CN100351271C - Active polypeptide of brown-spotted torrential frog, its gene and application in drug preparation - Google Patents
Active polypeptide of brown-spotted torrential frog, its gene and application in drug preparation Download PDFInfo
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- CN100351271C CN100351271C CNB2006100106285A CN200610010628A CN100351271C CN 100351271 C CN100351271 C CN 100351271C CN B2006100106285 A CNB2006100106285 A CN B2006100106285A CN 200610010628 A CN200610010628 A CN 200610010628A CN 100351271 C CN100351271 C CN 100351271C
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Abstract
本发明涉及一种活性多肽及其基因和在制药中的应用,属于生物医学领域。该活性多肽是从中国两栖类动物棕点湍蛙基因编码的一种单链多肽,分子量2664.36道尔顿,等电点9.70,多肽全序列一级结构为:Phe Leu Pro Leu Ala ValSer Leu Ala Ala Asn Phe Leu Pro Lys Leu Phe Cys Lys Ile Thr Lys Lys Cys-AMIDATION。编码棕点湍蛙活性多肽的基因由448个核苷酸组成,其中编码成熟棕点湍蛙活性多肽为第247-318位核苷酸。人工合成的棕点湍蛙活性多肽具有显著的抑制细菌和真菌生长的作用,可以作为制备病原微生物感染疾病的治疗药物被应用。The invention relates to an active polypeptide and its gene and its application in pharmacy, belonging to the field of biomedicine. The active polypeptide is a single-chain polypeptide encoded by the Chinese amphibian brown-spotted frog gene, with a molecular weight of 2664.36 Daltons and an isoelectric point of 9.70. The primary structure of the complete sequence of the polypeptide is: Phe Leu Pro Leu Ala ValSer Leu Ala Ala Asn Phe Leu Pro Lys Leu Phe Cys Lys Ile Thr Lys Lys Cys-AMIDATION. The gene encoding the active polypeptide of the brown-spotted frog consists of 448 nucleotides, wherein the nucleotides 247-318 encode the active polypeptide of the mature brown-spotted frog. The artificially synthesized active polypeptide of the brown-spotted frog has a significant effect of inhibiting the growth of bacteria and fungi, and can be used as a therapeutic drug for preparing pathogenic microorganism infection diseases.
Description
技术领域:Technical field:
本发明涉及一种棕点湍蛙(Amolops loloensis)活性多肽及其基因和在制药中的应用,属于生物医学领域。The invention relates to an active polypeptide of Amolops loloensis and its gene and application in pharmacy, belonging to the field of biomedicine.
背景技术:Background technique:
自从抗生素发明以来,人类在控制和治疗微生物感染疾病中取得了较大的成就。但随着“传统抗生素”的持续使用,不断产生出诸多新问题。目前,微生物抗药性已成为临床微生物感染疾病治疗的重大问题,以至于某些病原细菌已没有临床治疗的一线药物。万古霉素抗性的葡萄球菌、肠球菌以及其他革兰氏阴性感染疾病目前均是世界范围内的临床难题,三类主要引起脑膜炎的细菌在临床上也出现了强的抗药性,抗青霉素、氯霉素脑膜炎双球菌、肺炎球菌,对抗新头孢菌素抗生素的肺炎球菌也广泛出现。因此新一类抗生素的研制已成为当务之急和国际上的热点。研究发现,多肽抗生素具有广谱的抗菌活性,同时具有“传统抗生素”无法比拟的优越性:如在最小作用浓度时,快速而广谱地杀灭微生物(包括目前临床抗药菌);对真菌也有抑制作用;不会诱导抗药菌株的产生;对于局部感染和全身感染都有效,有希望成为新一代抗菌剂,其研制目前受到广泛重视。Since the invention of antibiotics, humans have made great achievements in the control and treatment of microbial infection diseases. However, with the continuous use of "traditional antibiotics", many new problems continue to arise. At present, microbial resistance has become a major problem in the treatment of clinical microbial infection diseases, so that some pathogenic bacteria have no first-line drugs for clinical treatment. Vancomycin-resistant staphylococci, enterococci and other Gram-negative infectious diseases are currently clinical problems worldwide. Three types of bacteria that mainly cause meningitis have also emerged clinically with strong drug resistance. Penicillin-resistant , chloramphenicol, meningococci, pneumococci, and pneumococci resistant to neocephalosporin antibiotics are also widely present. Therefore, the development of a new class of antibiotics has become a top priority and an international hotspot. Studies have found that peptide antibiotics have broad-spectrum antibacterial activity, and at the same time have incomparable advantages over "traditional antibiotics": such as rapid and broad-spectrum killing of microorganisms (including current clinical drug-resistant bacteria) at the minimum effective concentration; It also has inhibitory effect; it will not induce the production of drug-resistant strains; it is effective for both local infection and systemic infection, and it is expected to become a new generation of antibacterial agents, and its development is currently receiving extensive attention.
很多两栖类动物在中国属于传统中药和民族药物而广泛应用,如中华蟾蜍(Bufo gargarizans),大蹼铃蟾(Bombina maxima),黑斑蛙(pelophylaxnigromaculata),沼蛙(Hylarana guentheri)和泽蛙(Euphlyctislimnocharis)等。这些两栖类动物的皮肤和内脏具有广泛的药理活性和临床疗效。已报道药理活性有广谱抗微生物作用、抗肿瘤、镇痛、局部麻醉、免疫调节、心血管系统作用等。在国外,两栖类皮肤特定药理活性单体化合物的寻找已是新药发明的热点。据国内外文献报道,已从各种生物来源分离得到不同的活性多肽,而且有些已进入临床治疗。如从爪蟾(Xenopus laevis)皮肤分泌液获得的活性多肽Magainin具广谱抗微生物作用,同时具有抗肿瘤活性,在美国已获准作为广谱抗菌药物,其基因工程产品已进入三期临床;Intrabiotics公司生产的活性多肽IB-367已获准用于治疗癌症病人因多种细菌感染而引起的口腔溃疡一期临床试验;Applied Microbiology公司与Astra公司合作用活性多肽nisin治疗胃溃疡的临床试验也取得良好的疗效。Many amphibians are widely used in traditional Chinese medicine and ethnic medicine in China, such as Chinese toad (Bufo gargarizans), large webbed bell toad (Bombina maxima), black-spotted frog (pelophylax nigromaculata), marsh frog (Hylarana guentheri) and marsh frog ( Euphlyctis limnocharis) and so on. The skin and viscera of these amphibians have a wide range of pharmacological activities and clinical efficacy. Pharmacological activities have been reported to include broad-spectrum antimicrobial effects, antitumor effects, analgesia, local anesthesia, immune regulation, and cardiovascular system effects. In foreign countries, the search for specific pharmacologically active monomeric compounds in amphibian skin has become a hot spot in the invention of new drugs. According to domestic and foreign literature reports, different active polypeptides have been isolated from various biological sources, and some have entered clinical treatment. For example, the active polypeptide Magainin obtained from the skin secretion of Xenopus laevis has a broad-spectrum antimicrobial effect and anti-tumor activity. It has been approved as a broad-spectrum antibacterial drug in the United States, and its genetic engineering product has entered Phase III clinical trials; Intrabiotics The active peptide IB-367 produced by the company has been approved for the first phase of clinical trials in the treatment of oral ulcers caused by various bacterial infections in cancer patients; the clinical trial of the active peptide nisin in the treatment of gastric ulcers in cooperation between Applied Microbiology and Astra has also achieved good results Efficacy.
我国对两栖类药物的应用有悠久的历史,但对其活性成分和药理性质的研究主要集中于生物碱等有机小分子,对其皮肤活性肽类物质研究不多。棕点湍蛙(Amolops loloensis)主要分布于四川、云南省,是我国特色资源动物之一。The application of amphibian drugs has a long history in my country, but the research on their active ingredients and pharmacological properties mainly focuses on small organic molecules such as alkaloids, and there are not many studies on their skin active peptides. The brown-spotted turbulent frog (Amolops loloensis) is mainly distributed in Sichuan and Yunnan provinces, and is one of the characteristic resource animals in my country.
发明人将本发明的棕点湍蛙活性多肽全序列氨基酸结构经蛋白质数据库进行搜寻比较,未发现有任何相同多肽。发明人将本发明的棕点湍蛙活性多肽编码基因经基因数据库进行搜寻比较,未发现有任何相同基因。The inventor searched and compared the amino acid structure of the complete sequence of the active polypeptide of the brown-spotted frog of the present invention through protein databases, and found no identical polypeptides. The inventor searched and compared the gene encoding the active polypeptide of the brown-spotted frog of the present invention through a gene database, and found no identical genes.
发明内容:Invention content:
本发明的目的在于提供一种新的具有广谱抗微生物(包括革兰氏阴、阳性细菌,真菌)的棕点湍蛙活性多肽及其基因和在制药中的应用。The purpose of the present invention is to provide a new broad-spectrum anti-microbial (including Gram-negative, positive bacteria, fungi) active polypeptide and its gene and application in pharmacy.
为了实现本发明的目的,本发明提供如下技术方案:In order to realize the purpose of the present invention, the present invention provides following technical scheme:
棕点湍蛙活性多肽:Brown dot frog active polypeptide:
棕点湍蛙活性多肽是中国两栖类棕点湍蛙活性多肽基因编码的一种单链多肽,分子量2664.36道尔顿,等电点9.70,多肽全序列一级结构为:Phe Leu ProLeu Ala Val Ser Leu Ala Ala Asn Phe Leu Pro Lys Leu Phe Cys Lys Ile Thr Lys LysCys-AMIDATION。Brown-spotted frog active polypeptide is a single-chain polypeptide encoded by the Chinese amphibian brown-spotted frog active polypeptide gene, with a molecular weight of 2664.36 Daltons and an isoelectric point of 9.70. The primary structure of the complete sequence of the polypeptide is: Phe Leu ProLeu Ala Val Ser Leu Ala Ala Asn Phe Leu Pro Lys Leu Phe Cys Lys Ile Thr Lys Lys Cys-AMIDATION.
棕点湍蛙活性多肽基因的克隆包括:The cloning of the active polypeptide gene of the brown-spotted frog includes:
棕点湍蛙皮肤总RNA提取,mRNA纯化,mRNA反转录及cDNA文库构建,设计引物,利用PCR方法筛选棕点湍蛙活性多肽基因。扩增引物长度为25个核苷酸,其序列为5’ATAAGACATCTGATGTGCATTTAGC 3’,PCR另一扩增引物为CLONTECH公司SMARTTM cDNA Library Construction Kit中的5’PCR Primer引物,其序列为5’AAGCAGTGGTATCAACGCAGAGT 3’。所获阳性单克隆进行基因核苷酸序列测定。基因测序结果表明编码棕点湍蛙活性多肽的基因由448个核苷酸组成,自5’端至3’端序列为:Extraction of total RNA from the skin of Rana japonica, purification of mRNA, reverse transcription of mRNA and construction of cDNA library, design of primers, and screening of active polypeptide genes of Rana japonica by PCR. The length of the amplification primer is 25 nucleotides, and its sequence is 5'ATAAGACATCTGATGTGCATTTAGC 3'. The other PCR amplification primer is the 5'PCR Primer in the SMART TM cDNA Library Construction Kit of CLONTECH Company, and its sequence is 5'AAGCAGTGGTATCAACGCAGAGT 3 '. The obtained positive single clones were subjected to gene nucleotide sequence determination. The results of gene sequencing show that the gene encoding the active polypeptide of the brown-spotted frog consists of 448 nucleotides, and the sequence from the 5' end to the 3' end is:
taagcagtgg tatcaacgca gagtggccat tacggccggg ggagacctcc actgaagtct 60taagcagtgg tatcaacgca gagtggccat tacggccggg ggagacctcc actgaagtct 60
tccagctctc tacattctca gcaccaactg aactacccga acccaaagat gttcaccttg 120tccagctctc tacattctca gcaccaactg aactacccga acccaaagat gttcaccttg 120
aagaaatccc tgttactcct tttcttcctt gggaccatca acttatctct ctgcgagcaa 180aagaaatccc tgttactcct tttcttcctt gggaccatca acttatctct ctgcgagcaa 180
gagagagatg ccgatgagga agaaagaaga gatgatgatg aaatggatgt tgaagtggaa 240gagagagatg ccgatgagga agaaagaaga gatgatgatg aaatggatgt tgaagtggaa 240
aaacgatttt taccacttgc ggtcagtctg gccgctaatt tcttgcccaa actattttgt 300aaacgatttt taccacttgc ggtcagtctg gccgctaatt tcttgcccaa actattttgt 300
aaaataacca aaaaatgttg aaactctgaa aatggaattg gaaatcatct gatgttgaat 360aaaataacca aaaaatgttg aaactctgaa aatggaattg gaaatcatct gatgttgaat 360
atcatttagc taaatgcaca tcagatgtct tataaaaaaa taaagatatc tcaaacatca 420atcatttagc taaatgcaca tcagatgtct tataaaaaaa taaagatatc tcaaacatca 420
aaaaaaaaaa aaaaaaaaaa aaaaaaaa 448aaaaaaaaaa aaaaaaaaaa aaaaaaaa 448
编码棕点湍蛙成熟活性多肽为第247-318位核苷酸,其氨基酸序列为:The 247th-318th nucleotides of the polypeptide coding for the mature activity of the brown-spotted frog are as follows:
Phe Leu Pro Leu Ala Val Ser Leu Ala Ala Asn Phe Leu Pro Lys LeuPhe Leu Pro Leu Ala Val Ser Leu Ala Ala Asn Phe Leu Pro Lys Leu
1 5 10 151 5 10 15
Phe Cys Lys Ile Thr Lys Lys Cys-AMIDATION。Phe Cys Lys Ile Thr Lys Lys Cys-AMIDATION.
2020
棕点湍蛙活性多肽基因作为基因工程制备棕点湍蛙活性多肽的应用。The brown-spotted frog active polypeptide gene is used as an application of genetic engineering to prepare the brown-spotted frog active polypeptide.
棕点湍蛙活性多肽的制备方法:The preparation method of the brown-spotted turbulent frog active polypeptide:
根据编码棕点湍蛙活性多肽的基因推断棕点湍蛙活性多肽的氨基酸序列,用自动多肽合成仪合成其全序列。通过HPLC反相C18柱层析脱盐、纯化。然后用HPLC方法鉴定其纯度,分子量测定采用快原子轰击质谱法(Fast atom bombardmentmass spectrometry,FAB-MS),等电聚焦电泳测定等电点,用自动氨基酸测序仪测定氨基酸序列结构。The amino acid sequence of the active polypeptide of the frog was deduced according to the gene encoding the active polypeptide of the brown-spotted frog, and its complete sequence was synthesized by an automatic peptide synthesizer. Desalted and purified by HPLC reverse phase C 18 column chromatography. Then its purity was identified by HPLC, the molecular weight was determined by Fast atom bombardment mass spectrometry (FAB-MS), the isoelectric point was determined by isoelectric focusing electrophoresis, and the amino acid sequence structure was determined by an automatic amino acid sequencer.
棕点湍蛙活性多肽具有显著的抑制细菌和真菌生长的作用,可以作为制备病原微生物感染疾病的治疗药物的应用。The brown-spotted frog active polypeptide has a significant effect of inhibiting the growth of bacteria and fungi, and can be used as a therapeutic drug for preparing pathogenic microorganism infection diseases.
本发明的有益效果在于:The beneficial effects of the present invention are:
由棕点湍蛙活性多肽编码基因推导其氨基酸结构,合成的棕点湍蛙活性多肽具有显著的抑制细菌和真菌生长的作用。该棕点湍蛙活性多肽具有结构简单、人工合成方便、抗菌谱系广的有益特点。The amino acid structure is deduced from the coding gene of the active polypeptide of the brown-spotted frog, and the synthetic active polypeptide of the brown-spotted frog has a significant effect of inhibiting the growth of bacteria and fungi. The brown-spotted frog active polypeptide has the beneficial characteristics of simple structure, convenient artificial synthesis and wide antibacterial spectrum.
具体实施方式:Detailed ways:
实施例一:Embodiment one:
棕点湍蛙活性多肽基因克隆:Cloning of the active polypeptide gene of the brown-spotted turbulent frog:
I、棕点湍蛙皮肤总RNA提取:I. Extraction of total RNA from brown-spotted turbulent frog skin:
A.活体棕点湍蛙用水清洗干净,放入液氮中速冻4小时,取皮肤组织,称重,取300mg皮肤组织,加入10ml总RNA提取缓冲液(Trizol溶液,美国GIBCOBRL公司产品),于20ml玻璃匀浆器中匀浆30分钟。A. The living brown-spotted turbulent frog was cleaned with water, put into liquid nitrogen and quick-frozen for 4 hours, got the skin tissue, weighed, got 300mg skin tissue, added 10ml total RNA extraction buffer (Trizol solution, U.S. GIBCOBRL company product), in Homogenize in a 20ml glass homogenizer for 30 minutes.
B.加入等体积酚/氯仿溶液,剧烈混匀,室温放置10分钟,4℃,12000rpm离心10分钟,弃除沉淀。B. Add an equal volume of phenol/chloroform solution, mix vigorously, leave at room temperature for 10 minutes, centrifuge at 12,000 rpm for 10 minutes at 4°C, and discard the precipitate.
C.上清加入等体积的异丙醇,室温放置10分钟,4℃,12000rpm离心10分钟,沉淀用75%乙醇洗一次,晾干,管底沉淀物即为棕点湍蛙皮肤总RNA。C. Add an equal volume of isopropanol to the supernatant, leave it at room temperature for 10 minutes, centrifuge at 12,000 rpm for 10 minutes at 4°C, wash the precipitate once with 75% ethanol, and dry it in the air.
II、棕点湍蛙皮肤mRNA的纯化:II. Purification of brown-spotted frog skin mRNA:
棕点湍蛙皮肤mRNA分离纯化采用美国PROMEGA公司的PolyATtractmRNA Isolation Systems试剂盒。To isolate and purify the mRNA from the skin of the brown-spotted frog, the PolyATtract (R) mRNA Isolation Systems kit from PROMEGA, USA was used.
A.取棕点湍蛙皮肤总RNA 500μg溶于500μl DEPC水中,放入65℃水浴10分钟,加人3μl的Oligo(dT)探针和13μl 20×SSC溶液,混匀,放置室温冷却,称为A液。A. Dissolve 500 μg of total RNA from brown-spotted frog skin in 500 μl DEPC water, put it in a water bath at 65°C for 10 minutes, add 3 μl of Oligo (dT) probe and 13 μl of 20×SSC solution, mix well, place it at room temperature to cool, weigh For liquid A.
B.磁珠(SA-PMP)的洗涤:将磁珠轻弹混匀,至磁力架吸附30秒,弃上清,加0.5×SSC 0.3ml,至磁力架吸附30秒,最后加0.1ml 0.5×SSC悬浮,称之为B液。B. Washing of magnetic beads (SA-PMP): Flick and mix the magnetic beads until the magnetic stand absorbs for 30 seconds, discard the supernatant, add 0.5×SSC 0.3ml, let the magnetic stand absorb for 30 seconds, and finally add 0.1ml 0.5 ×SSC suspension, called B solution.
C.将A液加入B液中,室温放置10分钟,至磁力架吸附30秒,弃上清,用0.1×SSC洗涤4次,最后弃上清,加0.1ml DEPC水悬浮,至磁力架上吸附30秒,将上清移至新的试管,再加入0.15ml DEPC水重新悬浮,至磁力架吸附30秒,移上清至上述试管,则上清中为纯化的棕点湍蛙皮肤mRNA。C. Add liquid A to liquid B, let stand at room temperature for 10 minutes, let the magnetic stand absorb for 30 seconds, discard the supernatant, wash 4 times with 0.1×SSC, finally discard the supernatant, add 0.1ml DEPC water to suspend, and put it on the magnetic stand Adsorb for 30 seconds, transfer the supernatant to a new test tube, then add 0.15ml DEPC water to re-suspend, absorb on the magnetic stand for 30 seconds, transfer the supernatant to the above test tube, and the supernatant contains purified brown-spotted frog skin mRNA.
D.加入1/10体积3M乙酸钠,pH5.2,等体积异丙醇,于-70℃放置30分钟,4℃,12000rpm离心10分钟,弃上清,沉淀溶解于10μl DEPC水中。D. Add 1/10 volume of 3M sodium acetate, pH 5.2, equal volume of isopropanol, place at -70°C for 30 minutes, centrifuge at 12000rpm at 4°C for 10 minutes, discard the supernatant, and dissolve the precipitate in 10μl DEPC water.
III、棕点湍蛙皮肤cDNA文库构建:采用CLONTECH公司CreatorTMSMARTTM cDNA Library Construction Kit质粒cDNA文库构建试剂盒。III. Construction of the cDNA library of the brown-spotted frog skin: the plasmid cDNA library construction kit of Creator TM SMART TM cDNA Library Construction Kit from CLONTECH Company was used.
A.cDNA第一链合成(mRNA反转录):A. cDNA first-strand synthesis (mRNA reverse transcription):
1.在0.5ml无菌的离心管加入1μl棕点湍蛙皮肤mRNA、1μl SMARTIV寡聚核苷酸、1μl CDS III/3’PCR引物,加2μl去离子水使总体积达到5μl。1. Add 1 μl brown-spotted frog skin mRNA, 1 μl SMARTIV oligonucleotide, 1 μl CDS III/3’ PCR primer to a 0.5 ml sterile centrifuge tube, and add 2 μl deionized water to make the total volume reach 5 μl.
2.混匀离心管中的试剂并短暂离心,72℃保温2分钟。2. Mix the reagents in the centrifuge tube and centrifuge briefly, and incubate at 72°C for 2 minutes.
3.将离心管在冰上孵育2分钟。3. Incubate the tube on ice for 2 minutes.
4.在离心管中加入以下试剂2.0μl 5×第一链缓冲、1.0μl 20mM二硫苏糖醇、1.0μl 10mM dNTP混合物、1.0μl PowerScript反转录酶。4. Add the following reagents to the centrifuge tube: 2.0μl 5×first-strand buffer, 1.0μl 20mM dithiothreitol, 1.0μl 10mM dNTP mixture, 1.0μl PowerScript reverse transcriptase.
5.混合离心管中试剂并短暂离心,在42℃保温1小时。5. Mix the reagents in the centrifuge tube and centrifuge briefly, and incubate at 42°C for 1 hour.
6.将离心管置于冰上中止第一链的合成。6. Place the centrifuge tube on ice to stop first-strand synthesis.
7.从离心管取2μl所合成的cDNA第一链备用。7. Take 2 μl of the synthesized cDNA first strand from the centrifuge tube for use.
B.采用长末端聚合酶链式反应(LD-PCR)方法扩增第二链B. Amplification of the Second Strand Using the Long-Term Polymerase Chain Reaction (LD-PCR) Method
1. 95℃预热PCR仪。1. Preheat the PCR instrument at 95°C.
2.将2μl cDNA第一链(mRNA反转录)、80μl去离子水、10μl 10×Advantage 2PCR缓冲、2μl 50×dNTP混合物、2μl 5’PCR引物、2μl CDS III/3’PCR引物以及2μl大肠杆菌聚合酶离心管进行反应。2. Mix 2μl cDNA first strand (mRNA reverse transcription), 80μl deionized water, 10μl 10×Advantage 2PCR buffer, 2μl 50×dNTP mixture, 2μl 5’PCR primer, 2μl CDS III/3’PCR primer and 2μl large intestine Bacillus polymerase centrifuge tube for reaction.
3.在PCR仪中按以下程序扩增:3. Amplify in the PCR instrument according to the following procedures:
①95℃ 20秒钟①95℃ for 20 seconds
②22个循环:②22 cycles:
95℃ 5秒钟95℃ for 5 seconds
68℃ 6分钟68℃ for 6 minutes
4.循环结束后,将离心管中合成的cDNA双链进行抽提。4. After the cycle is over, extract the double-strand cDNA synthesized in the centrifuge tube.
C.PCR产物用PROMEGA公司的WizardSV Gel and PCR Clean-UpSystem试剂盒进行抽提回收,步骤如下:C.PCR product is extracted and recovered with the Wizard (R) SV Gel and PCR Clean-UpSystem kit of PROMEGA company, and the steps are as follows:
1.将通过PCR得到的cDNA双链加入等体积的膜结合缓冲颠倒混匀,然后将混和液转入离心纯化柱,室温静置5分钟,使DNA充分与硅胶膜结合。16,000g离心1分钟,倒掉收集管中的废液。1. Add the double-strand cDNA obtained by PCR into an equal volume of membrane-binding buffer and mix by inversion, then transfer the mixture to a centrifugal purification column, and let it stand at room temperature for 5 minutes to fully bind the DNA to the silica gel membrane. Centrifuge at 16,000g for 1 minute and discard the waste in the collection tube.
2.加入700μl的洗脱液(含乙醇)于离心纯化柱中,16,000g离心1分钟,倒掉收集管中的废液。2. Add 700 μl of eluent (containing ethanol) to the centrifugal purification column, centrifuge at 16,000 g for 1 minute, and discard the waste liquid in the collection tube.
3.重复步骤2。3. Repeat step 2.
4. 16,000g离心5分钟。4. Centrifuge at 16,000 g for 5 minutes.
5.将离心纯化柱置于新的离心管中。5. Place the spin column into a new centrifuge tube.
6.加入30μl超纯水,在室温下静置5分钟。6. Add 30 μl of ultrapure water and let stand at room temperature for 5 minutes.
7. 16,000g离心1分钟,管底溶液即为所纯化过的cDNA双链。7. Centrifuge at 16,000g for 1 minute, and the solution at the bottom of the tube is the purified double-stranded cDNA.
D.大肠杆菌DH5α感受态细胞的制备:D. Preparation of Escherichia coli DH5α competent cells:
1.挑取单个DH5α菌落,接种于3ml不含氨苄青霉素的LB培养基中,37℃培养过夜,次日取上述菌液按比例1∶100再接种于50ml LB培养液中,37℃振荡2小时。当OD600值达到0.35时,收获细菌培养物。1. Pick a single DH5α colony, inoculate it in 3ml of LB medium without ampicillin, and culture it overnight at 37°C. The next day, take the above bacterial solution and inoculate it in 50ml of LB culture medium at a ratio of 1:100, shake at 37°C for 2 Hour. Bacterial cultures were harvested when the OD600 value reached 0.35.
2.将细菌转移到一个无菌、一次性使用的、用冰预冷的50ml聚丙烯管中,在冰上方置10min,使培养物冷却至0℃。2. Transfer the bacteria to a sterile, single-use, ice-precooled 50ml polypropylene tube, place on ice for 10min, and cool the culture to 0°C.
3.于4℃以4100r/min离心10min,以回收细胞。3. Centrifuge at 4100r/min for 10min at 4°C to recover the cells.
4.倒出培养液,将管倒置1min以使最后的痕量培养液流尽。4. Pour off the culture medium and invert the tube for 1 min to drain the last trace of the culture medium.
5.每50ml初始培养液且30ml预冷的0.1mol/L CaCl2-MgCl2溶液(80mmol/L MgCl2,20mmol/L CaCl2)重悬每份细胞沉淀。5. Resuspend each cell pellet in 30 ml of pre-cooled 0.1 mol/L CaCl 2 -MgCl 2 solution (80 mmol/L MgCl 2 , 20 mmol/L CaCl 2 ) for every 50 ml of initial culture medium.
6.于4℃以4100r/min离心10min,以回收细胞。6. Centrifuge at 4100r/min for 10min at 4°C to recover the cells.
7.倒出培养液,将管倒置1min以使最后的痕量培养液流尽。7. Pour off the culture medium and invert the tube for 1 min to allow the last trace of the culture medium to flow out.
8.每50ml初始培养物用2ml用冰预冷的0.1mol/L CaCl2重悬每份细胞沉淀,分装后备用。8. For every 50ml of initial culture, resuspend each cell pellet with 2ml of ice-cooled 0.1mol/L CaCl 2 , aliquot and set aside.
E.酶切、连接以及连接产物的转化:E. Digestion, ligation and conversion of ligation products:
1.在微量离心管中加入1μl Takara pMD18-T载体、4μl棕点湍蛙cDNA双链溶液,全量为5μl。1. Add 1 μl of Takara pMD18-T carrier and 4 μl of brown-spotted frog cDNA double-strand solution in a microcentrifuge tube, the total volume is 5 μl.
2.加入5μl(等量)的连接酶缓冲混合物。2. Add 5 [mu]l (equal volume) of ligase buffer mix.
3. 16℃反应2小时。3. React at 16°C for 2 hours.
4.全量(10μl)加入至100μl DH5α感受态细胞中,冰中放置30分钟。4. Add the whole amount (10μl) to 100μl DH5α competent cells, and place in ice for 30 minutes.
5.42℃加热90秒钟后,再在冰中放置1分钟。After heating at 5.42°C for 90 seconds, place in ice for 1 minute.
6.加入37℃温浴过的LB培养基890μl,37℃缓慢振荡培养60分钟。6. Add 890 μl of LB medium that has been warmed at 37°C, and culture with slow shaking at 37°C for 60 minutes.
7.取200μl涂布于含有X-Gal、IPTG、Amp的LB培养基上37℃培养16小时,形成单菌落。7. Take 200 μl and spread it on the LB medium containing X-Gal, IPTG, and Amp and culture it at 37° C. for 16 hours to form a single colony.
8.每个LB平皿用5ml LB液体培养基洗涤菌落,加30%甘油冻存。构建的cDNA大约含1×106个单独克隆。8. Wash the colony with 5ml LB liquid medium for each LB plate, add 30% glycerol and freeze it. The constructed cDNA contained approximately 1×10 6 individual clones.
IV、棕点湍蛙活性多肽基因克隆筛选:IV. Cloning and Screening of Active Polypeptide Genes of Brown-spotted Frog:
扩增引物长度为25个核苷酸,其序列为5’ATAAGACATCTGATGTGCATTTAGC 3’,PCR另一扩增引物为CLONTECH公司SMARTTM cDNA Library Construction Kit中的5’PCR Primer引物,其序列为5’AAGCAGTGGTATCAACGCAGAGT 3’。The length of the amplification primer is 25 nucleotides, and its sequence is 5'ATAAGACATCTGATGTGCATTTAGC 3'. The other PCR amplification primer is the 5'PCR Primer in the SMART TM cDNA Library Construction Kit of CLONTECH Company, and its sequence is 5'AAGCAGTGGTATCAACGCAGAGT 3 '.
PCR反应在如下条件下进行:94℃30秒钟,52℃45秒钟和72℃2分30秒钟,35个循环。The PCR reaction was carried out under the following conditions: 94°C for 30 seconds, 52°C for 45 seconds and 72°C for 2 minutes and 30 seconds, 35 cycles.
首先滴定构建的细菌cDNA文库,然后用含100μg/ml氨苄青霉素的LB培养基稀释至适当的细菌浓度(大约5000个细菌/毫升,和30个细菌/毫升分别用于首轮筛选第二轮筛选),在96孔培养板上按8×8矩阵铺板(共64孔,每孔100μl),37℃过夜培养。按行、列分别合并细菌培养液,有16个样品进行PCR鉴定,交叉阳性孔细菌样品进入第二轮筛选。First titrate the constructed bacterial cDNA library, and then dilute it with LB medium containing 100 μg/ml ampicillin to an appropriate bacterial concentration (approximately 5000 bacteria/ml, and 30 bacteria/ml for the first round of screening and the second round of screening respectively) ), plated in an 8×8 matrix on a 96-well culture plate (a total of 64 wells, 100 μl per well), and cultured overnight at 37°C. Bacterial culture solutions were merged in rows and columns, and 16 samples were identified by PCR, and bacterial samples from cross-positive wells entered the second round of screening.
V、棕点湍蛙活性多肽基因序列测定和结果:V. Determination and results of the active polypeptide gene sequence of the brown-spotted turbulent frog:
提取质粒DNA用双脱氧法测定核苷酸序列,使用仪器为美国AppliedBiosystems373A全自动核苷酸序列测定仪,测序引物为BcaBESTTM SequencingPrimer RV-M和BcaBESTTM Sequencing Primer M13-47,BcaBESTTM SequencingPrimer RV-M序列:5`GAGCGGATAACAATTTCACACAGG 3’,BcaBESTTMSequencing Primer M13-47:5’CGCCAGGGTTTTCCCAGTCACGAC 3’。基因测序结果自5’端至3’端序列为:Extract the plasmid DNA and determine the nucleotide sequence by the dideoxy method. The instrument used is the AppliedBiosystems373A automatic nucleotide sequencer in the United States. The sequencing primers are BcaBEST TM SequencingPrimer RV-M and BcaBEST TM Sequencing Primer M13-47, BcaBEST TM SequencingPrimer RV- M sequence: 5'GAGCGGATAACAATTTCACACAGG 3', BcaBEST ™ Sequencing Primer M13-47: 5'CGCCAGGGTTTTCCCAGTCACGAC 3'. The gene sequencing results from the 5' end to the 3' end sequence are:
taagcagtgg tatcaacgca gagtggccat tacggccggg ggagacctcc actgaagtct 60taagcagtgg tatcaacgca gagtggccat tacggccggg ggagacctcc actgaagtct 60
tccagctctc tacattctca gcaccaactg aactacccga acccaaagat gttcaccttg 120tccagctctc tacattctca gcaccaactg aactacccga acccaaagat gttcaccttg 120
aagaaatccc tgttactcct tttcttcctt gggaccatca acttatctct ctgcgagcaa 180aagaaatccc tgttactcct tttcttcctt gggaccatca acttatctct ctgcgagcaa 180
gagagagatg ccgatgagga agaaagaaga gatgatgatg aaatggatgt tgaagtggaa 240gagagagatg ccgatgagga agaaagaaga gatgatgatg aaatggatgt tgaagtggaa 240
aaacgatttt taccacttgc ggtcagtctg gccgctaatt tcttgcccaa actattttgt 300aaacgatttt taccacttgc ggtcagtctg gccgctaatt tcttgcccaa actattttgt 300
aaaataacca aaaaatgttg aaactctgaa aatggaattg gaaatcatct gatgttgaat 360aaaataacca aaaaatgttg aaactctgaa aatggaattg gaaatcatct gatgttgaat 360
atcatttagc taaatgcaca tcagatgtct tataaaaaaa taaagatatc tcaaacatca 420atcatttagc taaatgcaca tcagatgtct tataaaaaaa taaagatatc tcaaacatca 420
aaaaaaaaaa aaaaaaaaaa aaaaaaaa 448aaaaaaaaaa aaaaaaaaaa aaaaaaaa 448
棕点湍蛙活性多肽基因核苷酸的序列表为:序列长度为448个碱基,序列类型:核酸,链数:单链,拓扑学:直链状,序列种类:cDNA,来源:棕点湍蛙皮肤。The nucleotide sequence list of the active polypeptide gene of the brown-spotted frog is as follows: the sequence length is 448 bases, the sequence type: nucleic acid, the number of chains: single-stranded, the topology: linear, the sequence type: cDNA, and the source: brown dot Turbulent Frog Skin.
编码棕点湍蛙成熟活性多肽为第247-318位核苷酸,其氨基酸序列为:The 247th-318th nucleotides of the polypeptide coding for the mature activity of the brown-spotted frog are as follows:
Phe Leu Pro Leu Ala Val Ser Leu Ala Ala Asn Phe Leu Pro Lys LeuPhe Leu Pro Leu Ala Val Ser Leu Ala Ala Asn Phe Leu Pro Lys Leu
1 5 10 151 5 10 15
Phe Cys Lys Ile Thr Lys Lys Cys-AMIDATION。Phe Cys Lys Ile Thr Lys Lys Cys-AMIDATION.
2020
棕点湍蛙活性多肽基因作为基因工程制备棕点湍蛙活性多肽的应用。The brown-spotted frog active polypeptide gene is used as an application of genetic engineering to prepare the brown-spotted frog active polypeptide.
实施例二:Embodiment two:
制备棕点湍蛙活性多肽:Preparation of brown-spotted frog active polypeptide:
I、棕点湍蛙活性多肽的制备方法:根据编码棕点湍蛙活性多肽的基因推断棕点湍蛙活性多肽的氨基酸序列,用自动多肽合成仪合成其全序列。通过HPLC反相C18柱层析脱盐、纯化。I. The preparation method of the active polypeptide of Rana variegata: infer the amino acid sequence of the active polypeptide of Rana variegata according to the gene encoding the active polypeptide of Rana variegata, and synthesize its full sequence with an automatic polypeptide synthesizer. Desalted and purified by HPLC reverse phase C 18 column chromatography.
II、分子量测定采用快原子轰击质谱法(Fast atom bombardment massspectrometry,FAB-MS),以甘油∶间硝基苄醇∶二甲亚砜(1∶1∶1,V∶V∶V,体积比)为底物,Cs+作为轰击粒子,电流为1μA,发射电压为25Kv。II. The molecular weight is determined by fast atom bombardment mass spectrometry (FAB-MS), with glycerol: m-nitrobenzyl alcohol: dimethyl sulfoxide (1: 1: 1, V: V: V, volume ratio) As the substrate, Cs + as the bombardment particles, the current is 1μA, and the emission voltage is 25Kv.
III、纯化的棕点湍蛙活性多肽用高效液相色谱HPLC方法鉴定其纯度,分子量测定采用快原子轰击质谱法,等电聚焦电泳测定等电点,用自动氨基酸测序仪测定氨基酸序列结构。III. The purity of the purified brown-spotted frog active polypeptide was identified by high-performance liquid chromatography (HPLC), the molecular weight was determined by fast atom bombardment mass spectrometry, the isoelectric point was determined by isoelectric focusing electrophoresis, and the amino acid sequence structure was determined by an automatic amino acid sequencer.
棕点湍蛙活性多肽是中国两栖类动物棕点湍蛙活性多肽基因编码的一种单链多肽,分子量2664.36道尔顿,等电点9.70,多肽氨基酸全序列一级结构为:苯丙氨酸-亮氨酸-脯氨酸-亮氨酸-丙氨酸-缬氨酸-丝氨酸-亮氨酸-丙氨酸-丙氨酸-天冬酰胺-苯丙氨酸--亮氨酸-脯氨酸-赖氨酸-异亮氨酸-苏氨酸-赖氨酸-赖氨酸-酰胺化半胱氨酸(Phe Leu Pro Leu Ala Val Ser Leu Ala Ala Asn Phe Leu Pro Lys LeuPhe Cys Lys Ile Thr Lys Lys Cys-AMIDATION)。Brown-spotted frog active polypeptide is a single-chain polypeptide encoded by the Chinese amphibian brown-spotted frog active polypeptide gene, with a molecular weight of 2664.36 Daltons and an isoelectric point of 9.70. The primary structure of the complete amino acid sequence of the polypeptide is: phenylalanine -Leucine-Proline-Leucine-Alanine-Valine-Serine-Leucine-Alanine-Alanine-Asparagine-Phenylalanine--Leucine-Pro Amino Acid-Lysine-Isoleucine-Threonine-Lysine-Lysine-Amidated Cysteine (Phe Leu Pro Leu Ala Val Ser Leu Ala Ala Ala Asn Phe Leu Pro Lys LeuPhe Cys Lys Ile Thr Lys Lys Cys-AMIDATION).
实施例三:Embodiment three:
棕点湍蛙活性多肽抑制细菌生长的作用:The effect of the active polypeptide of the brown-spotted frog on inhibiting the growth of bacteria:
抗菌活性检测,采用杯碟法,培养基为普通琼脂培养基。分别注入加热融化的培养基20ml于平皿中作为底层,使其在皿底内均匀摊布,凝固后,另取培养基适量加热融化后,分别在每皿中加入5ml菌悬液,摇匀,使其在底层上均匀摊布,作为菌层。冷却后,在平皿中等距离均匀放入已消毒的不锈钢杯6个。第一个钢杯加入0.1-0.3mg/ml浓度的待测化合物溶液0.1ml,其余钢杯采用二倍稀释法加入样品液,37℃培养,观察抑菌圈大小。抑菌圈10mm以上的作为最小抑菌浓度(minimal inhibitory concentration,MIC)。细菌菌株来源于昆明医学院第一附属医院,此试验重复四次,取平均值,结果如表1。The antibacterial activity was detected by the cup and saucer method, and the medium was ordinary agar medium. Inject 20ml of heated and melted medium into the plate as the bottom layer, spread it evenly in the bottom of the plate, after solidification, take another appropriate amount of medium and heat and melt, add 5ml of bacterial suspension to each plate, shake well, Spread it evenly on the bottom layer as a bacterial layer. After cooling, put 6 sterilized stainless steel cups evenly in the plate at equal distances. Add 0.1ml of the test compound solution at a concentration of 0.1-0.3mg/ml to the first steel cup, add the sample solution to the other steel cups by doubling dilution method, incubate at 37°C, and observe the size of the inhibition zone. The bacteriostatic zone above 10mm was regarded as the minimum inhibitory concentration (minimal inhibitory concentration, MIC). The bacterial strains were obtained from the First Affiliated Hospital of Kunming Medical College. The test was repeated four times and the average value was taken. The results are shown in Table 1.
表1,棕点湍蛙活性多肽抑制细菌生长的作用:
由表1可见,合成的棕点湍蛙活性多肽具有显著的抑制细菌生长的作用。It can be seen from Table 1 that the synthesized active polypeptide of the brown-spotted frog has a significant effect of inhibiting the growth of bacteria.
棕点湍蛙活性多肽抑制真菌生长的作用:The effect of the active polypeptide of the brown-spotted frog on inhibiting the growth of fungi:
抗真菌活性检测采用杯碟法,培养基为改良沙保氏(Sabousand)培养基。分别注入加热溶化的培养基20ml于平皿中作为底层,使其在皿底均匀摊布,凝固后另取培养基适量加热溶化,分别向每皿中加入5ml菌悬液,摇匀,使其在底层上均匀摊布,作为菌层。冷却后,在平皿中等距离放入已消毒的不锈钢杯5个。第一个钢杯加入0.3mg/ml浓度的待测化合物溶液0.1ml,其余钢杯采用二倍稀释法加入样品液,37℃培养,24h-48h后测量抑菌圈大小。抑菌圈10mm以上作为最小抑菌浓度(minimal inhibitory concentration,MIC)。细菌菌株来源于云南大学微生物研究所,此实验做三个平行,取几何平均值,结果如表2。The antifungal activity was detected by the cup and saucer method, and the medium was modified Sabousand medium. Inject 20ml of heated and melted medium into the plate as the bottom layer, and spread it evenly on the bottom of the plate. After solidification, take another appropriate amount of medium and heat it to dissolve. Add 5ml of bacterial suspension to each plate, shake well, and make it Spread evenly on the bottom layer as a bacterial layer. After cooling, put 5 sterilized stainless steel cups at equal distances in the plate. Add 0.1ml of the test compound solution at a concentration of 0.3mg/ml to the first steel cup, add the sample solution to the other steel cups by doubling dilution method, incubate at 37°C, and measure the size of the inhibition zone after 24h-48h. The minimum inhibitory concentration (MIC) was defined as the zone of inhibition above 10 mm. The bacterial strains come from the Institute of Microbiology, Yunnan University. This experiment was performed in three parallels, and the geometric mean value was taken. The results are shown in Table 2.
表2.棕点湍蛙活性多肽抑制真菌生长的作用:
由表2可见,合成的棕点湍蛙活性多肽具有显著的抑制真菌生长作用。It can be seen from Table 2 that the synthesized active polypeptide of the brown-spotted frog has a significant effect of inhibiting the growth of fungi.
棕点湍蛙活性多肽及其基因和在制药中的应用-序列生成表
SEQUENCE LISTINGSEQUENCE LISTING
<110>南京农业大学<110> Nanjing Agricultural University
<120>棕点湍蛙活性多肽及其基因和在制药中的应用<120> Brown-spotted frog active polypeptide and its gene and its application in pharmaceuticals
<130>1<130>1
<160>2<160>2
<170>PatentIn version 3.3<170>PatentIn version 3.3
<210>1<210>1
<211>448<211>448
<212>DNA<212>DNA
<213>棕点湍蛙(Amolops loloensis)<213>Amolops loloensis
<400>1<400>1
taagcagtgg tatcaacgca gagtggccat tacggccggg ggagacctcc actgaagtct 60taagcagtgg tatcaacgca gagtggccat tacggccggg ggagacctcc actgaagtct 60
tccagctctc tacattctca gcaccaactg aactacccga acccaaagat gttcaccttg 120tccagctctc tacattctca gcaccaactg aactacccga acccaaagat gttcaccttg 120
aagaaatccc tgttactcct tttcttcctt gggaccatca acttatctct ctgcgagcaa 180aagaaatccc tgttactcct tttcttcctt gggaccatca acttatctct ctgcgagcaa 180
gagagagatg ccgatgagga agaaagaaga gatgatgatg aaatggatgt tgaagtggaa 240gagagagatg ccgatgagga agaaagaaga gatgatgatg aaatggatgt tgaagtggaa 240
aaacgatttt taccacttgc ggtcagtctg gccgctaatt tcttgcccaa actattttgt 300aaacgatttt taccacttgc ggtcagtctg gccgctaatt tcttgcccaa actattttgt 300
aaaataacca aaaaatgttg aaactctgaa aatggaattg gaaatcatct gatgttgaat 360aaaataacca aaaaatgttg aaactctgaa aatggaattg gaaatcatct gatgttgaat 360
atcatttagc taaatgcaca tcagatgtct tataaaaaaa taaagatatc tcaaacatca 420atcatttagc taaatgcaca tcagatgtct tataaaaaaa taaagatatc tcaaacatca 420
aaaaaaaaaa aaaaaaaaaa aaaaaaaa 448aaaaaaaaaa aaaaaaaaaa aaaaaaaa 448
<210>2<210>2
<211>24<211>24
<212>PRT<212>PRT
<213>棕点湍蛙(Amolops loloensis)<213>Amolops loloensis
<220><220>
<221>AMIDATION<221> AMIDATION
<222>(24)<222>(24)
<400>2<400>2
Phe Leu Pro Leu Ala Val Ser Leu Ala Ala Asn Phe Leu Pro Lys LeuPhe Leu Pro Leu Ala Val Ser Leu Ala Ala Asn Phe Leu Pro Lys Leu
1 5 10 151 5 10 15
Phe Cys Lys Ile Thr Lys Lys Cys-AMIDATIONPhe Cys Lys Ile Thr Lys Lys Cys-AMIDATION
2020
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大蹼铃蟾皮肤分泌液中抗菌活性肽的分离纯化及其性质 赖,仞等.动物学研究,第19卷第4期 1998 * |
林蛙皮抗菌肽的提取及其某些特性的测定 袁德云等.吉林农业大学学报,第23卷第2期 2001 * |
蛙类皮肤及其分泌物中生物活性肽的研究进展 姜丽丽等.中国生化药物杂志,第26卷第4期 2005 * |
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