(Q33286236)

25 July 2017

title

Profiling the DNA-binding specificities of engineered Cys2His2 zinc finger domains using a rapid cell-based method (English)

1 reference

25 July 2017

J Keith Joung

1 reference

25 July 2017

Xiangdong Meng

1 reference

25 July 2017

Stacey Thibodeau-Beganny

series ordinal

1 reference

25 July 2017

Tao Jiang

series ordinal

1 reference

25 July 2017

Scot A Wolfe

series ordinal

1 reference

25 July 2017

language of work or name

English

0 references

publication date

30 May 2007

1 reference

25 July 2017

published in

Nucleic Acids Research

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25 July 2017

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25 July 2017

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25 July 2017

page(s)

e81

1 reference

Identifying DNA sequences recognized by a transcription factor using a bacterial one-hybrid system

25 July 2017

cites work

1 reference

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Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities

28 July 2018

1 reference

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One-step selection of artificial transcription factors using an in vivo screening system

28 July 2018

1 reference

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Computational redesign of endonuclease DNA binding and cleavage specificity

28 July 2018

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A bacterial one-hybrid selection system for interrogating zinc finger-DNA interactions

28 July 2018

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Counter-selectable marker for bacterial-based interaction trap systems

28 July 2018

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Inhibition of human immunodeficiency virus type 1 replication with artificial transcription factors targeting the highly conserved primer-binding site

28 July 2018

1 reference

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Efficient gene targeting in Drosophila with zinc-finger nucleases

28 July 2018

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Genetic reprogramming of tumor cells by zinc finger transcription factors

28 July 2018

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Highly efficient endogenous human gene correction using designed zinc-finger nucleases

28 July 2018

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A phage display selection of engrailed homeodomain mutants and the importance of residue Q50.

28 July 2018

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Highly specific zinc finger proteins obtained by directed domain shuffling and cell-based selection

28 July 2018

1 reference

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Zinc-finger protein-targeted gene regulation: genomewide single-gene specificity.

28 July 2018

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Fluorescent dye terminator sequencing methods for quantitative determination of replication fitness of human immunodeficiency virus type 1 containing the codon 74 and 184 mutations in reverse transcriptase

28 July 2018

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Drug discovery with engineered zinc-finger proteins

28 July 2018

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Chimeric nucleases stimulate gene targeting in human cells

28 July 2018

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Human zinc fingers as building blocks in the construction of artificial transcription factors.

28 July 2018

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Rapid, high-throughput engineering of sequence-specific zinc finger DNA-binding proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1920264

A rapid, generally applicable method to engineer zinc fingers illustrated by targeting the HIV-1 promoter

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1920264

Regulation of an endogenous locus using a panel of designed zinc finger proteins targeted to accessible chromatin regions. Activation of vascular endothelial growth factor A.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1920264

DNA recognition by Cys2His2 zinc finger proteins

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1920264

A bacterial two-hybrid selection system for studying protein-DNA and protein-protein interactions

28 July 2018

1 reference

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Improved DNA sequencing accuracy and detection of heterozygous alleles using manganese citrate and different fluorescent dye terminators.

28 July 2018

1 reference

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Toward controlling gene expression at will: selection and design of zinc finger domains recognizing each of the 5'-GNN-3' DNA target sequences

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1920264

Toward controlling gene expression at will: specific regulation of the erbB-2/HER-2 promoter by using polydactyl zinc finger proteins constructed from modular building blocks

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1920264

Peak height pattern in dichloro-rhodamine and energy transfer dye terminator sequencing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1920264

Genetic analysis of prokaryotic and eukaryotic DNA-binding proteins in Escherichia coli

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1920264

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1920264

Quantitative specificity of the Mnt repressor

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1920264

A general strategy for selecting high-affinity zinc finger proteins for diverse DNA target sites

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1920264

Zif268 protein-DNA complex refined at 1.6 A: a model system for understanding zinc finger-DNA interactions

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1920264

DNA-binding specificity of NGFI-A and related zinc finger transcription factors

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1920264

Zinc finger-DNA recognition: crystal structure of a Zif268-DNA complex at 2.1 A

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1920264

Sequence discrimination by alternatively spliced isoforms of a DNA binding zinc finger domain

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1920264

A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1920264

Probabilistic code for DNA recognition by proteins of the EGR family.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1920264

High-throughput SELEX SAGE method for quantitative modeling of transcription-factor binding sites.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1920264

Rational design of artificial zinc-finger proteins using a nondegenerate recognition code table.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1920264

Development of zinc finger domains for recognition of the 5'-ANN-3' family of DNA sequences and their use in the construction of artificial transcription factors

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1920264

Stimulation of homologous recombination through targeted cleavage by chimeric nucleases

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1920264

Analysis of zinc fingers optimized via phage display: evaluating the utility of a recognition code

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1920264

Expressing the human genome

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17537811

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Physical basis of a protein-DNA recognition code

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17537811

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKM385

1 reference

25 July 2017

1 reference

25 July 2017

1 reference