequence listing. In Sequence 1, amino acid residues 1 to 110 from the N-terminal are light chain variable regions, amino acid residues 111 to 130 are connecting peptides, and amino acid residues 131 to 248 are heavy chain variable regions.
实施例2、单链抗体的制备Embodiment 2, the preparation of single-chain antibody
一、重组质粒的构建1. Construction of recombinant plasmids
1、合成序列表的序列2所示的双链DNA分子(自5’末端第1至6位核苷酸为NcoI酶切识别序列,第9至338位核苷酸为轻链可变区的编码序列,第339至398位核苷酸为连接肽的编码序列,第399至752位核苷酸为重链可变区的编码序列,第762至791位核苷酸为C-myc tag标签的编码序列,第792至797位核苷酸为XhoI酶切识别序列)。1. Synthesize the double-stranded DNA molecule shown in Sequence 2 of the sequence listing (the 1st to 6th nucleotides from the 5' end are the NcoI restriction recognition sequence, and the 9th to 338th nucleotides are the light chain variable region Coding sequence, the 339th to 398th nucleotides are the coding sequence of the connecting peptide, the 399th to 752nd nucleotides are the coding sequence of the heavy chain variable region, and the 762nd to 791st nucleotides are the C-myc tag tag The coding sequence, the 792nd to 797th nucleotides are the XhoI restriction recognition sequence).
2、以步骤1合成的双链DNA分子为模板,用F1和R1组成的引物对进行PCR扩增,得到PCR扩增产物。2. Using the double-stranded DNA molecule synthesized in step 1 as a template, perform PCR amplification with a primer pair composed of F1 and R1 to obtain a PCR amplification product.
F1:5’-CCATGGCACAGACGGTTG-3’;F1: 5'- CCATGG CACAGACGGTTG-3';
R1:5’-CTCGAGCAGGTCTTCTTC-3’。R1: 5'- CTCGAG CAGGTCTTCTTC-3'.
3、用限制性内切酶NcoI和XhoI双酶切步骤2的PCR扩增产物,回收酶切产物。3. Digest the PCR amplification product of step 2 with restriction endonucleases NcoI and XhoI, and recover the digested product.
4、用限制性内切酶NcoI和XhoI双酶切pET-22b(+)质粒(Novagen,北京),回收载体骨架(约5424bp)。4. Digest the pET-22b(+) plasmid (Novagen, Beijing) with restriction endonucleases NcoI and XhoI, and recover the vector backbone (about 5424bp).
5、将步骤3的酶切产物和步骤4的载体骨架连接,得到重组质粒。根据测序结果,对重组质粒进行结构描述如下:在pET-22b(+)质粒的NcoI和XhoI酶切位点之间插入了序列表的序列2所示的双链DNA分子。在重组质粒中,序列表的序列2所示的双链DNA分子5’末端与载体骨架上的引导肽pelB的编码序列融合、3’末端与载体骨架上的His-tag标签的编码序列融合,表达融合蛋白。5. Ligate the digested product of step 3 with the vector backbone of step 4 to obtain a recombinant plasmid. According to the sequencing results, the structure of the recombinant plasmid is described as follows: a double-stranded DNA molecule shown in sequence 2 of the sequence table is inserted between the NcoI and XhoI restriction sites of the pET-22b(+) plasmid. In the recombinant plasmid, the 5' end of the double-stranded DNA molecule shown in Sequence 2 of the sequence table is fused with the coding sequence of the guide peptide pelB on the vector backbone, and the 3' end is fused with the coding sequence of the His-tag tag on the vector backbone, Express the fusion protein.
二、重组菌的构建2. Construction of recombinant bacteria
将步骤一构建的重组质粒导入大肠杆菌BL21(DE3)菌株(Novagen,北京),得到重组菌。The recombinant plasmid constructed in step 1 was introduced into Escherichia coli BL21(DE3) strain (Novagen, Beijing) to obtain recombinant bacteria.
三、单链抗体的表达及纯化3. Expression and purification of single chain antibody
1、将步骤二构建的重组菌接种至Super Broth培养基,使重组菌的初始浓度为OD600=0.1,37℃、250rpm振荡培养至OD600=1.0;加入IPTG并使其浓度为0.5mM,25℃、250rpm振荡培养8小时;然后将菌液6000g离心15min,收集菌体沉淀,进行细胞破碎(超声破碎的参数:超声探头为6Φ,功率400W,全程工作时间30分钟,其中,每个循环超声3秒间隔5秒钟),离心(12000g、30min)收集上清液,然后将上清液在PBS缓冲液中进行透析,透析结束用0.22μm滤膜过滤,收集滤液4°C保存备用。1. Inoculate the recombinant bacteria constructed in step 2 into the Super Broth medium, so that the initial concentration of the recombinant bacteria is OD600=0.1, shake culture at 37°C and 250rpm until OD600=1.0; add IPTG to make the concentration 0.5mM, 25°C , 250rpm shaking culture for 8 hours; then centrifuge the bacterial solution at 6000g for 15min, collect the bacterial sediment, and carry out cell disruption (parameters for ultrasonic disruption: ultrasonic probe is 6Φ, power 400W, and the whole working time is 30 minutes, wherein, each cycle ultrasonic 3 Second interval 5 seconds), centrifuge (12000g, 30min) to collect the supernatant, then dialyze the supernatant in PBS buffer, filter with 0.22μm filter membrane after dialysis, collect the filtrate and store it at 4°C for later use.
2、将1g粉状Ni-IDA树脂(德国MACHEREY-NAGEL公司)溶于5mL超纯水,然后加入层析柱,使其在重力作用下沉积形成稳定的柱床。待层析柱中的水液面降至柱床面时,缓慢加入5倍柱体积的pH 8.0PBS缓冲液进行纯化柱平衡。随后加入步骤1收集的滤液,使其在重力作用下通过纯化柱,当其液面降至柱床面时,加入10倍柱体积的含20mM咪唑的pH 8.0PBS缓冲液进行洗涤,去除杂蛋白。最后加入3倍柱体积的含100mM咪唑的pH8.0的PBS缓冲液,洗脱目的蛋白,收集过柱后洗脱液。最后用40g/100mL的PEG8000水溶液对过柱后洗脱液进行浓缩(4℃),得到单链抗体溶液。2. Dissolve 1g of powdered Ni-IDA resin (MACHEREY-NAGEL, Germany) in 5mL of ultrapure water, and then add it to the chromatography column to make it settle under the action of gravity to form a stable column bed. When the water level in the chromatography column drops to the column bed level, slowly add 5 times the column volume of pH 8.0 PBS buffer to balance the purification column. Then add the filtrate collected in step 1, make it pass through the purification column under gravity, when its liquid level drops to the column bed surface, add the pH 8.0 PBS damping fluid containing 20mM imidazole of 10 times column volume to wash, remove foreign protein . Finally, 3 times the column volume of PBS buffer containing 100 mM imidazole at pH 8.0 was added to elute the target protein, and the post-column eluate was collected. Finally, the 40g/100mL PEG8000 aqueous solution was used to concentrate the eluate after passing through the column (4°C) to obtain a single-chain antibody solution.
四、对照溶液的制备Fourth, the preparation of the control solution
1、合成序列表的序列3所示的双链DNA分子(自5’末端第1至6位核苷酸为NcoI酶切识别序列,第18至47位核苷酸为C-myc tag标签的编码序列,第48至53位核苷酸为XhoI酶切识别序列)。1. Synthesize the double-stranded DNA molecule shown in sequence 3 of the sequence list (the 1st to 6th nucleotides from the 5' end are the NcoI restriction recognition sequence, and the 18th to 47th nucleotides are the C-myc tag tag Coding sequence, the 48th to 53rd nucleotides are the XhoI restriction recognition sequence).
步骤2至4同步骤一的2至4。Steps 2 to 4 are the same as Step 1 to 2 to 4.
5、将步骤3的酶切产物和步骤4的载体骨架连接,得到对照质粒。根据测序结果,对对照质粒进行结构描述如下:在pET-22b(+)质粒的NcoI和XhoI酶切位点之间插入了序列表的序列3所示的双链DNA分子。5. Ligate the digested product of step 3 with the vector backbone of step 4 to obtain a control plasmid. According to the sequencing results, the structure of the control plasmid is described as follows: a double-stranded DNA molecule shown in sequence 3 of the sequence table is inserted between the NcoI and XhoI restriction sites of the pET-22b(+) plasmid.
6、将步骤5得到的对照质粒导入大肠杆菌BL21(DE3)菌株(Novagen,北京),得到对照菌。6. Introduce the control plasmid obtained in step 5 into Escherichia coli BL21(DE3) strain (Novagen, Beijing) to obtain control bacteria.
7、将对照菌代替重组菌进行步骤三,得到对照溶液。7. Substitute the control bacteria for the recombinant bacteria to perform step 3 to obtain a control solution.
实施例3、单链抗体的应用Embodiment 3, the application of single-chain antibody
一、AFB1-BSA的制备1. Preparation of AFB 1 -BSA
1、AFB1-BSA的合成1. Synthesis of AFB 1 -BSA
(1)将5mg黄曲霉素B1溶于5ml吡啶,加入25mg羧甲基羟胺半盐酸盐,室温避光搅拌反应过夜,40℃旋干;用少量甲醇溶解,TLC刮板分离,展开剂为甲醇:氯仿=1:9,取RF=0.2的产品荧光带,用2ml乙酸乙酯提取,加入500μl甲醇和200μl DMF辅助提取,过滤,滤液40℃旋蒸,得产品液300μl。(1) Dissolve 5mg of aflatoxin B 1 in 5ml of pyridine, add 25mg of carboxymethylhydroxylamine hemihydrochloride, stir overnight at room temperature in the dark, spin dry at 40°C; dissolve with a small amount of methanol, separate with a TLC scraper, and develop The reagent is methanol: chloroform = 1:9, take the fluorescent band of the product with RF = 0.2, extract it with 2ml ethyl acetate, add 500μl methanol and 200μl DMF to assist in the extraction, filter, and rotate the filtrate at 40°C to obtain 300μl of the product solution.
(2)取上述产品液300μl,再加入300μl DMF和300μl水,加入8mg EDC和8mgNHS,活化1h,反应避光,得到溶液Ⅰ;(2) Take 300 μl of the above product solution, add 300 μl DMF and 300 μl water, add 8 mg EDC and 8 mg NHS, activate for 1 hour, react in the dark, and obtain solution Ⅰ;
(3)将10mg BSA溶于1ml碳酸盐缓冲液(0.1M,PH=9.51),充分溶解,室温搅拌,即为溶液Ⅱ。(3) Dissolve 10mg BSA in 1ml carbonate buffer (0.1M, PH=9.51), fully dissolve, and stir at room temperature, which is solution II.
(4)将溶液Ⅰ加至溶液Ⅱ中,缓慢搅拌24h后装入透析袋,在生理盐水中4℃透析72h(中间换水6次),然后于4℃条件下,8000rmp离心30min,取上清,即AFB1-BSA溶液,分装于安培瓶中,-20℃保存。(4) Add solution I to solution II, stir slowly for 24 hours, put it into a dialysis bag, dialyze in normal saline at 4°C for 72 hours (change the water 6 times in the middle), then centrifuge at 8000rmp for 30 minutes at 4°C, take the upper Clear, namely AFB 1 -BSA solution, divided into ampoule bottles and stored at -20°C.
(5)将AFB1-BSA溶液用PBS缓冲液稀释后,测定280nm和260nm的分光光度值,按公式计算稀释液中的蛋白浓度,将测得的蛋白浓度值乘以其稀释倍数后即为原AFB1-BSA溶液中的AFB1-BSA浓度。蛋白质浓度(mg/ml)=1.45×OD280-0.74×OD260。AFB1-BSA溶液中的AFB1-BSA浓度为6.1mg/ml。(5) After diluting the AFB 1 -BSA solution with PBS buffer solution, measure the spectrophotometric values at 280nm and 260nm, calculate the protein concentration in the diluent according to the formula, and multiply the measured protein concentration value by its dilution factor. AFB 1 -BSA concentration in the original AFB 1 -BSA solution. Protein concentration (mg/ml) = 1.45 x OD 280 -0.74 x OD 260 . The concentration of AFB 1 -BSA in the AFB 1 -BSA solution was 6.1 mg/ml.
2、AFB1-BSA的表征2. Characterization of AFB 1 -BSA
将AFB1-BSA溶液用PBS缓冲液稀释(使AFB1-BSA的浓度为5mg/mL),作为溶液甲;将含5mg/mL AFB1的PBS缓冲液作为溶液乙;将含5mg/mL BSA的PBS缓冲液作为溶液丙。分别将溶液甲、溶液乙和溶液丙进行紫外(200-380nm)光谱扫描。与溶液丙相比溶液甲的紫外图谱发生了明显变化,说明化合物与BSA成功偶联。Dilute the AFB 1 -BSA solution with PBS buffer (to make the concentration of AFB 1 -BSA 5mg/mL) as solution A; use the PBS buffer containing 5mg/mL AFB 1 as solution B; make the solution containing 5mg/mL BSA PBS buffer as solution C. The solution A, solution B and solution C were subjected to ultraviolet (200-380nm) spectral scanning. Compared with solution C, the UV spectrum of solution A changed significantly, indicating that the compound was successfully coupled with BSA.
二、单链抗体的应用2. Application of single chain antibody
1、采用实施例2制备的AFB1-BSA(采用碳酸盐缓冲液调节浓度)进行包被,100μL/孔,AFB1-BSA的包被浓度为0.5μg/mL。1. The AFB 1 -BSA prepared in Example 2 (concentration adjusted by carbonate buffer) was used for coating, 100 μL/well, and the coating concentration of AFB 1 -BSA was 0.5 μg/mL.
2、4℃孵育16小时。2. Incubate at 4°C for 16 hours.
3、封闭并洗板。3. Seal and wash the plate.
4、每孔加入50μL黄曲霉毒素B1(由黄曲霉毒素B1和PBS缓冲液组成;黄曲霉毒素B1的浓度分别为0.0001ng/ml、0.001ng/ml、0.01ng/ml、0.05ng/ml、0.1ng/ml、0.5ng/ml、0.8ng/ml、1ng/ml、5ng/ml、10ng/ml;将只加入PBS缓冲液的孔作为对照孔);每个浓度设置3个复孔。4. Add 50 μL of aflatoxin B 1 to each well (composed of aflatoxin B 1 and PBS buffer; the concentrations of aflatoxin B 1 are 0.0001ng/ml, 0.001ng/ml, 0.01ng/ml, 0.05ng respectively /ml, 0.1ng/ml, 0.5ng/ml, 0.8ng/ml, 1ng/ml, 5ng/ml, 10ng/ml; the wells only added with PBS buffer were used as control wells); each concentration set 3 replicates hole.
5、每孔加入50μL实施例2制备的单链抗体溶液。5. Add 50 μL of the single-chain antibody solution prepared in Example 2 to each well.
6、室温孵育2h,洗板。6. Incubate at room temperature for 2 hours and wash the plate.
7、每孔加入100μL辣根过氧化物酶标记的抗C-myc抗体(北京中杉金桥生物技术有限公司,TA-1),室温孵育2h。7. Add 100 μL horseradish peroxidase-labeled anti-C-myc antibody (Beijing Zhongshan Jinqiao Biotechnology Co., Ltd., TA-1) to each well and incubate at room temperature for 2 hours.
8、洗板。8. Wash the board.
9、加入TMB显色液,避光显色15min。9. Add TMB color developing solution, and develop color in the dark for 15 minutes.
10、每孔加入100μL 2mol/L硫酸中止反应;读OD450值。10. Add 100 μL 2mol/L sulfuric acid to each well to stop the reaction; read the OD 450 value.
将采用各个浓度的黄曲霉毒素B1得到的吸光值(三个复孔的平均值)除以对照孔的吸光值作为纵坐标,以黄曲霉毒素B1浓度(ng/ml)为横坐标绘制曲线图。结果见图3。对照曲线图,得到纵坐标数值等于50%时对应的黄曲霉毒素B1浓度(μg/L),即IC50值。Divide the absorbance value obtained by using various concentrations of aflatoxin B 1 (the average value of three replicate wells) by the absorbance value of the control well as the vertical axis, and draw the aflatoxin B 1 concentration (ng/ml) as the horizontal axis Graph. The results are shown in Figure 3. According to the graph, the corresponding aflatoxin B 1 concentration (μg/L) when the ordinate value is equal to 50% is obtained, that is, the IC 50 value.
单链抗体检测黄曲霉毒素B1的IC50值为0.125ng/ml,检测限为0.01ng/ml。The IC 50 value of scFv for detection of aflatoxin B 1 was 0.125ng/ml, and the detection limit was 0.01ng/ml.
三、对照试验3. Controlled test
将对照溶液代替单链抗体溶液,其它均同步骤二,采用各个黄曲霉毒素B1浓度的吸光值均相等,均未发生酶联免疫反应。The single-chain antibody solution was replaced by the control solution, and the others were the same as step 2. The absorbance values of each aflatoxin B 1 concentration were equal, and no ELISA occurred.
四、单链抗体的交叉反应率4. Cross-reactivity rate of single chain antibody
1至3同步骤二的1至3。1 to 3 are the same as 1 to 3 in step 2.
4、每孔加入50μL黄曲霉毒素(由黄曲霉毒素和PBS缓冲液组成;黄曲霉毒素的浓度分别为0.0001ng/ml、0.001ng/ml、0.01ng/ml、0.05ng/ml、0.1ng/ml、0.5ng/ml、0.8ng/ml、1ng/ml、5ng/ml、10ng/ml;将只加入PBS缓冲液的孔作为对照孔);每个浓度设置3个复孔。4. Add 50 μL of aflatoxin to each well (composed of aflatoxin and PBS buffer; the concentration of aflatoxin is 0.0001ng/ml, 0.001ng/ml, 0.01ng/ml, 0.05ng/ml, 0.1ng/ml, respectively. ml, 0.5ng/ml, 0.8ng/ml, 1ng/ml, 5ng/ml, 10ng/ml; the wells only added with PBS buffer were used as control wells); each concentration was set up with 3 replicate wells.
分别采用以下几种黄曲霉毒素:AFB1、AFM1、AFM2、AFB2、AFG1、AFG2。The following aflatoxins were used: AFB 1 , AFM 1 , AFM 2 , AFB 2 , AFG 1 , AFG 2 .
5至10同步骤二的5至10。5 to 10 are the same as 5 to 10 in step 2.
将采用各个浓度的具体黄曲霉毒素得到的吸光值(三个复孔的平均值)除以对照孔的吸光值作为纵坐标,以具体黄曲霉毒素浓度(ng/ml)为横坐标绘制曲线图。对照曲线图,得到纵坐标数值等于50%时对应的具体黄曲霉毒素浓度(μg/L),即IC50值。Divide the absorbance value (average value of three duplicate wells) obtained by using each concentration of specific aflatoxin by the absorbance value of the control well as the vertical axis, and draw the curve with the specific aflatoxin concentration (ng/ml) as the horizontal axis . According to the graph, the specific aflatoxin concentration (μg/L) corresponding to the ordinate value equal to 50% is obtained, that is, the IC 50 value.
用下式计算单链抗体对黄曲霉毒素的交叉反应率。Use the following formula to calculate the cross-reactivity rate of the single-chain antibody to aflatoxin.
单链抗体检测黄曲霉毒素M1的交叉反应率为91.3%。单链抗体检测黄曲霉毒素M2的交叉反应率为45%。单链抗体检测黄曲霉毒素B2的交叉反应率为95%。单链抗体检测黄曲霉毒素G1的交叉反应率为136%。单链抗体检测黄曲霉毒素G2的交叉反应率为50%。满足黄曲霉总量检测的要求。The cross-reactivity rate of scFv to detect aflatoxin M 1 was 91.3%. The cross-reactivity rate of scFv to detect aflatoxin M2 was 45%. The cross-reactivity rate of scFv to detect aflatoxin B2 was 95%. The cross-reactivity rate of single chain antibody to detect aflatoxin G 1 was 136%. The cross-reactivity rate of scFv to detect aflatoxin G2 was 50%. It meets the requirements for the detection of the total amount of Aspergillus flavus.
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