CN101294199A - Coronary heart disease detection method and kit - Google Patents
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Abstract
本发明公开了一种检测动脉粥样硬化和/或冠心病易感性的方法,它包括检测个体的血管细胞间黏附分子1(VCAM1)、转录本和/或蛋白与正常相比是否存在变异,存在变异就表明该个体患动脉粥样硬化和/或冠心病的可能性大于正常人群。本发明还公开了相应的检测试剂盒。The invention discloses a method for detecting the susceptibility of atherosclerosis and/or coronary heart disease, which comprises detecting whether there is variation in individual vascular cell adhesion molecule 1 (VCAM1), transcript and/or protein compared with normal, The presence of a variant indicates that the individual is more likely to suffer from atherosclerosis and/or coronary heart disease than the normal population. The invention also discloses a corresponding detection kit.
Description
技术领域 technical field
本发明涉及分子生物学和医学领域。更具体地涉及血管细胞间黏附分子1(vascular cell adhesion molecule type-1,VCAM1)的单核苷酸多态性(singlenucleotide polymorphism,SNP)及其与动脉粥样硬化和/或冠心病的相关性。本发明还涉及检测这些SNP的方法和试剂盒。The present invention relates to the fields of molecular biology and medicine. More specifically concerning the single nucleotide polymorphism (SNP) of vascular cell adhesion molecule type-1 (VCAM1) and its association with atherosclerosis and/or coronary heart disease . The present invention also relates to methods and kits for detecting these SNPs.
背景技术 Background technique
动脉粥样硬化是一种常见的进行性动脉疾病,病变主要累及中等大小的肌层动脉,动脉内膜脂质沉积,平滑肌细胞增生,形成局限性斑块,可使动脉壁变硬,严重时斑块破裂导致血栓、栓塞、出血,受累管腔部分或完全闭塞,临床表现为动脉粥样硬化血管并发症的发生,老年患者中最常见和最严重的血管并发症是动脉粥样硬化和/或冠心病(不稳定性心绞痛和心肌梗塞)和脑卒中。Atherosclerosis is a common progressive arterial disease. The lesion mainly involves medium-sized muscular arteries. Lipid deposition in the arterial intima and proliferation of smooth muscle cells form localized plaques, which can harden the arterial wall. Plaque rupture leads to thrombus, embolism, hemorrhage, partial or complete occlusion of the involved lumen, and the clinical manifestation is the occurrence of atherosclerotic vascular complications. The most common and serious vascular complications in elderly patients are atherosclerosis and/or Or coronary heart disease (unstable angina and myocardial infarction) and stroke.
动脉粥样硬化病变的发生和发展主要经历了四个循序渐进的病理过程:The occurrence and development of atherosclerotic lesions mainly undergo four progressive pathological processes:
1.脂质浸润前期内膜改变:内皮损伤1. Intimal changes in the early stage of lipid infiltration: endothelial injury
2.脂质条纹:泡沫细胞、T淋巴细胞聚集,平滑肌细胞增生。2. Lipid streaks: accumulation of foam cells and T lymphocytes, hyperplasia of smooth muscle cells.
3.纤维斑块:平滑肌纤维化,形成纤维帽。3. Fibrous plaque: smooth muscle fibrosis, forming a fibrous cap.
4.复合病变:斑块钙化、破裂、溃疡,中膜病变。4. Compound lesions: plaque calcification, rupture, ulceration, and medial lesions.
动脉粥样硬化的病因及发病机制十分复杂,是动脉壁的细胞、细胞外基质、血液成分(特别是单核细胞、血小板和LDL)、局部血流动力学、环境及遗传因素之间一系列复杂作用的结果,因而病因并非是单一因素的。The etiology and pathogenesis of atherosclerosis are very complex. It is a series of interactions among arterial wall cells, extracellular matrix, blood components (especially monocytes, platelets and LDL), local hemodynamics, environment and genetic factors. The result of complex effects, so the etiology is not a single factor.
动脉粥样硬化作为多基因疾病,发病原因不仅涉及到多个作用不同的基因,而且还涉及到基因-基因、基因-环境的相互作用。现在关于动脉粥样硬化发病机理的学说有很多,如渗入脂质学说、血管内膜损伤学说、炎症反应学说、氧化-抗氧化学说及血栓形成学说。所有这些学说都涉及到不同的生物通路,但是现在还没有一种学说能够在遗传学和分子生物学上得到完整的解释。As a polygenic disease, atherosclerosis not only involves multiple genes with different roles, but also involves gene-gene and gene-environment interactions. Now there are many theories about the pathogenesis of atherosclerosis, such as the theory of infiltration of lipids, the theory of vascular intima injury, the theory of inflammatory response, the theory of oxidation-antioxidation and the theory of thrombosis. All these theories involve different biological pathways, but none of them can be fully explained in genetics and molecular biology.
多年来,基于对动脉粥样硬化致病危险因素的长期研究,科学家们针对这些危险因素开展了大量的工作。目前为止,已经发现了血管紧张素I转化酶(ACE)和MTHFR的某些插入、缺失和突变可能使动脉粥样硬化和/或冠心病致病的潜在危险因素。前者使血压调节中发挥重要功能的酶类之一,后者是一种与半胱氨酸代谢有关的酶。Over the years, based on the long-term research on the risk factors of atherosclerosis, scientists have carried out a lot of work on these risk factors. So far, certain insertions, deletions and mutations of angiotensin I converting enzyme (ACE) and MTHFR have been found to be potential risk factors for atherosclerosis and/or coronary heart disease. The former is one of the enzymes that play an important role in blood pressure regulation, and the latter is an enzyme related to cysteine metabolism.
另外,德国科学家最近证实,AT1受体的表达水平与血管受损过程紧密联系:ACE抑制剂会减少AT1受体的激活,从而改善血管功能不良、有效的抑制动脉粥样硬化的发生和发展。In addition, German scientists have recently confirmed that the expression level of AT1 receptors is closely related to the process of vascular damage: ACE inhibitors will reduce the activation of AT1 receptors, thereby improving poor vascular function and effectively inhibiting the occurrence and development of atherosclerosis.
长期以来,国内外研究较多地集中于脂质代谢通路中相关基因的突变及表达,如:副氧酶、脂蛋白脂肪酶、肝脂肪酶等。在对内源性一氧化氮合成酶(eNOS)的研究中,现在已有一些研究工作表明eNOS与动脉粥样硬化的紧密关联。另有美国科学家提出了炎症机制在动脉粥样硬化的形成中的作用,并在小鼠试验中得到了一定的证实。For a long time, research at home and abroad has focused more on the mutation and expression of related genes in lipid metabolism pathways, such as: paraoxygenase, lipoprotein lipase, liver lipase, etc. In the study of endogenous nitric oxide synthase (eNOS), some research work has shown that eNOS is closely related to atherosclerosis. Another American scientist proposed the role of inflammatory mechanism in the formation of atherosclerosis, which was confirmed in mouse experiments.
近年来,单核苷酸多态性(SNP)和单倍型(haplotype)概念在多基因疾病研究中的广泛运用,为在分子水平上研究动脉粥样硬化的发生和发展的机制开辟了全新的思路。同时,高通量、低成本的SNP检测手段的不断出现也为SNP大规模快速分型提供了可能。In recent years, the concept of single nucleotide polymorphism (SNP) and haplotype (haplotype) has been widely used in the study of polygenic diseases, which has opened up a new era for the study of the mechanism of the occurrence and development of atherosclerosis at the molecular level. train of thought. At the same time, the continuous emergence of high-throughput and low-cost SNP detection methods also provides the possibility for large-scale and rapid SNP typing.
日本科学家利用大规模的病例-对照研究对9万多个相关基因SNPs进行了关联分析,发现了一个50KB的单倍型区域与心肌梗死密切相关,其中包括LTA(lymphotoxin-α),NFKBIL1和BAT1等的多个SNP位点。Japanese scientists used a large-scale case-control study to conduct association analysis on more than 90,000 related gene SNPs, and found a 50KB haplotype region that is closely related to myocardial infarction, including LTA (lymphotoxin-α), NFKBIL1 and BAT1 and so on for multiple SNP sites.
在另一研究中,虽然P-选择素(P-selectin)中S290N和N562D各自与心肌梗塞都没有独立相关性,但它们构成的单倍型却与心肌梗塞显著相关。In another study, although S290N and N562D in P-selectin (P-selectin) were not independently associated with myocardial infarction, their haplotypes were significantly associated with myocardial infarction.
此外,SNP的存在与否以及等位基因频率存在人种及地域的差异,这就提示多基因疾病遗传异质性的存在,即同一疾病或性状在不同的人群中可能是不同的遗传因素造成的。在对凝血因子V基因的研究中,中国人群中未能发现国外报道的与白人女性心肌梗塞发病具有相关性的VLeiden突变,却发现了一个新的SNP-G/A1628(Arg485Lys)突变与APCR及动脉粥样硬化和/或冠心病相关,凝血因子V基因可能是中国人群动脉粥样硬化的一个易感基因。In addition, there are racial and geographical differences in the presence or absence of SNPs and allele frequencies, which suggests the existence of genetic heterogeneity in polygenic diseases, that is, the same disease or trait may be caused by different genetic factors in different populations of. In the study of the blood coagulation factor V gene, the VLeiden mutation reported abroad that was associated with the incidence of myocardial infarction in white women was not found in the Chinese population, but a new SNP-G/A1628 (Arg485Lys) mutation was found that was associated with APCR and Atherosclerosis and/or coronary heart disease are related, and the coagulation factor V gene may be a susceptibility gene for atherosclerosis in the Chinese population.
另外,不同人群中SNP及其单倍型的类型和频率存在的这种差异可能与不同人群对药物及环境因素的反应性不同密切相关。In addition, the differences in the types and frequencies of SNPs and their haplotypes in different populations may be closely related to the different responses of different populations to drugs and environmental factors.
在过去的50多年来,大规模的流行病学调查和遗传研究已经对冠状动脉粥样硬化这一复杂疾病做了一系列的研究,发现了一些易感基因与动脉粥样硬化相关,例如ABCA1、CYBA、ApoE、LDLR等。更多的与动脉粥样硬化相关继续在发现和验证中。In the past 50 years, large-scale epidemiological surveys and genetic studies have done a series of studies on coronary atherosclerosis, a complex disease, and found that some susceptibility genes are related to atherosclerosis, such as ABCA1 , CYBA, ApoE, LDLR, etc. More atherosclerosis-related ones continue to be discovered and validated.
动脉粥样硬化和/或冠心病作为一种由遗传因素和环境因素相互作用而发病的多基因病,寻找其相关基因进而阐明动脉粥样硬化和/或冠心病发病的遗传机制已经成为目前研究的热点。Atherosclerosis and/or coronary heart disease is a polygenic disease caused by the interaction of genetic factors and environmental factors. It has become a current study to find the related genes and then clarify the genetic mechanism of atherosclerosis and/or coronary heart disease. hotspots.
虽然已有许多关于各种基因多态性与动脉粥样硬化和/或冠心病的研究,但没有证实VCAM1基因与动脉粥样硬化和/或冠心病相关性的报道,更没有证实VCAM1基因的SNP与动脉粥样硬化和/或冠心病相关性的报道。Although there have been many studies on the relationship between various gene polymorphisms and atherosclerosis and/or coronary heart disease, there is no report on the correlation between VCAM1 gene and atherosclerosis and/or coronary heart disease, let alone the confirmation of VCAM1 gene. Reports of association of SNPs with atherosclerosis and/or coronary heart disease.
综上所述,为了尽早诊断动脉粥样硬化和/或冠心病,本领域迫切需要寻找动脉粥样硬化和/或冠心病易感基因,并开发检测动脉粥样硬化和/或冠心病的方法和试剂盒。In summary, in order to diagnose atherosclerosis and/or coronary heart disease as early as possible, there is an urgent need in the field to find susceptibility genes for atherosclerosis and/or coronary heart disease, and to develop methods for detecting atherosclerosis and/or coronary heart disease and kits.
发明内容 Contents of the invention
本发明的目的就是提供一种辅助诊断(尤其是早期诊断)动脉粥样硬化和/或冠心病的方法及检测试剂盒。The object of the present invention is to provide a method and detection kit for auxiliary diagnosis (especially early diagnosis) of atherosclerosis and/or coronary heart disease.
本发明的另一目的是提供一种新的治疗动脉粥样硬化和/或冠心病的方法。Another object of the present invention is to provide a new method for treating atherosclerosis and/or coronary heart disease.
在本发明的第一方面,提供了一种对个体的动脉粥样硬化和/或冠心病易感性进行诊断的方法,它包括步骤:In a first aspect of the present invention, a method of diagnosing susceptibility to atherosclerosis and/or coronary heart disease in an individual is provided, comprising the steps of:
检测该个体的VCAM1基因、转录本和/或蛋白,并与正常的VCAM1基因、转录本和/或蛋白相比较,Detecting the individual's VCAM1 gene, transcript and/or protein, and comparing it with normal VCAM1 gene, transcript and/or protein,
存在差异就表明该个体患动脉粥样硬化和/或冠心病的可能性高于正常人群。A difference indicates that the individual is more likely to suffer from atherosclerosis and/or coronary heart disease than the normal population.
在另一优选例中,所述的方法中检测的是VCAM1的基因或转录本,并与正常VCAM1核苷酸序列比较差异。In another preferred example, the method detects the gene or transcript of VCAM1, and compares the difference with the normal VCAM1 nucleotide sequence.
在另一优选例中,所述的差异是以下的单核苷酸多态性:In another preferred example, the difference is the following single nucleotide polymorphism:
256位C→T;256-bit C→T;
其中,核苷酸位置编号基于SEQ ID NO:1。Wherein, the nucleotide position numbers are based on SEQ ID NO:1.
在本发明的第二方面,提供了一种检测样品是否存在血管细胞间黏附分子1(VCAM1)的单核苷酸多态性的方法,包括步骤:In a second aspect of the present invention, there is provided a method for detecting whether a single nucleotide polymorphism of vascular cell adhesion molecule 1 (VCAM1) exists in a sample, comprising the steps of:
(a)用VCAM1基因特异性引物扩增样品的VCAM1基因,得到扩增产物;和(a) amplifying the VCAM1 gene of the sample with VCAM1 gene-specific primers to obtain an amplification product; and
(b)检测扩增产物中是否存在以下单核苷酸多态性:(b) Detect whether the following single nucleotide polymorphisms exist in the amplification product:
256位C→T;256-bit C→T;
其中,核苷酸位置编号基于SEQ ID NO:1。Wherein, the nucleotide position numbers are based on SEQ ID NO:1.
在另一优选例中,所述的基因特异性引物具有SEQ ID NO:2和3的序列。In another preferred example, the gene-specific primers have the sequences of SEQ ID NO: 2 and 3.
在另一优选例中,所述的扩增产物的长度为100-2000bp,且含有SEQ IDNO:1中第256位。In another preferred example, the length of the amplified product is 100-2000bp, and contains the 256th position in SEQ ID NO:1.
在本发明的第三方面,提供了一种检测动脉粥样硬化和/或冠心病的试剂盒,它包括特异性扩增VCAM1基因或转录本的引物,更佳地,所述的引物扩增出长度为100-2000bp,且含有SEQ ID NO:1中第256位的扩增产物。In a third aspect of the present invention, a test kit for detecting atherosclerosis and/or coronary heart disease is provided, which includes primers for specifically amplifying the VCAM1 gene or transcripts, more preferably, the primers amplify The length is 100-2000bp, and contains the amplification product at position 256 in SEQ ID NO:1.
在另一优选例中,所述试剂盒还含有选自下组的试剂:In another preferred embodiment, the kit also contains reagents selected from the following group:
(a)与SEQ ID NO:1中第256位的突变结合的探针;(a) a probe that binds to the mutation at position 256 in SEQ ID NO: 1;
(b)识别SEQ ID NO:1中第256位的突变限制性内切酶。(b) Recognizing the mutant restriction enzyme at position 256 in SEQ ID NO:1.
在另一优选例中,所述的突变选自以下单核苷酸多态性:In another preferred example, the mutation is selected from the following single nucleotide polymorphisms:
256位C→T;256-bit C→T;
其中,核苷酸位置编号基于SEQ ID NO:1。Wherein, the nucleotide position numbers are based on SEQ ID NO:1.
具体实施方式 Detailed ways
本发明人经过深入而广泛的研究,对大量候选基因的SNP进行了测定和分析。首次发现和证明了VCAM1的基因组序列与动脉粥样硬化和/或冠心病密切相关,其中关联研究结果显示,在VCAM1的SEQ ID NO:1中第256位的SNP(256位C→T)(记为RS3176867)在病例和对照组中的分布存在显著性差异(P<0.05),因此可作为辅助性检测动脉粥样硬化和/或冠心病(或其易感性)的特异性SNP。在此基础上完成了本发明。After intensive and extensive research, the inventors have determined and analyzed the SNPs of a large number of candidate genes. For the first time, it was discovered and proved that the genome sequence of VCAM1 is closely related to atherosclerosis and/or coronary heart disease. The results of the association study showed that the SNP at position 256 in SEQ ID NO: 1 of VCAM1 (position 256 C→T)( Denoted as RS3176867) there is a significant difference in distribution between cases and controls (P<0.05), so it can be used as a specific SNP for auxiliary detection of atherosclerosis and/or coronary heart disease (or its susceptibility). The present invention has been accomplished on this basis.
VCAM1基因VCAM1 gene
血管细胞间黏附分子1(vascular cell adhesion molecule type-1,VCAM1)的序列是已知,其详细序列和一些相关信息可参见网址http://www.ncbi.nlm.nih.gov/Genebank/;或http: //www.ncbi.nlm.nih.gov /SNP。为了方便起见,在SEQ ID NO:1给出VCAM1中与本发明SNP相关的核苷酸序列。The sequence of vascular cell adhesion molecule type-1 (VCAM1) is known, and its detailed sequence and some related information can be found at http://www.ncbi.nlm.nih.gov/Genebank/; or http://www.ncbi.nlm.nih.gov/SNP. For convenience, the nucleotide sequence relevant to the SNP of the present invention in VCAM1 is given in SEQ ID NO: 1.
VCAM1基因是一种血管上皮细胞支撑蛋白,并且在信号的传导中起一定作用。该基因被认为在动脉硬化发生的早期,起着重要的作用。VCAM1基因的LOH丢失,是诱发血管硬化的原因之一(Arvanitis DA et al.J Cell Mol Med.2005;9(1):153-9)。The VCAM1 gene is a support protein of vascular epithelial cells and plays a role in signal transduction. This gene is considered to play an important role in the early stage of atherosclerosis. The loss of LOH of VCAM1 gene is one of the reasons for inducing vascular sclerosis (Arvanitis DA et al. J Cell Mol Med. 2005; 9(1): 153-9).
本发明人对VCAM1基因中的几乎整个区域进行了测序,发现了许多SNP,其中大部分SNP与动脉粥样硬化和/或冠心病易感性并不相关,然而关联研究表明SEQID NO:1中256位C→T却是与动脉粥样硬化和/或冠心病易感性关联性非常高的SNP。The inventors sequenced almost the entire region of the VCAM1 gene and found many SNPs, most of which were not associated with atherosclerosis and/or coronary heart disease susceptibility, but association studies showed that 256 in SEQID NO:1 However, the position C→T is a SNP highly correlated with susceptibility to atherosclerosis and/or coronary heart disease.
具体而言,本发明揭示了VCAM1基因第4号内含子的单核苷酸多态性(SNP)以及该多态性与冠状动脉粥样硬化的相关性。本发明的SNP是SEQ ID NO:1所示序列的第256位的C/T多态,它位于人VCAM1基因的第4号内含子,纯合子TT在冠状动脉粥样硬化病人群中的频率,要显著高于在正常对照人群中的频率。Specifically, the present invention discloses the single nucleotide polymorphism (SNP) of No. 4 intron of VCAM1 gene and the correlation between the polymorphism and coronary atherosclerosis. The SNP of the present invention is the C/T polymorphism of the 256th position of the sequence shown in SEQ ID NO: 1, which is located in the No. 4 intron of the human VCAM1 gene, and the homozygous TT in the coronary atherosclerosis patient population The frequency was significantly higher than that in the normal control population.
基于本发明的新发现,VCAM1蛋白或多肽有多方面的新用途。这些用途包括(但不限于):用于辅助性诊断动脉粥样硬化和/或冠心病,或用于筛选促进VCAM1蛋白功能的物质,如抗体、多肽或其它配体。Based on the new discovery of the present invention, the VCAM1 protein or polypeptide has many new uses. These uses include (but are not limited to): for auxiliary diagnosis of atherosclerosis and/or coronary heart disease, or for screening substances that promote the function of VCAM1 protein, such as antibodies, polypeptides or other ligands.
另一方面,本发明还包括对人VCAM1 DNA或是其片段编码的多肽具有特异性的多克隆抗体和单克隆抗体,尤其是单克隆抗体。这里,“特异性”是指抗体能结合于人VCAM1基因产物或片段。较佳地,指那些能与人VCAM1基因产物或片段结合但不识别和结合于其它非相关抗原分子的抗体。本发明中抗体包括那些能够结合并抑制人VCAM1蛋白的分子,也包括那些并不影响人VCAM1蛋白功能的抗体。On the other hand, the present invention also includes polyclonal antibodies and monoclonal antibodies specific to human VCAM1 DNA or polypeptides encoded by its fragments, especially monoclonal antibodies. Here, "specificity" means that the antibody can bind to human VCAM1 gene product or fragment. Preferably, it refers to those antibodies that can bind to human VCAM1 gene products or fragments but do not recognize and bind to other irrelevant antigen molecules. Antibodies in the present invention include those molecules capable of binding and inhibiting human VCAM1 protein, as well as those antibodies that do not affect the function of human VCAM1 protein.
本发明不仅包括完整的单克隆或多克隆抗体,而且还包括具有免疫活性的抗体片段,如Fab′或(Fab)2片段;抗体重链;抗体轻链;遗传工程改造的单链Fv分子;或嵌合抗体。The present invention includes not only complete monoclonal or polyclonal antibodies, but also immunologically active antibody fragments, such as Fab' or (Fab) 2 fragments; antibody heavy chains; antibody light chains; genetically engineered single-chain Fv molecules; or chimeric antibodies.
本发明的抗体可以通过本领域内技术人员已知的各种技术进行制备。例如,纯化的人VCAM1基因产物或者其具有抗原性的片段,可被施用于动物以诱导多克隆抗体的产生。与之相似的,表达人VCAM1蛋白或其具有抗原性的片段的细胞可用来免疫动物来生产抗体。多种佐剂可用于增强免疫反应,包括但不限于弗氏佐剂等。Antibodies of the present invention can be prepared by various techniques known to those skilled in the art. For example, purified human VCAM1 gene product, or antigenic fragments thereof, can be administered to animals to induce polyclonal antibody production. Similarly, cells expressing human VCAM1 protein or antigenic fragments thereof can be used to immunize animals to produce antibodies. Various adjuvants can be used to enhance the immune response, including but not limited to Freund's adjuvant and the like.
本发明的抗体也可以是单克隆抗体。此类单克隆抗体可以利用杂交瘤技术来制备。本发明的抗体包括能阻断人VCAM1蛋白功能的抗体以及不影响人VCAM1蛋白功能的抗体。本发明的各类抗体可以利用人VCAM1基因产物的片段或功能区,通过常规免疫技术获得。这些片段或功能区可以利用重组方法制备或利用多肽合成仪合成。与人VCAM1基因产物的未修饰形式结合的抗体可以用原核细胞(例如E.Coli)中生产的基因产物来免疫动物而产生;与翻译后修饰形式结合的抗体(如糖基化或磷酸化的蛋白或多肽),可以用真核细胞(例如酵母或昆虫细胞)中产生的基因产物来免疫动物而获得。Antibodies of the invention may also be monoclonal antibodies. Such monoclonal antibodies can be prepared using hybridoma technology. The antibody of the present invention includes the antibody capable of blocking the function of human VCAM1 protein and the antibody not affecting the function of human VCAM1 protein. All kinds of antibodies of the present invention can be obtained by conventional immunization techniques by utilizing fragments or functional regions of human VCAM1 gene products. These fragments or functional regions can be prepared using recombinant methods or synthesized using a polypeptide synthesizer. Antibodies that bind to unmodified forms of the human VCAM1 gene product can be produced by immunizing animals with gene products produced in prokaryotic cells (e.g., E. coli); antibodies that bind to post-translationally modified forms (such as glycosylated or phosphorylated Proteins or polypeptides), which can be obtained by immunizing animals with gene products produced in eukaryotic cells (such as yeast or insect cells).
抗人VCAM1蛋白的抗体可用于免疫组织化学技术中,检测活检标本中的人VCAM1蛋白的多少和/或突变与否。一种优选的抗VCAM1抗体是不识别正常VCAM1但识别突变VCAM1的抗体,或者识别正常VCAM1但不识别突变VCAM1的抗体。利用这些抗体,可以方便地进行蛋白质水平的动脉粥样硬化和/或冠心病易感性检测。The antibody against human VCAM1 protein can be used in immunohistochemical techniques to detect the amount and/or mutation of human VCAM1 protein in biopsy specimens. A preferred anti-VCAM1 antibody is an antibody that does not recognize normal VCAM1 but recognizes mutant VCAM1, or an antibody that recognizes normal VCAM1 but not mutant VCAM1. Using these antibodies, the detection of atherosclerosis and/or coronary heart disease susceptibility at the protein level can be conveniently performed.
利用本发明VCAM1蛋白,通过各种常规筛选方法,可筛选出与VCAM1蛋白发生相互作用的物质,如抑制剂、激动剂或拮抗剂等。Using the VCAM1 protein of the present invention, substances that interact with the VCAM1 protein, such as inhibitors, agonists or antagonists, can be screened out through various conventional screening methods.
本发明还涉及定量和定位检测人VCAM1蛋白水平的诊断试验方法。这些试验是本领域所熟知的,且包括ELISA等。The invention also relates to a diagnostic test method for quantitatively and locally detecting human VCAM1 protein level. These assays are well known in the art and include ELISA and the like.
一种检测检测样品中是否存在VCAM1蛋白的方法是利用VCAM1蛋白的特异性抗体进行检测,它包括:将样品与VCAM1蛋白特异性抗体接触;观察是否形成抗体复合物,形成了抗体复合物就表示样品中存在VCAM1蛋白。A method for detecting whether there is VCAM1 protein in a sample is to use a specific antibody for VCAM1 protein to detect, which includes: contacting the sample with a specific antibody for VCAM1 protein; observing whether an antibody complex is formed, which means that the antibody complex is formed VCAM1 protein is present in the sample.
VCAM1蛋白的多聚核苷酸可用于VCAM1蛋白相关疾病的辅助诊断。在诊断方面,VCAM1蛋白的多聚核苷酸可用于检测VCAM1蛋白的表达与否或在疾病状态下VCAM1蛋白的异常表达。如VCAM1 DNA序列可用于对活检标本的杂交以判断VCAM1蛋白的表达异常。杂交技术包括Southern印迹法,Northern印迹法、原位杂交等。这些技术方法都是公开的成熟技术,相关的试剂盒都可从商业途径得到。本发明的多核苷酸的一部分或全部可作为探针固定在微阵列(microarray)或DNA芯片(又称为“基因芯片”)上,用于分析组织中基因的差异表达分析和基因诊断。用VCAM1蛋白特异的引物进行RNA-聚合酶链反应(RT-PCR)体外扩增也可检测VCAM1蛋白的转录产物。The polynucleotide of VCAM1 protein can be used for auxiliary diagnosis of VCAM1 protein-related diseases. In terms of diagnosis, the polynucleotide of VCAM1 protein can be used to detect the expression of VCAM1 protein or the abnormal expression of VCAM1 protein in a disease state. For example, VCAM1 DNA sequence can be used for hybridization of biopsy specimens to determine the abnormal expression of VCAM1 protein. Hybridization techniques include Southern blotting, Northern blotting, in situ hybridization, and the like. These technical methods are all open and mature technologies, and relevant kits are available from commercial sources. Part or all of the polynucleotides of the present invention can be immobilized as probes on microarrays or DNA chips (also known as "gene chips") for analysis of differential expression of genes in tissues and gene diagnosis. RNA-polymerase chain reaction (RT-PCR) in vitro amplification with VCAM1 protein-specific primers can also detect the transcripts of VCAM1 protein.
检测可以针对cDNA,也可针对基因组DNA。VCAM1蛋白突变的形式包括与正常野生型VCAM1 DNA序列相比的点突变、易位、缺失、重组和其它任何异常等。可用已有的技术如Southern印迹法、DNA序列分析、PCR和原位杂交检测突变。另外,突变有可能影响蛋白的表达,因此用Northern印迹法、Western印迹法可间接判断基因有无突变。Detection can be against cDNA or genomic DNA. The forms of VCAM1 protein mutations include point mutations, translocations, deletions, recombinations, and any other abnormalities compared with the normal wild-type VCAM1 DNA sequence. Mutations can be detected using established techniques such as Southern blotting, DNA sequence analysis, PCR and in situ hybridization. In addition, mutations may affect protein expression, so Northern blotting and Western blotting can be used to indirectly determine whether a gene has a mutation.
最方便的检测本发明SNP的方法,是通过用VCAM1基因特异性引物扩增样品的VCAM1基因,得到扩增产物;然后检测扩增产物中是否存在以下单核苷酸多态性:256位C→T,其中,核苷酸位置编号基于SEQ ID NO:1。The most convenient method for detecting the SNP of the present invention is to amplify the VCAM1 gene of the sample with VCAM1 gene-specific primers to obtain the amplified product; then detect whether the following single nucleotide polymorphism exists in the amplified product: 256 C → T, wherein the nucleotide position numbering is based on SEQ ID NO:1.
应理解,在本发明首次揭示了VCAM1基因的SNP与动脉粥样硬化和/或冠心病的相关性之后,本领域技术人员可以方便地设计出可特异性扩增出含该SNP位置的扩增产物,然后通过测序等方法确定是否存在256位C→T。通常,引物的长度为15-50bp,较佳地为20-30bp。虽然引物与模板序列完全互补是优选的,但是本领域技术人员知道,在引物与模板存在一定的不互补(尤其是引物的5′端)的情况下,也能够特异性地扩增(即仅扩增出所需的片段)。含有这些引物的试剂盒和使用这些引物的方法都在本发明范围之内,只要该引物扩增出的扩增产物含有本发明SNP的对应位置。一种优选的引物对具有SEQ ID NO:2和3的序列。It should be understood that after the present invention reveals for the first time the correlation between the SNP of the VCAM1 gene and atherosclerosis and/or coronary heart disease, those skilled in the art can easily design an amplification method that can specifically amplify the position of the SNP. The product, and then determine whether there is 256 C→T by sequencing and other methods. Usually, the length of the primer is 15-50bp, preferably 20-30bp. Although it is preferred that the primer is completely complementary to the template sequence, those skilled in the art know that it can also be specifically amplified (that is, only amplify the desired fragment). Kits containing these primers and methods using these primers are within the scope of the present invention, as long as the amplified product amplified by the primers contains the corresponding position of the SNP of the present invention. A preferred primer pair has the sequences of SEQ ID NO: 2 and 3.
虽然扩增产物的长度没有特别限制,但是通常扩增产物的长度为100-2000bp,较佳地为150-1500bp,更佳地为200-1000bp。这些扩增产物都应含有SEQ ID NO:1中第256位。Although the length of the amplified product is not particularly limited, generally the length of the amplified product is 100-2000 bp, preferably 150-1500 bp, more preferably 200-1000 bp. These amplified products should all contain the 256th position in SEQ ID NO:1.
由于本发明的SNP与动脉粥样硬化和/或冠心病具有非常高的关联性,因此不仅可用于早期辅助性诊断动脉粥样硬化和/或冠心病,而且可以未雨绸缪地使一些携带者在未发病前就采取合理的预防措施(如在饮食上采取相应控制),从而提高携带者的生存期和生存质量,因此具有极其重大的应用价值和社会效益。Because the SNP of the present invention has a very high correlation with atherosclerosis and/or coronary heart disease, it can not only be used for early auxiliary diagnosis of atherosclerosis and/or coronary heart disease, but also can prevent some carriers in the future Take reasonable preventive measures (such as taking corresponding control in diet) before the onset of the disease, so as to improve the survival period and quality of life of the carrier, so it has extremely important application value and social benefits.
下面结合具体实施例,进一步阐述本发明。应理解,这些实施例仅用于说明本发明而不用于限制本发明的范围。下列实施例中未注明具体条件的实验方法,通常按照常规条件如Sambrook等人,分子克隆:实验室手册(New York:ColdSpring Harbor Laboratory Press,1989)中所述的条件,或按照制造厂商所建议的条件。Below in conjunction with specific embodiment, further illustrate the present invention. It should be understood that these examples are only used to illustrate the present invention and are not intended to limit the scope of the present invention. The experimental method that does not indicate specific conditions in the following examples, usually according to conventional conditions such as Sambrook et al., molecular cloning: the conditions described in the laboratory manual (New York: Cold Spring Harbor Laboratory Press, 1989), or according to the manufacturer's instructions suggested conditions.
实施例1Example 1
1.1研究对象1.1 Research object
在经冠状动脉造影确诊为动脉粥样硬化的病人中,挑选病变支数在2条或2条以上,且病变狭窄程度在50%以上的病人作为病例。另取经冠状动脉造影确诊为没有动脉粥样硬化的正常人作为对照,尽量选取年龄、性别和籍贯与病例组相匹配。Among the patients diagnosed with atherosclerosis by coronary angiography, the patients with 2 or more lesions and a stenosis of more than 50% were selected as cases. In addition, normal people without atherosclerosis diagnosed by coronary angiography were selected as controls, and the age, sex, and place of origin were matched with the case group as much as possible.
在知情同意的基础上随机收集了187个病人和187个正常对照个体的外周血样本。Peripheral blood samples were randomly collected from 187 patients and 187 normal controls on the basis of informed consent.
1.2实验方法和结果1.2 Experimental methods and results
1.2.1 DNA提取1.2.1 DNA extraction
用常规酚氯仿法从人的外周血样本中提取DNA,浓度校正至20ng/ul后,用于常规PCR扩增。DNA was extracted from human peripheral blood samples by the conventional phenol-chloroform method, and the concentration was corrected to 20ng/ul for conventional PCR amplification.
1.2.2 PCR及测序引物的设计1.2.2 Design of PCR and sequencing primers
根据GenBank中VCAM1的基因组序列,设计和合成以下引物。具体引物如下表1所示。According to the genome sequence of VCAM1 in GenBank, the following primers were designed and synthesized. The specific primers are shown in Table 1 below.
表1引物序列表Table 1 Primer sequence list
1.2.3 VCAM1基因的PCR扩增1.2.3 PCR amplification of VCAM1 gene
以提取的DNA为模板,用Taq酶,在GeneAmp 9700 PCR仪上以Touchdown程序进行PCR扩增。反应条件为:94℃预变性2分钟,94℃变性30秒,63℃退火40秒,72℃延伸40秒,共10个循环,每个循环退火温度递减0.5℃;以后94℃变性30秒,58℃退火40秒,72℃延伸40秒,共30个循环;最后72℃延伸7分钟。PCR扩增产物经琼脂糖凝胶电泳验证。结果,获得VCAM1的扩增产物。Using the extracted DNA as a template, PCR amplification was performed on a GeneAmp 9700 PCR instrument with the Touchdown program using Taq enzyme. The reaction conditions are: pre-denaturation at 94°C for 2 minutes, denaturation at 94°C for 30 seconds, annealing at 63°C for 40 seconds, extension at 72°C for 40 seconds, a total of 10 cycles, and the annealing temperature decreases by 0.5°C for each cycle; after denaturation at 94°C for 30 seconds, Anneal at 58°C for 40 seconds, extend at 72°C for 40 seconds, a total of 30 cycles; finally extend at 72°C for 7 minutes. PCR amplification products were verified by agarose gel electrophoresis. As a result, an amplification product of VCAM1 was obtained.
1.2.4 SNP的发现和检测1.2.4 SNP discovery and detection
PCR产物经Resin树脂纯化后,用ABI-PRISMTM 377 DNA测序仪(美国应用生物系统公司appliedbiosystems(ABI))进行荧光标记末端终止法双向测序,用Polyphred软件(美国华盛顿大学http://droog.mbt.washington.edu/Polyphred.html)进行序列的判读和SNP确认。After the PCR products were purified by Resin resin, the ABI-PRISM TM 377 DNA sequencer (appliedbiosystems (ABI)) was used for bidirectional sequencing with fluorescent labeling end termination method, and Polyphred software (University of Washington, USA http://droog. mbt.washington.edu/Polyphred.html) for sequence interpretation and SNP confirmation.
结果,发现存在数个SNP,其中包括以下SNP:SEQ ID NO:1中256位C→T。As a result, several SNPs were found to exist, including the following SNP: C→T at position 256 in SEQ ID NO:1.
1.2.5 SNP基因分型和关联分析1.2.5 SNP genotyping and association analysis
用直接单向测序法进行SNP基因分型。即在动脉粥样硬化和/或冠心病病人和正常对照组中进行分型和关联分析。SNP genotyping by direct one-way sequencing. That is, typing and association analysis were performed in patients with atherosclerosis and/or coronary heart disease and normal controls.
对基因分型结果进行描述性统计分析,列联表进行卡方检验。观察基因型在病人和对照之间是否具有差异。Descriptive statistical analysis was performed on the genotyping results, and the chi-square test was performed on the contingency table. See if genotypes differ between patients and controls.
分析结果显示,在总共187个病人和187个正常对照中,VCAM1的256位的SNP在病人组和对照组之间存在显著差异:其中纯合子TT的频率在病人群中为4.3%,在对照中为1.1%,两者在90%置信区间内具有显著性差异(p=0.070)。The analysis results showed that in a total of 187 patients and 187 normal controls, the 256 SNPs of VCAM1 were significantly different between the patient group and the control group: the frequency of homozygous TT was 4.3% in the patient population and 4.3% in the control group. The average value was 1.1%, and there was a significant difference between the two in the 90% confidence interval (p=0.070).
上述结果证实了SEQ ID NO:1中256位的SNP与动脉粥样硬化和/或冠心病的发生存在着相关性。The above results confirm that the SNP at position 256 in SEQ ID NO: 1 is correlated with the occurrence of atherosclerosis and/or coronary heart disease.
实施例2Example 2
动脉粥样硬化和/或冠心病易感性检测试剂盒Atherosclerosis and/or Coronary Heart Disease Susceptibility Detection Kit
如实施例1所述,SEQ ID NO:1中256位C→T的突变与动脉粥样硬化和/或冠心病疾病密切相关。因此,可基于这个突变设计VCAM1基因特异性引物在以病人的DNA为模板进行扩增进行检测。As described in Example 1, the mutation of C→T at position 256 in SEQ ID NO: 1 is closely related to atherosclerosis and/or coronary heart disease. Therefore, based on this mutation, VCAM1 gene-specific primers can be designed to amplify and detect with the patient's DNA as a template.
制备一试剂盒(100人次),它含有:Prepare a test kit (100 person-times), which contains:
随机挑选102个人组成测试组,其中包括未知是否患动脉粥样硬化的对象、已知患动脉粥样硬化和/或冠心病病人和经检测无动脉粥样硬化的正常人。102 people were randomly selected to form a test group, including subjects who were unknown whether they had atherosclerosis, patients who were known to suffer from atherosclerosis and/or coronary heart disease, and normal people who had been tested without atherosclerosis.
抽取测试组中待检测对象的外周血3ml,使用常规方法(或使用特定的试剂盒)从血液中提取DNA。将动脉粥样硬化和/或冠心病检测试剂盒中的PCR引物稀释到1ìmol/ìl,以所提取的DNA为模板与所提供的引物进行PCR反应。PCR产物纯化后,用ABI-PRISMTM 377 DNA测序仪进行荧光标记末端终止法双向测序,用Polyphred软件进行序列的判读和SNP确认。Take 3ml of peripheral blood from the subject to be tested in the test group, and use conventional methods (or use a specific kit) to extract DNA from the blood. Dilute the PCR primers in the atherosclerosis and/or coronary heart disease detection kit to 1μmol/μl, and use the extracted DNA as a template to perform a PCR reaction with the provided primers. After the PCR products were purified, ABI-PRISM TM 377 DNA sequencer was used for bidirectional sequencing by fluorescence-labeled end termination method, and Polyphred software was used for sequence interpretation and SNP confirmation.
或者,将扩增产物与正常对照用变性高效液相色谱仪(DHPLC)进行色谱分析,也可检测出256位C→T。Alternatively, the chromatographic analysis of the amplified product and the normal control is performed with a denaturing high-performance liquid chromatograph (DHPLC), and the 256-position C→T can also be detected.
检测结果:Test results:
对于VCAM1存在256位C→T的对象,进一步通过常规方法检测以确认是否患有动脉粥样硬化情况。检测结果表明,含256位C→T的检测对象(尤其是TT纯化子)的动脉粥样硬化和/或冠心病易感性比例明显高于基因型为CC或CT的正常人群(高出至少3倍)。For subjects with 256 positions C→T in VCAM1, it is further detected by conventional methods to confirm whether they suffer from atherosclerosis. The test results show that the susceptibility ratio of atherosclerosis and/or coronary heart disease of the subjects containing 256 C→T (especially the TT purifier) is significantly higher than that of the normal population with genotype CC or CT (at least 3 times).
因此,这表明通过检测VCAM1的256位C→T,可进行动脉粥样硬化的辅助性检测和/或早期诊断。Therefore, this indicates that auxiliary detection and/or early diagnosis of atherosclerosis can be performed by detecting 256 C→T of VCAM1.
实施例3Example 3
动脉粥样硬化和/或冠心病易感性辅助性检测Auxiliary testing for susceptibility to atherosclerosis and/or coronary heart disease
重复实施例2的检测,不同点在于随机选取了90个人(检测前不知道是否有动脉粥样硬化症状)进行检测。The test in Example 2 was repeated, with the difference that 90 people (whose symptoms of atherosclerosis were not known before the test) were randomly selected for testing.
制备一试剂盒(100人次),它含有:Prepare a test kit (100 person-times), which contains:
抽取待检测对象的外周血3ml,使用常规方法(或使用特定的试剂盒)从血液中提取DNA。将动脉粥样硬化和/或冠心病检测试剂盒中的PCR引物稀释到1ìmol/ìl,以所提取的DNA为模板与所提供的引物进行PCR反应。PCR产物纯化后,用ABI-PRISMTM 377 DNA测序仪进行荧光标记末端终止法双向测序,用Polyphred软件进行序列的判读和SNP确认。Take 3ml of peripheral blood from the subject to be tested, and use conventional methods (or use a specific kit) to extract DNA from the blood. Dilute the PCR primers in the atherosclerosis and/or coronary heart disease detection kit to 1μmol/μl, and use the extracted DNA as a template to perform a PCR reaction with the provided primers. After the PCR products were purified, ABI-PRISM TM 377 DNA sequencer was used for bidirectional sequencing by fluorescence-labeled end termination method, and Polyphred software was used for sequence interpretation and SNP confirmation.
结果检测出6名对象在本发明的SNP位点为TT纯合子,进一步通过常规动脉造影方法确认,其中有4名对象有动脉粥样硬化。As a result, 6 subjects were detected to be TT homozygotes at the SNP site of the present invention, and further confirmed by conventional arteriography, among which 4 subjects had atherosclerosis.
在本发明提及的所有文献都在本申请中引用作为参考,就如同每一篇文献被单独引用作为参考那样。此外应理解,在阅读了本发明的上述讲授内容之后,本领域技术人员可以对本发明作各种改动或修改,这些等价形式同样落于本申请所附权利要求书所限定的范围。All documents mentioned in this application are incorporated by reference in this application as if each were individually incorporated by reference. In addition, it should be understood that after reading the above teaching content of the present invention, those skilled in the art can make various changes or modifications to the present invention, and these equivalent forms also fall within the scope defined by the appended claims of the present application.
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