CN102140451A - Method for extracting DNA (Desoxyribonucleic Acid) and RNA (Ribonucleic Acid) - Google Patents
Method for extracting DNA (Desoxyribonucleic Acid) and RNA (Ribonucleic Acid) Download PDFInfo
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Abstract
Description
技术领域technical field
本发明涉及生物技术,具体的说,涉及一种提取DNA和RNA的方法。The present invention relates to biotechnology, in particular to a method for extracting DNA and RNA.
背景技术Background technique
随着生物技术日新月异的发展,DNA和RNA的提取技术也日益成熟和发展,目前已有大量的技术广泛应用于实验室、工业生产、制药和动植物检疫领域,也产生了大量的相关专利,如“一种用于核酸分离的磁性纳米粒子复合物及其制法和应用(200610023144.4)”及“分离核酸的方法”(200680034578.2)等。With the rapid development of biotechnology, the extraction technology of DNA and RNA is becoming increasingly mature and developed. At present, a large number of technologies have been widely used in laboratories, industrial production, pharmaceuticals, animal and plant quarantine, and a large number of related patents have also been produced. Such as "a magnetic nanoparticle complex for nucleic acid separation and its preparation and application (200610023144.4)" and "method for isolating nucleic acid" (200680034578.2), etc.
DNA和RNA在细胞中总是与各种蛋白质结合在一起的。DNA和RNA的分离主要是指将DNA和RNA与蛋白质、多糖、脂肪等生物大分子物质分开。在分离DNA和RNA时应保证DNA和RNA分子一级结构的完整性,排除其他分子污染。但是由于由于DNA和RNA提取样品中含有碳水化合物、鞣酸、多酚及蛋白,甚至提取中使用的有机试剂如苯酚和氯仿,都会污染样品,因此如何取得高纯度的DNA和RNA,就成为所有研究者不得不面对的问题。DNA and RNA are always bound together with various proteins in cells. The separation of DNA and RNA mainly refers to the separation of DNA and RNA from biological macromolecules such as proteins, polysaccharides, and fats. When separating DNA and RNA, the integrity of the primary structure of DNA and RNA molecules should be ensured, and other molecular contamination should be excluded. However, because DNA and RNA extraction samples contain carbohydrates, tannic acid, polyphenols and proteins, and even organic reagents such as phenol and chloroform used in extraction will contaminate the samples, how to obtain high-purity DNA and RNA has become all problems that researchers have to face.
本发明的目的是提供一种提取DNA和RNA的方法。The object of the present invention is to provide a method for extracting DNA and RNA.
发明内容Contents of the invention
本发明的目的是提供一种从原核或真核生物来源材料中提取核酸,即DNA或RNA的方法。The object of the present invention is to provide a method for extracting nucleic acid, ie DNA or RNA, from prokaryotic or eukaryotic source material.
本发明利用的是核苷酸分子磷酸基团带负电荷的特性而开发的,使用饱和食盐水中的正电荷中和上述磷酸基团的负电荷,然后沉淀分离,最后经过纯化,得到DNA或RNA。The present invention is developed by utilizing the negatively charged characteristics of the phosphate groups of nucleotide molecules. The positive charges in saturated saline are used to neutralize the negative charges of the above phosphate groups, followed by precipitation and separation, and finally purified to obtain DNA or RNA .
具体的说,本发明所述的提取DNA或RNA的方法包括如下步骤:Specifically, the method for extracting DNA or RNA of the present invention comprises the following steps:
1)预处理:裂解原核或真核生物材料并用去污剂进行溶解处理,得到裂解消化产物;1) Pretreatment: lysing prokaryotic or eukaryotic biological materials and dissolving them with a detergent to obtain cleavage and digestion products;
2)将饱和食盐水加入到裂解消化产物中,对生物材料中的蛋白进行沉淀处理;2) adding saturated saline to the lysed digestion product, and precipitating the protein in the biological material;
3)分离沉淀相和液相,然后对液相中DNA或RNA进行分离和纯化。3) Separating the precipitation phase and the liquid phase, and then separating and purifying the DNA or RNA in the liquid phase.
其中,步骤2)所述的盐水为中性或酸性饱和盐水,若需要提取DNA,则使用中性饱和盐水;若需要提取RNA,则使用pH值5-6的酸性饱和盐水;Wherein, the brine described in step 2) is neutral or acidic saturated brine, if it is necessary to extract DNA, then use neutral saturated brine; if it is necessary to extract RNA, then use acidic saturated brine with a pH value of 5-6;
其中,所述饱和食盐水的体积用量为裂解消化产物体积的0.3-1倍;Wherein, the volume dosage of the saturated saline is 0.3-1 times of the volume of the cracked digestion product;
所述中性饱和盐水是将NaCl直接溶解在纯水中煮沸制备;所述酸性饱和盐水是向中性饱和盐水加入盐酸得到的,使pH值达到5-6。The neutral saturated brine is prepared by directly dissolving NaCl in pure water and boiling; the acid saturated brine is obtained by adding hydrochloric acid to the neutral saturated brine to make the pH value reach 5-6.
步骤2)如下进行:先在每毫升的裂解消化产物中加入350μl的中性饱和盐溶液;然后将上述溶液轻轻颠倒混匀,然后在室温下放置5-15min;Step 2) is carried out as follows: first add 350 μl of neutral saturated salt solution to each ml of the lysed digestion product; then gently invert the above solution to mix, and then place it at room temperature for 5-15 minutes;
步骤3)可按照本领域公知的技术进行,例如可如下进行:将上述溶液在室温2500rpm离心15-30min,得含有DNA或RNA的上清液,然后对于含有DNA上清液采用下述方法:Step 3) can be carried out according to techniques known in the art, for example, it can be carried out as follows: the above solution is centrifuged at room temperature 2500rpm for 15-30min to obtain a supernatant containing DNA or RNA, and then the following method is used for the supernatant containing DNA:
1.沉淀DNA1. Precipitate DNA
1.1转移含DNA的上清至新的Eppendorf管;1.1 Transfer the DNA-containing supernatant to a new Eppendorf tube;
1.2室温12000rpm离心10min,弃去上清;1.2 Centrifuge at 12000rpm for 10min at room temperature, discard the supernatant;
2.洗涤DNA2. Wash DNA
2.1DNA沉淀加入75%乙醇;2.1 Add 75% ethanol to DNA precipitation;
2.2室温10000rpm离心5min,弃去上清;2.2 Centrifuge at 10,000 rpm for 5 minutes at room temperature, discard the supernatant;
3.溶解DNA3. Dissolving DNA
3.1室温条件下干燥DNA沉淀5min,然后溶于超纯水中;3.1 Dry DNA precipitation at room temperature for 5 minutes, then dissolve in ultrapure water;
3.2对获得的DNA进行定量并分装保存于-80℃。3.2 Quantify the obtained DNA and store in -80°C.
4.去除RNA污染物4. Removal of RNA Contaminants
4.1每毫升的DNA溶液中加入50μg的RNase;4.1 Add 50 μg of RNase to each ml of DNA solution;
4.2 37℃温育1h。4.2 Incubate at 37°C for 1 hour.
注:去除RNA污染所使用的RNase处理法只能在提取的最后步骤中使用。如果需要脱盐得到高质量的DNA,RNase处理后可用本操作法之步骤3和4进行。若要长久保存DNA,可用Tris-EDTA(TE)溶液溶解DNA以抑制核酸酶活性。NOTE: The RNase treatment used to remove RNA contamination should only be used in the final step of the extraction. If desalting is required to obtain high-quality DNA,
对于含有RNA上清液采用下述方法:For RNA-containing supernatants use the following method:
1.RNA沉淀1. RNA precipitation
1.1转移含RNA的上清至新的Eppendorf管;1.1 Transfer the RNA-containing supernatant to a new Eppendorf tube;
1.2室温12000rpm离心10min,弃去上清;1.2 Centrifuge at 12000rpm for 10min at room temperature, discard the supernatant;
2.RNA洗涤2. RNA washing
2.1RNA沉淀加入75%乙醇;2.1 Add 75% ethanol to RNA precipitation;
2.2室温10000rpm离心5min,弃去上清;2.2 Centrifuge at 10,000 rpm for 5 minutes at room temperature, discard the supernatant;
3.RNA溶解3. RNA Dissolution
3.1室温条件下干燥RNA沉淀5min,然后溶于DEPC处理后的超纯水中;3.1 Dry the RNA pellet at room temperature for 5 minutes, and then dissolve it in DEPC-treated ultrapure water;
3.2对获得的RNA进行定量并分装保存于-80℃。3.2 Quantify the obtained RNA and store in -80°C.
4.去除基因组DNA污染物4. Removal of Genomic DNA Contaminants
此部分可用DNase I(无RNase)试剂盒进行操作,具体步骤参见制造商的说明书。This part can be operated with DNase I (RNase-free) kit, and the specific steps can be found in the manufacturer's instructions.
在步骤1)中,依据生物材料的来源和数量的不同,所述预处理可如下进行:In step 1), according to the source and quantity of biological material, the pretreatment can be carried out as follows:
1)对于较为大量的生物材料,采用液氮研磨法并随后用去污剂进行溶解处理;1) For a relatively large amount of biological material, liquid nitrogen grinding method and subsequent dissolution treatment with detergent are used;
2)对于单个动物细胞或细菌培养物,采用移液器吸头反复吹吸法并随后用去污剂进行溶解处理;2) For a single animal cell or bacterial culture, use a pipette tip to repeatedly blow and suck and then dissolve it with a detergent;
3)对于包括寄生虫卵,植物等的其他生物材料,可采用玻璃珠破裂法并随后用去污剂进行溶解处理。3) For other biological materials including parasite eggs, plants, etc., the glass bead disruption method followed by dissolution treatment with detergent can be used.
下面对预处理方法进行详细的描述:The following is a detailed description of the preprocessing method:
1)液氮研磨法提取DNA或RNA:1) Liquid nitrogen grinding method to extract DNA or RNA:
1.1取待测组织,切碎后置于研钵;1.1 Take the tissue to be tested, chop it and place it in a mortar;
1.2加入液氮以冰冻组织;1.2 Add liquid nitrogen to freeze the tissue;
1.3用研杵研磨组织;1.3 Grind the tissue with a pestle;
1.4每g待测组织加入3ml的裂解液;1.4 Add 3ml of lysate to each g of tissue to be tested;
1.5每g待测组织加入300μl的10% SDS;1.5 Add 300 μl of 10% SDS per g of tissue to be tested;
1.6将研磨物转移至Eppendorf管;1.6 Transfer the grind to an Eppendorf tube;
1.7加入蛋白酶K,在50℃进行消化1h;1.7 Add proteinase K and digest at 50°C for 1 hour;
2)移液器反复吹吸法提取DNA或RNA(以大肠杆菌的核酸提取为例)2) Pipette repeated blowing method to extract DNA or RNA (take the nucleic acid extraction of Escherichia coli as an example)
1.1将细菌培养物或细胞培养物转移到Eppendorf管中,2000rpm离心3-10min获得沉淀1.1 Transfer the bacterial culture or cell culture to an Eppendorf tube, centrifuge at 2000rpm for 3-10min to obtain the precipitate
1.2弃去上清,沉淀中加入裂解液并用移液器吸头吹吸8-10次以裂解菌体或细胞;1.2 Discard the supernatant, add the lysate to the pellet and inhale 8-10 times with a pipette tip to lyse the bacteria or cells;
1.3每毫升细菌培养物加入100μl 10% SDS;1.3 Add 100 μl 10% SDS to each milliliter of bacterial culture;
1.4每毫升裂解物加入100μg蛋白酶K,在50℃水浴中温育1h。1.4 Add 100 μg of proteinase K to each ml of lysate and incubate in a water bath at 50°C for 1 hour.
3)玻璃珠破碎法提取DNA或RNA3) Extraction of DNA or RNA by glass bead crushing method
1.1将生物材料与灭菌玻璃珠混合,震荡10min破碎;1.1 Mix the biological material with sterilized glass beads and shake for 10 minutes to break;
1.2每毫升加入300μl 10% SDS;1.2 Add 300μl 10% SDS per ml;
1.3每毫升裂解物加入300μg蛋白酶K,然后在50℃温育1h℃。1.3 Add 300 μg proteinase K to each ml of lysate, then incubate at 50°C for 1h°C.
其中,所述灭菌玻璃珠选择本领域常用的玻璃珠,优选0.4mm直径。所述震荡采用高速漩涡振荡器进行,其转速为5000rpm。Wherein, the sterilized glass beads are glass beads commonly used in the field, preferably with a diameter of 0.4 mm. The shaking is carried out by a high-speed vortex oscillator with a rotation speed of 5000 rpm.
本发明的核心在于用盐溶液的阳离子中和核酸所带的负电荷,被中和后的DNA或RNA则在高盐溶液中析出。通过低速离心的方法可以去掉细胞碎片、蛋白等大部分杂质,通过乙醇沉淀法则可以将DNA或RNA沉淀出来。与现有技术相比,本发明的优点在于:1)使用无毒试剂;2)提取方法简便快捷;3)成本低廉。The core of the invention is to neutralize the negative charge of nucleic acid with cations in salt solution, and the neutralized DNA or RNA is precipitated in high-salt solution. Most impurities such as cell debris and protein can be removed by low-speed centrifugation, and DNA or RNA can be precipitated by ethanol precipitation. Compared with the prior art, the present invention has the advantages of: 1) use of non-toxic reagents; 2) simple and quick extraction method; 3) low cost.
附图说明Description of drawings
图1.使用本发明的方法提取的早熟艾美耳球虫(Eimeria praecox)的基因组DNA(第一和第二泳道)。DNA分子量标记(M)为EcoT14酶切后的λ基因组。Figure 1. Genomic DNA (first and second lanes) of Eimeria praecox extracted using the method of the present invention. The DNA molecular weight marker (M) is the λ genome digested by EcoT14.
图2.使用本发明的方法提取的柔嫩艾美耳球虫(Eimeria tenella)的基因组DNA。DNA分子量标记为EcoT14酶切后的λ基因组。Figure 2. Genomic DNA of Eimeria tenella extracted using the method of the present invention. The DNA molecular weight marker is the λ genome digested with EcoT14.
图3.使用本发明的方法提取的早熟艾美耳球虫(Eimeria praecox)的总RNA。DNA分子量标记为Trans DNA Marker III。Figure 3. Total RNA of Eimeria praecox extracted using the method of the present invention. The DNA molecular weight marker is Trans DNA Marker III.
图4.使用本发明的方法提取的柔嫩艾美耳球虫(Eimeria tenella)豪顿株(Hougton Strain)的总RNA。DNA分子量标记为Trans DNA Marker III。Figure 4. Total RNA of Eimeria tenella (Eimeria tenella) Howden strain (Hougton Strain) extracted using the method of the present invention. The DNA molecular weight marker is Trans DNA Marker III.
图5使用本发明的方法提取的柔嫩艾美耳球虫(Eimeria tenella)豪顿株(Hougton Strain)及北京株(Beijing Strain)的基因组后成功扩增得到的MIC2基因。Fig. 5 is the MIC2 gene successfully amplified from the genomes of Eimeria tenella (Eimeria tenella) Howden strain (Hougton Strain) and Beijing strain (Beijing Strain) extracted by the method of the present invention.
图6.使用本发明的方法提取的BALB/c小鼠的基因组DNA。DNA分子量标记(M)为EcoT14酶切后的λ基因组。Figure 6. Genomic DNA of BALB/c mice extracted using the method of the present invention. The DNA molecular weight marker (M) is the λ genome digested by EcoT14.
图7使用本发明的方法提取的小鼠的基因组后成功扩增得到的16S核糖体DNA基因。FIG. 7 is the 16S ribosomal DNA gene obtained by successfully amplifying the mouse genome extracted using the method of the present invention.
图8.使用本发明的方法提取的大肠杆菌的基因组DNA。DNA分子量标记(M)为EcoT14酶切后的λ基因组。Figure 8. Genomic DNA of Escherichia coli extracted using the method of the present invention. The DNA molecular weight marker (M) is the λ genome digested by EcoT14.
图9使用本发明的方法提取的大肠杆菌的总RNA。DNA分子量标记为Trans DNA Marker III。Figure 9 shows the total RNA of Escherichia coli extracted using the method of the present invention. The DNA molecular weight marker is Trans DNA Marker III.
图10.使用本发明的方法提取的大肠杆菌的基因组后成功扩增得到的16S核糖体DNA基因。FIG. 10 . The 16S ribosomal DNA gene obtained after the genome of Escherichia coli extracted by the method of the present invention is successfully amplified.
具体实施方式Detailed ways
以下实施例用于说明本发明,但不用来限制本发明的范围。The following examples are used to illustrate the present invention, but are not intended to limit the scope of the present invention.
实施例1Example 1
利用玻璃珠破碎法提取艾美耳球虫卵囊样品的DNA或RNA,操作步骤如下:The DNA or RNA of the Eimeria oocyst sample was extracted by the glass bead crushing method, and the operation steps were as follows:
一、DNA提取操作方案1. DNA extraction operation scheme
1.细胞破碎:1. Cell disruption:
1.1 5×106个孢子化或未孢子化的卵囊沉淀与0.5g的灭菌玻璃珠(0.4mm直径)混合,装入15ml的尖底螺旋盖离心管中,用高速漩涡振荡器(5000rpm)震荡10min破碎卵囊;1.1 5×10 6 sporulated or unsporulated oocyst pellets were mixed with 0.5 g of sterilized glass beads (0.4 mm in diameter), put into a 15 ml centrifuge tube with a pointed bottom screw cap, and vortexed with a high-speed shaker (5000 rpm ) shake for 10 minutes to break up the oocysts;
1.2每毫升加入300μl 10%SDS;1.2 Add 300μl 10% SDS per ml;
1.3加入300μg蛋白酶K,然后在50℃温育1h。1.3 Add 300 μg proteinase K, and then incubate at 50°C for 1 hour.
2.相分离:2. Phase separation:
2.1上述裂解产物中加入1ml的中性饱和盐溶液NaCl;2.1 Add 1ml of neutral saturated salt solution NaCl to the above lysate;
2.2将离心管轻轻颠倒混匀15s,然后在室温下放置10min;2.2 Gently invert the centrifuge tube and mix for 15 seconds, then place it at room temperature for 10 minutes;
2.3室温下2500rpm离心15min;2.3 Centrifuge at 2500rpm for 15min at room temperature;
2.4DNA分子此时只存在于上清水相中(见下图)2.4 DNA molecules only exist in the supernatant aqueous phase at this time (see the figure below)
3.DNA沉淀3. DNA precipitation
3.1转移含DNA的上清至新的Eppendorf管;3.1 Transfer the DNA-containing supernatant to a new Eppendorf tube;
3.2室温12000rpm离心10min,弃去上清3.2 Centrifuge at 12000rpm for 10min at room temperature, discard the supernatant
1.3.DNA沉淀1.3. DNA precipitation
4.DNA洗涤4. DNA washing
4.1DNA沉淀加入75%乙醇;4.1 Add 75% ethanol to DNA precipitation;
4.2室温10000rpm离心5min,弃去上清;4.2 Centrifuge at 10,000 rpm for 5 minutes at room temperature, discard the supernatant;
5.DNA溶解5. DNA dissolution
5.1室温条件下干燥DNA沉淀5min,然后溶于超纯水中;5.1 Dry DNA precipitation at room temperature for 5 minutes, then dissolve in ultrapure water;
5.2对获得的DNA进行定量并分装保存于-80℃。5.2 Quantify the obtained DNA and store in -80°C.
6.去除RNA污染物6. Removal of RNA Contaminants
6.1每毫升的DNA溶液中加入50μg的RNase;6.1 Add 50 μg of RNase to each ml of DNA solution;
6.2 37℃温育1h。6.2 Incubate at 37°C for 1 hour.
注:去除RNA污染所使用的RNase处理法只能在提取的最后步骤中使用。如果需要脱盐得到高质量的DNA,RNase处理后可用本操作法之步骤3和4进行。若要长久保存DNA,可用Tris-EDTA(TE)溶液溶解DNA以抑制核酸酶活性。NOTE: The RNase treatment used to remove RNA contamination should only be used in the final step of the extraction. If desalting is required to obtain high-quality DNA, steps 3 and 4 of this method can be used after RNase treatment. To preserve DNA for a long time, Tris-EDTA (TE) solution can be used to dissolve DNA to inhibit nuclease activity.
二、RNA提取操作方案2. RNA extraction operation scheme
1.细胞裂解1. Cell Lysis
1.1 5×106个孢子化或未孢子化卵囊的沉淀与0.5g的灭菌玻璃珠(0.4mm直径)混合,装入15ml的尖底螺旋盖离心管中,用高速漩涡振荡器(5000rpm)震荡10min破碎卵囊;1.1 5×10 6 sporulated or unsporulated oocysts were mixed with 0.5 g of sterilized glass beads (0.4 mm in diameter), put into a 15 ml centrifuge tube with a pointed bottom screw cap, and vortexed with a high-speed shaker (5000 rpm) ) shake for 10 minutes to break up the oocysts;
1.2每毫升上述产物加入300μl 10%SDS并混匀,然后置于42℃温育1h。1.2 Add 300 μl 10% SDS to each ml of the above product and mix well, then incubate at 42°C for 1h.
2.相分离:2. Phase separation:
2.1上述裂解产物中加入1ml的pH为5.6的酸性饱和盐溶液NaCl;2.1
2.2将离心管轻轻颠倒混匀15s,然后在室温下放置10min;2.2 Gently invert the centrifuge tube and mix for 15 seconds, then place it at room temperature for 10 minutes;
2.3室温下2500rpm离心15min;2.3 Centrifuge at 2500rpm for 15min at room temperature;
2.4RNA分子此时只存在于上清水相中(见下图)2.4 RNA molecules only exist in the supernatant aqueous phase at this time (see the figure below)
3.RNA沉淀3. RNA precipitation
3.1转移含RNA的上清至新的Eppendorf管;3.1 Transfer the RNA-containing supernatant to a new Eppendorf tube;
3.2室温12000rpm离心10min,弃去上清;3.2 Centrifuge at 12000 rpm for 10 min at room temperature, discard the supernatant;
4.RNA洗涤4. RNA washing
4.1RNA沉淀加入75%乙醇;4.1 Add 75% ethanol to RNA precipitation;
4.2室温10000rpm离心5min,弃去上清;4.2 Centrifuge at 10,000 rpm for 5 minutes at room temperature, discard the supernatant;
5.RNA溶解5. RNA Dissolution
5.1室温条件下干燥RNA沉淀5min,然后溶于DEPC处理后的超纯水中;5.1 Dry the RNA pellet at room temperature for 5 minutes, and then dissolve it in DEPC-treated ultrapure water;
5.2对获得的RNA进行定量并分装保存于-80℃。5.2 Quantify the obtained RNA and store in -80°C.
6.然后按照说明书,利用DNase I(无RNase)去除基因组DNA污染物6. Then according to the instructions, use DNase I (RNase-free) to remove genomic DNA pollutants
三、DNA提取结果3. DNA extraction results
提取的DNAA26o/A28o比率为1.87,其质量完全符合后续分子生物学操作要求。DNA的产量取决于起始卵囊的数量,即6×106个孢子化卵囊可获得3.5985 mgDNA。图1和图2为提取的DNA的1.5%琼脂糖凝胶电泳图。The ratio of the extracted DNA A26o/A28o was 1.87, and its quality fully met the requirements of subsequent molecular biology operations. The yield of DNA depends on the number of initial oocysts, that is, 3.5985 mg DNA can be obtained from 6×10 6 sporulated oocysts. Figure 1 and Figure 2 are 1.5% agarose gel electrophoresis images of the extracted DNA.
四、RNA提取结果4. Results of RNA extraction
提取的RNAA26o/A28o比率为1.42,其质量完全符合后续分子生物学操作要求。DNA的产量取决于起始卵囊的数量,即6×106个孢子化卵囊可获得191.7μg RNA。图3和图4为提取的RNA的1.5%琼脂糖凝胶电泳图。The ratio of extracted RNA A26o/A28o was 1.42, and its quality fully met the requirements of subsequent molecular biology operations. The yield of DNA depends on the number of starting oocysts, that is, 191.7 μg RNA can be obtained from 6×10 6 sporulated oocysts. Figure 3 and Figure 4 are 1.5% agarose gel electrophoresis images of the extracted RNA.
五、提取的基因组DNA和RNA在下游操作的应用5. Application of extracted genomic DNA and RNA in downstream operations
可用特异的引物从提取的DNA或RNA中PCR扩增特定的靶基因,以验证提取的DNA或RNA的可应用性。本实例中应用MIC2-UP(tatggctcgagcgttgtcgctg)和MIC2-D(gtcaggatgactgttgagtgtc)从所提取的柔嫩艾美耳球虫基因组DNA中进行MIC2基因(GENBANK登录号FJ807654)的扩增。所使用的引物为北京奥科生物有限公司所合成。Specific primers can be used to PCR amplify specific target genes from the extracted DNA or RNA to verify the applicability of the extracted DNA or RNA. In this example, MIC2-UP (tatggctcgagcgttgtcgctg) and MIC2-D (gtcaggatgactgttgagtgtc) were used to amplify the MIC2 gene (GENBANK accession number FJ807654) from the extracted Eimeria tenella genomic DNA. The primers used were synthesized by Beijing Aoke Biological Co., Ltd.
图5为从柔嫩艾美耳球虫北京株和豪顿株的基因组DNA中扩增的MIC2基因。Fig. 5 shows the MIC2 gene amplified from the genomic DNA of Eimeria tenella Beijing strain and Howden strain.
实施例2Example 2
利用液氮研磨法提取小鼠细胞的DNA或RNA,操作步骤如下:Use the liquid nitrogen grinding method to extract DNA or RNA from mouse cells. The operation steps are as follows:
一液氮研磨法提取DNA的技术方案A technical solution for extracting DNA by liquid nitrogen grinding
1.研磨1. Grinding
1.1取1g组织,切碎后置于研钵;1.1 Take 1g of tissue, chop it and place it in a mortar;
1.2加入液氮以冰冻组织;1.2 Add liquid nitrogen to freeze the tissue;
1.3用研杵研磨组织;1.3 Grind the tissue with a pestle;
1.4加入3ml的裂解液;1.4 Add 3ml of lysate;
1.5加入300μl的10%SDS;1.5 Add 300 μl of 10% SDS;
1.6将研磨物转移至Eppendorf管;1.6 Transfer the grind to an Eppendorf tube;
1.7加入蛋白酶K进行消化(50℃℃1h)1.7 Add proteinase K for digestion (50℃℃1h)
2.抽提2. Extraction
2.1在每毫升的裂解消化产物中加入350μl的中性饱和盐溶液(NaCl)2.1 Add 350 μl neutral saturated salt solution (NaCl) to each ml of the lysed digestion product
2.2将上述溶液轻轻颠倒混匀15s,然后在室温下放置10min;2.2 Gently invert and mix the above solution for 15 seconds, then place it at room temperature for 10 minutes;
2.3室温2500rpm离心15min,上清水相中则含有DNA。2.3 Centrifuge at 2500 rpm for 15 minutes at room temperature, and the supernatant aqueous phase contains DNA.
3.DNA沉淀3. DNA precipitation
3.1转移含DNA的上清至新的Eppendorf管;3.1 Transfer the DNA-containing supernatant to a new Eppendorf tube;
3.2室温12000rpm离心10min,弃去上清;3.2 Centrifuge at 12000 rpm for 10 min at room temperature, discard the supernatant;
4.DNA洗涤4. DNA washing
4.1DNA沉淀加入75%乙醇;4.1 Add 75% ethanol to DNA precipitation;
4.2室温10000rpm离心5min,弃去上清;4.2 Centrifuge at 10,000 rpm for 5 minutes at room temperature, discard the supernatant;
5.DNA溶解5. DNA dissolution
5.1室温条件下干燥DNA沉淀5min,然后溶于超纯水中;5.1 Dry DNA precipitation at room temperature for 5 minutes, then dissolve in ultrapure water;
5.2对获得的DNA进行定量并分装保存于-80℃。5.2 Quantify the obtained DNA and store in -80°C.
6.去除RNA污染物6. Removal of RNA Contaminants
6.1每毫升的DNA溶液中加入50μg的RNase;6.1 Add 50 μg of RNase to each ml of DNA solution;
6.2 37℃温育1h。6.2 Incubate at 37°C for 1 hour.
注:去除RNA污染所使用的RNase处理法只能在提取的最后步骤中使用。如果需要脱盐得到高质量的DNA,RNase处理后可用本操作法之步骤3和4进行。若要长久保存DNA,可用Tris-EDTA(TE)溶液溶解DNA以抑制核酸酶活性。NOTE: The RNase treatment used to remove RNA contamination should only be used in the final step of the extraction. If desalting is required to obtain high-quality DNA, steps 3 and 4 of this method can be used after RNase treatment. To preserve DNA for a long time, Tris-EDTA (TE) solution can be used to dissolve DNA to inhibit nuclease activity.
二.液氮研磨法RNA提取的技术方案2. Technical scheme of RNA extraction by liquid nitrogen grinding method
1.研磨1. Grinding
1.1取1g组织,切碎后置于研钵;1.1 Take 1g of tissue, chop it and place it in a mortar;
1.2加入液氮以冰冻组织;1.2 Add liquid nitrogen to freeze the tissue;
1.3用研杵研磨组织;1.3 Grind the tissue with a pestle;
1.4加入3ml的裂解液;1.4 Add 3ml of lysate;
1.5加入300μl的10%SDS;1.5 Add 300 μl of 10% SDS;
1.6将研磨物转移至Eppendorf管;1.6 Transfer the grind to an Eppendorf tube;
1.7加入蛋白酶K进行消化(50℃1h)1.7 Add proteinase K for digestion (50°C 1h)
2.抽提2. Extraction
2.1在每毫升的裂解消化产物中加入350μl的pH为6的酸性饱和盐溶液(NaCl)2.1 Add 350 μl of acidic saturated salt solution (NaCl) at pH 6 to each ml of the lysed digest
2.2将上述溶液轻轻颠倒混匀15s,然后在室温下放置10min;2.2 Gently invert and mix the above solution for 15 seconds, then place it at room temperature for 10 minutes;
2.3室温2500rpm离心15min,上清水相中则含有RNA。2.3 Centrifuge at 2500 rpm for 15 minutes at room temperature, and the supernatant aqueous phase contains RNA.
3.RNA沉淀3. RNA precipitation
3.1转移含RNA的上清至新的Eppendorf管;3.1 Transfer the RNA-containing supernatant to a new Eppendorf tube;
3.2室温12000rpm离心10min,弃去上清;3.2 Centrifuge at 12000 rpm for 10 min at room temperature, discard the supernatant;
4.RNA洗涤4. RNA washing
4.1RNA沉淀加入75%乙醇;4.1 Add 75% ethanol to RNA precipitation;
4.2室温10000rpm离心5min,弃去上清;4.2 Centrifuge at 10,000 rpm for 5 minutes at room temperature, discard the supernatant;
5.RNA溶解5. RNA Dissolution
5.1室温条件下干燥RNA沉淀5min,然后溶于DEPC处理后的超纯水中;5.1 Dry the RNA pellet at room temperature for 5 minutes, and then dissolve it in DEPC-treated ultrapure water;
5.2对获得的RNA进行定量并分装保存于-80℃。5.2 Quantify the obtained RNA and store in -80°C.
6.去除基因组DNA污染物6. Removal of Genomic DNA Contaminants
此部分可用DNase I(无RNase)试剂盒进行操作,具体步骤参见制造商的说明书。This part can be operated with DNase I (RNase-free) kit, and the specific steps can be found in the manufacturer's instructions.
三、DNA提取效果3. DNA extraction effect
提取的DNAA26o/A28o比率为1.83,其质量完全符合后续分子生物学操作要求。DNA的产量取决于起始组织材料的量,即从10mg的组织可获得200μgDNA。图6为提取的DNA的1.5%琼脂糖凝胶电泳图。The ratio of A26o/A28o of the extracted DNA was 1.83, and its quality fully met the requirements of subsequent molecular biology operations. The yield of DNA depends on the amount of starting tissue material, ie 200 μg of DNA can be obtained from 10 mg of tissue. Fig. 6 is a 1.5% agarose gel electrophoresis image of the extracted DNA.
使用本发明提取的基因组DNA和RNA在下游操作的应用Use of the genomic DNA and RNA extracted by the present invention in downstream operations
可用特异的引物从提取的DNA或RNA中PCR扩增特定的靶基因,以验证提取的DNA或RNA的可应用性。本实例中应用正向GAPDH Primer(5’-CAAGGTCATCCATGACAACTTTG-3’和反向GAPDH Primer(5’-GTCCACCACCCTGTTGCTGTAG-3’)从所提取的小鼠基因组DNA中进行16S核糖体DNA的扩增。所使用的引物为北京奥科生物有限公司所合成。结果见图7。Specific primers can be used to PCR amplify specific target genes from the extracted DNA or RNA to verify the applicability of the extracted DNA or RNA. In this example, forward GAPDH Primer (5'-CAAGGTCATCCATGACAACTTTG-3' and reverse GAPDH Primer (5'-GTCCACCACCCCTGTTGCTGTAG-3') were used to amplify 16S ribosomal DNA from the extracted mouse genomic DNA. The used The primers were synthesized by Beijing Aoke Biological Co., Ltd. The results are shown in Figure 7.
实施例3Example 3
利用移液器吸头反复吹吸法提取大肠杆菌的DNA或RNA,操作步骤如下:Use the pipette tip to repeatedly blow and suck to extract the DNA or RNA of Escherichia coli. The operation steps are as follows:
一、DNA提取操作方案1. DNA extraction operation scheme
1匀浆1 homogenate
1.1将1ml的细菌培养物转移到Eppendorf管中2000rpm离心5min获得沉淀1.1 Transfer 1ml of the bacterial culture to an Eppendorf tube and centrifuge at 2000rpm for 5min to obtain a precipitate
1.2弃去上清,沉淀中加入1ml裂解液并反复用移液器吸头吹吸裂解菌体1.2 Discard the supernatant, add 1ml of lysate to the pellet, and blow and suck the lysed bacteria repeatedly with the pipette tip
1.3加入100μl 10% SDS;1.3 Add 100μl 10% SDS;
1.4加入100μg蛋白酶K,在50℃水浴中温育1h。1.4 Add 100 μg of proteinase K and incubate in a water bath at 50°C for 1 hour.
2.水相分离:2. Water phase separation:
2.1在每毫升的裂解消化产物中加入350μl的中性饱和盐溶液(NaCl);2.1 Add 350 μl neutral saturated salt solution (NaCl) to each ml of the lysed digestion product;
2.2将上述溶液轻轻颠倒混匀15s,然后在室温下放置10min;2.2 Gently invert and mix the above solution for 15 seconds, then place it at room temperature for 10 minutes;
2.3室温2500rpm离心15min,上清水相中则含有DNA。2.3 Centrifuge at 2500 rpm for 15 minutes at room temperature, and the supernatant aqueous phase contains DNA.
3.DNA沉淀3. DNA precipitation
3.1转移含DNA的上清至新的Eppendorf管;3.1 Transfer the DNA-containing supernatant to a new Eppendorf tube;
3.2室温12000rpm离心10min,弃去上清3.2 Centrifuge at 12000rpm for 10min at room temperature, discard the supernatant
1.3.DNA沉淀1.3. DNA precipitation
4.DNA洗涤4. DNA washing
4.1DNA沉淀加入75%乙醇;4.1 Add 75% ethanol to DNA precipitation;
4.2室温10000rpm离心5min,弃去上清;4.2 Centrifuge at 10,000 rpm for 5 minutes at room temperature, discard the supernatant;
5.DNA溶解5. DNA dissolution
5.1室温条件下干燥DNA沉淀5min,然后溶于超纯水中;5.1 Dry DNA precipitation at room temperature for 5 minutes, then dissolve in ultrapure water;
5.2对获得的DNA进行定量并分装保存于-80℃。5.2 Quantify the obtained DNA and store in -80°C.
6.去除RNA污染物6. Removal of RNA Contaminants
6.1每毫升的DNA溶液中加入50μg的RNase;6.1 Add 50 μg of RNase to each ml of DNA solution;
6.2 37℃温育1h。6.2 Incubate at 37°C for 1 hour.
注:去除RNA污染所使用的RNase处理法只能在提取的最后步骤中使用。如果需要脱盐得到高质量的DNA,RNase处理后可用本操作法之步骤3和4进行。若要长久保存DNA,可用Tris-EDTA(TE)溶液溶解DNA以抑制核酸酶活性。NOTE: The RNase treatment used to remove RNA contamination should only be used in the final step of the extraction. If desalting is required to obtain high-quality DNA, steps 3 and 4 of this method can be used after RNase treatment. To preserve DNA for a long time, Tris-EDTA (TE) solution can be used to dissolve DNA to inhibit nuclease activity.
二、RNA提取操作方案2. RNA extraction operation scheme
1.匀浆1. Homogenization
1.1将1ml的细菌培养物转移到Eppendorf管中2000rpm离心5min获得沉淀1.1 Transfer 1ml of the bacterial culture to an Eppendorf tube and centrifuge at 2000rpm for 5min to obtain a precipitate
1.2弃去上清,沉淀中加入1ml裂解液并反复用移液器吸头吹吸裂解菌体1.2 Discard the supernatant, add 1ml of lysate to the pellet, and blow and suck the lysed bacteria repeatedly with the pipette tip
1.3加入100μl的10%SDS;1.3 Add 100 μl of 10% SDS;
1.4加入100μg蛋白酶K,在50℃水浴中温育1h。1.4 Add 100 μg of proteinase K and incubate in a water bath at 50°C for 1 hour.
2.相分离2. Phase separation
2.1在每毫升的裂解消化产物中加入350μl pH为5的的酸性饱和盐溶液(NaCl)2.1 Add 350 μl of acidic saturated salt solution (NaCl) at pH 5 to each ml of the lysed digest
2.2将上述溶液轻轻颠倒混匀15s,然后在室温下放置10min;2.2 Gently invert and mix the above solution for 15 seconds, then place it at room temperature for 10 minutes;
2.3室温2500rpm离心15min,上清水相中则含有RNA。2.3 Centrifuge at 2500 rpm for 15 minutes at room temperature, and the supernatant aqueous phase contains RNA.
3.RNA沉淀3. RNA precipitation
3.1转移含RNA的上清至新的Eppendorf管;3.1 Transfer the RNA-containing supernatant to a new Eppendorf tube;
3.2室温12000rpm离心10min,弃去上清;3.2 Centrifuge at 12000 rpm for 10 min at room temperature, discard the supernatant;
4.RNA洗涤4. RNA washing
4.1RNA沉淀加入75%乙醇;4.1 Add 75% ethanol to RNA precipitation;
4.2室温10000rpm离心5min,弃去上清;4.2 Centrifuge at 10,000 rpm for 5 minutes at room temperature, discard the supernatant;
5.RNA溶解5. RNA Dissolution
5.1室温条件下干燥RNA沉淀5min,然后溶于DEPC处理后的超纯水中;5.1 Dry the RNA pellet at room temperature for 5 minutes, and then dissolve it in DEPC-treated ultrapure water;
5.2对获得的RNA进行定量并分装保存于-80℃。5.2 Quantify the obtained RNA and store in -80°C.
6.去除基因组DNA污染物6. Removal of Genomic DNA Contaminants
此部分可用DNase I(无RNase)试剂盒进行操作,具体步骤参见制造商的说明书。This part can be operated with DNase I (RNase-free) kit, and the specific steps can be found in the manufacturer's instructions.
三、DNA分离效果:3. DNA separation effect:
提取的DNAA26o/A28o比率为1.83,其质量完全符合后续分子生物学操作要求。DNA的产量取决于起始组织材料的量,即从1ml过夜培养的大肠杆菌中最终可以得到培养可获得48μgDNA。图8为提取的DNA的1.5%琼脂糖凝胶电泳图。The ratio of A26o/A28o of the extracted DNA was 1.83, and its quality fully met the requirements of subsequent molecular biology operations. The yield of DNA depends on the amount of starting tissue material, that is, 48 μg of DNA can be finally obtained from 1 ml of overnight cultured E. coli. Fig. 8 is a 1.5% agarose gel electrophoresis image of the extracted DNA.
四、RNA提取4. RNA Extraction
提取的RNAA26o/A28o比率为1.99,其质量完全符合后续分子生物学操作要求。RNA的产量取决于起始卵囊的数量,即1×106个大肠杆菌可获得22μgRNA。图9为提取的RNA的1.5%琼脂糖凝胶电泳图。The ratio of extracted RNA A26o/A28o was 1.99, and its quality fully met the requirements of subsequent molecular biology operations. The yield of RNA depends on the number of starting oocysts, that is, 22 μg RNA can be obtained from 1×10 6 E. coli. Fig. 9 is a 1.5% agarose gel electrophoresis image of extracted RNA.
五、使用本发明提取的基因组DNA和RNA在下游操作的应用5. Use the genomic DNA and RNA extracted by the present invention for downstream operations
可用特异的引物从提取的DNA或RNA中PCR扩增特定的靶基因,以验证提取的DNA或RNA的可应用性。本实例中应用针对大肠杆菌的多个16S核糖体DNA基因(基因登录号J01859/K02555/M24828/M24833/M24834/M24835/M24836/M24837/M24911/M24996))从所提取的大肠杆菌基因组DNA中进行16S核糖体DNA的扩增。所使用的引物为北京奥科生物有限公司所合成。结果见图10。Specific primers can be used to PCR amplify specific target genes from the extracted DNA or RNA to verify the applicability of the extracted DNA or RNA. In this example, multiple 16S ribosomal DNA genes (gene accession numbers J01859/K02555/M24828/M24833/M24834/M24835/M24836/M24837/M24911/M24996) against E. Amplification of 16S ribosomal DNA. The primers used were synthesized by Beijing Aoke Biological Co., Ltd. The results are shown in Figure 10.
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