(Q34474781)

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Genomic consequences of transitions from cross- to self-fertilization on the efficacy of selection in three independently derived selfing plants

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Europe PubMed Central

PubMed publication ID

2 August 2017

Genomic consequences of transitions from cross- to self-fertilization on the efficacy of selection in three independently derived selfing plants (English)

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Spencer Charles Hilton Barrett

3

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Spencer C H Barrett

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

author name string

Rob W Ness

1

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

Mathieu Siol

2

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

language of work or name

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publication date

12 November 2012

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

13

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

611

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

EggLib: processing, analysis and simulation tools for population genetics and genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

Reduced efficacy of natural selection on codon usage bias in selfing Arabidopsis and Capsella species.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

De novo sequence assembly and characterization of the floral transcriptome in cross- and self-fertilizing plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

The population genomics of plant adaptation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

The scale of population structure in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

Mating-system variation, demographic history and patterns of nucleotide diversity in the Tristylous plant Eichhornia paniculata

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

Evolutionary pathways to self-fertilization in a tristylous plant species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

Estimating the rate of adaptive molecular evolution in the presence of slightly deleterious mutations and population size change

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

The Sequence Alignment/Map format and SAMtools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

Recent speciation of Capsella rubella from Capsella grandiflora, associated with loss of self-incompatibility and an extreme bottleneck

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

Recent speciation associated with the evolution of selfing in Capsella.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

Molecular evolution of synonymous codon usage in Populus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

Mapping short DNA sequencing reads and calling variants using mapping quality scores

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

Patterns of molecular evolution in Caenorhabditis preclude ancient origins of selfing.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

Mating systems and the efficacy of selection at the molecular level

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

Maximum likelihood estimation of ancestral codon usage bias parameters in Drosophila.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

Molecular signatures of natural selection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

Physicochemical constraint violation by missense substitutions mediates impairment of protein function and disease severity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

prot4EST: translating expressed sequence tags from neglected genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

Recombination and base composition: the case of the highly self-fertilizing plant Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

MUSCLE: multiple sequence alignment with high accuracy and high throughput

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

Perspective: purging the genetic load: a review of the experimental evidence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

Coding sequence divergence between two closely related plant species: Arabidopsis thaliana and Brassica rapa ssp. pekinensis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

Breeding systems and genome evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

Is self-fertilization an evolutionary dead end? Revisiting an old hypothesis with genetic theories and a macroevolutionary approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

The effects of Hill-Robertson interference between weakly selected mutations on patterns of molecular evolution and variation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

Inferring weak selection from patterns of polymorphism and divergence at "silent" sites in Drosophila DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

Codon usage in bacteria: correlation with gene expressivity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

Effects of a change in the level of inbreeding on the genetic load

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

The selection-mutation-drift theory of synonymous codon usage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

Amino acid substitution matrices from protein blocks

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

6 July 2018

Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-611

21 January 2018

The cost of inbreeding in Arabidopsis.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-611

21 January 2018

The evolution of biased codon and amino acid usage in nematode genomes

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-611

21 January 2018

Joint inference of the distribution of fitness effects of deleterious mutations and population demography based on nucleotide polymorphism frequencies

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-611

21 January 2018

Whole-genome sequencing of multiple Arabidopsis thaliana populations.

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-13-611

21 January 2018

Reconciling gene and genome duplication events: using multiple nuclear gene families to infer the phylogeny of the aquatic plant family Pontederiaceae.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

27 October 2018

An integrative test of the dead-end hypothesis of selfing evolution in Triticeae (Poaceae).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

27 October 2018

Mating system and recombination affect molecular evolution in four Triticeae species.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

27 October 2018

Impact of mating systems on patterns of sequence polymorphism in flowering plants.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

27 October 2018

A metapopulation perspective on genetic diversity and differentiation in partially self-fertilizing plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

27 October 2018

Linkage disequilibrium, gene trees and selfing: an ancestral recombination graph with partial self-fertilization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3533693

27 October 2018

Dynamics of inbreeding depression due to deleterious mutations in small populations: mutation parameters and inbreeding rate

1 reference

https://pubmed.ncbi.nlm.nih.gov/23145563

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rates and patterns of molecular evolution in inbred and outbred Arabidopsis

1 reference

https://pubmed.ncbi.nlm.nih.gov/23145563

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Patterns of nucleotide diversity in two species of Mimulus are affected by mating system and asymmetric introgression

1 reference

https://pubmed.ncbi.nlm.nih.gov/23145563

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Species selection maintains self-incompatibility

1 reference

https://pubmed.ncbi.nlm.nih.gov/23145563

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

THE DISSOLUTION OF A COMPLEX GENETIC POLYMORPHISM: THE EVOLUTION OF SELF-FERTILIZATION IN TRISTYLOUS EICHHORNIA PANICULATA (PONTEDERIACEAE)

1 reference

https://pubmed.ncbi.nlm.nih.gov/23145563

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

EVOLUTIONARY HISTORY OF THE MATING SYSTEM IN AMSINCKIA (BORAGINACEAE).

1 reference

https://pubmed.ncbi.nlm.nih.gov/23145563

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

EFFECTIVE POPULATION SIZE AND GENETIC DRIFT IN TRISTYLOUS EICHHORNIA PANICULATA (PONTEDERIACEAE).

1 reference

https://pubmed.ncbi.nlm.nih.gov/23145563

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2164-13-611

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

2 August 2017

ResearchGate publication ID

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