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CN102618528A - Deleting system for long fragments in genome based on TALEN (transcription activator-like effector Nuclease) and ssODNs (single stranded oligonucleotides) and application thereof - Google Patents

Deleting system for long fragments in genome based on TALEN (transcription activator-like effector Nuclease) and ssODNs (single stranded oligonucleotides) and application thereof Download PDF

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CN102618528A
CN102618528A CN2012100950486A CN201210095048A CN102618528A CN 102618528 A CN102618528 A CN 102618528A CN 2012100950486 A CN2012100950486 A CN 2012100950486A CN 201210095048 A CN201210095048 A CN 201210095048A CN 102618528 A CN102618528 A CN 102618528A
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silkworm
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CN102618528B (en
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马三垣
夏庆友
张圣棂
徐汉福
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Abstract

本发明公开了基于TALEN和ssODNs的基因组长片段删除系统,由剪切目的基因靶序列的转录激活子样效应因子核酸酶TALEN和单链寡核苷酸ssODNs组成;该系统能够准确识别结构为T(Nn)A的靶序列,并在基因组中实现长片段删除,还公开了基因组长片段删除系统的应用,具有删除效率高,彻底改变基因组遗传信息,获得遗传变异大的品种,为育种提供丰富的遗传资源。

Figure 201210095048

The invention discloses a genome long fragment deletion system based on TALEN and ssODNs, which is composed of a transcriptional activator-like effector nuclease TALEN and single-stranded oligonucleotide ssODNs that cut the target sequence of the target gene; the system can accurately identify the structure as T The target sequence of (Nn)A, and long-segment deletion in the genome, also discloses the application of the genome long-segment deletion system, which has high deletion efficiency, completely changes the genetic information of the genome, obtains varieties with large genetic variation, and provides abundant resources for breeding of genetic resources.

Figure 201210095048

Description

基于TALEN和ssODNs的基因组长片段删除系统及其应用Genome Long Fragment Deletion System Based on TALEN and ssODNs and Its Application

技术领域                         Technical Fields

本发明涉及生物技术领域,特别是涉及基于TALEN和ssODNs的基因组长片段删除系统,还涉及基因组长片段删除系统的应用。 The invention relates to the field of biotechnology, in particular to a long genome fragment deletion system based on TALEN and ssODNs, and also relates to the application of the long genome fragment deletion system.

背景技术 Background technique

家蚕是重要的经济昆虫和鳞翅目昆虫模式生物,在我国已经有5000多年的饲养和驯化历史。蚕丝业在历史上一直与农并茂,为中华民族经济的发展和文化的弘扬都做出了巨大贡献。蚕丝拥有雍容典雅的光泽、轻盈舒适的触感、良好的衣料悬垂性和曲线性、适中的吸水性以及对人体肌肤的亲和性等固有的优良特性,长久以来都深受广大消费者的喜爱,蚕丝也因此而被誉为“纤维皇后”。目前我国丝绸工业年总产值达1350亿元,占纺织工业总产值的10%以上;茧丝产量和出口量分别占世界总额的70%和80%以上,年创汇超过50亿美元,是在国际市场上处于绝对优势的特色产业。全国共有种桑养蚕农户2000多万户,遍布20余个省区。蚕业是目前我国农村经济中的重要组成部分,其年出口创汇额在农产品中位居前列,是农民收入的重要来源。蚕丝产业在解决“三农”问题,特别是增加农民收入、调整农村产业结构上发挥着越来越重要的作用。  Bombyx mori is an important economic insect and a model organism of Lepidoptera. It has been bred and domesticated for more than 5,000 years in my country. The silk industry has always been in harmony with agriculture in history, and has made great contributions to the development of the Chinese nation's economy and the promotion of culture. Silk has inherent excellent characteristics such as graceful and elegant luster, light and comfortable touch, good drapability and curve of clothing materials, moderate water absorption and affinity to human skin, etc., and has been loved by consumers for a long time. Silk is also known as the "fiber queen" for this reason. At present, the total annual output value of my country's silk industry has reached 135 billion yuan, accounting for more than 10% of the total output value of the textile industry; cocoon silk production and export volume accounted for more than 70% and 80% of the world's total, and the annual foreign exchange earnings exceeded 5 billion US dollars, which is among the best in the world. A characteristic industry with an absolute advantage in the market. There are more than 20 million farmers growing mulberry and sericulture across the country, covering more than 20 provinces and autonomous regions. Sericulture is an important part of my country's rural economy, and its annual foreign exchange earnings from exports rank among the top among agricultural products, and it is an important source of farmers' income. The silk industry is playing an increasingly important role in solving the "three rural" issues, especially in increasing farmers' income and adjusting the rural industrial structure. the

然而,作为一个古老的传统产业,蚕桑丝绸生产技术与水平最近60年来都处于一个平台期。蚕品种的强健性、绢丝品质、产量等主要经济性状差等品种资源问题一直没有取得重大的突破,蚕丝服装易发黄、变皱等固有缺陷没有得到根本的解决。品种资源更新远远跟不上生产需要,蚕丝业整体生产效益低下。这主要是因为:1)经过上百年的挖掘,基于传统育种手段的增产潜力已经发挥到极致,加之自然条件的特殊性和局限性,目前已很难突破品种资源本身的局限。现存的家蚕品种虽然种类和数量颇多,但是其遗传背景单一,相互之间的经济性状和生物学性状并没有显著的差异。家蚕品种经过百年更迭,在经济性状和生物学性状上都没有显著的改进。2)作为纺织纤维,蚕丝因其价格昂贵使得众多消费者望而止步,加之蚕丝具有易发黄、起皱的缺点,使其在各种纺织纤维中并不占有很大的市场份额。在蚕丝产业几乎停滞不前的近几十年中,棉、毛等纺织纤维的研究和利用进展良好,各种人造纤维异军突起,对蚕丝产业造成了比较大的冲击。3)长久以来,人类驯化和饲养家蚕的主要目的是缫丝织绸,所以现存的家蚕品种几乎都是千篇一律的多丝量品种,其茧丝的成分和特性基本上没有什么区别。在蚕业科技日新月异的今天,蚕丝越来越多的作为一种多功能的生物材料而被重新认识。  However, as an ancient traditional industry, the technology and level of sericulture and silk production have been at a plateau in the past 60 years. Major breakthroughs have not been made in the problems of silkworm varieties such as robustness, silk quality, yield and other main economic traits, and the inherent defects of silk clothing such as easy yellowing and wrinkling have not been fundamentally resolved. The renewal of variety resources is far behind the production needs, and the overall production efficiency of the silk industry is low. This is mainly because: 1) After hundreds of years of excavation, the potential of increasing production based on traditional breeding methods has been maximized. In addition to the particularity and limitations of natural conditions, it is difficult to break through the limitations of the variety resources themselves. Although there are many types and quantities of silkworm species in existence, their genetic background is single, and there is no significant difference in economic and biological characters among them. Silkworm varieties have undergone a hundred years of change, and there has been no significant improvement in economic and biological traits. 2) As a textile fiber, silk is too expensive for many consumers. In addition, silk is prone to yellowing and wrinkling, so it does not occupy a large market share among various textile fibers. In the past few decades when the silk industry has almost stagnated, the research and utilization of textile fibers such as cotton and wool have progressed well, and various man-made fibers have sprung up, which has caused a relatively large impact on the silk industry. 3) For a long time, the main purpose of human domestication and breeding of silkworms is to reel and weave silk, so the existing silkworm varieties are almost all the same multi-filament varieties, and the composition and characteristics of their cocoon silk are basically the same. Today, with the rapid development of sericulture technology, silk has been re-recognized more and more as a multifunctional biological material. the

家蚕是研究鳞翅目昆虫的理想模式生物和重要的生物反应器。家蚕遗传学和生理学的早期研究成果为昆虫信息素、激素、解剖学、生理学和遗传学等方面的基础发现做出尤为重要的贡献;在家蚕基因组框架图、家蚕基因组精细图、家蚕基因芯片和遗传变异图相继解析之后,家蚕基因组学和功能基因组学研究在现代昆虫生物学研究中也起着举足轻重的作用。作为合成和分泌丝蛋白的唯一器官,家蚕丝腺是昆虫中蛋白质合成能力最强的生物器官,一头家蚕可生产纯蛋白质0.5g以上。无论是在基础研究,还是在药物、化妆品开发领域,提取或表达纯化的蛋白都扮演着极其重要的角色。饲养一头蚕的成本不足1角钱,却能吐0.5g的丝蛋白,而如果能用基因工程手段让家蚕吐出0.5g纯蛋白,这对于蚕丝产业、甚至生物产业都将产生革命性的推动作用。也正是这一奇特的生物学现象和应用前景吸引着众多生物学家自分子生物学发端以来就长期致力于家蚕丝蛋白的表达调控和家蚕生物反应器的开发。  The silkworm is an ideal model organism and an important bioreactor for studying Lepidoptera insects. The early research results of silkworm genetics and physiology have made particularly important contributions to the basic discoveries of insect pheromones, hormones, anatomy, physiology and genetics; in the silkworm genome framework map, silkworm genome fine map, silkworm gene chip and After the successive analysis of genetic variation maps, silkworm genomics and functional genomics research also plays a pivotal role in modern insect biology research. As the only organ for synthesizing and secreting silk protein, the silk gland of silkworm is the biological organ with the strongest protein synthesis ability among insects, and one silkworm can produce more than 0.5g of pure protein. Whether it is in basic research, or in the field of drug and cosmetic development, the extraction or expression of purified proteins plays an extremely important role. The cost of raising a silkworm is less than 1 dime, but it can spit out 0.5g of silk protein. If genetic engineering can be used to make the silkworm spit out 0.5g of pure protein, it will have a revolutionary role in promoting the silk industry and even the biological industry. . It is also this unique biological phenomenon and application prospects that have attracted many biologists to devote themselves to the expression regulation of silkworm silk protein and the development of silkworm bioreactors since the beginning of molecular biology. the

要突破传统育种的局限,获得品种选育的革命性突破;彻底克服蚕丝的固有缺陷,恢复蚕丝的纺织纤维市场中生机;开发新型多功能蚕丝材料,促进单一的蚕丝产业向更为广阔的非绢丝产业扩展,这些都是现代蚕业中亟须解决的关键问题。在分子农业时代,这些问题的解决离不开对家蚕重要经济性状相关基因的功能解析和遗传改造。要最大程度的发挥家蚕在鳞翅目昆虫研究中的模式作用,推动家蚕生物反应器的进一步开发和应用,也离不开转基因、基因组编辑和遗传改造等重要的分子工具。尽管转基因和RNAi等目前广泛应用的分子改良工具在家蚕中已经得到了较好的应用,但是转基因和RNAi并不能彻底删除基因组的中的核酸序列,而目前能直接对家蚕内源基因进行编辑和改造的技术还未见报道,更没有长片段基因组序列删除的相关报道。  It is necessary to break through the limitations of traditional breeding and obtain a revolutionary breakthrough in breed selection; completely overcome the inherent defects of silk and restore the vitality of silk in the textile fiber market; develop new multi-functional silk materials to promote the single silk industry to a wider African The expansion of the silk industry, these are key issues that need to be solved urgently in modern sericulture. In the era of molecular agriculture, the solution to these problems is inseparable from the functional analysis and genetic modification of genes related to important economic traits in silkworms. To maximize the model role of silkworm in the study of Lepidoptera insects and promote the further development and application of silkworm bioreactors, important molecular tools such as transgenic, genome editing and genetic modification are also inseparable. Although the currently widely used molecular improvement tools such as transgene and RNAi have been well applied in the silkworm, the transgene and RNAi cannot completely delete the nucleic acid sequence in the genome, but at present, the endogenous genes of the silkworm can be directly edited and The transformation technology has not been reported yet, and there is no relevant report on the deletion of long-segment genome sequences. the

发明内容 Contents of the invention

本发明的目的在于提供一种基于TALEN和ssODNs的基因组长片段删除系统及其应用和该删除系统的应用,利用该删除系统能够在基因组中删除目的基因长片段,获得遗传变异大的品种,为育种提供丰富的遗传资源。  The purpose of the present invention is to provide a long genome fragment deletion system based on TALEN and ssODNs and its application and the application of the deletion system, which can delete the long fragment of the target gene in the genome by using the deletion system, and obtain varieties with large genetic variation. Breeding provides a wealth of genetic resources. the

为实现上述目的,技术方案为:  In order to achieve the above purpose, the technical scheme is:

1.基于TALEN和ssODNs的基因组长片段删除系统,所述删除系统由剪切目的基因靶序列的转录激活子样效应因子核酸酶TALEN和单链寡核苷酸ssODNs组成,所述内切酶TALEN由剪切所述靶序列5’端的核酸酶TALEN-L和剪切所述靶序列3’端的核酸酶TALEN-R组成;所述单链寡核苷酸ssODNs由所述目的基因的靶序列的至少10个连续核苷酸和距离所述靶序列上游或下游至少1个碱基的至少10个连续核苷酸组成。  1. Genome long fragment deletion system based on TALEN and ssODNs, said deletion system is made up of transcriptional activator-like effector nuclease TALEN and single-stranded oligonucleotide ssODNs of shear target gene target sequence, said endonuclease TALEN It consists of a nuclease TALEN-L that cuts the 5' end of the target sequence and a nuclease TALEN-R that cuts the 3' end of the target sequence; the single-stranded oligonucleotide ssODNs consists of the target sequence of the target gene At least 10 consecutive nucleotides and at least 10 consecutive nucleotides at least 1 base upstream or downstream from the target sequence. the

进一步,所述靶序列为T(Nn)A的核苷酸序列,N为A,G,T和C中的任一碱基,n为24至65之间的任一数字。  Further, the target sequence is a nucleotide sequence of T(Nn)A, N is any base among A, G, T and C, and n is any number between 24 and 65. the

进一步,所述目的基因为家蚕油蚕基因BmBlos2,所述靶序列如SEQ ID NO.2所示核苷酸序列。  Furthermore, the target gene is the Bombyx mori gene BmBlos2 , and the target sequence is the nucleotide sequence shown in SEQ ID NO.2.

进一步,所述核酸酶TALEN-L如SEQ ID NO.3所示核苷酸编码的蛋白质;所述核酸酶TALEN-R如SEQ ID NO.4所示核苷酸编码的蛋白质。  Further, the nuclease TALEN-L is the protein encoded by the nucleotide shown in SEQ ID NO.3; the nuclease TALEN-R is the protein encoded by the nucleotide shown in SEQ ID NO.4. the

进一步,所述单链寡核苷酸ssODNs由所述靶序列的连续40个核苷酸和距离所述靶序列上游795个碱基的连续60个核苷酸组成。  Further, the single-stranded oligonucleotide ssODNs consists of 40 consecutive nucleotides of the target sequence and 60 consecutive nucleotides 795 bases upstream of the target sequence. the

进一步,所述单链寡核苷酸ssODNs如SEQ ID NO.17所示核苷酸。  Further, the single-stranded oligonucleotide ssODNs nucleotides shown in SEQ ID NO.17. the

2.所述基因组长片段删除系统在靶细胞基因组中改造目的基因的应用。  2. The application of the genome long fragment deletion system to modify the target gene in the target cell genome. the

进一步,所述靶细胞为家蚕卵细胞。  Further, the target cell is a silkworm egg cell. the

进一步,所述目的基因为家蚕油蚕基因BmBlos2。  Further, the target gene is the Bombyx mori oil silkworm gene BmBlos2 .

本发明的有益效果在于:本发明利用TALEN和ssODNs技术,通过TALEN具有特异剪切核酸靶序列的特点,在目的基因内部设计含有识别靶序列的蛋白质,并在识别靶序列蛋白质的上游设置有核定位信号NLS和核酸酶FokI,使目标蛋白能够定位于细胞核中,并识别靶序列处通过核酸酶FokI发生剪切;同时还利用单链寡核苷酸ssODNs对核酸序列具有修复功能,通过ssODNs与靶序列上游或下游序列结合,在基因组中完成删除和修复,最后能够实现长片段删除,其操作简单,能够实现对任意序列进行删除,还可以利用基因同源性原理同时实现多基因一次性删除,能够获得遗传变异大的品种,提供丰富的遗传资源。  The beneficial effect of the present invention is that: the present invention utilizes TALEN and ssODNs technology, and through TALEN has the characteristic of specifically cutting nucleic acid target sequences, a protein containing a recognition target sequence is designed inside the target gene, and a nucleus is provided upstream of the recognition target sequence protein. The positioning signal NLS and the nuclease FokI enable the target protein to be located in the nucleus, and the target sequence is recognized and cleaved by the nuclease FokI; at the same time, the single-stranded oligonucleotide ssODNs has the function of repairing the nucleic acid sequence, through ssODNs and Combining upstream or downstream sequences of the target sequence, deletion and repair are completed in the genome, and finally long fragments can be deleted. The operation is simple, and any sequence can be deleted. The principle of gene homology can also be used to simultaneously delete multiple genes at once. , can obtain varieties with large genetic variation, and provide abundant genetic resources. the

附图说明 Description of drawings

图1显示了家蚕油蚕基因BmBlos2的结构示意图和剪切目的基因靶序列的内切酶TALEN的识别位点,其中数字表示外显子或内含子的长度,ATG和TAA分别表示起始和终止密码子,下划线表示TALEN的识别模块。  Figure 1 shows the schematic diagram of the structure of the silkworm gene BmBlos2 and the recognition site of the endonuclease TALEN that cuts the target sequence of the target gene, where the numbers indicate the length of the exon or intron, ATG and TAA respectively indicate the start and Stop codons, underlines indicate recognition modules of TALENs.

图2显示了家蚕油蚕基因BmBlos2敲除以后家蚕的表型,其中WT表示野生型的家蚕个体,mutant表示突变体。  Fig. 2 shows the phenotype of the silkworm after the BmBlos2 gene BmBlos2 is knocked out, wherein WT represents a wild-type silkworm individual, and mutant represents a mutant.

图3显示了注射了B3后产生的突变序列,其中a图表示家蚕油蚕基因BmBlos2的部分结构示意图,上方的箭头表示PCR和测序引物的位置,b图表示来自与不同蛾圈的突变个体的序列,以“>”开头的标识表示不同的蛾圈编号,是“△”、“M”和“I”分别表示缺失、碱基替换和插入,其后的数字表示缺失、替换或插入的碱基数,“X”及后面的数字表示相应序列的条数,下划线的序列为TALEN的识别位点。  Figure 3 shows the mutant sequence produced after injection of B3, wherein a diagram represents a partial structural schematic diagram of the silkworm gene BmBlos2 of the silkworm, the upper arrow represents the position of PCR and sequencing primers, and diagram b represents the mutant individuals from different moth circles Sequences, marks beginning with ">" represent different moth circle numbers, "△", "M" and "I" represent deletions, base substitutions and insertions respectively, and the subsequent numbers represent the bases of deletions, substitutions or insertions The base number, "X" and the following numbers represent the number of corresponding sequences, and the underlined sequence is the recognition site of TALEN.

图4显示了家蚕油蚕基因BmBlos2的结构示意图和目的基因删除结果。其中a图显示了家蚕油蚕基因BmBlos2的结构示意图,黑线表示ssODNs的设计;b图显示了共注射后TALEN和ssODNs后的PCR结果,目的条带的大小为556bp,底部的数字表示突变的效率。  Fig. 4 shows a schematic diagram of the structure of the Bombyx mori gene BmBlos2 and the deletion result of the target gene. Figure a shows the schematic diagram of the structure of the silkworm gene BmBlos2 , the black line indicates the design of ssODNs; Figure b shows the PCR results after co-injection of TALEN and ssODNs, the size of the target band is 556bp, and the number at the bottom indicates the mutation efficiency.

具体实施方式:Detailed ways:

为了使本发明的目的、技术方案和优点更加清楚,下面将结合附图对本发明作进一步的详细描述。这些实施例仅用于说明本发明而不用于限制本发明的范围。实施例中未注明具体条件的实验方法,通常按照常规条件,例如分子克隆实验指南(第三版,J.萨姆布鲁克等著)中所述的条件,或按照制造厂商所建议的条件。 In order to make the purpose, technical solution and advantages of the present invention clearer, the present invention will be further described in detail below in conjunction with the accompanying drawings. These examples are only for illustrating the present invention and are not intended to limit the scope of the present invention. For the experimental methods not specified in the examples, the conventional conditions are generally followed, such as the conditions described in the Molecular Cloning Experiment Guide (Third Edition, J. Sambrook et al.), or the conditions suggested by the manufacturer.

实施例中使用的家蚕品种为“N4”,由中国西南大学家蚕基因资源库提供。  The silkworm variety used in the examples is "N4", provided by the Silkworm Gene Resource Bank of Southwest University of China. the

一、家蚕油蚕基因BmBlos2序列分析1. Sequence Analysis of BmBlos2 Gene of Bombyx mori

从silkDB数据库下载家蚕油蚕基因BmBlos2的序列(编号为BGIBMGA002101)。序列分析显示该基因包括四个长分别为180bp,131bp,112bp和608bp的外显子以及三个长分别为2465bp,663bp和2703bp的内含子,第一外显子包括125bp的非翻译区和55bp的编码区,其结构如图1所示。按照基因敲除的一般原则,该基因的第二和第三外显子为理想的靶标位点,本实施例以第二外显子和第三外显子为靶序列。 The sequence of the silkworm gene BmBlos2 (number BGIBMGA002101) was downloaded from the silkDB database. Sequence analysis showed that the gene included four exons with lengths of 180bp, 131bp, 112bp and 608bp and three introns with lengths of 2465bp, 663bp and 2703bp respectively. The first exon included an untranslated region of 125bp and The structure of the 55bp coding region is shown in Figure 1. According to the general principle of gene knockout, the second and third exons of the gene are ideal target sites, and the second and third exons are used as target sequences in this embodiment.

二、第三外显子TALEN序列的设计2. Design of the third exon TALEN sequence

根据家蚕油蚕基因BmBlos2的序列特征,我们选择第三外显子上的序列作为TALEN作用的靶序列,家蚕蚕油蚕基因BmBlos2第三外显子核苷酸序列如SEQ ID NO.1所示,根据TALEN原理将结构为T(Nn)A的核苷酸序列为TALEN识别靶序列,其中N为A,G,T和C中的任一碱基,n为24至65之间的任一数字。按照上述原理设计TALEN识别的靶位点为5’- tcaccaagtacgcagatcta aggagcctagccgcgaacctgaacaagaccctta-3’(SEQ ID NO.2),划线部分为TALEN识别模块,黑体部分表示间隔序列,其中5’端划线核苷酸序列为5’端识别序列,对应SEQ ID NO.2所示的1-20位核苷酸,3’端划线核苷酸序列为3’端识别序列,对应SEQ ID NO.2所示的36-54位核苷酸序列。分别将5’端识别序列和3’端识别序列按照A=NI,T=NG,G=NN,C=HD规律设计识别靶序列的蛋白质的可变序列,并在蛋白质上游偶联核定位信号NLS,下游偶联核酸酶FokI,分别得到由核定位信号NLS、识别5’端识别序列的蛋白质和核酸酶FokI依次串联组成的核酸酶TALEN-L和由核定位信号NLS、识别3’端识别序列的蛋白质和核酸酶FokI依次串联组成核酸酶TALEN-R。根据核酸酶TALEN-L和核酸酶TALEN-R的氨基酸序列设计编码核酸酶TALEN-L和核酸酶TALEN-R的核苷酸序列,编码核酸酶TALEN-L的核苷酸序列如SEQ ID NO.3所示,其中第82-102位核苷酸编码核定位信号NLS,第120-2826位核苷酸编码识别5’识别序列的蛋白质,第2833-3420位核苷酸编码内切核酸酶FokI,编码核酸酶TALEN-R的核苷酸序列如SEQ ID NO.4所示,其中第76-96位核苷酸编码核定位信号NLS,第114-2820位核苷酸编码识别3’识别序列的蛋白质,第2826-3414位核苷酸编码核酸酶FokI。 According to the sequence characteristics of the silkworm gene BmBlos2 of the silkworm, we selected the sequence on the third exon as the target sequence of the TALEN function, and the nucleotide sequence of the third exon of the silkworm gene BmBlos2 of the silkworm is shown in SEQ ID NO.1 , according to the TALEN principle, the nucleotide sequence with the structure T(Nn)A is the TALEN recognition target sequence, wherein N is any base in A, G, T and C, and n is any base between 24 and 65 number. According to the above principles, the target site for TALEN recognition is 5'- tcaccaagtacgcagatcta aggagcctagccgc g aacctgaacaagaccctta -3' (SEQ ID NO.2), the underlined part is the TALEN recognition module, the bold part indicates the spacer sequence, and the 5' end is underlined The nucleotide sequence is the 5' end recognition sequence, corresponding to 1-20 nucleotides shown in SEQ ID NO.2, and the 3' underlined nucleotide sequence is the 3' end recognition sequence, corresponding to SEQ ID NO.2 The 36-54 nucleotide sequence shown. The 5'-end recognition sequence and the 3'-end recognition sequence are respectively designed according to the rules of A=NI, T=NG, G=NN, C=HD to design the variable sequence of the protein that recognizes the target sequence, and couple the nuclear localization signal upstream of the protein NLS, the downstream coupling nuclease FokI, respectively, the nuclease TALEN-L composed of the nuclear localization signal NLS, the protein that recognizes the recognition sequence at the 5' end and the nuclease FokI in series, and the nuclease TALEN-L that is composed of the nuclear localization signal NLS and the recognition sequence at the 3' end The sequenced protein and the nuclease FokI are sequentially connected in series to form the nuclease TALEN-R. Design the nucleotide sequence encoding nuclease TALEN-L and nuclease TALEN-R according to the amino acid sequence of nuclease TALEN-L and nuclease TALEN-R, the nucleotide sequence of encoding nuclease TALEN-L is as SEQ ID NO. 3, wherein the 82-102 nucleotides encode the nuclear localization signal NLS, the 120-2826 nucleotides encode the protein that recognizes the 5' recognition sequence, and the 2833-3420 nucleotides encode the endonuclease FokI , the nucleotide sequence encoding the nuclease TALEN-R is shown in SEQ ID NO.4, wherein the 76th-96th nucleotides encode the nuclear localization signal NLS, and the 114th-2820th nucleotides encode the recognition 3' recognition sequence protein, the 2826-3414th nucleotides encode the nuclease FokI.

三、编码TALEN-L和TALEN-R的 mRNA的制备3. Preparation of mRNA encoding TALEN-L and TALEN-R

分别人工合成编码核酸酶TALEN-L和核酸酶TALEN-R的核苷酸序列(SEQ ID NO.3和SEQ ID NO.4),再用限制性内切酶KpnI和BamHI双酶切后连接经同样酶切的原核表达载体pET28a,然后转化大肠杆菌,并筛选阳性克隆,获得重组质粒对,命名为pET28a-B3L和pET28a-B3R。将所得重组质粒对分别用XhoⅠ酶切消化后用MessageMax T7 mRNA体外转录试剂盒(购自Epicentre)进行体外转录,体外转录条件为:在温度为37℃条件下孵育30分钟,加1μL DNA酶,再继续孵育15分钟。然后将反应液用Epicentre A-plus加尾试剂盒(购自Epicentre)进行加A反应,反应条件为:在温度为37℃条件下孵育30分钟,然后用MEGAClear试剂盒(购自Ambion)进行纯化,得编码核酸酶TALEN-L和核酸酶TALEN-R的 mRNA,将所得核酸酶TALEN-L的mRNA和核酸酶TALEN-R的mRNA混合物命名B3,于-80℃保存备用。 Nucleotide sequences (SEQ ID NO.3 and SEQ ID NO.4) encoding nuclease TALEN-L and nuclease TALEN-R were artificially synthesized respectively, and then ligated with restriction endonucleases KpnI and BamHI after double digestion. The same prokaryotic expression vector pET28a was digested, then transformed into Escherichia coli, and positive clones were screened to obtain a pair of recombinant plasmids, which were named pET28a-B3L and pET28a-B3R. The resulting recombinant plasmid pairs were digested with Xho I respectively, and then transcribed in vitro with the MessageMax T7 mRNA in vitro transcription kit (purchased from Epicentre). Continue to incubate for another 15 minutes. Then the reaction solution was added to the A-plus reaction using the Epicentre A-plus tailing kit (purchased from Epicentre), and the reaction conditions were: incubate at 37°C for 30 minutes, and then use the MEGAClear kit (purchased from Ambion) to purify , the mRNA encoding nuclease TALEN-L and nuclease TALEN-R was obtained, and the obtained mRNA mixture of nuclease TALEN-L and nuclease TALEN-R was named B3, and stored at -80°C for future use.

四、B3显微注射4. Microinjection of B3

选择多化性家蚕品种“N4”,在温度为25℃、相对湿度75%±5%、光周期为12小时光照+12小时黑暗的条件下中,用桑叶饲养。羽化后收集同时化蛾的雌雄蚕蛾,在温度为25℃、光强为50~155 μmol/m2/s的条件下交配4小时后拆对,并将雌蛾投放于上浆的蚕连纸上产卵,所得蚕卵直接用于显微注射。用浓度为700ng/μL的B3用显微注射仪(FemtoJet 5247 显微注射仪,购自Eppendorf)注射所得蚕卵中的521粒蚕卵,每粒蚕卵注射量约10nL。注射后的蚕卵用无毒胶水封住注射口,并用体积百分比为35%的甲醛蒸气中消毒5分钟,置于25℃、相对湿度为85%、光周期为12小时光照+12小时黑暗的环境中催青孵化,将孵化的G0代蚁蚕人工饲料收集饲养至化蛾。 The polymorphic silkworm variety "N4" was selected and raised with mulberry leaves under the conditions of a temperature of 25°C, a relative humidity of 75%±5%, and a photoperiod of 12 hours of light and 12 hours of darkness. After eclosion, collect the male and female silkworm moths that moth at the same time, and mate for 4 hours under the conditions of temperature at 25°C and light intensity of 50-155 μmol/m2/s. The obtained silkworm eggs were directly used for microinjection. A microinjector (FemtoJet 5247 microinjector, purchased from Eppendorf) was used to inject 521 silkworm eggs among the obtained silkworm eggs with B3 at a concentration of 700ng/μL, and the injection volume of each silkworm egg was about 10nL. The injected silkworm eggs were sealed with non-toxic glue at the injection port, sterilized with 35% formaldehyde vapor for 5 minutes, and placed in a room at 25°C, with a relative humidity of 85%, and a photoperiod of 12 hours of light + 12 hours of darkness. The green hatching is accelerated in the environment, and the hatched G0 generation ant silkworms are collected and raised with artificial feed until they become moths.

五、突变个体筛选5. Screening of Mutant Individuals

在521粒注射蚕卵中,经人工饲养获得126头五龄幼虫,其中28头表现出嵌合体的表型,如图2所示。将获得的126个G0代蚕蛾,通过自交或回交获得41蛾圈G1代蚕卵,将41个蛾圈催青并单独饲养至G1代三龄幼虫观察,在其中的6个蛾圈中发现277头具有表型为油蚕的家蚕突变体。 Among the 521 injected silkworm eggs, 126 fifth-instar larvae were obtained through artificial rearing, and 28 of them showed chimera phenotype, as shown in Figure 2. The 126 G0 generation silkworm moths obtained were self-crossed or backcrossed to obtain 41 moth circles G1 generation silkworm eggs, and the 41 moth circles were accelerated and raised separately to the third instar larvae of the G1 generation for observation. In 6 moth circles among them 277 silkworm mutants with the phenotype of oil silkworm were found.

六、可遗传突变个体的测序分析6. Sequencing Analysis of Individuals with Inheritable Mutations

选取表型为油蚕的家蚕突变体51个,提取基因组,选取选取突变位点附近序列设计PCR引物进行PCR扩增。PCR引物:上游引物为B3-F364:5’-tccaatttgagggcaatgctac-3’(SEQ ID NO.5),下游引物为B3-R315:5’-atttcaccacctcattcaactaagat-3’ (SEQ ID NO.6);PCR扩增条件为:94℃预变性4 min;94℃变性30s,59 ℃退火30s,72 ℃延伸45s,30个循环;72℃延伸10 min。同时选取突变位点附近序列设计测序引物,测序引物如SEQ ID NO.6所示。PCR产物经电泳检测、纯化,然后进行测序。测序结果表明所选取的51个家蚕突变个体在第三外显子靶序列处均发生了突变,突变包括变异、缺失或小片段的插入,测序结果如SEQ ID NO.7-16,部分结果如附图3所示。 Select 51 silkworm mutants whose phenotype is oily silkworm, extract the genome, and select the sequence near the mutation site to design PCR primers for PCR amplification. PCR primers: the upstream primer is B3-F364: 5'-tccaatttgagggcaatgctac-3' (SEQ ID NO.5), the downstream primer is B3-R315: 5'-atttcaccacctcattcaactaagat-3' (SEQ ID NO.6); PCR amplification The conditions were: pre-denaturation at 94°C for 4 min; 30 cycles of denaturation at 94°C for 30 s, annealing at 59°C for 30 s, extension at 72°C for 45 s, and extension at 72°C for 10 min. At the same time, the sequence near the mutation site was selected to design sequencing primers, and the sequencing primers are shown in SEQ ID NO.6. PCR products were detected by electrophoresis, purified, and then sequenced. The sequencing results showed that the selected 51 silkworm mutant individuals had mutations at the target sequence of the third exon, and the mutations included mutations, deletions, or insertions of small fragments. The sequencing results are shown in SEQ ID NO.7-16, and some results are shown in Shown in accompanying drawing 3.

七、ssODNs序列的设计与合成7. Design and synthesis of ssODNs sequence

根据第三外显子靶序列和删除片段上游序列即第二外显子,设计一条单链寡核苷酸(Single-stranded oligonucleotides,ssODNs),ssODNs由第三外显子靶序列的3’识别序列和距离3’识别序列上游792位的60个连续核苷酸组成,具体序列为:5’-tgtcaccgagctgttcgagtttcgaagtcctggatccacatgatcctgtgatcagtcggtgccgcgaacctgaacaagacccttaatgaatacaacgaga-3’(SEQ ID NO.17),其中1-60位核苷酸为删除片段上游序列和61-100位核苷酸为根据TALEN切割位点下游序列构成,下划线部分为转录激活子样效应因子核酸酶TALEN 的3’端识别位点。 Design a single-stranded oligonucleotide (Single-stranded oligonucleotides, ssODNs) based on the target sequence of the third exon and the upstream sequence of the deletion fragment, namely the second exon. ssODNs are recognized by the 3' of the target sequence of the third exon sequence and 60 consecutive nucleotides at 792 positions upstream from the 3' recognition sequence, the specific sequence is: 5'-tgtcaccgagctgttcgagtttcgaagtcctggatccacatgatcctgtgatcagtcggt gccgcgaacctgaacaagacccttaatgaatacaacgaga -3' (SEQ ID NO.17), in which 1-60 nucleotides are deletion fragments The upstream sequence and 61-100 nucleotides are constructed according to the downstream sequence of the TALEN cleavage site, and the underlined part is the 3' end recognition site of the transcription activator-like effector nuclease TALEN.

八、ssODNs和B3的显微共注射8. Microcoinjection of ssODNs and B3

利用上述制备蚕卵的方法制备蚕卵,取402粒蚕卵进行显微注射,具体为:用浓度为700ng/μL的B3与浓度为100mM的ssODNs按体积比为1:1混合,然后用显微注射仪(FemtoJet 5247 显微注射仪, Eppendorf)注射,每粒蚕卵注射量约10nL。注射后的蚕卵用无毒胶水封住注射口,并用体积百分比为35%的甲醛蒸气中消毒5分钟,然后置于25℃、相对湿度85%的高湿度环境中催青孵化,孵化得到61头G0代蚁蚕,经人工饲料收集共得到35头五龄蚕,其中1头表型为嵌合体(部分表皮表现出透明的表型,部分表皮为正常的乳白色),为突变体。提取所得嵌合突变体和20头表现正常的个体的基因组设计引物进行PCR扩增,PCR引物上游引物为5’-ttggtccagtaggtttgaagtaggt-3’(SEQ ID NO.18),下游引物如SEQ ID NO.10;PCR扩增条件为:94℃预变性4 min;94℃变性30s,59 ℃退火30s,72 ℃延伸45s,30个循环;72℃延伸10 min,PCR产物用1%琼脂糖凝胶电泳分析,检测所得PCR条带为556bp,与未发生突变的1351bp相比,目的基因中删除了795bp片段,由此可知,嵌合体表型的家蚕个体中发生了长片段删除,删除序列为目的基因在ssODNs的缺失部分,其比例为2.2%,结果如图4所示。 Silkworm eggs were prepared by using the above method for preparing silkworm eggs, and 402 silkworm eggs were taken for microinjection, specifically: B3 with a concentration of 700 ng/μL and ssODNs with a concentration of 100 mM were mixed at a volume ratio of 1:1, and then microinjected with a microscope. The microinjector (FemtoJet 5247 microinjector, Eppendorf) injected, and the injection volume of each silkworm egg was about 10nL. The injected silkworm eggs were sealed with non-toxic glue at the injection port, and sterilized with 35% formaldehyde vapor for 5 minutes, and then placed in a high-humidity environment at 25°C and 85% relative humidity for incubation, and 61 A total of 35 fifth-instar silkworms were collected from the first G0 generation of silkworms by artificial feed, and one of them was a chimera (part of the epidermis showed a transparent phenotype, and part of the epidermis was normal milky white), which was a mutant. Extract the genomes of the obtained chimeric mutants and 20 individuals with normal performance and design primers for PCR amplification. The upstream primer of the PCR primer is 5'-ttggtccagtaggtttgaagtaggt-3' (SEQ ID NO.18), and the downstream primer is such as SEQ ID NO.10 ;PCR amplification conditions were: 94°C pre-denaturation for 4 min; 30 cycles of denaturation at 94°C for 30 s, annealing at 59°C for 30 s, extension at 72°C for 45 s; extension at 72°C for 10 min, and PCR products were analyzed by 1% agarose gel electrophoresis , the detected PCR band was 556bp. Compared with the 1351bp without mutation, the 795bp fragment was deleted in the target gene. It can be seen that a long fragment deletion occurred in the silkworm individual of the chimera phenotype, and the deletion sequence was the target gene in For the missing part of ssODNs, its proportion is 2.2%, and the results are shown in Fig. 4.

最后说明的是,以上实施例仅用以说明本发明的技术方案而非限制,尽管通过参照本发明的优选实施例已经对本发明进行了描述,但本领域的普通技术人员应当理解,可以在形式上和细节上对其作出各种各样的改变,而不偏离所附权利要求书所限定的本发明的精神和范围。  Finally, it is noted that the above embodiments are only used to illustrate the technical solutions of the present invention and not to limit them. Although the present invention has been described with reference to the preferred embodiments of the present invention, those skilled in the art should understand that it can be described in the form Various changes may be made in matter and details thereof without departing from the spirit and scope of the invention as defined in the appended claims. the

<110>  西南大学 <110> Southwest University

<120>  基于TALEN和ssODNs的基因组长片段删除系统及其应用 <120> Genome Long Fragment Deletion System Based on TALEN and ssODNs and Its Application

<160>  18 <160> 18

  the

<210>  1 <210> 1

<211>  112 <211> 112

<212>  DNA <212> DNA

<213>  家蚕(Bombyx moriL.) <213> Silkworm ( Bombyx mori L.)

<220>  <220>

<223>  家蚕油蚕基因BmBlos2第三外显子核苷酸序列 <223> Nucleotide sequence of the third exon of BmBlos2 gene of Bombyx mori

<400>  1 <400> 1

gaacactaca tgctgcttga ggagatcaac agactcgcga tcaccaagta cgcagatcta   60 gaacactaca tgctgcttga ggagatcaac agactcgcga tcaccaagta cgcagatcta 60

aggagcctag ccgcgaacct gaacaagacc cttaatgaat acaacgagat gt          112 aggagcctag ccgcgaacct gaacaagacc cttaatgaat acaacgagat gt 112

  the

  the

<210>  2 <210> 2

<211>  54         <211> 54

<212>  DNA <212> DNA

<213>  家蚕(Bombyx moriL.) <213> Silkworm ( Bombyx mori L.)

<220>  <220>

<223>  第三外显子TALEN结合位点 <223> Exon 3 TALEN binding site

<400>  2 <400> 2

tcaccaagta cgcagatcta aggagcctag ccgcgaacct gaacaagacc ctta     54 tcaccaagta cgcagatcta aggagcctag ccgcgaacct gaacaagacc ctta 54

  the

<210>  3 <210> 3

<211>  3426 <211> 3426

<212>  DNA <212> DNA

<213>  人工序列 <213> Artificial sequence

<220>  <220>

<223>  编码TALEN-L核苷酸序列 <223> Nucleotide sequence encoding TALEN-L

<400>  3 <400> 3

atgagatctg actacaaaga ccatgacggt gattataaag atcatgacat cgattacaag   60  atgagatctg actacaaaga ccatgacggt gattataaag atcatgacat cgattacaag 60

gatgacgatg acaagatggc ccccaagaag aagaggaagg tgggcattca tggggtaccc  120  gatgacgatg acaagatggc ccccaagaag aagaggaagg tgggcattca tggggtaccc 120

atgatgagca gaaccagact ccccagccca ccagcgccct cgccagcgtt ttcggcaggc  180  atgatgagca gaaccagact ccccagccca ccagcgccct cgccagcgtt ttcggcaggc 180

agcttttcgg acttgttacg tcagtttgac ccaagcttat tcaacactag cctttttgat  240  agcttttcgg acttgttacg tcagtttgac ccaagcttat tcaacactag cctttttgat 240

tccctgcctc cattcggtgc tcaccataca gaagctgcca ctggagaatg ggacgaggtt  300  tccctgcctc cattcggtgc tcaccataca gaagctgcca ctggagaatg ggacgaggtt 300

caatccggac tgagggcagc agatgcacca ccacctacca tgcgtgtggc agttacggct  360  caatccggac tgagggcagc agatgcacca ccacctacca tgcgtgtggc agttacggct 360

gccaggccac cgagagctaa accagcacca agaaggcgtg cagcacaacc atcagacgct  420  gccaggccac cgagagctaa accagcacca agaaggcgtg cagcacaacc atcagacgct 420

tctccggctg cccaggtgga tctccgcacc ttaggttact cacaacagca acaggaaaaa  480  tctccggctg cccaggtgga tctccgcacc ttaggttact cacaacagca acaggaaaaa 480

attaagccga aagttcgttc tacagtcgcc caacaccatg aggcattggt gggacacggc  540  attaagccga aagttcgttc tacagtcgcc caacaccatg aggcattggt gggacacggc 540

tttactcacg cgcatatagt tgctctgtcg caacatccgg cagcgttggg aaccgtcgct  600  tttactcacg cgcatatagt tgctctgtcg caacatccgg cagcgttggg aaccgtcgct 600

gtaaagtatc aggacatgat cgctgccctc cctgaagcca cacacgaggc aattgtgggt  660  gtaaagtatc aggacatgat cgctgccctc cctgaagcca cacacgaggc aattgtgggt 660

gttggaaaac agtggtcagg tgctcgcgcc ttggaagcgc tgttgacagt ggctggagag  720  gttggaaaac agtggtcagg tgctcgcgcc ttggaagcgc tgttgacagt ggctggagag 720

ctccgtggtc cacctttaca acttgatacc ggacagctct taaagatcgc taaaaggggt  780  ctccgtggtc cacctttaca acttgatacc ggacagctct taaagatcgc taaaaggggt 780

ggagtcacgg cagtagaagc ggtgcacgct tggagaaacg cgttaacagg agctcccctg  840  ggagtcacgg cagtagaagc ggtgcacgct tggagaaacg cgttaacagg agctcccctg 840

aatttgactc ctgaacaagt ggttgcaatt gcgtcgcacg acggcggtaa acaagctctt  900  aatttgactc ctgaacaagt ggttgcaatt gcgtcgcacg acggcggtaa acaagctctt 900

gagaccgtac agaggcttct gccagtgttg tgccaagcac atggactcac gccagcacag  960  gagaccgtac agaggcttct gccagtgttg tgccaagcac atggactcac gccagcacag 960

gtcgtagcta tcgccagtaa tattggaggc aaacaagcgt tagaaacagt tcagagattg 1020  gtcgtagcta tcgccagtaa tattggaggc aaacaagcgt tagaaacagt tcagagattg 1020

ctccccgtct tatgtcaagc tcacggtctt actcctgacc aggtggttgc aatagcgtca 1080  ctccccgtct tatgtcaagc tcacggtctt actcctgacc aggtggttgc aatagcgtca 1080

catgatggtg gaaagcaagc tttggagacc gtacagcgct tacttccagt gctgtgccaa 1140  catgatggtg gaaagcaagc tttggagacc gtacagcgct tacttccagt gctgtgccaa 1140

gcgcacggat tgacgccggc tcaagttgta gctatcgcct ctcatgatgg cggtaaacaa 1200  gcgcacggat tgacgccggc tcaagttgta gctatcgcct ctcatgatgg cggtaaacaa 1200

gccctcgaaa cagttcagcg tctgttgccc gtcctctgtc aagcacacgg cttaactcct 1260  gccctcgaaa cagttcagcg tctgttgccc gtcctctgtc aagcacacgg cttaactcct 1260

gaacaggttg tcgcaatagc gagcaacatc ggaggcaagc aagcgctgga gaccgtacag 1320  gaacaggttg tcgcaatagc gagcaacatc ggaggcaagc aagcgctgga gaccgtacag 1320

aggctcttac cagtgctttg ccaagctcat ggtctgacgc cggaccaggt cgtagctatt 1380  aggctcttac cagtgctttg ccaagctcat ggtctgacgc cggaccaggt cgtagctatt 1380

gcctccaata taggtggaaa acaagccttg gagacagttc agagacttct gcccgtcttg 1440  gcctccaata taggtggaaa acaagccttg gagacagttc agagacttct gcccgtcttg 1440

tgtcaagcac acggactcac tcctgatcag gttgtcgcaa ttgcgtcgaa caatggcggt 1500  tgtcaagcac acggactcac tcctgatcag gttgtcgcaa ttgcgtcgaa caatggcggt 1500

aaacaagcgc tcgaaaccgt acagcgcttg ctcccagtgt tatgccaagc acatggcctt 1560  aaacaagcgc tcgaaaccgt acagcgcttg ctcccagtgt tatgccaagc acatggcctt 1560

acgccggaac aggtcgtagc tatagccagt aacggaggcg gtaaacaagc cctggagaca 1620  acgccggaac aggtcgtagc tatagccagt aacggaggcg gtaaacaagc cctggagaca 1620

gttcagcgtt tacttcccgt cctgtgtcaa gctcacggtt tgacaccaga ccaggtggtt 1680  gttcagcgtt tacttcccgt cctgtgtcaa gctcacggtt tgacaccaga ccaggtggtt 1680

gcaatcgcgt caaatattgg aggcaagcaa gccttagaaa ccgtacagag gctgttgcca 1740  gcaatcgcgt caaatattgg aggcaagcaa gccttagaaa ccgtacagag gctgttgcca 1740

gtgctctgcc aagctcacgg attaactcct gagcaagtcg ttgcaatcgc ctctcatgat 1800  gtgctctgcc aagctcacgg attaactcct gagcaagtcg ttgcaatcgc ctctcatgat 1800

ggtggaaaac aagccctcga gacagttcag agactcttac ccgtcctttg tcaagctcac 1860  ggtggaaaac aagccctcga gacagttcag agactcttac ccgtcctttg tcaagctcac 1860

ggcctgactc ctcaacaggt ggttgcaatt gcgagcaata acggtggtaa acaggccctg 1920  ggcctgactc ctcaacaggt ggttgcaatt gcgagcaata acggtggtaa acaggccctg 1920

gaaaccgtac agcgccttct gccagtcttg tgccaagctc acggtctcac tcctgagcaa 1980  gaaaccgtac agcgccttct gccagtcttg tgccaagctc acggtctcac tcctgagcaa 1980

gtcgtagcta tagcctccca tgacggaggc aaacaggctt tggagacagt gcagcgtttg 2040  gtcgtagcta tagcctccca tgacggaggc aaacaggctt tggagacagt gcagcgtttg 2040

ctccccgttt tatgtcaagc tcatggactt actcctgatc aagttgttgc aatagcgtcg 2100  ctccccgttt tatgtcaagc tcatggactt actcctgatc aagttgttgc aatagcgtcg 2100

aacatcggtg gaaagcaagc tctggagacc gtccagaggt tgttgccagt gctgtgccaa 2160  aacatcggtg gaaagcaagc tctggagacc gtccagaggt tgttgccagt gctgtgccaa 2160

gcacacggat tgactcctgc acaagttgta gctattgcca gtaataacgg cggtaaacaa 2220  gcacacggat tgactcctgc acaagttgta gctattgcca gtaataacgg cggtaaacaa 2220

gccttggaaa cagttcagcg cttgctgcct gttctctgtc aagctcatgg tttaactcct 2280  gccttggaaa cagttcagcg cttgctgcct gttctctgtc aagctcatgg tttaactcct 2280

gagcaagttg tcgcaattgc gtcaaacata ggtggcaagc aggccctgga gaccgtgcag 2340  gagcaagttg tcgcaattgc gtcaaacata ggtggcaagc aggccctgga gaccgtgcag 2340

cgtctcttac cagttctttg ccaagctcac ggactgacgc cgcaacaagt ggtagctatt 2400  cgtctcttac cagttctttg ccaagctcac ggactgacgc cgcaacaagt ggtagctatt 2400

gcctctaatg gtggaggcaa acaagccctg gaaacagtcc agagacttct gcccgtgttg 2460  gcctctaatg gtggaggcaa acaagccctg gaaacagtcc agagacttct gcccgtgttg 2460

tgtcaagctc acggcctcac tcctgaacag gttgtggcaa tcgcgagcca tgacggtgga 2520  tgtcaagctc acggcctcac tcctgaacag gttgtggcaa tcgcgagcca tgacggtgga 2520

aagcaggctt tggagaccgt tcagcgcttg ctcccagtct tatgccaagc tcacggattg 2580  aagcaggctt tggagaccgt tcagcgcttg ctcccagtct tatgccaagc tcacggattg 2580

actcctgagc aggtcgtagc tatagcatcc aacggaggtg gaaggccagc actcgagtcg 2640  actcctgagc aggtcgtagc tatagcatcc aacggaggtg gaaggccagc actcgagtcg 2640

atcgtggctc aattaagtag acccgaccct gcccttgcag cgctgactaa tgatcacttg 2700  atcgtggctc aattaagtag acccgaccct gcccttgcag cgctgactaa tgatcacttg 2700

gtcgcactcg cgtgcttagg cggtagaccc gcccttgatg cagtgaaaaa gggtctgcca 2760  gtcgcactcg cgtgcttagg cggtagaccc gcccttgatg cagtgaaaaa gggtctgcca 2760

catgctccag cactcatcaa aagaaccaat cgtcgtattc ccgagaggac atcacacagg 2820  catgctccag cactcatcaa aagaaccaat cgtcgtattc ccgagaggac atcacacagg 2820

gtggcgggat cccagctggt gaagagcgag ctggaggaga agaagtccga gctgcggcac 2880  gtggcgggat cccagctggt gaagagcgag ctggaggaga agaagtccga gctgcggcac 2880

aagctgaagt acgtgcccca cgagtacatc gagctgatcg agatcgccag gaacagcacc 2940  aagctgaagt acgtgcccca cgagtacatc gagctgatcg agatcgccag gaacagcacc 2940

caggaccgca tcctggagat gaaggtgatg gagttcttca tgaaggtgta cggctacagg 3000  caggaccgca tcctggagat gaaggtgatg gagttcttca tgaaggtgta cggctacagg 3000

ggaaagcacc tgggcggaag cagaaagcct gacggcgcca tctatacagt gggcagcccc 3060  ggaaagcacc tgggcggaag cagaaagcct gacggcgcca tctatacagt gggcagcccc 3060

atcgattacg gcgtgatcgt ggacacaaag gcctacagcg gcggctacaa tctgcctatc 3120  atcgattacg gcgtgatcgt ggacacaaag gcctacagcg gcggctacaa tctgcctatc 3120

ggccaggccg acgagatgca gagatacgtg aaggagaacc agacccggaa taagcacatc 3180  ggccaggccg acgagatgca gagatacgtg aaggagaacc agaccggaa taagcacatc 3180

aaccccaacg agtggtggaa ggtgtaccct agcagcgtga ccgagttcaa gttcctgttc 3240  aaccccaacg agtggtggaa ggtgtacccct agcagcgtga ccgagttcaa gttcctgttc 3240

gtgagcggcc acttcaaggg caactacaag gcccagctga ccaggctgaa ccacaaaacc 3300  gtgagcggcc acttcaaggg caactacaag gcccagctga ccaggctgaa ccacaaaacc 3300

aactgcaatg gcgccgtgct gagcgtggag gagctgctga tcggcggcga gatgatcaaa 3360  aactgcaatg gcgccgtgct gagcgtggag gagctgctga tcggcggcga gatgatcaaa 3360

gccggcaccc tgacactgga ggaggtgcgg cgcaagttca acaacggcga gatcaacttc 3420  gccggcaccc tgacactgga ggaggtgcgg cgcaagttca acaacggcga gatcaacttc 3420

tgataa                                                            3426 tgataa 3426

  the

<210>  4 <210> 4

<211>  3414 <211> 3414

<212>  DNA <212> DNA

<213>  人工序列 <213> Artificial sequence

<220>  <220>

<223>  编码TALEN-R核苷酸序列 <223> Nucleotide sequence encoding TALEN-R

<400>  4 <400> 4

atggactaca aagaccatga cggtgattat aaagatcatg acatcgatta caaggatgac   60  atggactaca aagaccatga cggtgattat aaagatcatg acatcgatta caaggatgac 60

gatgacaaga tggcccccaa gaagaagagg aaggtgggca tccacggggt acccatgatg  120  gatgacaaga tggcccccaa gaagaagagg aaggtgggca tccacggggt acccatgatg 120

tctcgcactc gtctccctag ccctccagca ccgtcaccag cattctcggc aggttccttc  180  tctcgcactc gtctccctag ccctccagca ccgtcaccag cattctcggc aggtccttc 180

tcggacttat tacgccagtt tgacccgagc ttattcaata ctagcctttt tgattccctg  240  tcggacttat tacgccagtt tgacccgagc ttattcaata ctagcctttt tgattccctg 240

cctccattcg gtgctcacca tacagaagct gccactggcg aatgggacga ggttcaatcc  300  cctccattcg gtgctcacca tacagaagct gccactggcg aatgggacga ggttcaatcc 300

ggtctgaggg cagcagatgc accaccacct accatgagag tggctgttac ggctgccagg  360  ggtctgaggg cagcagatgc accacacct accatgagag tggctgttac ggctgccagg 360

ccaccgagag ctaaaccagc accaagaagg cgtgcagcac agccatcaga cgcttctccg  420  ccaccgagag ctaaaccagc accaagaagg cgtgcagcac agccatcaga cgcttctccg 420

gctgcccaag tggatctcag gaccttaggt tactcacaac agcaacagga aaaaatcaaa  480  gctgcccaag tggatctcag gaccttaggt tactcacaac agcaacagga aaaaatcaaa 480

ccaaaagtta gatctacagt cgcccagcac catgaggcat tggtgggcca cggttttact  540  ccaaaagtta gatctacagt cgcccagcac catgaggcat tggtgggcca cggttttact 540

cacgcgcata tcgttgctct gtcgcagcat ccggcagcgt tgggaaccgt cgctgtaaag  600  cacgcgcata tcgttgctct gtcgcagcat ccggcagcgt tgggaaccgt cgctgtaaag 600

tatcaagaca tgattgctgc cctccccgaa gccacacacg aggcaatagt gggagttggc  660  tatcaagaca tgattgctgc cctccccgaa gccaacacg aggcaatagt gggagttggc 660

aaacaatggt caggagctag ggccttggaa gcgctgttga cagtggctgg agagctcaga  720  aaacaatggt caggagctag ggccttggaa gcgctgttga cagtggctgg agagctcaga 720

ggaccccctt tacaacttga taccggccag ctcttaaaga ttgctaaacg cggtggagtc  780  ggacccccctt tacaacttga taccggccag ctcttaaaga ttgctaaacg cggtggagtc 780

acggcagtag aagcggtgca cgcttggcgt aacgcgttaa caggagctcc cctgaatttg  840  acggcagtag aagcggtgca cgcttggcgt aacgcgttaa caggagctcc cctgaatttg 840

actcctgaac aggtggttgc aatagcgtcg cacgacggcg gtaaacaagc ccttgagacc  900  actcctgaac aggtggttgc aatagcgtcg cacgacggcg gtaaacaagc ccttgagacc 900

gtacagcgcc ttctgccagt gttgtgccaa gcacatggtc tcacgccgca acaggtcgta  960  gtacagcgcc ttctgccagt gttgtgccaa gcacatggtc tcacgccgca acaggtcgta 960

gctatcgcca gtaacattgg aggcaaacaa gcgttagaaa cagttcagcg tttgctcccc 1020  gctatcgcca gtaacattgg aggcaaacaa gcgttagaaa cagttcagcg tttgctcccc 1020

gtcttatgtc aagctcacgg acttactcct caacaggtgg ttgcaatcgc gtcaaacaat 1080  gtcttatgtc aagctcacgg acttactcct caacaggtgg ttgcaatcgc gtcaaacaat 1080

ggtggaaagc aagccttgga gaccgtacag aggttacttc cagtgctgtg ccaagcacat 1140  ggtggaaagc aagccttgga gaccgtacag aggttacttc cagtgctgtg ccaagcacat 1140

ggcttgacgc cggaacaggt cgtagctatt gcctctaata agggcggtaa acaagcgctc 1200  ggcttgacgc cggaacaggt cgtagctatt gcctctaata agggcggtaa acaagcgctc 1200

gagacagttc agagactgtt gcccgtcctc tgtcaagcac acggtttaac accagagcaa 1260  gagacagttc agagactgtt gcccgtcctc tgtcaagcac acggtttaac accagagcaa 1260

gtggttgcaa tagcgagcaa caatggaggc aaacaagccc tggagaccgt acaggcactc 1320  gtggttgcaa tagcgagcaa caatggaggc aaacaagccc tggagaccgt acaggcactc 1320

ttaccagtgc tttgccaagc ccatggactt actcctgagc aagttgtagc tatcgcctcc 1380  ttaccagtgc tttgccaagc ccatggactt actcctgagc aagttgtagc tatcgcctcc 1380

aacggtggag gcaagcaagc gttggagaca gttcaggctc ttctgcccgt cttgtgtcaa 1440  aacggtggag gcaagcaagc gttggagaca gttcaggctc ttctgcccgt cttgtgtcaa 1440

gctcacggcc tcacaccaga acaggtggtt gcaattgcgt cgcatgatgg tggaaaacaa 1500  gctcacggcc tcacaccaga acaggtggtt gcaattgcgt cgcatgatgg tggaaaacaa 1500

gccctcgaga ccgtacaggc attgctccca gtgttatgcc aagctcacgg tcttactcct 1560  gccctcgaga ccgtacaggc attgctccca gtgttatgcc aagctcacgg tcttactcct 1560

gaacaggtcg tagctatagc cagtaacggc ggtggaaagc aagctctgga gacagttcag 1620  gaacaggtcg tagctatagc cagtaacggc ggtggaaagc aagctctgga gacagttcag 1620

cgcttacttc ccgtcctgtg tcaagcccat ggactgacac ccgagcaagt tgttgcaatc 1680  cgcttacttc ccgtcctgtg tcaagcccat ggactgacac ccgagcaagt tgttgcaatc 1680

gcgtcaaatg gcggtggaaa acaagcattg gagaccgtac agcgtctgtt gccagtgctc 1740  gcgtcaaatg gcggtggaaa acaagcattg gagaccgtac agcgtctgtt gccagtgctc 1740

tgccaggctc acggcttaac tcctcagcaa gttgttgcta ttgcctctaa caatggcggt 1800  tgccaggctc acggcttaac tcctcagcaa gttgttgcta ttgcctctaa caatggcggt 1800

aaacaagccc tcgaaacagt tcagaggctc ttacccgtcc tttgtcaagc tcatggtctc 1860  aaacaagccc tcgaaacagt tcagaggctc ttacccgtcc tttgtcaagc tcatggtctc 1860

acacccgagc aggttgtcgc aatagcgagc aacggaggcg gtaaacaagc gctggagacc 1920  acacccgagc aggttgtcgc aatagcgagc aacggaggcg gtaaacaagc gctggagacc 1920

gtacaggctc ttctgccagt cttgtgccaa gctcacggac tcactccaga gcaagtcgta 1980  gtacaggctc ttctgccagt cttgtgccaa gctcacggac tcactccaga gcaagtcgta 1980

gctatcgcct ccaatggagg cggtaaacaa gccttggaga cagtgcagag attgctcccc 2040  gctatcgcct ccaatggagg cggtaaacaa gccttggaga cagtgcagag attgctcccc 2040

gttttatgtc aagctcacgg ccttacaccc gagcaggttg tggctattgc gtcgcatgac 2100  gttttatgtc aagctcacgg ccttacaccc gagcaggttg tggctattgc gtcgcatgac 2100

ggtggcaaac aggccctgga gaccgtccag cgcttgttgc cagtgctgtg ccaagctcat 2160  ggtggcaaac aggccctgga gaccgtccag cgcttgttgc cagtgctgtg ccaagctcat 2160

ggtctgactc cagagcaggt tgttgctata gccagtaaca tcggaggaaa gcaggccttg 2220  ggtctgactc cagagcaggt tgttgctata gccagtaaca tcggaggaaa gcaggccttg 2220

gagacagttc agcgtttgct gcctgttctc tgtcaagctc acggattaac acccgagcag 2280  gagacagttc agcgtttgct gcctgttctc tgtcaagctc acggattaac acccgagcag 2280

gttgttgcaa tagcgtcaaa taacggtggt aaacaggctt tggagaccgt gcagagactc 2340  gttgttgcaa tagcgtcaaa taacggtggt aaacaggctt tggagaccgt gcagagactc 2340

ttaccagttc tttgccaagc tcatggcctg actcctcagc aagtggttgc tatcgcctct 2400  ttaccagttc tttgccaagc tcatggcctg actcctcagc aagtggttgc tatcgcctct 2400

aacaaaggag gccgccccgc cctggaaaca gtccaacgtc ttctgcctgt gttgtgtcag 2460  aacaaaggag gccgccccgc cctggaaaca gtccaacgtc ttctgcctgt gttgtgtcag 2460

gctcacggtc tcactccaga acaagtggtt gcaattgcga gcaatggagg tggcaaacaa 2520  gctcacggtc tcactccaga acaagtggtt gcaattgcga gcaatggagg tggcaaacaa 2520

gctttggaga ccgttcagcg cttgctcccg gtcttatgcc aggctcacgg acttacgccc 2580  gctttggaga ccgttcagcg cttgctcccg gtcttatgcc aggctcacgg acttacgccc 2580

cagcaagtgg tcgctatcgc atccaacggt ggaggaaggc ctgcactcga atcgattgtg 2640  cagcaagtgg tcgctatcgc atccaacggt ggaggaaggc ctgcactcga atcgattgtg 2640

gcacaattaa gtcgtcccga ccctgccctt gcagcgctga ctaatgatca cttggtcgca 2700  gcacaattaa gtcgtcccga ccctgccctt gcagcgctga ctaatgatca cttggtcgca 2700

ctcgcgtgct taggtggaag acctgccctt gatgcagtga aaaagggtct gccacatgct 2760  ctcgcgtgct taggtggaag acctgccctt gatgcagtga aaaagggtct gccacatgct 2760

cccgcactca tcaagagaac taatagacgc atacccgaga gaaccagcca ccgtgttgct 2820  cccgcactca tcaagagaac taatagacgc atacccgaga gaaccagcca ccgtgttgct 2820

ggatcccagc tggtgaagag cgagctggag gagaagaagt ccgagctgcg gcacaagctg 2880  ggatcccagc tggtgaagag cgagctggag gagaagaagt ccgagctgcg gcacaagctg 2880

aagtacgtgc cccacgagta catcgagctg atcgagatcg ccaggaacag cacccaggac 2940  aagtacgtgc cccacgagta catcgagctg atcgagatcg ccaggaacag cacccaggac 2940

cgcatcctgg agatgaaggt gatggagttc ttcatgaagg tgtacggcta caggggaaag 3000  cgcatcctgg agatgaaggt gatggagttc ttcatgaagg tgtacggcta caggggaaag 3000

cacctgggcg gaagcagaaa gcctgacggc gccatctata cagtgggcag ccccatcgat 3060  cacctgggcg gaagcagaaa gcctgacggc gccatctata cagtgggcag ccccatcgat 3060

tacggcgtga tcgtggacac aaaggcctac agcggcggct acaatctgcc tatcggccag 3120  tacggcgtga tcgtggacac aaaggcctac agcggcggct acaatctgcc tatcggccag 3120

gccgacgaga tggagagata cgtggaggag aaccagaccc ggaataagca cctcaacccc 3180  gccgacgaga tggagagata cgtggaggag aaccagaccc ggaataagca cctcaacccc 3180

aacgagtggt ggaaggtgta ccctagcagc gtgaccgagt tcaagttcct gttcgtgagc 3240  aacgagtggt ggaaggtgta ccctagcagc gtgaccgagt tcaagttcct gttcgtgagc 3240

ggccacttca agggcaacta caaggcccag ctgaccaggc tgaaccacat caccaactgc 3300  ggccacttca agggcaacta caaggcccag ctgaccaggc tgaaccacat caccaactgc 3300

aatggcgccg tgctgagcgt ggaggagctg ctgatcggcg gcgagatgat caaagccggc 3360  aatggcgccg tgctgagcgt ggaggagctg ctgatcggcg gcgagatgat caaagccggc 3360

accctgacac tggaggaggt gcggcgcaag ttcaacaacg gcgagatcaa cttc       3414 accctgacac tggaggaggt gcggcgcaag ttcaacaacg gcgagatcaa cttc 3414

  the

<210>  5 <210> 5

<211>  22 <211> 22

<212>  DNA <212> DNA

<213>  人工序列 <213> Artificial sequence

<220>  <220>

<223>  第三外显子上游检测引物B3-F364 <223> The third exon upstream detection primer B3-F364

<400>  5 <400> 5

tccaatttga gggcaatgct ac tccaatttga gggcaatgct ac

  the

<210>  6 <210> 6

<211>  26 <211> 26

<212>  DNA <212> DNA

<213>  人工序列 <213> Artificial sequence

<220>  <220>

<223>  第三外显子下游检测引物B3-R315 <223> The third exon downstream detection primer B3-R315

<400>  6 <400> 6

atttcaccac ctcattcaac taagat  26 atttcaccac ctcattcaac taagat 26

  the

<210>  7 <210> 7

<211>  674 <211> 674

<212>  DNA <212> DNA

<213>  家蚕(Bombyx moriL.) <213> Silkworm ( Bombyx mori L.)

<220>  <220>

<223>  家蚕突变体Bb-1-01测序结果 <223> Sequencing results of silkworm mutant Bb-1-01

<400>  7 <400> 7

tccaatttga gggcaatgct acaatattag aactgcacta ttaaaaataa tcgatttaat   60  tccaatttga gggcaatgct acaatattag aactgcacta ttaaaaataa tcgatttaat 60

gaatgaaaga ttaataaatc tacagtttat ttcgaaataa atagtatcag atctttgttt  120  gaatgaaaga ttaataaatc tacagtttat ttcgaaataa atagtatcag atctttgttt 120

tgtataaatt tttttatgaa tatctataac cagtttagag aaaatctgta agaataataa  180  tgtataaatt tttttatgaa tatctataac cagtttagag aaaatctgta agaataataa 180

atccttaagc aaattgttgc aagggactga ttgttgtatc acaccaaggt acttaagacc  240  atccttaagc aaattgttgc aagggactga ttgttgtatc acaccaaggt acttaagacc 240

cagagaatta ccagaaacaa gacccatatg gttatttcaa gtaaatattt gatacaggaa  300  cagagaatta ccagaaacaa gacccatatg gttatttcaa gtaaatattt gatacaggaa 300

cactacatgc tgcttgagga gatcaacaga ctcgcgatca ccaagtacgc agatctaagg  360  cactacatgc tgcttgagga gatcaacaga ctcgcgatca ccaagtacgc agatctaagg 360

aaccgcgaac ctgaacaaga cccttaatga atacaacgag atgtgtgagt ttttaactgg  420  aaccgcgaac ctgaacaaga cccttaatga atacaacgag atgtgtgagt ttttaactgg 420

aaccatcaat tttttaatga atgtattgcc agcaaatgtg tcataataca aagcaacttg  480  aaccatcaat tttttaatga atgtattgcc agcaaatgtg tcataataca aagcaacttg 480

tgtttcagtt atcaaataat ttgataaaca ctgtggctag cttatgtgtc atttgttttt  540  tgtttcagtt atcaaataat ttgataaaca ctgtggctag cttatgtgtc atttgttttt 540

gtgaaggcat agaattgaaa taatccctca tatcaactat tgctataatc tctaaattgc  600  gtgaaggcat agaattgaaa taatccctca tatcaactat tgctataatc tctaaattgc 600

attctgtcaa cgcctggcct attagaattt aggcctaact aacacaagat cttagttgaa  660  attctgtcaa cgcctggcct attagaattt aggcctaact aacacaagat cttagttgaa 660

tgaggtggtg aaat                                                    674 tgaggtggtg aaat 674

  the

<210>  8 <210> 8

<211>  673 <211> 673

<212>  DNA <212> DNA

<213>  家蚕(Bombyx moriL.) <213> Silkworm ( Bombyx mori L.)

<220>  <220>

<223>  家蚕突变体Bb-1-05测序结果 <223> Sequencing results of silkworm mutant Bb-1-05

<400>  8 <400> 8

tccaatttga gggcaatgct acaatattag aactgcacta ttaaaaataa tcgatttaat   60  tccaatttga gggcaatgct acaatattag aactgcacta ttaaaaataa tcgatttaat 60

gaatgaaaga ttaataaatc tacagtttat ttcgaaataa atagtatcag atctttgttt  120  gaatgaaaga ttaataaatc tacagtttat ttcgaaataa atagtatcag atctttgttt 120

tgtataaatt tttttatgaa tatctataac cagtttagag aaaatctgta agaataataa  180  tgtataaatt tttttatgaa tatctataac cagtttagag aaaatctgta agaataataa 180

atccttaagc aaattgttgc aagggactga ttgttgtatc acaccaaggt acttaagacc  240  atccttaagc aaattgttgc aagggactga ttgttgtatc acaccaaggt acttaagacc 240

cagagaatta ccagaaacaa gacccatatg gttatttcaa gtaaatattt gatacaggaa  300  cagagaatta ccagaaacaa gacccatatg gttatttcaa gtaaatattt gatacaggaa 300

cactacatgc tgcttgagga gatcaacaga ctcgcgatca ccaagtacgc agatctaagg  360  cactacatgc tgcttgagga gatcaacaga ctcgcgatca ccaagtacgc agatctaagg 360

agcgcgaacc tgaacaagac ccttaatgaa tacaacgaga tgtgtgagtt tttaactgga  420  agcgcgaacc tgaacaagac ccttaatgaa tacaacgaga tgtgtgagtt tttaactgga 420

accatcaatt ttttaatgaa tgtattgcca gcaaatgtgt cataatacaa agcaacttgt  480  accatcaatt ttttaatgaa tgtattgcca gcaaatgtgt cataatacaa agcaacttgt 480

gtttcagtta tcaaataatt tgataaacac tgtggctagc ttatgtgtca tttgtttttg  540  gtttcagtta tcaaataatt tgataaacac tgtggctagc ttatgtgtca tttgtttttg 540

tgaaggcata gaattgaaat aatccctcat atcaactatt gctataatct ctaaattgca  600  tgaaggcata gaattgaaat aatccctcat atcaactatt gctataatct ctaaattgca 600

ttctgtcaac gcctggccta ttagaattta ggcctaacta acacaagatc ttagttgaat  660  ttctgtcaac gcctggccta ttagaattta ggcctaacta acacaagatc ttagttgaat 660

gaggtggtga aat                                                     673 gaggtggtga aat 673

  the

  the

<210>  9 <210> 9

<211>  680 <211> 680

<212>  DNA <212> DNA

<213>  家蚕(Bombyx moriL.) <213> Silkworm ( Bombyx mori L.)

<220>  <220>

<223>  家蚕突变体Bb-1-07测序结果 <223> Sequencing results of silkworm mutant Bb-1-07

<400>  9 <400> 9

tccaatttga gggcaatgct acaatattag aactgcacta ttaaaaataa tcgatttaat   60  tccaatttga gggcaatgct acaatattag aactgcacta ttaaaaataa tcgatttaat 60

gaatgaaaga ttaataaatc tacagtttat ttcgaaataa atagtatcag atctttgttt  120  gaatgaaaga ttaataaatc tacagtttat ttcgaaataa atagtatcag atctttgttt 120

tgtataaatt tttttatgaa tatctataac cagtttagag aaaatctgta agaataataa  180  tgtataaatt tttttatgaa tatctataac cagtttagag aaaatctgta agaataataa 180

atccttaagc aaattgttgc aagggactga ttgttgtatc acaccaaggt acttaagacc  240  atccttaagc aaattgttgc aagggactga ttgttgtatc acaccaaggt acttaagacc 240

cagagaatta ccagaaacaa gacccatatg gttatttcaa gtaaatattt gatacaggaa  300  cagagaatta ccagaaacaa gacccatatg gttatttcaa gtaaatattt gatacaggaa 300

cactacatgc tgcttgagga gatcaacaga ctcgcgatca ccaagtacgc agatctaagg  360  cactacatgc tgcttgagga gatcaacaga ctcgcgatca ccaagtacgc agatctaagg 360

agcagaagcc gcgaacctga acaagaccct taatgaatac aacgagatgt gtgagttttt  420  agcagaagcc gcgaacctga acaagaccct taatgaatac aacgagatgt gtgagttttt 420

aactggaacc atcaattttt taatgaatgt attgccagca aatgtgtcat aatacaaagc  480  aactggaacc atcaattttt taatgaatgt attgccagca aatgtgtcat aatacaaagc 480

aacttgtgtt tcagttatca aataatttga taaacactgt ggctagctta tgtgtcattt  540  aacttgtgtt tcagttatca aataatttga taaacactgt ggctagctta tgtgtcattt 540

gtttttgtga aggcatagaa ttgaaataat ccctcatatc aactattgct ataatctcta  600  gtttttgtga aggcatagaa ttgaaataat ccctcatatc aactattgct ataatctcta 600

aattgcattc tgtcaacgcc tggcctatta gaatttaggc ctaactaaca caagatctta  660  aattgcattc tgtcaacgcc tggccttatta gaatttaggc ctaactaaca caagatctta 660

gttgaatgag gtggtgaaat                                              680 gttgaatgag gtggtgaaat 680

  the

  the

<210>  10 <210> 10

<211>  678 <211> 678

<212>  DNA <212> DNA

<213>  家蚕(Bombyx moriL.) <213> Silkworm ( Bombyx mori L.)

<220>  <220>

<223>  家蚕突变体Be-4-02测序结果 <223> Sequencing results of silkworm mutant Be-4-02

<400>  10 <400> 10

tccaatttga gggcaatgct acaatattag aactgcacta ttaaaaataa tcgatttaat   60  tccaatttga gggcaatgct acaatattag aactgcacta ttaaaaataa tcgatttaat 60

gaatgaaaga ttaataaatc tacagtttat ttcgaaataa atagtatcag atctttgttt  120  gaatgaaaga ttaataaatc tacagtttat ttcgaaataa atagtatcag atctttgttt 120

tgtataaatt tttttatgaa tatctataac cagtttagag aaaatctgta agaataataa  180  tgtataaatt tttttatgaa tatctataac cagtttagag aaaatctgta agaataataa 180

atccttaagc aaattgttgc aagggactga ttgttgtatc acaccaaggt acttaagacc  240  atccttaagc aaattgttgc aagggactga ttgttgtatc acaccaaggt acttaagacc 240

cagagaatta ccagaaacaa gacccatatg gttatttcaa gtaaatattt gatacaggaa  300  cagagaatta ccagaaacaa gacccatatg gttatttcaa gtaaatattt gatacaggaa 300

cactacatgc tgcttgagga gatcaacaga ctcgcgatca ccaagtacgc agatgaaagg  360  cactacatgc tgcttgagga gatcaacaga ctcgcgatca ccaagtacgc agatgaaagg 360

agctagccgc gaacctgaac aagaccctta atgaatacaa cgagatgtgt gagtttttaa  420  agctagccgc gaacctgaac aagaccctta atgaatacaa cgagatgtgt gagtttttaa 420

ctggaaccat caatttttta atgaatgtat tgccagcaaa tgtgtcataa tacaaagcaa  480  ctggaaccat caatttttta atgaatgtat tgccagcaaa tgtgtcataa tacaaagcaa 480

cttgtgtttc agttatcaaa taatttgata aacactgtgg ctagcttatg tgtcatttgt  540  cttgtgtttc agttatcaaa taatttgata aacactgtgg ctagctttg tgtcatttgt 540

ttttgtgaag gcatagaatt gaaataatcc ctcatatcaa ctattgctat aatctctaaa  600  ttttgtgaag gcatagaatt gaaataatcc ctcatatcaa ctattgctat aatctctaaa 600

ttgcattctg tcaacgcctg gcctattaga atttaggcct aactaacaca agatcttagt  660  ttgcattctg tcaacgcctg gcctattaga atttaggcct aactaacaca agatcttagt 660

tgaatgaggt ggtgaaat                                                678 tgaatgaggt ggtgaaat 678

  the

<210>  11 <210> 11

<211>  673 <211> 673

<212>  DNA <212> DNA

<213>  家蚕(Bombyx moriL.) <213> Silkworm ( Bombyx mori L.)

<220>  <220>

<223>  家蚕突变体Be-4-04测序结果 <223> Sequencing results of silkworm mutant Be-4-04

<400>  11 <400> 11

tccaatttga gggcaatgct acaatattag aactgcacta ttaaaaataa tcgatttaat   60  tccaatttga gggcaatgct acaatattag aactgcacta ttaaaaataa tcgatttaat 60

gaatgaaaga ttaataaatc tacagtttat ttcgaaataa atagtatcag atctttgttt  120  gaatgaaaga ttaataaatc tacagtttat ttcgaaataa atagtatcag atctttgttt 120

tgtataaatt tttttatgaa tatctataac cagtttagag aaaatctgta agaataataa  180  tgtataaatt tttttatgaa tatctataac cagtttagag aaaatctgta agaataataa 180

atccttaagc aaattgttgc aagggactga ttgttgtatc acaccaaggt acttaagacc  240  atccttaagc aaattgttgc aagggactga ttgttgtatc acaccaaggt acttaagacc 240

cagagaatta ccagaaacaa gacccatatg gttatttcaa gtaaatattt gatacaggaa  300  cagagaatta ccagaaacaa gacccatatg gttatttcaa gtaaatattt gatacaggaa 300

cactacatgc tgcttgagga gatcaacaga ctcgcgatca ccaagtacgc agatctaagg  360  cactacatgc tgcttgagga gatcaacaga ctcgcgatca ccaagtacgc agatctaagg 360

agccgcgaac ctgttaagac ccttattgaa tacaacgaga tgtgtgagtt tttaactgga  420  agccgcgaac ctgttaagac ccttattgaa tacaacgaga tgtgtgagtt tttaactgga 420

accatcaatt ttttaatgaa tgtattgcca gcaaatgtgt cataatacaa agcaacttgt  480  accatcaatt ttttaatgaa tgtattgcca gcaaatgtgt cataatacaa agcaacttgt 480

gtttcagtta tcaaataatt tgataaacac tgtggctagc ttatgtgtca tttgtttttg  540  gtttcagtta tcaaataatt tgataaacac tgtggctagc ttatgtgtca tttgtttttg 540

tgaaggcata gaattgaaat aatccctcat atcaactatt gctataatct ctaaattgca  600  tgaaggcata gaattgaaat aatccctcat atcaactatt gctataatct ctaaattgca 600

ttctgtcaac gcctggccta ttagaattta ggcctaacta acacaagatc ttagttgaat  660  ttctgtcaac gcctggccta ttagaattta ggcctaacta acacaagatc ttagttgaat 660

gaggtggtga aat                                                     673 gaggtggtga aat 673

  the

  the

<210>  12 <210> 12

<211>  669 <211> 669

<212>  DNA <212> DNA

<213>  家蚕(Bombyx moriL.) <213> Silkworm ( Bombyx mori L.)

<220>  <220>

<223>  家蚕突变体Be-4-06测序结果 <223> Sequencing results of silkworm mutant Be-4-06

<400>  12 <400> 12

tccaatttga gggcaatgct acaatattag aactgcacta ttaaaaataa tcgatttaat   60  tccaatttga gggcaatgct acaatattag aactgcacta ttaaaaataa tcgatttaat 60

gaatgaaaga ttaataaatc tacagtttat ttcgaaataa atagtatcag atctttgttt  120  gaatgaaaga ttaataaatc tacagtttat ttcgaaataa atagtatcag atctttgttt 120

tgtataaatt tttttatgaa tatctataac cagtttagag aaaatctgta agaataataa  180  tgtataaatt tttttatgaa tatctataac cagtttagag aaaatctgta agaataataa 180

atccttaagc aaattgttgc aagggactga ttgttgtatc acaccaaggt acttaagacc  240  atccttaagc aaattgttgc aagggactga ttgttgtatc acaccaaggt acttaagacc 240

cagagaatta ccagaaacaa gacccatatg gttatttcaa gtaaatattt gatacaggaa  300  cagagaatta ccagaaacaa gacccatatg gttatttcaa gtaaatattt gatacaggaa 300

cactacatgc tgcttgagga gatcaacaga ctcgcgatca ccaagtacgc agatctaagg  360  cactacatgc tgcttgagga gatcaacaga ctcgcgatca ccaagtacgc agatctaagg 360

agcgcctgaa caagaccctt aatgaataca acgagatgtg tgagttttta actggaacca  420  agcgcctgaa caagaccctt aatgaataca acgagatgtg tgagttttta actggaacca 420

tcaatttttt aatgaatgta ttgccagcaa atgtgtcata atacaaagca acttgtgttt  480  tcaatttttt aatgaatgta ttgccagcaa atgtgtcata atacaaagca acttgtgttt 480

cagttatcaa ataatttgat aaacactgtg gctagcttat gtgtcatttg tttttgtgaa  540  cagttatcaa ataatttgat aaacactgtg gctagcttat gtgtcatttg tttttgtgaa 540

ggcatagaat tgaaataatc cctcatatca actattgcta taatctctaa attgcattct  600  ggcatagaat tgaaataatc cctcatatca actattgcta taatctctaa attgcattct 600

gtcaacgcct ggcctattag aatttaggcc taactaacac aagatcttag ttgaatgagg  660  gtcaacgcct ggcctattag aatttaggcc taactaacac aagatcttag ttgaatgagg 660

tggtgaaat                                                          669 tggtgaaat 669

  the

  the

<210>  13 <210> 13

<211>  669 <211> 669

<212>  DNA <212> DNA

<213>  家蚕(Bombyx moriL.) <213> Silkworm ( Bombyx mori L.)

<220>  <220>

<223>  家蚕突变体Be-4-09测序结果 <223> Sequencing results of silkworm mutant Be-4-09

<400>  13 <400> 13

tccaatttga gggcaatgct acaatattag aactgcacta ttaaaaataa tcgatttaat   60  tccaatttga gggcaatgct acaatattag aactgcacta ttaaaaataa tcgatttaat 60

gaatgaaaga ttaataaatc tacagtttat ttcgaaataa atagtatcag atctttgttt  120  gaatgaaaga ttaataaatc tacagtttat ttcgaaataa atagtatcag atctttgttt 120

tgtataaatt tttttatgaa tatctataac cagtttagag aaaatctgta agaataataa  180  tgtataaatt tttttatgaa tatctataac cagtttagag aaaatctgta agaataataa 180

atccttaagc aaattgttgc aagggactga ttgttgtatc acaccaaggt acttaagacc  240  atccttaagc aaattgttgc aagggactga ttgttgtatc acaccaaggt acttaagacc 240

cagagaatta ccagaaacaa gacccatatg gttatttcaa gtaaatattt gatacaggaa  300  cagagaatta ccagaaacaa gacccatatg gttatttcaa gtaaatattt gatacaggaa 300

cactacatgc tgcttgagga gatcaacaga ctcgcgatca ccaagtacgc agatctaagg  360  cactacatgc tgcttgagga gatcaacaga ctcgcgatca ccaagtacgc agatctaagg 360

agcacctgaa caagaccctt aatgaataca acgagatgtg tgagttttta actggaacca  420  agcacctgaa caagaccctt aatgaataca acgagatgtg tgagttttta actggaacca 420

tcaatttttt aatgaatgta ttgccagcaa atgtgtcata atacaaagca acttgtgttt  480  tcaatttttt aatgaatgta ttgccagcaa atgtgtcata atacaaagca acttgtgttt 480

cagttatcaa ataatttgat aaacactgtg gctagcttat gtgtcatttg tttttgtgaa  540  cagttatcaa ataatttgat aaacactgtg gctagcttat gtgtcatttg tttttgtgaa 540

ggcatagaat tgaaataatc cctcatatca actattgcta taatctctaa attgcattct  600  ggcatagaat tgaaataatc cctcatatca actattgcta taatctctaa attgcattct 600

gtcaacgcct ggcctattag aatttaggcc taactaacac aagatcttag ttgaatgagg  660  gtcaacgcct ggcctattag aatttaggcc taactaacac aagatcttag ttgaatgagg 660

tggtgaaat                                                          669 tggtgaaat 669

  the

  the

<210>  14 <210> 14

<211>  678 <211> 678

<212>  DNA <212> DNA

<213>  家蚕(Bombyx moriL.) <213> Silkworm ( Bombyx mori L.)

<220>  <220>

<223>  家蚕突变体Be-4-12测序结果 <223> Sequencing results of silkworm mutant Be-4-12

<400>  14 <400> 14

tccaatttga gggcaatgct acaatattag aactgcacta ttaaaaataa tcgatttaat   60  tccaatttga gggcaatgct acaatattag aactgcacta ttaaaaataa tcgatttaat 60

gaatgaaaga ttaataaatc tacagtttat ttcgaaataa atagtatcag atctttgttt  120  gaatgaaaga ttaataaatc tacagtttat ttcgaaataa atagtatcag atctttgttt 120

tgtataaatt tttttatgaa tatctataac cagtttagag aaaatctgta agaataataa  180  tgtataaatt tttttatgaa tatctataac cagtttagag aaaatctgta agaataataa 180

atccttaagc aaattgttgc aagggactga ttgttgtatc acaccaaggt acttaagacc  240  atccttaagc aaattgttgc aagggactga ttgttgtatc acaccaaggt acttaagacc 240

cagagaatta ccagaaacaa gacccatatg gttatttcaa gtaaatattt gatacaggaa  300  cagagaatta ccagaaacaa gacccatatg gttatttcaa gtaaatattt gatacaggaa 300

cactacatgc tgcttgagga gatcaacaga ctcgcgatca ccaagtacgc agatctaagg  360  cactacatgc tgcttgagga gatcaacaga ctcgcgatca ccaagtacgc agatctaagg 360

agctagccgc gaacctgaac aagaccctta atgaatacaa cgagatgtgt gagtttttaa  420  agctagccgc gaacctgaac aagaccctta atgaatacaa cgagatgtgt gagtttttaa 420

ctggaaccat caatttttta atgaatgtat tgccagcaaa tgtgtcataa tacaaagcaa  480  ctggaaccat caatttttta atgaatgtat tgccagcaaa tgtgtcataa tacaaagcaa 480

cttgtgtttc agttatcaaa taatttgata aacactgtgg ctagcttatg tgtcatttgt  540  cttgtgtttc agttatcaaa taatttgata aacactgtgg ctagctttg tgtcatttgt 540

ttttgtgaag gcatagaatt gaaataatcc ctcatatcaa ctattgctat aatctctaaa  600  ttttgtgaag gcatagaatt gaaataatcc ctcatatcaa ctattgctat aatctctaaa 600

ttgcattctg tcaacgcctg gcctattaga atttaggcct aactaacaca agatcttagt  660  ttgcattctg tcaacgcctg gcctattaga atttaggcct aactaacaca agatcttagt 660

tgaatgaggt ggtgaaat                                                678 tgaatgaggt ggtgaaat 678

  the

  the

<210>  15 <210> 15

<211>  667 <211> 667

<212>  DNA <212> DNA

<213>  家蚕(Bombyx moriL.) <213> Silkworm ( Bombyx mori L.)

<220>  <220>

<223>  家蚕突变体Be-4-17测序结果 <223> Sequencing results of silkworm mutant Be-4-17

<400>  15 <400> 15

tccaatttga gggcaatgct acaatattag aactgcacta ttaaaaataa tcgatttaat   60  tccaatttga gggcaatgct acaatattag aactgcacta ttaaaaataa tcgatttaat 60

gaatgaaaga ttaataaatc tacagtttat ttcgaaataa atagtatcag atctttgttt  120  gaatgaaaga ttaataaatc tacagtttat ttcgaaataa atagtatcag atctttgttt 120

tgtataaatt tttttatgaa tatctataac cagtttagag aaaatctgta agaataataa  180  tgtataaatt tttttatgaa tatctataac cagtttagag aaaatctgta agaataataa 180

atccttaagc aaattgttgc aagggactga ttgttgtatc acaccaaggt acttaagacc  240  atccttaagc aaattgttgc aagggactga ttgttgtatc acaccaaggt acttaagacc 240

cagagaatta ccagaaacaa gacccatatg gttatttcaa gtaaatattt gatacaggaa  300  cagagaatta ccagaaacaa gacccatatg gttatttcaa gtaaatattt gatacaggaa 300

cactacatgc tgcttgagga gatcaacaga ctcgcgatca ccaagtacgc agatctaagg  360  cactacatgc tgcttgagga gatcaacaga ctcgcgatca ccaagtacgc agatctaagg 360

aacctgaaca agacccttaa tgaatacaac gagatgtgtg agtttttaac tggaaccatc  420  aacctgaaca agacccttaa tgaatacaac gagatgtgtg agtttttaac tggaaccatc 420

aattttttaa tgaatgtatt gccagcaaat gtgtcataat acaaagcaac ttgtgtttca  480  aattttttaa tgaatgtatt gccagcaaat gtgtcataat acaaagcaac ttgtgtttca 480

gttatcaaat aatttgataa acactgtggc tagcttatgt gtcatttgtt tttgtgaagg  540  gttatcaaat aatttgataa acactgtggc tagcttatgt gtcatttgtt tttgtgaagg 540

catagaattg aaataatccc tcatatcaac tattgctata atctctaaat tgcattctgt  600  catagaattg aaataatccc tcatatcaac tattgctata atctctaaat tgcattctgt 600

caacgcctgg cctattagaa tttaggccta actaacacaa gatcttagtt gaatgaggtg  660  caacgcctgg cctattagaa tttaggccta actaacacaa gatcttagtt gaatgaggtg 660

gtgaaat                                                            667 gtgaaat 667

  the

  the

<210>  16 <210> 16

<211>  667 <211> 667

<212>  DNA <212> DNA

<213>  家蚕(Bombyx moriL.) <213> Silkworm ( Bombyx mori L.)

<220>  <220>

<223>  家蚕突变体Bc-21-11测序结果 <223> Sequencing results of silkworm mutant Bc-21-11

<400>  16 <400> 16

tccaatttga gggcaatgct acaatattag aactgcacta ttaaaaataa tcgatttaat   61    tccaatttga gggcaatgct acaatattag aactgcacta ttaaaaataa tcgatttaat 61

gaatgaaaga ttaataaatc tacagtttat ttcgaaataa atagtatcag atctttgttt  121    gaatgaaaga ttaataaatc tacagtttat ttcgaaataa atagtatcag atctttgttt 121

tgtataaatt tttttatgaa tatctataac cagtttagag aaaatctgta agaataataa  181    tgtataaatt tttttatgaa tatctataac cagtttagag aaaatctgta agaataataa 181

atccttaagc aaattgttgc aagggactga ttgttgtatc acaccaaggt acttaagacc  241    atccttaagc aaattgttgc aagggactga ttgttgtatc acaccaaggt acttaagacc 241

cagagaatta ccagaaacaa gacccatatg gttatttcaa gtaaatattt gatacaggaa  301    cagagaatta ccagaaacaa gacccatatg gttatttcaa gtaaatattt gatacaggaa 301

cactacatgc tgcttgagga gatcaacaga ctcgcgatca ccaagtacgc agatctaagg  361    cactacatgc tgcttgagga gatcaacaga ctcgcgatca ccaagtacgc agatctaagg 361

agccgcgaac ctgaacaaga cccttaatga atacaacgag atgtgtgagt ttttaactgg  421    agccgcgaac ctgaacaaga cccttaatga atacaacgag atgtgtgagt ttttaactgg 421

aaccatcaat tttttaatga atgtattgcc agcaaatgtg tcataataca aagcaacttg  481    aaccatcaat tttttaatga atgtattgcc agcaaatgtg tcataataca aagcaacttg 481

tgtttcagtt atcaaataat ttgataaaca ctgtggctag cttatgtgtc atttgttttt  541    tgtttcagtt atcaaataat ttgataaaca ctgtggctag cttatgtgtc atttgttttt 541

gtgaaggcat agaattgaaa taatccctca tatcaactat tgctataatc tctaaattgc  601    gtgaaggcat agaattgaaa taatccctca tatcaactat tgctataatc tctaaattgc 601

attctgtcaa cgcctggcct attagaattt aggcctaact aacacaagat cttagttgaa  661    attctgtcaa cgcctggcct attagaattt aggcctaact aacacaagat cttagttgaa 661

tgaggtggtg aaat                                                    674 tgaggtggtg aaat 674

  the

  the

<210>  17 <210> 17

<211>  100 <211> 100

<212>  DNA <212> DNA

<213>  人工序列 <213> Artificial sequence

<220>  <220>

<223>  ssODNs核苷酸序列 <223> ssODNs nucleotide sequence

<400>  17 <400> 17

tgtcaccgag ctgttcgagt ttcgaagtcc tggatccaca tgatcctgtg atcagtcggt  60 tgtcaccgag ctgttcgagt ttcgaagtcc tggatccaca tgatcctgtg atcagtcggt 60

gccgcgaacc tgaacaagac ccttaatgaa tacaacgaga                       100 gccgcgaacc tgaacaagac ccttaatgaa tacaacgaga 100

  the

<210>  18 <210> 18

<211>  25 <211> 25

<212>  DNA <212> DNA

<213>  人工序列 <213> Artificial sequence

<220>  <220>

<223>  突变体扩增上游引物 <223> mutant amplification upstream primer

<400>  18 <400> 18

ttggtccagt aggtttgaag taggt    25 ttggtccagt aggtttgaag taggt 25

  the

Claims (9)

1. delete system based on the genome long segment of TALEN and ssODNs; It is characterized in that: said deletion system is made up of the transcriptional activation increment effector nucleicacidase TALEN and the single stranded oligonucleotide ssODNs that shear the goal gene target sequence, and the nucleicacidase TALEN-R that said restriction endonuclease TALEN is held by the nucleicacidase TALEN-L that shears said target sequence 5 ' end and the said target sequence 3 ' of shearing forms; Said single stranded oligonucleotide ssODNs is made up of at least 10 continuous nucleotides of 10 continuous nucleotides in the said target sequence and the distance said target sequence upper reaches or 1 base in downstream at least at least.
2. genome long segment according to claim 1 is deleted system, and it is characterized in that: said target sequence is the nucleotide sequence of T (Nn) A, and N is A, G, and the arbitrary base among T and the C, n is the arbitrary numeral between 24 to 65.
3. genome long segment according to claim 1 and 2 is deleted system, and it is characterized in that: said goal gene is a silkworm oily silkworm gene BmBlos2, said target sequence is nucleotide sequence shown in SEQ ID NO.2.
4. genome long segment according to claim 1 is deleted system, it is characterized in that: the protein of said nucleicacidase TALEN-L nucleotide coding shown in SEQ ID NO.3; The protein of said nucleicacidase TALEN-R nucleotide coding shown in SEQ ID NO.4.
5. genome long segment according to claim 1 is deleted system, it is characterized in that: said single stranded oligonucleotide ssODNs is made up of continuous 60 Nucleotide of 795 bases of continuous 40 Nucleotide and the distance said target sequence upper reaches of said target sequence.
6. genome long segment according to claim 1 is deleted system, and it is characterized in that: said single stranded oligonucleotide ssODNs is Nucleotide shown in SEQ ID NO.17.
7. each said genome long segment of claim 1-6 is deleted system transforms goal gene in the target cell genome application.
8. application according to claim 7 is characterized in that: said target cell is the silkworm egg cell.
9. according to claim 7 or 8 described application, it is characterized in that: said goal gene is a silkworm oily silkworm gene BmBlos
CN201210095048.6A 2012-03-31 2012-03-31 Genome Long Fragment Deletion System Based on TALEN and ssODNs and Its Application Expired - Fee Related CN102618528B (en)

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Publication number Priority date Publication date Assignee Title
CN103409468A (en) * 2013-03-20 2013-11-27 中国科学院广州生物医药与健康研究院 Method for establishing immunodeficiency mouse model
CN105142396A (en) * 2013-01-14 2015-12-09 重组股份有限公司 Hornless livestock
US10920242B2 (en) 2011-02-25 2021-02-16 Recombinetics, Inc. Non-meiotic allele introgression

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CN102337292A (en) * 2011-09-27 2012-02-01 北京市农林科学院 System for deleting antibiotic marker gene from transgenic plant and application of system

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Cited By (3)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US10920242B2 (en) 2011-02-25 2021-02-16 Recombinetics, Inc. Non-meiotic allele introgression
CN105142396A (en) * 2013-01-14 2015-12-09 重组股份有限公司 Hornless livestock
CN103409468A (en) * 2013-03-20 2013-11-27 中国科学院广州生物医药与健康研究院 Method for establishing immunodeficiency mouse model

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