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AU2002241501A1 - Methods and computer software products for selecting nucleic acid probes - Google Patents

Methods and computer software products for selecting nucleic acid probes

Info

Publication number
AU2002241501A1
AU2002241501A1 AU2002241501A AU4150102A AU2002241501A1 AU 2002241501 A1 AU2002241501 A1 AU 2002241501A1 AU 2002241501 A AU2002241501 A AU 2002241501A AU 4150102 A AU4150102 A AU 4150102A AU 2002241501 A1 AU2002241501 A1 AU 2002241501A1
Authority
AU
Australia
Prior art keywords
methods
nucleic acid
computer software
acid probes
software products
Prior art date
Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
Abandoned
Application number
AU2002241501A
Inventor
Rui Mei
Teresa Webster
Current Assignee (The listed assignees may be inaccurate. Google has not performed a legal analysis and makes no representation or warranty as to the accuracy of the list.)
Affymetrix Inc
Original Assignee
Affymetrix Inc
Priority date (The priority date is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the date listed.)
Filing date
Publication date
Application filed by Affymetrix Inc filed Critical Affymetrix Inc
Publication of AU2002241501A1 publication Critical patent/AU2002241501A1/en
Abandoned legal-status Critical Current

Links

Classifications

    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression
    • G16B25/30—Microarray design
    • C—CHEMISTRY; METALLURGY
    • C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
    • C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
    • C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
    • C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
    • C12Q1/6813—Hybridisation assays
    • G—PHYSICS
    • G16—INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR SPECIFIC APPLICATION FIELDS
    • G16B—BIOINFORMATICS, i.e. INFORMATION AND COMMUNICATION TECHNOLOGY [ICT] SPECIALLY ADAPTED FOR GENETIC OR PROTEIN-RELATED DATA PROCESSING IN COMPUTATIONAL MOLECULAR BIOLOGY
    • G16B25/00—ICT specially adapted for hybridisation; ICT specially adapted for gene or protein expression

Landscapes

  • Life Sciences & Earth Sciences (AREA)
  • Health & Medical Sciences (AREA)
  • Physics & Mathematics (AREA)
  • Engineering & Computer Science (AREA)
  • Chemical & Material Sciences (AREA)
  • Biophysics (AREA)
  • Genetics & Genomics (AREA)
  • Molecular Biology (AREA)
  • Bioinformatics & Cheminformatics (AREA)
  • Organic Chemistry (AREA)
  • Biotechnology (AREA)
  • General Health & Medical Sciences (AREA)
  • Medical Informatics (AREA)
  • Bioinformatics & Computational Biology (AREA)
  • Theoretical Computer Science (AREA)
  • Evolutionary Biology (AREA)
  • Spectroscopy & Molecular Physics (AREA)
  • Proteomics, Peptides & Aminoacids (AREA)
  • Zoology (AREA)
  • Wood Science & Technology (AREA)
  • Analytical Chemistry (AREA)
  • Microbiology (AREA)
  • Immunology (AREA)
  • Biochemistry (AREA)
  • General Engineering & Computer Science (AREA)
  • Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
  • Apparatus Associated With Microorganisms And Enzymes (AREA)
AU2002241501A 2000-11-21 2001-11-21 Methods and computer software products for selecting nucleic acid probes Abandoned AU2002241501A1 (en)

Applications Claiming Priority (3)

Application Number Priority Date Filing Date Title
US71829500A 2000-11-21 2000-11-21
US09/718,295 2000-11-21
PCT/US2001/043742 WO2002042485A2 (en) 2000-11-21 2001-11-21 Methods and computer software products for selecting nucleic acid probes

Publications (1)

Publication Number Publication Date
AU2002241501A1 true AU2002241501A1 (en) 2002-06-03

Family

ID=24885570

Family Applications (1)

Application Number Title Priority Date Filing Date
AU2002241501A Abandoned AU2002241501A1 (en) 2000-11-21 2001-11-21 Methods and computer software products for selecting nucleic acid probes

Country Status (3)

Country Link
US (1) US20050158790A1 (en)
AU (1) AU2002241501A1 (en)
WO (1) WO2002042485A2 (en)

Families Citing this family (5)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US7858301B2 (en) * 2003-05-07 2010-12-28 Bioarray Solutions, Ltd. Method of probe design for nucleic acid analysis by multiplexed hybridization
ES2388541T3 (en) 2005-02-04 2012-10-16 Roche Nimblegen, Inc. Optimized probe selection method
US20070100563A1 (en) * 2005-10-27 2007-05-03 Webb Peter G Probe selection methods, computer program products, systems and arrays
US9995766B2 (en) * 2009-06-16 2018-06-12 The Regents Of The University Of California Methods and systems for measuring a property of a macromolecule
US20160340720A1 (en) * 2014-02-13 2016-11-24 Cellular Research Methods and compositions for array-based counting

Family Cites Families (9)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
US5525464A (en) * 1987-04-01 1996-06-11 Hyseq, Inc. Method of sequencing by hybridization of oligonucleotide probes
US6027884A (en) * 1993-06-17 2000-02-22 The Research Foundation Of The State University Of New York Thermodynamics, design, and use of nucleic acid sequences
US6001562A (en) * 1995-05-10 1999-12-14 The University Of Chicago DNA sequence similarity recognition by hybridization to short oligomers
US5733729A (en) * 1995-09-14 1998-03-31 Affymetrix, Inc. Computer-aided probability base calling for arrays of nucleic acid probes on chips
US5972693A (en) * 1995-10-24 1999-10-26 Curagen Corporation Apparatus for identifying, classifying, or quantifying DNA sequences in a sample without sequencing
US6300063B1 (en) * 1995-11-29 2001-10-09 Affymetrix, Inc. Polymorphism detection
AU2189397A (en) * 1996-02-08 1997-08-28 Affymetrix, Inc. Chip-based speciation and phenotypic characterization of microorganisms
US6303301B1 (en) * 1997-01-13 2001-10-16 Affymetrix, Inc. Expression monitoring for gene function identification
US6171794B1 (en) * 1998-07-13 2001-01-09 Rosetta Inpharmatics, Inc. Methods for determining cross-hybridization

Also Published As

Publication number Publication date
US20050158790A1 (en) 2005-07-21
WO2002042485A9 (en) 2003-05-01
WO2002042485A3 (en) 2003-02-06
WO2002042485A2 (en) 2002-05-30

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