(Q33773381)

29 July 2017

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title

Regulatory roles of natural antisense transcripts (English)

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29 July 2017

Mohammad Ali Faghihi

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29 July 2017

Claes Wahlestedt

series ordinal

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29 July 2017

publication date

29 July 2009

1 reference

Nature Reviews Molecular Cell Biology

29 July 2017

published in

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29 July 2017

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29 July 2017

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29 July 2017

page(s)

637-643

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Direct detection of abortive RNA transcripts in vivo

29 July 2017

cites work

1 reference

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Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

4 July 2018

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Divergent transcription from active promoters

4 July 2018

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The antisense transcriptomes of human cells

4 July 2018

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RNA exosome depletion reveals transcription upstream of active human promoters

4 July 2018

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Bidirectional transcription directs both transcriptional gene activation and suppression in human cells

4 July 2018

1 reference

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Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation

4 July 2018

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PU.1 expression is modulated by the balance of functional sense and antisense RNAs regulated by a shared cis-regulatory element.

4 July 2018

1 reference

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Antisense transcripts are targets for activating small RNAs

4 July 2018

1 reference

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Expression of a noncoding RNA is elevated in Alzheimer's disease and drives rapid feed-forward regulation of beta-secretase

4 July 2018

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An endogenous small interfering RNA pathway in Drosophila

4 July 2018

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Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes

4 July 2018

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Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes

4 July 2018

1 reference

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Hidden layers of human small RNAs

4 July 2018

1 reference

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Mapping of small RNAs in the human ENCODE regions

4 July 2018

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Does antisense make sense of AID targeting?

4 July 2018

1 reference

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Kcnq1ot1/Lit1 noncoding RNA mediates transcriptional silencing by targeting to the perinucleolar region

4 July 2018

1 reference

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Antisense transcripts from immunoglobulin heavy-chain locus V(D)J and switch regions

4 July 2018

1 reference

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Genome-wide analysis of antisense transcription with Affymetrix exon array

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis.

4 July 2018

1 reference

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Epigenetic silencing of tumour suppressor gene p15 by its antisense RNA

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Natural antisense transcript stabilizes inducible nitric oxide synthase messenger RNA in rat hepatocytes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Biogenesis and germline functions of piRNAs

4 July 2018

1 reference

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A novel class of bacteria-induced small RNAs in Arabidopsis.

4 July 2018

1 reference

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The Piwi-piRNA pathway provides an adaptive defense in the transposon arms race

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

A natural antisense transcript of the Petunia hybrida Sho gene suggests a role for an antisense mechanism in cytokinin regulation

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Single-stranded DNA structure and positional context of the target cytidine determine the enzymatic efficiency of AID.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

A-to-I editing challenger or ally to the microRNA process

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Antisense intergenic transcription precedes Igh D-to-J recombination and is controlled by the intronic enhancer Emu.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

RNA maps reveal new RNA classes and a possible function for pervasive transcription

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Transcriptional interferences in cis natural antisense transcripts of humans and mice

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Localizing hotspots of antisense transcription

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Activating gene expression in mammalian cells with promoter-targeted duplex RNAs

4 July 2018

1 reference

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Detection of chromatin-associated single-stranded DNA in regions targeted for somatic hypermutation.

4 July 2018

1 reference

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Collision events between RNA polymerases in convergent transcription studied by atomic force microscopy

4 July 2018

1 reference

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L1 retrotransposition is suppressed by endogenously encoded small interfering RNAs in human cultured cells

4 July 2018

1 reference

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Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Natural antisense and noncoding RNA transcripts as potential drug targets

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

RNA interference is not involved in natural antisense mediated regulation of gene expression in mammals

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Evidence for a preferential targeting of 3'-UTRs by cis-encoded natural antisense transcripts

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Antisense transcription in the mammalian transcriptome

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Transcriptional interference--a crash course

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Perspective: machines for RNAi

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Prolonged hypoxia differentially regulates hypoxia-inducible factor (HIF)-1alpha and HIF-2alpha expression in lung epithelial cells: implication of natural antisense HIF-1alpha

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Systematic identification of sense-antisense transcripts in mammalian cells

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

RNA editing and regulation of Drosophila 4f-rnp expression by sas-10 antisense readthrough mRNA transcripts

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Transcription of antisense RNA leading to gene silencing and methylation as a novel cause of human genetic disease

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Transcriptional collision between convergent genes in budding yeast.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Natural antisense RNA inhibits the expression of BCMA, a tumour necrosis factor receptor homologue

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

The non-coding Air RNA is required for silencing autosomal imprinted genes

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Expression of the thyroid hormone receptor gene, erbAalpha, in B lymphocytes: alternative mRNA processing is independent of differentiation but correlates with antisense RNA levels.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Functional insights into long antisense noncoding RNA Kcnq1ot1 mediated bidirectional silencing.

4 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Crucial role of antisense transcription across the Xist promoter in Tsix-mediated Xist chromatin modification.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

A large quantity of novel human antisense transcripts detected by LongSAGE.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Non-coding RNA directed DNA demethylation of Sphk1 CpG island.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Antisense intergenic transcription in V(D)J recombination

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

The influence of RNA and DNA template structures during transcript elongation by RNA polymerases.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2850559

Comparative expression analysis uncovers novel features of endogenous antisense transcription

30 October 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNRM2738

Erratum: Two distinct mechanisms generate endogenous siRNAs from bidirectional transcription in Drosophila melanogaster

31 March 2020

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNRM2738

31 March 2020

Identifiers

DOI

10.1038/NRM2738

1 reference

Dimensions Publication ID

29 July 2017

0 references

1 reference

29 July 2017

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