(Q33696412)

24879432

28 July 2017

title

Efficient purging of deleterious mutations in plants with haploid selfing (English)

1 reference

28 July 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24879432%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24879432%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Stuart F McDaniel

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24879432%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Péter Szövényi

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24879432%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Nicolas Devos

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24879432%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

David J Weston

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24879432%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Zsófia Hock

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24879432%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Jonathan A Shaw

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24879432%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Andreas Wagner

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24879432%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

publication date

14 May 2014

1 reference

24879432

Genome Biology and Evolution

28 July 2017

published in

1 reference

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5 June 2020

volume

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5 June 2020

issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24879432%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

page(s)

1238-1252

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24879432%20AND%20SRC:MED&resulttype=core&format=json

Estimating the nucleotide diversity in Ceratodon purpureus (Ditrichaceae) from 218 conserved exon-primed, intron-spanning nuclear loci

5 June 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Why time matters: codon evolution and the temporal dynamics of dN/dS

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Genome-wide transcriptomic analysis of the sporophyte of the moss Physcomitrella patens

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

The Capsella rubella genome and the genomic consequences of rapid mating system evolution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Selection is no more efficient in haploid than in diploid life stages of an angiosperm and a moss

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Evolutionary consequences of self-fertilization in plants

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Ancient evolutionary trade-offs between yeast ploidy states

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Recurrent evolution of dioecy in bryophytes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Significance of population size on the fixation of nonsynonymous mutations in genes under varying levels of selection pressure

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Genomic consequences of transitions from cross- to self-fertilization on the efficacy of selection in three independently derived selfing plants

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive in silico assessment of RNA-seq experiments

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Resolving the ortholog conjecture: orthologs tend to be weakly, but significantly, more similar in function than paralogs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Sex, outcrossing and mating types: unsolved questions in fungi and beyond

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Genome evolution in outcrossing versus selfing versus asexual species

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

The effects of deleterious mutations on evolution at linked sites

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Reduced selective constraint in endosymbionts: elevation in radical amino acid replacements occurs genome-wide

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Cryptic fitness advantage: diploids invade haploid populations despite lacking any apparent advantage as measured by standard fitness assays

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Genomic determinants of protein evolution and polymorphism in Arabidopsis.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Sporophytic inbreeding depression in mosses occurs in a species with separate sexes but not in a species with combined sexes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Haploids adapt faster than diploids across a range of environments

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Generation-biased gene expression in a bryophyte model system

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Peatmoss (Sphagnum) diversification associated with Miocene Northern Hemisphere climatic cooling?

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

The genetics of inbreeding depression

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

TagDust--a program to eliminate artifacts from next generation sequencing data

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

The population genetics of dN/dS

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Natural selection in avian protein-coding genes expressed in brain

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Mating systems and the efficacy of selection at the molecular level

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

An ancient genome duplication contributed to the abundance of metabolic genes in the moss Physcomitrella patens

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

KaKs_Calculator: calculating Ka and Ks through model selection and model averaging

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Comparisons of dN/dS are time dependent for closely related bacterial genomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

CD-Search: protein domain annotations on the fly

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

28 July 2018

GeneWise and Genomewise

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

MUSCLE: multiple sequence alignment with high accuracy and high throughput

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Estimating the distribution of selection coefficients from phylogenetic data with applications to mitochondrial and viral DNA.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Breeding systems and genome evolution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Predicting function: from genes to genomes and back

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

The evolutionary advantage of recombination

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Effects of linkage on rates of molecular evolution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Two types of amino acid substitutions in protein evolution

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Pollen-specific, but not sperm-specific, genes show stronger purifying selection and higher rates of positive selection than sporophytic genes in Capsella grandiflora

28 July 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU099

The mixed mating system of the sea palm kelp Postelsia palmaeformis: few costs to selfing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU099

The effective size of bryophyte populations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU099

The cost of inbreeding in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU099

Genome wide analyses reveal little evidence for adaptive evolution in many plant species.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU099

Full-length transcriptome assembly from RNA-Seq data without a reference genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU099

The nonsynonymous/synonymous substitution rate ratio versus the radical/conservative replacement rate ratio in the evolution of mammalian genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU099

More radical amino acid replacements in primates than in rodents: support for the evolutionary role of effective population size

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU099

Proteinortho: detection of (co-)orthologs in large-scale analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU099

Phylogenetic inference rejects sporophyte based classification of the Funariaceae (Bryophyta): rapid radiation suggests rampant homoplasy in sporophyte evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU099

Ontogenetic complexity of sexual dimorphism and sex-specific selection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU099

CDD: conserved domains and protein three-dimensional structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU099

The speciation history of the Physcomitrium--Physcomitrella species complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU099

An experimental method to facilitate the identification of hybrid sporophytes in the moss Physcomitrella patens using fluorescent tagged lines

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU099

Reduced efficacy of natural selection on codon usage bias in selfing Arabidopsis and Capsella species.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU099

Genetic structure and genealogy in the Sphagnum subsecundum complex (Sphagnaceae: Bryophyta).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU099

Genome-wide evidence for efficient positive and purifying selection in Capsella grandiflora, a plant species with a large effective population size

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU099

Are radical and conservative substitution rates useful statistics in molecular evolution?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU099

Multiple paternity and sporophytic inbreeding depression in a dioicous moss species.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU099

Recent divergence, intercontinental dispersal and shared polymorphism are shaping the genetic structure of amphi-Atlantic peatmoss populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU099

Nonlinear dynamics of nonsynonymous (dN) and synonymous (dS) substitution rates affects inference of selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU099

Factors that contribute to variation in evolutionary rate among Arabidopsis genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU099

Comparative population genomics in Collinsia sister species reveals evidence for reduced effective population size, relaxed selection, and evolution of biased gene conversion with an ongoing mating system shift

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Linkage disequilibrium, gene trees and selfing: an ancestral recombination graph with partial self-fertilization

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4041004

Quantifying the Slightly Deleterious Mutation Model of Molecular Evolution

30 October 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU099

Gametophytic Self-Fertilization in Homosporous Plants: Development, Evaluation, and Application of a Statistical Method for Evaluating its Importance

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FGBE%2FEVU099

Dynamics of inbreeding depression due to deleterious mutations in small populations: mutation parameters and inbreeding rate

21 January 2018

1 reference

12 December 2020

Rates of conservative and radical nonsynonymous nucleotide substitutions in mammalian nuclear genes

1 reference

12 December 2020

Self-fertilization in mosses: a comparison of heterozygote deficiency between species with combined versus separate sexes

1 reference

12 December 2020

The evolution of haploidy and diploidy

1 reference

12 December 2020

GENETIC LOAD AND THE MATING SYSTEM IN HOMOSPOROUS FERNS

1 reference

12 December 2020

POPULATION GENETICS OF INTRAGAMETOPHYTIC SELFING.

1 reference

12 December 2020

THE GENETIC STRUCTURE OF SPOROPHYTIC AND GAMETOPHYTIC POPULATIONS OF THE MOSS, FUNARIA HYGROMETRICA HEDW

1 reference

12 December 2020

Identifiers

DOI

10.1093/GBE/EVU099

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24879432%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24879432%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

24879432

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24879432%20AND%20SRC:MED&resulttype=core&format=json