Embodiment
Following embodiment is convenient to understand better the present invention, but does not limit the present invention.Experimental technique in following embodiment, if no special instructions, is ordinary method.Test materials used in following embodiment, if no special instructions, is and purchases available from routine biochemistry reagent shop.Quantitative test in following examples, all arranges and repeats experiment, results averaged for three times." h " in this patent all represents hour." min " in this patent all represents minute.
Subtilis (Bacillus subtilis) 9407: and the preservation separated with microecology laboratory by China Agricultural University's biocontrol of plant disease, public Ke Cong China Agricultural University obtains; Reference: round, Fu Xuechi, Chen Xinyi, Wang Qi. the control of genus bacillus biological prevention and control agent to apple disease. Plant Pathology .2011.41 (ZK): 135-140.
Shuttle vectors pBE2(structural representation is shown in Fig. 1): public Ke Cong China Agricultural University obtains; Reference: Tian Tao, QiXue Chen, Wang Qi, Mei Ruhong. genus bacillus Green Fluorescent Protein and the pre-test of surely growing at wheat body surface thereof. Plant Pathology .2004.34 (4): 346-351.
Shuttle vectors pS4GFP(genus bacillus and shuttle vehicle are transformed and are obtained on pGFP4412 plasmid basis, and pGFP4412 plasmid is transformed and obtained on shuttle vectors pBE2 basis): public Ke Cong China Agricultural University obtains; Reference: Fan Xiaojing, Qiu Sixin, Wu little Ping, Hong Yongcong, Cai Xueqing, Hu Fangping. labeled with green fluorescent protein gene endophytic Bacillus subtilis. application and environmental organism journal .2007.13 (4): 530-534.
Shuttle vectors pMarA(genus bacillus and shuttle vehicle, structural representation is shown in Fig. 3): public Ke Cong China Agricultural University obtains; Reference: Yoann Le Breton, Nrusingh Prasad Mohapatra, W.G.Haldenwang.In Vivo Random Mutagenesis of Bacillus subtilis by Use of TnYLB-1, a mariner-Based Transposon.Applied and Environmental Microbiology.2006.72 (1): 327-333..
The preparation method of LB liquid nutrient medium (pH7.2): 10g Tryptones, 5g yeast extract, 10g sodium-chlor and distilled water are fully mixed and be settled to 1L with distilled water; 121 ℃ of high-temperature sterilization 20min.
The preparation method of LB solid medium (pH7.2): 10g peptone, 5g yeast extract, 10g sodium-chlor, 15g agar powder and distilled water are fully mixed and be settled to 1L with distilled water; 121 ℃ of high-temperature sterilization 20min.
The preparation method of 5 * inorganic salt mother liquor (pH7.0): 10g ammonium sulfate, 74g dipotassium hydrogen phosphate, 9.5g trisodium citrate and 1.0g bitter salt are dissolved with distilled water and be settled to 1L; 121 ℃ of high-temperature sterilization 20min.
The preparation method of 20% glucose solution: 20g glucose is dissolved with distilled water and be settled to 100mL; With 0.22 μ m biofilter filtration sterilization.
The preparation method of 2% casein hydrolysate solution: 2g casein hydrolysate (Casamino acids) is dissolved with distilled water and be settled to 100mL, with 0.22 μ m biofilter filtration sterilization.
The preparation method of HEPES damping fluid (1mM, pH7.0): 0.238g HEPES is dissolved with distilled water and be settled to 1L; With 0.22 μ m biofilter filtration sterilization, be stored in 4 ℃.
The preparation method of HEPES glycerine damping fluid (1mM, pH7.0): 0.238g HEPES pressed powder, 100mL glycerine and distilled water are fully mixed and be settled to 1L with distilled water; With 0.22 μ m biofilter filtration sterilization, be stored in 4 ℃.
The conversion of embodiment 1, wild-type subtilis
One, the preparation of growth medium and inducing culture
The preparation method of growth medium (1L): 5 * inorganic salt mother liquor, 20% glucose solution, 2% casein hydrolysate solution and distilled water are mixed, obtain growth medium; The solvent of growth medium is distilled water, and solute and concentration thereof are as follows: ammonium sulfate 2g/L, dipotassium hydrogen phosphate 14.8g/L, trisodium citrate 1.9g/L, magnesium sulfate 0.098g/L, glucose 5g/L, casein hydrolysate 0.2g/L.
The preparation method of inducing culture (1L): 5 * inorganic salt mother liquor, 20% glucose solution and distilled water are mixed, obtain inducing culture; The solvent of inducing culture is distilled water, and solute and concentration thereof are as follows: ammonium sulfate 2g/L, dipotassium hydrogen phosphate 14.8g/L, trisodium citrate 1.9g/L, magnesium sulfate 0.098g/L, glucose 5g/L.
Two, the preparation of competent cell
1, take out the subtilis 9407 preserving in-80 ℃ of refrigerators, on LB solid medium, activate.
2, with the single bacterium colony after the activation of sterilizing toothpick picking, be inoculated in 5mL growth medium 37 ℃, 180r/min shaking culture (vibration radius is 12mm, and instrument model is QDZ5-HZS-H) 10h.
3, the bacterium liquid of getting 2mL step 2 is inoculated in that in 15mL growth medium, (starting point concentration of subtilis 9407 is 5 * 10
7cFU/mL), 37 ℃, 180r/min shaking culture (vibration radius is 12mm, and instrument model is QDZ5-HZS-H) 3h.
4, the culture system of 1 parts by volume completing steps 3 and 1 parts by volume inducing culture are mixed to 37 ℃, 180r/min shaking culture (vibration radius is 12mm, and instrument model is QDZ5-HZS-H) 1.5h.
5, by the culture system ice bath 30min of completing steps 4, then add in the 50mL centrifuge tube of 4 ℃ of precoolings, 4 ℃, 5000r/min are centrifugal, and (centrifugal radius is 7.07cm, instrument model is Himac CR22e, Japan Hitachi company product) 10min, abandons supernatant, collecting cell.
6, the cell obtaining by liquid-transfering gun compressing cleaning step 5 with the distilled water of 4 ℃ of precoolings of 30mL, 4 ℃, 5000r/min centrifugal (centrifugal radius is 7.07cm, and instrument model is Himac CR22e, Japanese Hitachi company product) 10min, abandon supernatant, collecting cell.
7, the cell obtaining by liquid-transfering gun compressing cleaning step 6 with the distilled water of 4 ℃ of precoolings of 30mL, 4 ℃, 5000r/min centrifugal (centrifugal radius is 7.07cm, and instrument model is Himac CR22e, Japanese Hitachi company product) 10min, abandon supernatant, collecting cell.
8, the cell obtaining by liquid-transfering gun compressing cleaning step 7 with the 30mL HEPES damping fluid of 4 ℃ of precoolings, 4 ℃, 5000r/min centrifugal (centrifugal radius is 7.07cm, and instrument model is Himac CR22e, Japanese Hitachi company product) 10min, abandon supernatant, collecting cell.
9, the cell obtaining by the resuspended step 8 of HEPES glycerine damping fluid of 4 ℃ of precoolings of 2mL, is sub-packed in that to drop at once liquid nitrogen middling speed after the 1.5mL centrifuge tube (200 μ L/ pipe) of 4 ℃ of precoolings cold.Every pipe is containing having an appointment 0.31 * 10
9cFU competent cell.
Above-mentioned steps 5 to 9 is all carried out on ice.
Three, electric shock transforms
1, get 5 μ g shuttle vectors pBE2, add in the competent cell that 1 pipe step 2 obtains, on ice, by liquid-transfering gun, slightly tell to inhale shuttle vectors pBE2 and competent cell are fully mixed, ice bath 30min.
2, the system of completing steps 1 is transferred in the electric shock cup of precooling on ice (2mm), with BioRad Gene PulserXcell electroporation apparatus, carries out pulse electric shock (resistance 200 Ω, electric capacity 25 μ F, voltage 1.2kV).
3,, after completing steps 2, to the LB liquid nutrient medium that adds 37 ℃ of preheatings of 800 μ L in electric shock cup, by liquid-transfering gun, slightly tell persorption even immediately.
4, after completing steps 3, by the whole sucking-offs of bacterium liquid in electric shock cup to centrifuge tube, 37 ℃, 150r/min shaking culture (vibration radius is 12mm, and instrument model is QDZ5-HZS-H) 3h.
5, the culture system of completing steps 4 is coated containing on the LB solid medium of 50 μ g/mL kantlex to 37 ℃ of standing cultivations.
Four, the checking of changing effect
The form single bacterium colony close with subtilis 9407 of 1, growing on the flat board of random picking step 3, carrying out purifying cultivation containing on the LB solid medium of 50 μ g/mL kantlex, obtains the bacterial strain of 8 strain pure cultures altogether.
The bacterial strain of the pure culture 2, step 2 being obtained is containing in the LB liquid nutrient medium of 50 μ g/mL kantlex, and 37 ℃, 180r/min shaking culture (vibration radius is 12mm, and instrument model is QDZ5-HZS-H) spend the night.
3, get the culture system of completing steps 2, a part is extracted genomic dna and is identified that 16S rDNA fragment (adopts the primer of 63F and 1387R composition to carry out pcr amplification, then pcr amplification product checked order; 63F:5 '-CAGGCCTAACACATGCAAGTC-3 '; 1387R:5 '-GGGCGGWGTGTACAAGGC-3 '), another part extracts plasmid and carries out single endonuclease digestion evaluation by restriction enzyme EcoR I, if 16S rDNA sequencing fragment is consistent with 16S rDNA fragment sequence (as shown in the sequence 1 of sequence table) the EcoR I single endonuclease digestion qualification result consistent and EcoR I single endonuclease digestion qualification result and shuttle vectors pBE2 of subtilis 9407, this bacterial strain is successfully shuttle vectors pBE2 to be imported to the recombinant bacterium of subtilis 9407.Part EcoR I single endonuclease digestion the results are shown in Figure 2.
The 8 strain pure culture bacterial strains that step 1 obtains are the recombinant bacterium that successfully shuttle vectors pBE2 is imported to subtilis 9407, and transformation efficiency is 100%.
The conversion of embodiment 2, wild-type subtilis
One, the preparation of growth medium and inducing culture
The preparation method of growth medium (1L): 5 * inorganic salt mother liquor, 20% glucose solution, 2% casein hydrolysate solution and distilled water are mixed, obtain growth medium; The solvent of growth medium is distilled water, and solute and concentration thereof are as follows: ammonium sulfate 1.8g/L, dipotassium hydrogen phosphate 14g/L, trisodium citrate 1.5g/L, magnesium sulfate 0.09g/L, glucose 4.8g/L, casein hydrolysate 0.18g/L.
The preparation method of inducing culture (1L): 5 * inorganic salt mother liquor, 20% glucose solution and distilled water are mixed, obtain inducing culture; The solvent of inducing culture is distilled water, and solute and concentration thereof are as follows: ammonium sulfate 1.8g/L, dipotassium hydrogen phosphate 14g/L, trisodium citrate 1.5g/L, magnesium sulfate 0.09g/L, glucose 4.8g/L.
Two, the preparation of competent cell
1, with 1 of the step 2 of embodiment 1.
2, with the single bacterium colony after the activation of sterilizing toothpick picking, be inoculated in 5mL growth medium 30 ℃, 150r/min shaking culture (vibration radius is 12mm, and instrument model is QDZ5-HZS-H) 8h.
3, the bacterium liquid of getting 2mL step 2 is inoculated in that in 15mL growth medium, (starting point concentration of subtilis 9407 is 1.8 * 10
7cFU/mL), 35 ℃, 150r/min shaking culture (vibration radius is 12mm, and instrument model is QDZ5-HZS-H) 2h.
4, the culture system of 1 parts by volume completing steps 3 and 1.2 parts by volume inducing cultures are mixed to 35 ℃, 150r/min shaking culture (vibration radius is 12mm, and instrument model is QDZ5-HZS-H) 3.5h.
5, with 5 of the step 2 of embodiment 1.
6, with 6 of the step 2 of embodiment 1.
7, with 7 of the step 2 of embodiment 1.
8, with 8 of the step 2 of embodiment 1.
9, with 9 of the step 2 of embodiment 1.Every pipe is containing having an appointment 0.2 * 10
9cFU competent cell.
Above-mentioned steps 5 to 9 is all carried out on ice.
Three, electric shock transforms
1, get 2 μ g shuttle vectors pMarA, add in the competent cell that 1 pipe step 2 obtains, on ice, by liquid-transfering gun, slightly tell to inhale shuttle vectors pMarA and competent cell are fully mixed, ice bath 30min.
2, the system of completing steps 1 is transferred in the electric shock cup of precooling on ice (2mm), with BioRad Gene Pulser Xcell electroporation apparatus, carries out pulse electric shock (resistance 200 Ω, electric capacity 25 μ F, voltage 1.8kV).
3,, after completing steps 2, to the LB liquid nutrient medium that adds 30 ℃ of preheatings of 700 μ L in electric shock cup, by liquid-transfering gun, slightly tell persorption even immediately.
4, after completing steps 3, by the whole sucking-offs of bacterium liquid in electric shock cup to centrifuge tube, 30 ℃, 150r/min shaking culture (vibration radius is 12mm, and instrument model is QDZ5-HZS-H) 3h.
5, the culture system of completing steps 4 is coated containing on the LB solid medium of 50 μ g/mL kantlex to 30 ℃ of standing cultivations.
Four, the checking of changing effect
The form single bacterium colony close with subtilis 9407 of 1, growing on the flat board of random picking step 3, carrying out purifying cultivation containing on the LB solid medium of 50 μ g/mL kantlex, obtains the bacterial strain of 8 strain pure cultures altogether.
The bacterial strain of the pure culture 2, step 2 being obtained is containing in the LB liquid nutrient medium of 50 μ g/mL kantlex, and 37 ℃, 180r/min shaking culture (vibration radius is 12mm, and instrument model is QDZ5-HZS-H) spend the night.
3, get the culture system of completing steps 2, a part is extracted genomic dna and is identified that 16S rDNA fragment (adopts the primer of 63F and 1387R composition to carry out pcr amplification, then pcr amplification product checked order, 63F:5 '-CAGGCCTAACACATGCAAGTC-3 ', 1387R:5 '-GGGCGGWGTGTACAAGGC-3 '), another part extracts plasmid and uses respectively restriction enzyme Pst I, Kpn I and EcoR I are carried out single endonuclease digestion evaluation, if the consistent and Pst I of 16S rDNA fragment sequence (as shown in the sequence 1 of sequence table) of 16SrDNA sequencing fragment and subtilis 9407, Kpn I and EcoR I single endonuclease digestion qualification result all with the Pst I of shuttle vectors pMarA, Kppn I is consistent with EcoR I single endonuclease digestion qualification result, this bacterial strain is successfully shuttle vectors pMarA to be imported to the recombinant bacterium of subtilis 9407.The Pst I of certain plasmid, Kppn I and EcoR I single endonuclease digestion the results are shown in Figure 4.
In the 8 strain pure culture bacterial strains that step 1 obtains, 6 strains are successfully shuttle vectors pMarA to be imported to the recombinant bacterium of subtilis 9407, and transformation efficiency is 75%.
The conversion of embodiment 3, wild-type subtilis
One, the preparation of growth medium and inducing culture
The preparation method of growth medium (1L): 5 * inorganic salt mother liquor, 20% glucose solution, 2% casein hydrolysate solution and distilled water are mixed, obtain growth medium; The solvent of growth medium is distilled water, and solute and concentration thereof are as follows: ammonium sulfate 2.2g/L, dipotassium hydrogen phosphate 16g/L, trisodium citrate 2.5g/L, magnesium sulfate 0.1g/L, glucose 5.2g/L, casein hydrolysate 0.22g/L.
The preparation method of inducing culture (1L): 5 * inorganic salt mother liquor, 20% glucose solution and distilled water are mixed, obtain inducing culture; The solvent of inducing culture is distilled water, and solute and concentration thereof are as follows: ammonium sulfate 2.2g/L, dipotassium hydrogen phosphate 16g/L, trisodium citrate 2.5g/L, magnesium sulfate 0.1g/L, glucose 5.2g/L.
Two, the preparation of competent cell
1, with 1 of the step 2 of embodiment 1.
2, with the single bacterium colony after the activation of sterilizing toothpick picking, be inoculated in 5mL growth medium 37 ℃, 220r/min shaking culture (vibration radius is 12mm, and instrument model is QDZ5-HZS-H) 12h.
3, the bacterium liquid of getting 2mL step 2 is inoculated in that in 15mL growth medium, (starting point concentration of subtilis 9407 is 7.7 * 10
7cFU/mL), 36 ℃, 220r/min shaking culture (vibration radius is 12mm, and instrument model is QDZ5-HZS-H) 3.5h.
4, the culture system of 1 parts by volume completing steps 3 and 0.8 parts by volume inducing culture are mixed to 36 ℃, 220r/min shaking culture (vibration radius is 12mm, and instrument model is QDZ5-HZS-H) 3h.
5, with 5 of the step 2 of embodiment 1.
6, with 6 of the step 2 of embodiment 1.
7, with 7 of the step 2 of embodiment 1.
8, with 8 of the step 2 of embodiment 1.
9, with 9 of the step 2 of embodiment 1.Every pipe is containing having an appointment 0.49 * 10
9cFU competent cell.
Above-mentioned steps 5 to 9 is all carried out on ice.
Three, electric shock transforms
1, get 100ng shuttle vectors pS4GFP, add in the competent cell that 1 pipe step 2 obtains, on ice, by liquid-transfering gun, slightly tell to inhale shuttle vectors pS4GFP and competent cell are fully mixed, ice bath 30min.
2, the system of completing steps 1 is transferred in the electric shock cup of precooling on ice (2mm), with BioRad Gene Pulser Xcell electroporation apparatus, carries out pulse electric shock (resistance 200 Ω, electric capacity 25 μ F, voltage 1.5kV).
3,, after completing steps 2, to the LB liquid nutrient medium that adds 37 ℃ of preheatings of 1000 μ L in electric shock cup, by liquid-transfering gun, slightly tell persorption even immediately.
4, after completing steps 3, by the whole sucking-offs of bacterium liquid in electric shock cup to centrifuge tube, 37 ℃, 150r/min shaking culture (vibration radius is 12mm, and instrument model is QDZ5-HZS-H) 3h.
5, the culture system of completing steps 4 is coated containing on the LB solid medium of 50 μ g/mL kantlex to 37 ℃ of standing cultivations.
Four, the checking of changing effect
The form single bacterium colony close with subtilis 9407 of 1, growing on the flat board of random picking step 3, carrying out purifying cultivation containing on the LB solid medium of 50 μ g/mL kantlex, obtains the bacterial strain of 16 strain pure cultures altogether.
2, the bacterial strain of pure culture is carried out to fluorescent microscope detection, can send the positive bacterial strain of bacterial strain of green fluorescence, obtain altogether 12 strain positive strains, partial results is shown in Fig. 5, can observe bacterial strain and send stronger fluorescence.
3, get the positive strain that step 2 obtains, containing in the LB liquid nutrient medium of 50 μ g/mL kantlex, 37 ℃, 180r/min shaking culture (vibration radius is 12mm, and instrument model is QDZ5-HZS-H) spend the night.
4, get the culture system of completing steps 3, a part is extracted genomic dna and is identified that 16S rDNA fragment (adopts the primer of 63F and 1387R composition to carry out pcr amplification, then pcr amplification product checked order, 63F:5 '-CAGGCCTAACACATGCAAGTC-3 ', 1387R:5 '-GGGCGGWGTGTACAAGGC-3 '), another part extracts plasmid and carries out respectively EcoR I single endonuclease digestion and the evaluation of EcoR I/Hind III double digestion, if the 16S rDNA fragment sequence (as shown in the sequence 1 of sequence table) of 16S rDNA sequencing fragment and subtilis 9407 is consistent and EcoR I single endonuclease digestion and EcoR I/Hind III double digestion qualification result all consistent with EcoR I single endonuclease digestion and the EcoR I/Hind III double digestion qualification result of shuttle vectors pS4GFP, this bacterial strain is successfully shuttle vectors pS4GFP to be imported to the recombinant bacterium of subtilis 9407.The EcoR I single endonuclease digestion of part plasmid and EcoR I/Hind III double digestion the results are shown in Figure 6.
In the 16 strain pure culture bacterial strains that step 1 obtains, 12 strains are successfully shuttle vectors pS4GFP to be imported to the recombinant bacterium of subtilis 9407, and transformation efficiency is 75% (note: the pure culture bacterial strain that can send green fluorescence under 12 strain fluorescent microscopes is all accredited as target recombinant bacterium).
The conversion of comparative example 1, wild-type subtilis
One, the preparation of growth medium and inducing culture
Step 1 with embodiment 1.
Two, the preparation of competent cell
Step 2 with embodiment 1.
Three, electric shock transforms
Adopt respectively the voltage of 1.0kV and 2.0kV, other is all with the step 3 of embodiment 1.
Four, the checking of changing effect
Step 4 with embodiment 1.
While adopting the voltage of 1.0kV, step 1 obtains 5 strain pure culture bacterial strains, and wherein only having 1 strain is successfully shuttle vectors pBE2 to be imported to the recombinant bacterium of subtilis 9407, and transformation efficiency is 20%.
While adopting the voltage of 2.0kV, step 1 obtains 5 strain pure culture bacterial strains, and wherein only having 1 strain is successfully shuttle vectors pBE2 to be imported to the recombinant bacterium of subtilis 9407, and transformation efficiency is 20%.
The conversion of comparative example 2, wild-type subtilis
One, the preparation of growth medium and inducing culture
Step 1 with embodiment 1.
Two, the preparation of competent cell
Step 2 with embodiment 1.
Three, transform
1, get 5 μ g shuttle vectors pBE2, add in the competent cell that 1 pipe step 2 obtains, on ice, by liquid-transfering gun, slightly tell to inhale pBE2 plasmid and competent cell are fully mixed, ice bath 30min.
2, after completing steps 1, the system of step 1 is transferred in the electric shock cup of precooling on ice (2mm), to the LB liquid nutrient medium that adds 37 ℃ of preheatings of 800 μ L in electric shock cup, by liquid-transfering gun, slightly tells persorption even immediately.
3, after completing steps 2, by the whole sucking-offs of bacterium liquid in electric shock cup to centrifuge tube, 37 ℃, 150r/min shaking culture (vibration radius is 12mm, and instrument model is QDZ5-HZS-H) 3h.
4, the culture system of completing steps 3 is coated containing on the LB solid medium of 50 μ g/mL kantlex to 37 ℃ of standing cultivations.
Four, the checking of changing effect
Step 4 with embodiment 1.
Step 1 does not obtain any pure culture bacterial strain, there is no successfully shuttle vectors pBE2 to be imported the recombinant bacterium of subtilis 9407, and transformation efficiency is 0%.