Open-source toolbox
MuscleMap
Whole-body muscle segmentation and quantitative analysis for large-scale imaging studies.
Built for researchers, clinicians, and data scientists working with MRI and CT.
Features
Whole-body muscle segmentation
Designed for whole-body and clinical imaging with consistent labelling across muscles and bones, enabling large-scale, multi-region analyses.
Automated muscle quantification
Extract muscle-specific metrics such as volumes or intramuscular fat percentage across multiple MRI contrasts and CT.
Three-dimensional spatial parametric mapping
Visualize and calculate the 3D spatial distribution of intramuscular fat in a standardized muscle template.
3D Slicer extension
Includes a 3D Slicer extension to make MuscleMap easy to run and inspect individual cases for quality control.
