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CN102586442A - Specific primer and probe for assaying genetically modified corn MIR162 and application thereof - Google Patents

Specific primer and probe for assaying genetically modified corn MIR162 and application thereof Download PDF

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CN102586442A
CN102586442A CN2012100535924A CN201210053592A CN102586442A CN 102586442 A CN102586442 A CN 102586442A CN 2012100535924 A CN2012100535924 A CN 2012100535924A CN 201210053592 A CN201210053592 A CN 201210053592A CN 102586442 A CN102586442 A CN 102586442A
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mir162
gene
quantitative pcr
amplification
zssiib
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路兴波
张广远
孙红炜
李凡
杨淑珂
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Institute of Plant Protection of CAAS
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Abstract

The invention discloses a specific primer for assaying genetically modified corn MIR162, the sequence of which is shown as SEQ ID NO:1 and SEQ ID NO:2. The invention also discloses a fluorescently labeled probe for assaying genetically modified corn MIR162, the sequence of which is shown as SEQ ID NO:3, the 5' end of the probe is connected with a fluorescent reporter FAM, and the 3' end of the probe is connected with a fluorescent quencher Eclipse. The invention also discloses an assay method which utilizes the primer and the probe to carry out gene-specific qualitative PCR (Polymerase Chain Reaction), SYBR Green I real-time fluorogenic quantitative PCR and TaqMan probe real-time fluorogenic quantitative PCR to assay whether corn and related products thereof contain MIR162 transformation events, and an experiment proves that the assay method is sensitive, accurate, simple and reliable, and has a high application value and a wide market prospect.

Description

用于检测转基因玉米MIR162的特异性引物、探针及其应用Specific primers, probes and applications for detecting transgenic maize MIR162

技术领域 technical field

本发明涉及用于检测转基因玉米MIR162的特异性引物及探针,及其在基因特异性定性PCR、SYBR Green I实时荧光定量PCR和TaqMan探针实时荧光定量PCR检测玉米及其相关产品是否含有MIR162转化事件中的应用,属于分子生物学领域。  The invention relates to specific primers and probes for detecting transgenic corn MIR162, and its use in gene-specific qualitative PCR, SYBR Green I real-time fluorescent quantitative PCR and TaqMan probe real-time fluorescent quantitative PCR to detect whether corn and related products contain MIR162 Application in transformation events, belongs to the field of molecular biology. the

背景技术 Background technique

90年代初,市场上第一个转基因食品出现在美国,是一种保鲜番茄。随后十几年,转基因产产品陆续诞生,尤其在食品、医药方面取得很大成绩。由于转基因产品的生态安全和食用安全一直备受争议,相继有40多个国家和地区建立和实施了转基因标识制度。随着这些制度的建立与不断完善,人们对转基因检测技术的准确度和灵敏度提出了严格的要求,各种转基因产品的检测技术也成为了研究热点。  In the early 1990s, the first genetically modified food on the market appeared in the United States, which was a kind of preserved tomato. Over the next ten years, genetically modified products were born one after another, especially in food and medicine. Since the ecological safety and food safety of genetically modified products have been controversial, more than 40 countries and regions have successively established and implemented genetically modified labeling systems. With the establishment and continuous improvement of these systems, people put forward strict requirements on the accuracy and sensitivity of genetically modified detection technology, and the detection technology of various genetically modified products has also become a research hotspot. the

根据不同转基因产品的检测目的不同,鉴定转基因产品的主要方式有筛查法、基因特异性检测方法、转化体特异性检测方法和构建特异性检测方法。其中转化体特异性检测是特异性最强,应用最多的检测方法。从技术层面讲,在上述检测中应用最多的是PCR技术,包括定性PCR、巢式PCR、复合PCR、竞争性定量PCR和荧光定量PCR等。  According to the different detection purposes of different genetically modified products, the main ways to identify genetically modified products include screening methods, gene-specific detection methods, transformant-specific detection methods and construction-specific detection methods. Among them, transformant-specific detection is the most specific and most widely used detection method. From a technical point of view, PCR technology is the most widely used in the above detection, including qualitative PCR, nested PCR, multiplex PCR, competitive quantitative PCR and fluorescent quantitative PCR. the

转基因玉米MIR162是美国先正达公司开发出来的新型抗鳞翅目昆虫品种。申请人经过对现有专利和其他文献的检索,尚未发现任何关于转基因玉米MIR162转化体特异性定性PCR、SYBR Green I实时荧光定量PCR和TaqMan探针实时荧光定量PCR检测的报道。  Transgenic maize MIR162 is a new Lepidoptera-resistant insect variety developed by Syngenta Corporation of the United States. After searching the existing patents and other documents, the applicant has not found any reports on the specific qualitative PCR of transgenic maize MIR162 transformants, SYBR Green I real-time fluorescent quantitative PCR and TaqMan probe real-time fluorescent quantitative PCR detection. the

发明内容 Contents of the invention

针对上述现有技术,本发明提供了用于检测转基因玉米MIR162的特异性引物及探针,及其在基因特异性定性PCR、SYBR Green I实时荧光定量PCR和TaqMan探针实时荧光定量PCR检测玉米及其相关产品是否含有MIR162转化事件中的应用,属于分子生物学领域。  For the above-mentioned prior art, the present invention provides specific primers and probes for detecting transgenic corn MIR162, and its use in gene-specific qualitative PCR, SYBR Green I real-time fluorescent quantitative PCR and TaqMan probe real-time fluorescent quantitative PCR to detect corn Whether or not its related products contain MIR162 transformation events, belongs to the field of molecular biology. the

本发明是通过以下技术方案实现的:  The present invention is achieved through the following technical solutions:

一种用于检测转基因玉米MIR162的特异性引物,所述引物由上游引物和下游引物组成,其序列为:  A kind of specific primer for detecting transgenic corn MIR162, said primer is made up of upstream primer and downstream primer, and its sequence is:

MIR162-F:5′-CTGTCTAATAGTTTGAGTGA-3′;  MIR162-F: 5′-CTGTCTAATAGTTTGAGTGA-3′;

MIR162-R:5′-GTGACTCCCTTAATTCTC-3′;  MIR162-R: 5′-GTGACTCCCTTAATTCTC-3′;

如SEQ ID NO.1和SEQ ID NO.2所示。  As shown in SEQ ID NO.1 and SEQ ID NO.2. the

所述用于检测转基因玉米MIR162的特异性引物可以用于定性检测玉米及其相关产品是 否含有MIR162转化事件,具体应用时,步骤为:  The specific primers for detecting transgenic corn MIR162 can be used to qualitatively detect whether corn and its related products contain MIR162 transformation events. In specific applications, the steps are:

(1)提取待检测样品的基因组DNA,并以此为模板,利用MIR162-F和MIR162-R引物组合进行PCR扩增;  (1) Extract the genomic DNA of the sample to be detected, and use this as a template to perform PCR amplification using the combination of MIR162-F and MIR162-R primers;

(2)PCR扩增产物以琼脂糖凝胶电泳分离,EB染色后鉴定是否存在扩增产物;若存在扩增产物,则待检测样品中含有MIR162转化事件;若不存在扩增产物,则待检测样品中不含有MIR162转化事件。  (2) PCR amplified products were separated by agarose gel electrophoresis, and identified whether there were amplified products after EB staining; if there were amplified products, the sample to be detected contained MIR162 transformation events; The detection sample does not contain MIR162 transformation events. the

所述步骤(1)中,PCR程序为:95℃5min预变性;94℃30s,50℃30s,72℃30s,35个循环;72℃延伸7min。  In the step (1), the PCR program is: pre-denaturation at 95°C for 5 minutes; 35 cycles at 94°C for 30s, 50°C for 30s, and 72°C for 30s; and extension at 72°C for 7 minutes. the

所述用于检测转基因玉米MIR162的特异性引物可以用于SYBR Green I实时荧光定量PCR检测玉米及其相关产品是否含有MIR162转化事件,具体应用时,步骤为:  The specific primers for detecting transgenic corn MIR162 can be used for SYBR Green I real-time fluorescent quantitative PCR to detect whether corn and related products contain MIR162 transformation events. In specific applications, the steps are:

(1)建立MIR162转化体特异性引物的SYBR Green I实时荧光定量PCR标准曲线和zSSIIb基因的SYBR Green I实时荧光定量PCR标准曲线:  (1) Establish the SYBR Green I real-time fluorescent quantitative PCR standard curve of MIR162 transformant-specific primers and the SYBR Green I real-time fluorescent quantitative PCR standard curve of the zSSIIb gene:

①提取转基因玉米MIR162标准品基因组DNA进行梯度稀释,然后向各稀释液中加入MIR162转化事件的特异性引物,以及zSSIIb基因的国家标准引物,进行扩增;  ① Extract the genomic DNA of the transgenic maize MIR162 standard product for gradient dilution, and then add specific primers for the MIR162 transformation event and national standard primers for the zSSIIb gene to each dilution for amplification;

②扩增后,测定各稀释液中相关荧光标记物的Ct值,该Ct值与拷贝数的自然对数呈线性关系,据此绘制MIR162转化事件的定量PCR标准曲线和zSSIIb基因的定量PCR标准曲线;  ② After amplification, measure the Ct value of the relevant fluorescent marker in each dilution, the Ct value is linear with the natural logarithm of the copy number, and draw the quantitative PCR standard curve of the MIR162 transformation event and the quantitative PCR standard of the zSSIIb gene accordingly curve;

(2)提取待检测样品基因组DNA,得基因组DNA提取液,然后向基因组DNA提取液中加入MIR162基因的特异性引物,以及zSSIIb基因的国家标准引物,进行扩增;扩增后,测定基因组DNA提取液中相关荧光标记物的Ct值,然后根据上述绘制的MIR162基因的定量PCR标准曲线和zSSIIb基因的定量PCR标准曲线,计算出相应的拷贝数,则转基因玉米MIR162基因的拷贝数与玉米内标准基因zSSIIb基因的拷贝数之比,即为待检测样品中转基因玉米MIR162的百分含量。  (2) Extract the genomic DNA of the sample to be detected to obtain the genomic DNA extract, then add the specific primers of the MIR162 gene and the national standard primers of the zSSIIb gene to the genomic DNA extract to amplify; after the amplification, measure the genomic DNA The Ct value of the relevant fluorescent marker in the extract, then according to the quantitative PCR standard curve of the above-mentioned drawn MIR162 gene and the quantitative PCR standard curve of the zSSIIb gene, calculate the corresponding copy number, then the copy number of the transgenic maize MIR162 gene is the same as that in the maize The ratio of the copy number of the standard gene zSSIIb gene is the percentage content of the transgenic maize MIR162 in the sample to be detected. the

所述步骤(1)①和(2)中,zSSIIb引物序列(国家标准)如下:  In described step (1) 1. and (2), zSSIIb primer sequence (national standard) is as follows:

zSSIIb-F:5′-CGGTGGATGCTAAGGCTGATG-3′;  zSSIIb-F: 5'-CGGTGGATGCTAAGGCTGATG-3';

zSSIIb-R:5′-AAAGGGCCAGGTTCATTATCCTC-3′。  zSSIIb-R: 5'-AAAGGGCCAGGTTCATTATTCTC-3'. the

所述步骤(1)①和(2)中,扩增的参数如下:扩增反应体积为20uL,2×Premix Ex Taq(Rox)10uL,浓度为10umol/L的Forward primer 0.4uL,浓度为10umol/L的Reverse primer0.4uL,ddH2O 8.2uL,DNA模板1uL;  In the steps (1)① and (2), the amplification parameters are as follows: the amplification reaction volume is 20uL, 2×Premix Ex Taq (Rox) 10uL, the concentration is 0.4uL of Forward primer of 10umol/L, and the concentration is 10umol /L Reverse primer 0.4uL, ddH2O 8.2uL, DNA template 1uL;

扩增反应条件:95℃10min预变性;95℃15s,50℃30s,72℃30s,在72℃收集荧光信号, 共计40个循环。  Amplification reaction conditions: pre-denaturation at 95°C for 10 minutes; 15s at 95°C, 30s at 50°C, 30s at 72°C, and fluorescence signal collection at 72°C, a total of 40 cycles. the

一种用于检测转基因玉米MIR162的荧光标记探针,序列为:MIR162-P:FAM-5′-CAGATTGTCGTTTCCCGCCTTC-3′-Eclipse,如SEQ ID NO.3所示,探针的5′端连接一个荧光报告集团FAM,3′端连接有一个荧光淬灭集团Eclipse。  A fluorescently labeled probe for detecting transgenic corn MIR162, the sequence is: MIR162-P: FAM-5'-CAGATTGTCGTTTCCCGCCTTC-3'-Eclipse, as shown in SEQ ID NO.3, the 5' end of the probe is connected to a The fluorescent reporting group FAM is connected to a fluorescent quenching group Eclipse at the 3′ end. the

上述用于检测转基因玉米MIR162的特异性引物及用于检测转基因玉米MIR162的荧光标记探针,可以用于TaqMan探针实时荧光定量PCR检测玉米及其相关产品是否含有MIR162转化事件,具体应用时,步骤为:  The above-mentioned specific primers for detecting transgenic corn MIR162 and fluorescently labeled probes for detecting transgenic corn MIR162 can be used for real-time fluorescent quantitative PCR of TaqMan probes to detect whether corn and related products contain MIR162 transformation events. In specific applications, The steps are:

(1)建立MIR162转化体特异性引物的TaqMan探针实时荧光定量PCR标准曲线和zSSIIb基因的TaqMan探针实时荧光定量PCR标准曲线:  (1) Establish the TaqMan probe real-time fluorescent quantitative PCR standard curve of the MIR162 transformant specific primer and the TaqMan probe real-time fluorescent quantitative PCR standard curve of the zSSIIb gene:

①提取转基因玉米MIR162标准品基因组DNA进行梯度稀释,然后向各稀释液中加入MIR162转化事件的特异性引物和荧光标记探针,以及zSSIIb基因的国家标准引物和荧光标记探针,进行扩增;  ① Extract the genomic DNA of the transgenic corn MIR162 standard product for gradient dilution, and then add specific primers and fluorescently labeled probes for the MIR162 transformation event, as well as national standard primers and fluorescently labeled probes for the zSSIIb gene, to each dilution for amplification;

②扩增后,测定各稀释液中相关荧光标记物的Ct值,该Ct值与拷贝数的自然对数呈线性关系,据此绘制MIR162转化事件的定量PCR标准曲线和zSSIIb基因的定量PCR标准曲线;  ② After amplification, measure the Ct value of the relevant fluorescent marker in each dilution, the Ct value is linear with the natural logarithm of the copy number, and draw the quantitative PCR standard curve of the MIR162 transformation event and the quantitative PCR standard of the zSSIIb gene accordingly curve;

(2)提取待检测样品基因组DNA,得基因组DNA提取液,然后向基因组DNA提取液中加入MIR162基因的特异性引物和荧光标记探针,以及zSSIIb基因的国家标准引物和荧光标记探针,进行扩增;扩增后,测定基因组DNA提取液中相关荧光标记物的Ct值,然后根据上述绘制的MIR162基因的定量PCR标准曲线和zSSIIb基因的定量PCR标准曲线,计算出相应的拷贝数,则转基因玉米MIR162基因的拷贝数与玉米内标准基因zSSIIb基因的拷贝数之比,即为待检测样品中转基因玉米MIR162的百分含量。  (2) Extract the genomic DNA of the sample to be detected to obtain a genomic DNA extract, then add specific primers and fluorescently labeled probes of the MIR162 gene, and national standard primers and fluorescently labeled probes of the zSSIIb gene to the genomic DNA extract, and carry out Amplification; after amplification, measure the Ct value of the relevant fluorescent marker in the genomic DNA extract, then calculate the corresponding copy number according to the quantitative PCR standard curve of the MIR162 gene drawn above and the quantitative PCR standard curve of the zSSIIb gene, then The ratio of the copy number of the transgenic maize MIR162 gene to the copy number of the maize standard gene zSSIIb is the percentage of the transgenic maize MIR162 in the sample to be tested. the

所述步骤(1)①和(2)中,zSSIIb引物和探针序列(国家标准)如下:  In described step (1) 1. and (2), zSSIIb primer and probe sequence (national standard) are as follows:

zSSIIb-F:5′-CGGTGGATGCTAAGGCTGATG-3′;  zSSIIb-F: 5'-CGGTGGATGCTAAGGCTGATG-3';

zSSIIb-R:5′-AAAGGGCCAGGTTCATTATCCTC-3′;  zSSIIb-R: 5'-AAAGGGCCAGGTTCATTATCCTC-3';

zSSIIb-P:FAM-5′-TAAGGAGCACTCGCCGCCGCATCTG-3′-TAMRA。  zSSIIb-P: FAM-5'-TAAGGAGCACTCGCCGCCGCATCTG-3'-TAMRA. the

所述步骤(1)①和(2)中,扩增的参数如下:扩增反应体积为20uL,2×Premix Ex Taq(Rox)12.5uL,浓度为10umol/L的Forward primer 1uL,浓度为10umol/L的Reverse primer 1uL,浓度为10umol/L的TaqMan probe0.5uL,ddH2O 4uL,DNA模板1uL;  In the steps (1)① and (2), the amplification parameters are as follows: the amplification reaction volume is 20uL, 2×Premix Ex Taq (Rox) 12.5uL, the concentration is 10umol/L Forward primer 1uL, the concentration is 10umol /L Reverse primer 1uL, TaqMan probe 0.5uL with a concentration of 10umol/L, ddH2O 4uL, DNA template 1uL;

扩增反应条件:95℃10min预变性;95℃15s,50℃30s,72℃30s,在72℃收集荧光信号,共计45个循环。  Amplification reaction conditions: pre-denaturation at 95°C for 10 minutes; 15s at 95°C, 30s at 50°C, 30s at 72°C, and fluorescence signal collection at 72°C for a total of 45 cycles. the

本发明设计了针对转基因玉米MIR162转化事件外源插入载体旁侧基因的引物与探针序列,建立了转基因玉米MIR162转化体特异性定性PCR检测方法、SYBR Green I实时荧光定量PCR检测方法和TaqMan探针实时荧光定量PCR检测方法,该检测方法经实验验证,灵敏、准确、简单、可靠,具有广阔的应用价值与市场前景。  The present invention designs primers and probe sequences aimed at the side genes of the transgenic corn MIR162 transformation event, and establishes a specific qualitative PCR detection method for the transgenic corn MIR162 transformant, a SYBR Green I real-time fluorescent quantitative PCR detection method and a TaqMan detection method. A real-time fluorescent quantitative PCR detection method, which has been verified by experiments, is sensitive, accurate, simple and reliable, and has broad application value and market prospects. the

附图说明 Description of drawings

图1为实施例1中转基因玉米MIR162转化体特异性定性PCR扩增结果电泳示意图。  1 is a schematic diagram of the electrophoresis of the specific qualitative PCR amplification results of the transgenic maize MIR162 transformant in Example 1. the

图2为实施例2中内标准基因zSSIIb的SYBR Green I实时荧光定量PCR标准曲线。  Fig. 2 is the SYBR Green I real-time fluorescent quantitative PCR standard curve of internal standard gene zSSIIb in embodiment 2. the

图3为实施例2中转基因玉米MIR162转化体SYBR Green I实时荧光定量PCR标准曲线。  Fig. 3 is the real-time fluorescent quantitative PCR standard curve of transgenic maize MIR162 transformant SYBR Green I in embodiment 2. the

图4为实施例3中内标准基因zSSIIb的TaqMan探针实时荧光定量PCR标准曲线。  Fig. 4 is the TaqMan probe real-time fluorescence quantitative PCR standard curve of the internal standard gene zSSIIb in Example 3. the

图5为实施例3中转基因玉米MIR162转化体TaqMan探针实时荧光定量PCR标准曲线。  Fig. 5 is the real-time fluorescent quantitative PCR standard curve of the TaqMan probe of the transgenic maize MIR162 transformant in Example 3. the

具体实施方式 Detailed ways

下面结合附图对本发明作进一步的说明。  The present invention will be further described below in conjunction with the accompanying drawings. the

实施例1转基因玉米MIR162转化体特异性定性PCR检测方法  Embodiment 1 transgenic maize MIR162 transformant-specific qualitative PCR detection method

引物由大连Takara公司合成,稀释成10umol/L备用。合成的引物序列如下:  Primers were synthesized by Dalian Takara Company and diluted to 10umol/L for use. The synthetic primer sequences are as follows:

MIR162-F:5′-CTGTCTAATAGTTTGAGTGA-3′;  MIR162-F: 5′-CTGTCTAATAGTTTGAGTGA-3′;

MIR162-R:5′-GTGACTCCCTTAATTCTC-3′。  MIR162-R: 5'-GTGACTCCCTTAATTCTC-3'. the

分别提取转基因玉米MIR162、MON810、NK603、Bt176、MON88017、GA21、TC1507、MIR604、Bt11,转基因大豆GTS40-3-2、MON87701,非转基因大豆1138-2,转基因棉花MON88913、LLcotton25、MON531、MON1445,转基因水稻TT51、科丰6号,非转基因玉米郑单958基因DNA为模板,分别用MIR162-F和MIR162-R引物组合进行PCR扩增。PCR程序为:95℃5min预变性;94℃30s,50℃30s,72℃30s,35个循环;72℃延伸7min。PCR扩增产物以琼脂糖凝胶电泳分离,EB染色后鉴定是否存在扩增产物。  Extract transgenic corn MIR162, MON810, NK603, Bt176, MON88017, GA21, TC1507, MIR604, Bt11, transgenic soybean GTS40-3-2, MON87701, non-transgenic soybean 1138-2, transgenic cotton MON88913, LLcotton25, MON531, MON1445, transgenic Rice TT51, Kefeng 6, and non-transgenic maize Zhengdan 958 gene DNA were used as templates, and PCR amplification was performed with MIR162-F and MIR162-R primer combinations, respectively. The PCR program was: 95°C 5min pre-denaturation; 94°C 30s, 50°C 30s, 72°C 30s, 35 cycles; 72°C extension 7min. PCR amplified products were separated by agarose gel electrophoresis, and the existence of amplified products was identified after EB staining. the

结果:利用所设计的引物以提取的基因组为模板进行PCR扩增,结果如图1所示,由图可见,只有转基因玉米MIR162基因组成功扩增出94bp特异性产物,而其他转基因和非转基因样品模板都没有可观察到的扩增产物。由此证明,该引物具有良好的特异性,适合于转基因玉米MIR162转化体特异性的定性检测。  Results: PCR amplification was carried out using the designed primers and the extracted genome as a template. The results are shown in Figure 1. It can be seen from the figure that only the transgenic maize MIR162 genome successfully amplified a 94bp specific product, while other transgenic and non-transgenic samples None of the templates had observable amplification products. It is thus proved that the primer has good specificity and is suitable for the qualitative detection of the specificity of the transgenic maize MIR162 transformant. the

实施例2转基因玉米MIR162转化体特异性SYBR Green I实时荧光定量PCR检测方法  Example 2 Transgenic maize MIR162 transformant-specific SYBR Green I real-time fluorescent quantitative PCR detection method

提取转基因玉米MIR162标准品基因组DNA,按5倍倍比分别稀释至50,5-1,5-2,5-3,5-4;相应的拷贝数设为100000,20000,4000,800,160,每个浓度设3个重复,检测扩增的重复性。  Extract the genomic DNA of the transgenic corn MIR162 standard product, and dilute it to 50 , 5-1 , 5-2 , 5-3 , 5-4 according to the 5-fold ratio; the corresponding copy numbers are set to 100000, 20000, 4000, 800, 160, 3 replicates were set for each concentration to check the repeatability of the amplification.

引物由大连Takara公司合成,稀释成10umol/L备用。合成的MIR162引物序列如下:  Primers were synthesized by Dalian Takara Company and diluted to 10umol/L for use. The synthetic MIR162 primer sequence is as follows:

MIR162-F:5′-CTGTCTAATAGTTTGAGTGA-3′;  MIR162-F: 5′-CTGTCTAATAGTTTGAGTGA-3′;

MIR162-R:5′-GTGACTCCCTTAATTCTC-3′。  MIR162-R: 5'-GTGACTCCCTTAATTCTC-3'. the

玉米内标引物(zSSIIb)采用国家标准引物,其序列如下:  Maize internal standard primer (zSSIIb) adopts national standard primer, its sequence is as follows:

zSSIIb-F:5′-CGGTGGATGCTAAGGCTGATG-3′;  zSSIIb-F: 5'-CGGTGGATGCTAAGGCTGATG-3';

zSSIIb-R:5′-AAAGGGCCAGGTTCATTATCCTC-3′。  zSSIIb-R: 5'-AAAGGGCCAGGTTCATTATTCTC-3'. the

扩增反应体积为20uL,2×Premix Ex Taq(Rox)10uL,浓度为10umol/L的Forward primer0.4uL,浓度为10umol/L的Reverse primer 0.4uL,ddH2O 8.2uL,DNA模板1uL。扩增反应条件:95℃10min预变性;95℃15s,50℃30s,72℃30s,在72℃收集荧光信号,共计45个循环。每个试样重复3次,同时设立无菌双蒸水(ddH2O,空白)和非转基因样品(郑单958,阴性)对照。  The amplification reaction volume is 20uL, 2×Premix Ex Taq (Rox) 10uL, Forward primer 0.4uL with a concentration of 10umol/L, Reverse primer 0.4uL with a concentration of 10umol/L, ddH2O 8.2uL, DNA template 1uL. Amplification reaction conditions: pre-denaturation at 95°C for 10 minutes; 15s at 95°C, 30s at 50°C, 30s at 72°C, and fluorescence signal collection at 72°C for a total of 45 cycles. Each sample was repeated 3 times, and a sterile double distilled water (ddH 2 O, blank) and a non-transgenic sample (Zhengdan 958, negative) controls were set up at the same time.

结果:通过对不同MIR162标准品拷贝数为100000,20000,4000,800,160的DNA进行SYBR Green I实时荧光定量PCR扩增,计算机软件自动生成标准曲线,纵坐标为Ct,横坐标为起始拷贝数的自然对数。根据标准曲线所得的线性计算公式,通过对不同转基因含量的转基因玉米MIR162标准品(1%,0.5%,0.1%,0.05%,0.01%)、阳性样品、阴性样品及空白对照的测定,将样品的Ct值代入公式,即可得到待测样品转基因成分的百分含量。  Results: Through SYBR Green I real-time fluorescent quantitative PCR amplification of DNA with copy numbers of 100,000, 20,000, 4,000, 800, and 160 copies of different MIR162 standard products, the computer software automatically generates a standard curve, with the ordinate being Ct and the abscissa being the start Natural logarithm of copy number. According to the linear calculation formula obtained by the standard curve, through the determination of the transgenic maize MIR162 standard substance (1%, 0.5%, 0.1%, 0.05%, 0.01%), positive samples, negative samples and blank control with different transgenic contents, the samples Substituting the Ct value of the formula into the formula, the percentage of genetically modified ingredients in the sample to be tested can be obtained. the

对玉米内标准基因zSSIIb和转基因玉米MIR162的转化体特异性引物对同一组标准品DNA和不同百分含量的转基因玉米DNA进行SYBR Green I实时荧光定量PCR扩增,分别得到PCR扩增曲线,并由系统软件自动生成标准曲线。玉米内标准基因zSSIIb的标准曲线如图2所示,该曲线的斜率为-3.25,相关系数R2为0.999。转基因玉米MIR162的转化体特异性引物的标准曲线如图3所示,该曲线的斜率为-3.332,相关系数R2为0.999.因此只要获得未知样品的Ct值,即可从标准曲线上计算出该样品的起始拷贝数。根据公式:  The transformant-specific primers of the standard gene zSSIIb in maize and the transgenic maize MIR162 were amplified by SYBR Green I real-time fluorescence quantitative PCR on the same set of standard DNA and different percentages of transgenic maize DNA, and PCR amplification curves were obtained respectively, and The standard curve is automatically generated by the system software. The standard curve of the standard gene zSSIIb in maize is shown in Figure 2, the slope of the curve is -3.25, and the correlation coefficient R2 is 0.999. The standard curve of the transformant-specific primers of transgenic maize MIR162 is shown in Figure 3. The slope of the curve is -3.332, and the correlation coefficient R2 is 0.999. Therefore, as long as the Ct value of the unknown sample is obtained, the Ct value can be calculated from the standard curve. The starting copy number of the sample. According to the formula:

样品中转基因玉米MIR162含量=(外源基因MIR162拷贝数/内标基因zSSIIb拷贝数)×100%  Content of transgenic corn MIR162 in the sample = (copy number of exogenous gene MIR162/copy number of internal standard gene zSSIIb)×100%

可以计算出待测样品中转基因成分MIR162的百分含量。  The percentage content of the transgenic component MIR162 in the test sample can be calculated. the

实施例3转基因玉米MIR162转化体特异性TaqMan探针实时荧光定量PCR检测方法  Example 3 Transgenic maize MIR162 transformant-specific TaqMan probe real-time fluorescent quantitative PCR detection method

提取转基因玉米MIR162标准品基因组DNA,按5倍倍比分别稀释至50,5-1,5-2,5-3,5-4;相应的拷贝数设为100000,20000,4000,800,160,每个浓度设3个重复,检测扩增的重复性。  Extract the genomic DNA of the transgenic corn MIR162 standard product, and dilute it to 50 , 5-1 , 5-2 , 5-3 , 5-4 according to the 5-fold ratio; the corresponding copy numbers are set to 100000, 20000, 4000, 800, 160, three replicates were set for each concentration to check the repeatability of the amplification.

引物和探针由大连Takara公司合成,稀释成10umol/L备用。合成的MIR162引物与探 针序列如下:  Primers and probes were synthesized by Dalian Takara Company and diluted to 10umol/L for use. The synthetic MIR162 primer and probe sequences are as follows:

MIR162-F:5′-CTGTCTAATAGTTTGAGTGA-3′;  MIR162-F: 5′-CTGTCTAATAGTTTGAGTGA-3′;

MIR162-R:5′-GTGACTCCCTTAATTCTC-3′;  MIR162-R: 5′-GTGACTCCCTTAATTCTC-3′;

MIR162-P:FAM-5′-CAGATTGTCGTTTCCCGCCTTC-3′-Eclipse。  MIR162-P: FAM-5'-CAGATTGTCGTTTCCCGCCTTC-3'-Eclipse. the

玉米内标引物与探针(zSSIIb)采用国家标准引物与探针,其序列如下:  Maize internal standard primers and probes (zSSIIb) adopt national standard primers and probes, and their sequences are as follows:

zSSIIb-F:5′-CGGTGGATGCTAAGGCTGATG-3′;  zSSIIb-F: 5'-CGGTGGATGCTAAGGCTGATG-3';

zSSIIb-R:5′-AAAGGGCCAGGTTCATTATCCTC-3′;  zSSIIb-R: 5'-AAAGGGCCAGGTTCATTATCCTC-3';

zSSIIb-P:FAM-5′-TAAGGAGCACTCGCCGCCGCATCTG-3′-TAMRA。  zSSIIb-P: FAM-5'-TAAGGAGCACTCGCCGCCGCATCTG-3'-TAMRA. the

扩增反应体积为20uL,2×Premix Ex Taq(Rox)12.5uL,浓度为10umol/L的Forwardprimer 1uL,浓度为10umol/L的Reverse primer 1uL,浓度为10umol/L的TaqMan probe0.5uL,ddH2O 4uL,DNA模板1uL;扩增反应条件:95℃10min预变性;95℃15s,50℃30s,72℃30s,在72℃收集荧光信号,共计45个循环,每个试样重复3次,同时设立无菌双蒸水(ddH2O,空白)和非转基因样品(郑单958,阴性)对照。  The amplification reaction volume is 20uL, 2×Premix Ex Taq (Rox) 12.5uL, the concentration of 10umol/L Forwardprimer 1uL, the concentration of 10umol/L Reverse primer 1uL, the concentration of 10umol/L TaqMan probe 0.5uL, ddH2O 4uL , DNA template 1uL; amplification reaction conditions: 95°C 10min pre-denaturation; 95°C 15s, 50°C 30s, 72°C 30s, collect fluorescence signal at 72°C, a total of 45 cycles, repeat 3 times for each sample, set up at the same time Sterile double distilled water (ddH 2 O, blank) and non-transgenic samples (Zhengdan 958, negative) were used as controls.

结果:通过对不同MIR162标准品拷贝数为100000,20000,4000,800,160的DNA进行TaqMan实时荧光定量PCR扩增,计算机软件自动生成标准曲线,纵坐标为Ct,横坐标为起始拷贝数的自然对数。根据标准曲线所得的线性计算公式,通过对不同转基因含量的转基因玉米MIR162标准品(1%,0.5%,0.1%,0.05%,0.01%)、阳性样品、阴性样品及空白对照的测定,将样品的Ct值代入公式,即可得到待测样品转基因成分的百分含量。  Results: Through TaqMan real-time fluorescent quantitative PCR amplification of DNA with copy numbers of 100000, 20000, 4000, 800, and 160 for different MIR162 standard products, the computer software automatically generates a standard curve, the vertical axis is Ct, and the horizontal axis is the initial copy number The natural logarithm of . According to the linear calculation formula obtained by the standard curve, through the determination of the transgenic maize MIR162 standard substance (1%, 0.5%, 0.1%, 0.05%, 0.01%), positive samples, negative samples and blank control with different transgenic contents, the samples Substituting the Ct value of the formula into the formula, the percentage of genetically modified ingredients in the sample to be tested can be obtained. the

对玉米内标准基因zSSIIb和转基因玉米MIR162的转化体特异性引物对同一组标准品DNA和不同百分含量的转基因玉米DNA进行TaqMan实时荧光定量PCR扩增,分别得到PCR扩增曲线,并由系统软件自动生成标准曲线。玉米内标准基因zSSIIb的标准曲线如图4所示,该曲线的斜率为-3.557,相关系数R2为0.999。转基因玉米MIR162的转化体特异性引物的标准曲线如图5所示,该曲线的斜率为-3.556,相关系数R2为0.997.因此只要获得未知样品的Ct值,即可从标准曲线上计算出该样品的起始拷贝数。根据公式:  The specific primers for transformants of the standard gene zSSIIb in maize and transgenic maize MIR162 were used to perform TaqMan real-time fluorescent quantitative PCR amplification on the same set of standard DNA and different percentages of transgenic maize DNA, and PCR amplification curves were obtained respectively, and analyzed by the system The software automatically generates a standard curve. The standard curve of the standard gene zSSIIb in maize is shown in Figure 4, the slope of the curve is -3.557, and the correlation coefficient R 2 is 0.999. The standard curve of the transformant-specific primers of transgenic maize MIR162 is shown in Figure 5. The slope of the curve is -3.556, and the correlation coefficient R2 is 0.997. Therefore, as long as the Ct value of the unknown sample is obtained, the Ct value can be calculated from the standard curve. The starting copy number of the sample. According to the formula:

样品中转基因玉米MIR162含量=(外源基因MIR162拷贝数/内标基因zSSIIb拷贝数)×100%  Content of transgenic corn MIR162 in the sample = (copy number of exogenous gene MIR162/copy number of internal standard gene zSSIIb)×100%

可以计算出待测样品中转基因成分MIR162的百分含量。  The percentage content of the transgenic component MIR162 in the test sample can be calculated. the

以上结果可以证明,本发明为转基因玉米MIR162的定性PCR、SYBR Green I实时荧光定量PCR和TaqMan探针实时荧光定量PCR检测提供了简单、可靠的测定方法,可以用于转基因玉米MIR162的检测。本发明为转基因标识提供了一种强有力的技术支撑,为转基因产品 的控制提供了必要的手段。  The above results can prove that the present invention provides a simple and reliable assay method for qualitative PCR, SYBR Green I real-time fluorescent quantitative PCR and TaqMan probe real-time fluorescent quantitative PCR detection of transgenic maize MIR162, and can be used for the detection of transgenic maize MIR162. The invention provides a strong technical support for transgenic labeling, and provides a necessary means for the control of genetically modified products. the

Figure IDA0000140353290000011
Figure IDA0000140353290000011

Figure IDA0000140353290000021
Figure IDA0000140353290000021

Claims (10)

1.一种用于检测转基因玉米MIR162的特异性引物,其特征在于:所述引物由上游引物和下游引物组成,其序列如SEQ ID NO.1和SEQ ID NO.2所示。1. A specific primer for detecting transgenic corn MIR162, characterized in that: said primer is made up of upstream primer and downstream primer, and its sequence is as shown in SEQ ID NO.1 and SEQ ID NO.2. 2.权利要求1所述的用于检测转基因玉米MIR162的特异性引物在定性检测玉米及其相关产品是否含有MIR162转化事件中的应用。2. The application of the specific primers for detecting transgenic maize MIR162 described in claim 1 in the qualitative detection of whether maize and its related products contain MIR162 transformation events. 3.权利要求1所述的用于检测转基因玉米MIR162的特异性引物在SYBR Green I实时荧光定量PCR检测玉米及其相关产品是否含有MIR162转化事件中的应用。3. the application of the specific primer for detecting transgenic corn MIR162 described in claim 1 in whether SYBR Green I real-time fluorescent quantitative PCR detects corn and related products thereof contains MIR162 conversion event. 4.一种用于检测转基因玉米MIR162的荧光标记探针,其特征在于:所述探针的序列如SEQID NO.3所示,探针的5′端连接一个荧光报告集团FAM,3′端连接有一个荧光淬灭集团Eclipse。4. A fluorescently labeled probe for detecting transgenic corn MIR162, characterized in that: the sequence of the probe is as shown in SEQID NO.3, the 5' end of the probe is connected to a fluorescent reporter group FAM, and the 3' end Connect Eclipse with a fluorescence quencher group. 5.权利要求1所述的用于检测转基因玉米MIR162的特异性引物及权利要求4所述的用于检测转基因玉米MIR162的荧光标记探针在TaqMan探针实时荧光定量PCR检测玉米及其相关产品是否含有MIR162转化事件中的应用。5. the specific primer for detecting transgenic corn MIR162 described in claim 1 and the fluorescently labeled probe for detecting transgenic corn MIR162 described in claim 4 detect corn and its related products in TaqMan probe real-time fluorescent quantitative PCR Does it contain the application of MIR162 transformation events. 6.一种定性检测玉米及其相关产品是否含有MIR162转化事件的方法,其特征在于:步骤为:6. A method for qualitatively detecting whether corn and its related products contain MIR162 transformation events, characterized in that: the steps are: (1)提取待检测样品的基因组DNA,并以此为模板,利用MIR162-F和MIR162-R引物组合进行PCR扩增;(1) Extract the genomic DNA of the sample to be detected, and use this as a template to perform PCR amplification using the combination of MIR162-F and MIR162-R primers; (2)PCR扩增产物以琼脂糖凝胶电泳分离,EB染色后鉴定是否存在扩增产物;若存在扩增产物,则待检测样品中含有MIR162转化事件;若不存在扩增产物,则待检测样品中不含有MIR162转化事件。(2) PCR amplified products were separated by agarose gel electrophoresis, and identified whether there were amplified products after EB staining; if there were amplified products, the sample to be detected contained MIR162 transformation events; The detection sample does not contain MIR162 transformation events. 7.一种SYBR Green I实时荧光定量PCR检测玉米及其相关产品是否含有MIR162转化事件的方法,其特征在于:步骤为:7. A kind of SYBR Green I real-time fluorescent quantitative PCR detects the method whether corn and related products contain MIR162 conversion event, it is characterized in that: the step is: (1)建立MIR162转化体特异性引物的SYBR Green I实时荧光定量PCR标准曲线和zSSIIb基因的SYBR Green I实时荧光定量PCR标准曲线:(1) Establish the SYBR Green I real-time fluorescent quantitative PCR standard curve of the MIR162 transformant-specific primers and the SYBR Green I real-time fluorescent quantitative PCR standard curve of the zSSIIb gene: ①提取转基因玉米MIR162标准品基因组DNA进行梯度稀释,然后向各稀释液中加入MIR162转化事件的特异性引物,以及zSSIIb基因的国家标准引物,进行扩增;① Extract the genomic DNA of the transgenic maize MIR162 standard product for gradient dilution, and then add specific primers for the MIR162 transformation event and national standard primers for the zSSIIb gene to each dilution for amplification; ②扩增后,测定各稀释液中相关荧光标记物的Ct值,该Ct值与拷贝数的自然对数呈线性关系,据此绘制MIR162转化事件的定量PCR标准曲线和zSSIIb基因的定量PCR标准曲线;② After amplification, measure the Ct value of the relevant fluorescent marker in each dilution, the Ct value is linear with the natural logarithm of the copy number, and draw the quantitative PCR standard curve of the MIR162 transformation event and the quantitative PCR standard of the zSSIIb gene accordingly curve; (2)提取待检测样品基因组DNA,得基因组DNA提取液,然后向基因组DNA提取液中加入MIR162基因的特异性引物,以及zSSIIb基因的国家标准引物,进行扩增;扩增后,测定基因组DNA提取液中相关荧光标记物的Ct值,然后根据上述绘制的MIR162基因的定量PCR标准曲线和zSSIIb基因的定量PCR标准曲线,计算出相应的拷贝数,则转基因玉米MIR162基因的拷贝数与玉米内标准基因zSSIIb基因的拷贝数之比,即为待检测样品中转基因玉米MIR162的百分含量。(2) Extract the genomic DNA of the sample to be detected to obtain the genomic DNA extract, then add the specific primers of the MIR162 gene and the national standard primers of the zSSIIb gene to the genomic DNA extract to amplify; after the amplification, measure the genomic DNA The Ct value of the relevant fluorescent marker in the extract, then according to the quantitative PCR standard curve of the above-mentioned drawn MIR162 gene and the quantitative PCR standard curve of the zSSIIb gene, calculate the corresponding copy number, then the copy number of the transgenic maize MIR162 gene is the same as that in the maize The ratio of the copy number of the standard gene zSSIIb gene is the percentage content of the transgenic maize MIR162 in the sample to be detected. 8.根据权利要求7所述的方法,其特征在于:所述步骤(1)①和(2)中,扩增的参数如下:扩增反应体积为20uL,2×Premix Ex Taq(Rox)10uL,浓度为10umol/L的Forwardprimer 0.4uL,浓度为10umol/L的Reverse primer 0.4uL,ddH2O 8.2uL,DNA模板1uL;扩增反应条件:95℃10min预变性;95℃15s,50℃30s,72℃30s,在72℃收集荧光信号,共计40个循环。8. The method according to claim 7, characterized in that: in the steps (1) ① and (2), the parameters of the amplification are as follows: the amplification reaction volume is 20uL, 2×Premix Ex Taq (Rox) 10uL , 0.4uL of Forwardprimer with a concentration of 10umol/L, 0.4uL of Reverse primer with a concentration of 10umol/L, 8.2uL of ddH2O, and 1uL of DNA template; amplification reaction conditions: 95℃10min pre-denaturation; 95℃15s, 50℃30s, 72 °C for 30s, and collect fluorescence signals at 72 °C for a total of 40 cycles. 9.一种TaqMan探针实时荧光定量PCR检测玉米及其相关产品是否含有MIR162转化事件的方法,其特征在于:步骤为:9. A TaqMan probe real-time fluorescent quantitative PCR detection method for whether corn and related products contain MIR162 transformation events, characterized in that: the steps are: (1)建立MIR162转化体特异性引物的TaqMan探针实时荧光定量PCR标准曲线和zSSIIb基因的TaqMan探针实时荧光定量PCR标准曲线:(1) Establish the TaqMan probe real-time fluorescent quantitative PCR standard curve of the MIR162 transformant specific primer and the TaqMan probe real-time fluorescent quantitative PCR standard curve of the zSSIIb gene: ①提取转基因玉米MIR162标准品基因组DNA进行梯度稀释,然后向各稀释液中加入MIR162转化事件的特异性引物和荧光标记探针,以及zSSIIb基因的国家标准引物和荧光标记探针,进行扩增;① Extract the genomic DNA of the transgenic corn MIR162 standard product for gradient dilution, and then add specific primers and fluorescently labeled probes for the MIR162 transformation event, as well as national standard primers and fluorescently labeled probes for the zSSIIb gene, to each dilution for amplification; ②扩增后,测定各稀释液中相关荧光标记物的Ct值,该Ct值与拷贝数的自然对数呈线性关系,据此绘制MIR162转化事件的定量PCR标准曲线和zSSIIb基因的定量PCR标准曲线;② After amplification, measure the Ct value of the relevant fluorescent marker in each dilution, the Ct value is linear with the natural logarithm of the copy number, and draw the quantitative PCR standard curve of the MIR162 transformation event and the quantitative PCR standard of the zSSIIb gene accordingly curve; (2)提取待检测样品基因组DNA,得基因组DNA提取液,然后向基因组DNA提取液中加入MIR162基因的特异性引物和荧光标记探针,以及zSSIIb基因的国家标准引物和荧光标记探针,进行扩增;扩增后,测定基因组DNA提取液中相关荧光标记物的Ct值,然后根据上述绘制的MIR162基因的定量PCR标准曲线和zSSIIb基因的定量PCR标准曲线,计算出相应的拷贝数,则转基因玉米MIR162基因的拷贝数与玉米内标准基因zSSIIb基因的拷贝数之比,即为待检测样品中转基因玉米MIR162的百分含量。(2) Extract the genomic DNA of the sample to be detected to obtain a genomic DNA extract, then add specific primers and fluorescently labeled probes of the MIR162 gene, and national standard primers and fluorescently labeled probes of the zSSIIb gene to the genomic DNA extract, and carry out Amplification; after amplification, measure the Ct value of the relevant fluorescent marker in the genomic DNA extract, then calculate the corresponding copy number according to the quantitative PCR standard curve of the MIR162 gene drawn above and the quantitative PCR standard curve of the zSSIIb gene, then The ratio of the copy number of the transgenic maize MIR162 gene to the copy number of the maize standard gene zSSIIb is the percentage of the transgenic maize MIR162 in the sample to be tested. 10.根据权利要求9所述的方法,其特征在于:所述步骤(1)①和(2)中,扩增的参数如下:扩增反应体积为20uL,2×Premix Ex Taq(Rox)12.5uL,浓度为10umol/L的Forwardprimer 1uL,浓度为10umol/L的Reverse primer 1uL,浓度为10umol/L的TaqManprobe0.5uL,ddH2O 4uL,DNA模板1uL;10. The method according to claim 9, characterized in that: in the steps (1) ① and (2), the parameters of amplification are as follows: the amplification reaction volume is 20uL, 2×Premix Ex Taq (Rox) 12.5 uL, Forwardprimer 1uL with a concentration of 10umol/L, Reverse primer with a concentration of 10umol/L 1uL, TaqManprobe with a concentration of 10umol/L0.5uL, ddH2O 4uL, DNA template 1uL; 扩增反应条件:95℃10min预变性;95℃15s,50℃30s,72℃30s,在72℃收集荧光信号,共计45个循环。Amplification reaction conditions: pre-denaturation at 95°C for 10 minutes; 15s at 95°C, 30s at 50°C, 30s at 72°C, and fluorescence signal collection at 72°C for a total of 45 cycles.
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CN105177172B (en) * 2015-10-30 2018-04-13 中国农业科学院生物技术研究所 11 event-specific detection methods of transgenic corns T4 and kit
CN105274229B (en) * 2015-10-30 2018-04-13 中国农业科学院生物技术研究所 Detect the method and kit of 11 foreign gene homozygosis of transgenic corns T4/heterozygous state
CN110551842A (en) * 2019-09-04 2019-12-10 中国农业科学院油料作物研究所 method for identifying MIR604 genotype of corn transformant based on insertion site genome sequence establishment
CN110551842B (en) * 2019-09-04 2022-10-11 中国农业科学院油料作物研究所 Method for identifying genotype of corn transformant MIR604 based on insertion site genome sequence establishment
CN112980930A (en) * 2021-04-30 2021-06-18 四川省农业科学院分析测试中心 Primer group for specific PCR (polymerase chain reaction) accurate quantitative detection of transgenic corn 2A-7 strain and detection method
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