ATE295428T1 - Verlängerung einer pna-dna chimäre an ihrem 3' ende mittels einer polymerase - Google Patents
Verlängerung einer pna-dna chimäre an ihrem 3' ende mittels einer polymeraseInfo
- Publication number
- ATE295428T1 ATE295428T1 AT00953941T AT00953941T ATE295428T1 AT E295428 T1 ATE295428 T1 AT E295428T1 AT 00953941 T AT00953941 T AT 00953941T AT 00953941 T AT00953941 T AT 00953941T AT E295428 T1 ATE295428 T1 AT E295428T1
- Authority
- AT
- Austria
- Prior art keywords
- chimera
- pna
- primer extension
- dna
- nucleotide
- Prior art date
Links
- 239000002773 nucleotide Substances 0.000 abstract 4
- 125000003729 nucleotide group Chemical group 0.000 abstract 4
- 238000000034 method Methods 0.000 abstract 2
- 238000001712 DNA sequencing Methods 0.000 abstract 1
- 230000003321 amplification Effects 0.000 abstract 1
- 238000004458 analytical method Methods 0.000 abstract 1
- 239000003153 chemical reaction reagent Substances 0.000 abstract 1
- 210000000349 chromosome Anatomy 0.000 abstract 1
- 238000001514 detection method Methods 0.000 abstract 1
- 239000007850 fluorescent dye Substances 0.000 abstract 1
- 239000012634 fragment Substances 0.000 abstract 1
- 125000002887 hydroxy group Chemical group [H]O* 0.000 abstract 1
- 238000002372 labelling Methods 0.000 abstract 1
- 239000000178 monomer Substances 0.000 abstract 1
- 238000003199 nucleic acid amplification method Methods 0.000 abstract 1
- 150000007523 nucleic acids Chemical class 0.000 abstract 1
- 102000039446 nucleic acids Human genes 0.000 abstract 1
- 108020004707 nucleic acids Proteins 0.000 abstract 1
- 238000010839 reverse transcription Methods 0.000 abstract 1
- 238000012163 sequencing technique Methods 0.000 abstract 1
- 239000001226 triphosphate Substances 0.000 abstract 1
Classifications
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/6858—Allele-specific amplification
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6844—Nucleic acid amplification reactions
- C12Q1/6853—Nucleic acid amplification reactions using modified primers or templates
-
- C—CHEMISTRY; METALLURGY
- C12—BIOCHEMISTRY; BEER; SPIRITS; WINE; VINEGAR; MICROBIOLOGY; ENZYMOLOGY; MUTATION OR GENETIC ENGINEERING
- C12Q—MEASURING OR TESTING PROCESSES INVOLVING ENZYMES, NUCLEIC ACIDS OR MICROORGANISMS; COMPOSITIONS OR TEST PAPERS THEREFOR; PROCESSES OF PREPARING SUCH COMPOSITIONS; CONDITION-RESPONSIVE CONTROL IN MICROBIOLOGICAL OR ENZYMOLOGICAL PROCESSES
- C12Q1/00—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions
- C12Q1/68—Measuring or testing processes involving enzymes, nucleic acids or microorganisms; Compositions therefor; Processes of preparing such compositions involving nucleic acids
- C12Q1/6869—Methods for sequencing
Landscapes
- Chemical & Material Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Organic Chemistry (AREA)
- Proteomics, Peptides & Aminoacids (AREA)
- Engineering & Computer Science (AREA)
- Zoology (AREA)
- Wood Science & Technology (AREA)
- Health & Medical Sciences (AREA)
- Molecular Biology (AREA)
- Bioinformatics & Cheminformatics (AREA)
- Immunology (AREA)
- Microbiology (AREA)
- Biophysics (AREA)
- Analytical Chemistry (AREA)
- Physics & Mathematics (AREA)
- Genetics & Genomics (AREA)
- Biochemistry (AREA)
- Biotechnology (AREA)
- General Engineering & Computer Science (AREA)
- General Health & Medical Sciences (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Measuring Or Testing Involving Enzymes Or Micro-Organisms (AREA)
- Preparation Of Compounds By Using Micro-Organisms (AREA)
- Investigating Or Analysing Biological Materials (AREA)
- Investigating Or Analysing Materials By The Use Of Chemical Reactions (AREA)
Applications Claiming Priority (2)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US09/373,845 US6316230B1 (en) | 1999-08-13 | 1999-08-13 | Polymerase extension at 3′ terminus of PNA-DNA chimera |
| PCT/US2000/021880 WO2001012852A2 (en) | 1999-08-13 | 2000-08-09 | Polymerase extension at 3' terminus of pna-dna chimera |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| ATE295428T1 true ATE295428T1 (de) | 2005-05-15 |
Family
ID=23474127
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| AT00953941T ATE295428T1 (de) | 1999-08-13 | 2000-08-09 | Verlängerung einer pna-dna chimäre an ihrem 3' ende mittels einer polymerase |
Country Status (8)
| Country | Link |
|---|---|
| US (3) | US6316230B1 (de) |
| EP (1) | EP1198594B1 (de) |
| JP (1) | JP2003507024A (de) |
| AT (1) | ATE295428T1 (de) |
| AU (1) | AU6630200A (de) |
| CA (1) | CA2381098A1 (de) |
| DE (1) | DE60020124T2 (de) |
| WO (1) | WO2001012852A2 (de) |
Families Citing this family (65)
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| JP2003510017A (ja) * | 1999-06-22 | 2003-03-18 | インビトロジェン コーポレイション | 核酸の検出および識別のために改良されたプライマーおよび方法 |
| US6660845B1 (en) * | 1999-11-23 | 2003-12-09 | Epoch Biosciences, Inc. | Non-aggregating, non-quenching oligomers comprising nucleotide analogues; methods of synthesis and use thereof |
| US7205129B1 (en) * | 2000-02-28 | 2007-04-17 | Qiagen Gmbh | Method for reducing artifacts in nucleic acid amplification |
| US20060057565A1 (en) * | 2000-09-11 | 2006-03-16 | Jingyue Ju | Combinatorial fluorescence energy transfer tags and uses thereof |
| US6627748B1 (en) | 2000-09-11 | 2003-09-30 | The Trustees Of Columbia University In The City Of New York | Combinatorial fluorescence energy transfer tags and their applications for multiplex genetic analyses |
| WO2002029003A2 (en) | 2000-10-06 | 2002-04-11 | The Trustees Of Columbia University In The City Of New York | Massive parallel method for decoding dna and rna |
| US9708358B2 (en) | 2000-10-06 | 2017-07-18 | The Trustees Of Columbia University In The City Of New York | Massive parallel method for decoding DNA and RNA |
| US20020161219A1 (en) * | 2001-02-21 | 2002-10-31 | Anastassia Kanavarioti | Non-enzymatic large scale synthesis of RNA |
| EP1412517B1 (de) * | 2001-03-09 | 2006-11-29 | Boston Probes, Inc. | Kombinationsoligomere betreffende verfahren, kits und zusammensetzungen |
| US20030027140A1 (en) * | 2001-03-30 | 2003-02-06 | Jingyue Ju | High-fidelity DNA sequencing using solid phase capturable dideoxynucleotides and mass spectrometry |
| US20030165859A1 (en) * | 2001-10-23 | 2003-09-04 | Invitrogen Corporation | Primers and methods for the detection and discrimination of nucleic acids |
| AU2002343573A1 (en) * | 2001-10-24 | 2003-05-06 | Singulex, Inc. | Methods for detecting genetic haplotypes by interaction with probes |
| JP2003144152A (ja) * | 2001-11-09 | 2003-05-20 | Fuji Photo Film Co Ltd | ターゲット核酸断片の検出方法及びターゲット核酸断片の検出キット |
| US6946245B2 (en) | 2001-12-04 | 2005-09-20 | Quest Diagnostics Investments Incorporated | Oligonucleotides and methods for detecting hepatitis C viral nucleic acids |
| US6686162B2 (en) | 2001-12-04 | 2004-02-03 | Quest Diagnostics Investments, Incorporated | Oligonucleotides and methods for detecting Borrelia burgdorferi |
| US20040072195A1 (en) * | 2002-01-25 | 2004-04-15 | Hunkapiller Michael W. | Single-tube, ready-to-use assay kits, and methods using same |
| JP2005516300A (ja) * | 2002-01-25 | 2005-06-02 | アプレラ コーポレイション | 製品およびサービスに対する注文を発注し、受理し、および充足する方法 |
| US20090239233A1 (en) * | 2002-01-25 | 2009-09-24 | Applera Corporation | Single-tube, ready-to-use assay kits, and methods using same |
| US20030228596A1 (en) * | 2002-03-14 | 2003-12-11 | Qiang Liu | Template-driven nucleic acid amplifications |
| US20030211483A1 (en) * | 2002-05-09 | 2003-11-13 | Schroeder Benjamin G. | Methods for the enrichment of low-abundance polynucleotides |
| DE60334132D1 (de) * | 2002-05-31 | 2010-10-21 | Nat Inst Of Advanced Ind Scien | Neues verfahren zum testen von nukleinsäure unter verwendung von markiertem nukleotid |
| US7074597B2 (en) * | 2002-07-12 | 2006-07-11 | The Trustees Of Columbia University In The City Of New York | Multiplex genotyping using solid phase capturable dideoxynucleotides and mass spectrometry |
| US20040067492A1 (en) * | 2002-10-04 | 2004-04-08 | Allan Peng | Reverse transcription on microarrays |
| US20040166514A1 (en) * | 2002-11-19 | 2004-08-26 | Singulex, Inc. | Detection of target molecules through interaction with probes |
| US20050032081A1 (en) * | 2002-12-13 | 2005-02-10 | Jingyue Ju | Biomolecular coupling methods using 1,3-dipolar cycloaddition chemistry |
| EP1606419A1 (de) | 2003-03-18 | 2005-12-21 | Quantum Genetics Ireland Limited | Systeme und methoden zur erhohung der milchproduktion in tieren |
| CA2528958A1 (en) * | 2003-06-12 | 2004-12-23 | Applera Corporation | Combinatorial nucleobase oligomers comprising universal base analogues and methods for making and using same |
| US20090088982A1 (en) * | 2003-07-31 | 2009-04-02 | Fukushima Noelle H | Co-detection of single polypeptide and polynucleotide molecules |
| US20050112591A1 (en) * | 2003-11-25 | 2005-05-26 | Applera Corporation | Novel method for isolating single stranded product |
| US20050153300A1 (en) * | 2004-01-09 | 2005-07-14 | Quest Diagnostics Incorporated | Methods and compositions for the detection of mucolipidosis IV mutations |
| JP2007525217A (ja) | 2004-02-19 | 2007-09-06 | ザ ガバナーズ オブ ザ ユニバーシティー オブ アルバータ | レプチンプロモーター多型及びその使用 |
| US20080176220A1 (en) * | 2004-02-26 | 2008-07-24 | Thomsen Bioscience | Method, Kit and System for Enhanced Nested Pcr |
| CA2557818A1 (en) * | 2004-03-03 | 2005-09-15 | The Trustees Of Columbia University In The City Of New York | Photocleavable fluorescent nucleotides for dna sequencing on chip constructed by site-specific coupling chemistry |
| US7408051B2 (en) | 2004-04-14 | 2008-08-05 | Applera Corporation | Modified oligonucleotides and applications thereof |
| US7517978B1 (en) | 2004-04-14 | 2009-04-14 | Applied Biosystems, Llc | Modified oligonucleotides and applications thereof |
| WO2006073436A2 (en) * | 2004-04-29 | 2006-07-13 | The Trustees Of Columbia University In The City Of New York | Mass tag pcr for multiplex diagnostics |
| US7879569B2 (en) | 2004-11-09 | 2011-02-01 | The Trustees Of The University Of Pennsylvania | Methods for diagnosis of myelodysplastic syndromes (MDS) |
| US7700287B2 (en) * | 2005-01-28 | 2010-04-20 | Life Technologies Corporation | Compositions and methods for terminating a sequencing reaction at a specific location in a target DNA template |
| WO2006094200A2 (en) * | 2005-03-03 | 2006-09-08 | The Trustees Of Boston College | Method of obtaining a desired localization for cellular imaging with the use of peptidoconjugates |
| JP2008535518A (ja) * | 2005-04-14 | 2008-09-04 | アプレラ コーポレイション | プソイドイソシトシン核酸塩基誘導体を含む３’改変オリゴヌクレオチド、およびプライマーまたはプローブとしてのその適用 |
| WO2006119419A2 (en) * | 2005-05-03 | 2006-11-09 | Geunsook Jeon | Materials and kits for use in hot-start pcr, and methods of amplifying nucleic acids in a polymerase chain reaction |
| US9169510B2 (en) * | 2005-06-21 | 2015-10-27 | The Trustees Of Columbia University In The City Of New York | Pyrosequencing methods and related compositions |
| CA2630544A1 (en) * | 2005-11-21 | 2007-05-31 | The Trustees Of Columbia University In The City Of New York | Multiplex digital immuno-sensing using a library of photocleavable mass tags |
| US9677123B2 (en) | 2006-03-15 | 2017-06-13 | Siemens Healthcare Diagnostics Inc. | Degenerate nucleobase analogs |
| US8895711B2 (en) * | 2006-04-18 | 2014-11-25 | The Trustees Of The University Of Pennsylvania | Mutated ACVR1 for diagnosis and treatment of Fibrodyplasia Ossificans Progressiva (FOP) |
| US8859752B2 (en) | 2006-04-18 | 2014-10-14 | The Trustees Of The University Of Pennsylvania | SIRNA-based therapy of Fibrodyplasia Ossificans Progressiva (FOP) |
| US20080131880A1 (en) * | 2006-11-22 | 2008-06-05 | Bortolin Laura T | PNA-DNA oligomers and methods of use thereof |
| WO2008069973A2 (en) | 2006-12-01 | 2008-06-12 | The Trustees Of Columbia University In The City Of New York | Four-color dna sequencing by synthesis using cleavable fluorescent nucleotide reversible terminators |
| EP2725107B1 (de) | 2007-10-19 | 2018-08-29 | The Trustees of Columbia University in the City of New York | DNA-Sequenzierung mit nichtfluoreszierenden, reversiblen Nukleotidterminatoren und spaltbaren, fluoreszierenden ddNTPs und Nukleinsäuren die Inosine mit reversiblen Terminatorgruppe |
| EP2207900B1 (de) | 2007-10-19 | 2015-04-29 | The Trustees of Columbia University in the City of New York | Konstruktion und synthese spaltbarer fluoreszenznukleotide als reversible terminatoren für die dna-sequenzierung mittels synthese |
| CA2679750A1 (en) * | 2008-09-23 | 2010-03-23 | Nexus Dx, Inc. | Methods for detecting nucleic acids in a sample |
| WO2010111690A2 (en) | 2009-03-27 | 2010-09-30 | Life Technologies Corporation | Polymerase compositions and methods |
| WO2011112512A1 (en) * | 2010-03-09 | 2011-09-15 | Brookhaven Science Associates | Arbitrary assembly of nano-objects into designed 1d and 2d arrays |
| US9777332B2 (en) | 2011-03-31 | 2017-10-03 | St. Jude Children's Research Hospital | Methods and compositions for identifying minimal residual disease in acute lymphoblastic leukemia |
| WO2012162429A2 (en) | 2011-05-23 | 2012-11-29 | The Trustees Of Columbia University In The City Of New York | Dna sequencing by synthesis using raman and infrared spectroscopy detection |
| US10006909B2 (en) | 2012-09-28 | 2018-06-26 | Vibrant Holdings, Llc | Methods, systems, and arrays for biomolecular analysis |
| WO2014093291A1 (en) | 2012-12-10 | 2014-06-19 | Advandx, Inc. | Use of probes for mass spectrometric identification of microorganisms or cells and associated conditions of interest |
| US9540699B2 (en) | 2013-03-13 | 2017-01-10 | William Beaumont Hospital | Methods of diagnosing increased risk of developing MRSA |
| US10648026B2 (en) | 2013-03-15 | 2020-05-12 | The Trustees Of Columbia University In The City Of New York | Raman cluster tagged molecules for biological imaging |
| US9909167B2 (en) | 2014-06-23 | 2018-03-06 | The Board Of Trustees Of The Leland Stanford Junior University | On-slide staining by primer extension |
| CN116064727A (zh) | 2016-07-27 | 2023-05-05 | 斯坦福大学托管董事会 | 高度复用荧光成像 |
| WO2018218250A2 (en) | 2017-05-26 | 2018-11-29 | Vibrant Holdings, Llc | Photoactive compounds and methods for biomolecule detection and sequencing |
| BR112020021218A2 (pt) | 2018-04-18 | 2021-03-02 | St. Jude Children's Research Hospital | ensaios de genotipagem para identificar mutações em xaf1 |
| JP7475445B2 (ja) * | 2019-11-19 | 2024-04-26 | エスエフシー カンパニー リミテッド | 消光子およびこの用途 |
| JP7344786B2 (ja) * | 2019-12-19 | 2023-09-14 | 株式会社日立製作所 | 溶液中の任意のｄｎａ配列を同定する方法 |
Family Cites Families (10)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| CA1340806C (en) * | 1986-07-02 | 1999-11-02 | James Merrill Prober | Method, system and reagents for dna sequencing |
| US5652099A (en) * | 1992-02-12 | 1997-07-29 | Conrad; Michael J. | Probes comprising fluorescent nucleosides and uses thereof |
| EP0607151B1 (de) | 1992-06-17 | 2002-11-13 | City Of Hope | Verfahren zum nachweis und unterscheiden von nukleinsäuresequenzen |
| DE69425379T2 (de) | 1993-09-21 | 2000-11-30 | Amersham Pharmacia Biotech Uk Ltd., Little Chalfont | Elongation, amplifikation und sequenzierung unter verwendung eines chimären oligonucleotids |
| DE4408528A1 (de) | 1994-03-14 | 1995-09-28 | Hoechst Ag | Peptid-Oligonucleotid-Derivate, deren Herstellung und Verwendung |
| WO1996040709A1 (en) * | 1995-06-07 | 1996-12-19 | Perseptive Biosystems, Inc. | Pna-dna chimeras and pna synthons for their preparation |
| JP4294732B2 (ja) | 1996-02-09 | 2009-07-15 | コーネル・リサーチ・ファンデーション・インコーポレイテッド | アドレス可能アレイでのリガーゼ検出反応を用いた核酸配列の相違の検出 |
| US5847162A (en) | 1996-06-27 | 1998-12-08 | The Perkin Elmer Corporation | 4, 7-Dichlororhodamine dyes |
| DE19637339A1 (de) * | 1996-09-13 | 1998-03-19 | Hoechst Ag | Verfahren zur Amplifikation von Nukleinsäuren |
| WO1999034014A2 (en) | 1997-12-23 | 1999-07-08 | Roche Diagnostics Gmbh | A method for the determination of a nucleic acid |
-
1999
- 1999-08-13 US US09/373,845 patent/US6316230B1/en not_active Expired - Lifetime
-
2000
- 2000-08-09 AU AU66302/00A patent/AU6630200A/en not_active Abandoned
- 2000-08-09 JP JP2001516939A patent/JP2003507024A/ja active Pending
- 2000-08-09 DE DE60020124T patent/DE60020124T2/de not_active Expired - Lifetime
- 2000-08-09 WO PCT/US2000/021880 patent/WO2001012852A2/en active IP Right Grant
- 2000-08-09 EP EP00953941A patent/EP1198594B1/de not_active Expired - Lifetime
- 2000-08-09 AT AT00953941T patent/ATE295428T1/de not_active IP Right Cessation
- 2000-08-09 CA CA002381098A patent/CA2381098A1/en not_active Abandoned
-
2001
- 2001-10-24 US US10/045,621 patent/US20030082558A1/en not_active Abandoned
-
2003
- 2003-07-11 US US10/618,077 patent/US20050186572A1/en not_active Abandoned
Also Published As
| Publication number | Publication date |
|---|---|
| EP1198594B1 (de) | 2005-05-11 |
| US6316230B1 (en) | 2001-11-13 |
| WO2001012852A2 (en) | 2001-02-22 |
| DE60020124T2 (de) | 2006-01-19 |
| EP1198594A2 (de) | 2002-04-24 |
| CA2381098A1 (en) | 2001-02-22 |
| AU6630200A (en) | 2001-03-13 |
| US20030082558A1 (en) | 2003-05-01 |
| US20050186572A1 (en) | 2005-08-25 |
| DE60020124D1 (de) | 2005-06-16 |
| JP2003507024A (ja) | 2003-02-25 |
| WO2001012852A3 (en) | 2001-06-21 |
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Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| RER | Ceased as to paragraph 5 lit. 3 law introducing patent treaties |